RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025866
(247 letters)
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 138 bits (350), Expect = 7e-40
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 35/212 (16%)
Query: 33 AVGEIGLD---KGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSV 89
A+GE GLD ++ Q+ F +Q EL+++ K P +HC + + L+I K
Sbjct: 106 AIGECGLDFDRLQFCPKDT----QLKYFEKQFELSEQTKLPMFLHCRNSHAEFLDITKRN 161
Query: 90 GPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKA-----QKVPSERILLETDAP 144
G ++HS+ G+ E L L Y F+G + +A + +PSE++++ETDAP
Sbjct: 162 RDRCVGGVVHSFDGTKEAAAALIDLDLYIGFNGCSLKTEANLEVLKSIPSEKLMIETDAP 221
Query: 145 DALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPA 204
+ + A ++ K S + N P
Sbjct: 222 -----------WC------GVKSTHAGSKY------IRTAFPTKKKWESGHCLKDRNEPC 258
Query: 205 NIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
+I +L+ ++++ D ELA Y N I++F
Sbjct: 259 HIIQILEIMSAVRDEDPLELANTLYNNTIKVF 290
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Length = 287
Score = 133 bits (336), Expect = 6e-38
Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 55/236 (23%)
Query: 11 VQERTPNWFSTLKEFFEITPAAAVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELK 68
+ + L+ AVGE GLD + R + Q QL LA +L+
Sbjct: 72 AKAWDTDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPL----QEKALEAQLTLAAQLR 127
Query: 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK 128
P +H A LL I+K G ++H + G E + L + +G++ +
Sbjct: 128 LPVFLHERDASERLLAILKDYRDHLTGAVVHCFTGEREALFAYLDLDLHIGITGWICDER 187
Query: 129 --------AQKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGS 180
+P R++LE+DAP +L LP+ L K
Sbjct: 188 RGTHLHPLVGNIPEGRLMLESDAP-----------YL------LPRSLRPK--------- 221
Query: 181 ASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
PK N PA + VL VA + E A + A F
Sbjct: 222 ---------------PKSGRNEPAFLPEVLREVALHRGESAEHTAAHTTATARDFF 262
>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}
Length = 272
Score = 131 bits (331), Expect = 2e-37
Identities = 51/242 (21%), Positives = 87/242 (35%), Gaps = 64/242 (26%)
Query: 11 VQERTPNWFSTLKEFFEITPAA--------AVGEIGLD--KGSKGREIDFMDQVGVFRQQ 60
TLK+ P A+GE+GLD G +Q V +Q
Sbjct: 72 GLPPEDQRSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQ 131
Query: 61 LELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSF 120
++LAK L P ++H A + +++ G V++H++ G + E + G +FS
Sbjct: 132 IQLAKRLNLPVNVHSRSAGRPTINLLQEQGAE--KVLLHAFDGRPSVAMEGVRAGYFFSI 189
Query: 121 SG---FLMSMK--AQKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHS 175
+ +++P I LETD+P L
Sbjct: 190 PPSIIRSGQKQKLVKQLPLTSICLETDSP-----------AL-----------------G 221
Query: 176 PNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 235
P N P NI +Y+A + ++ EE+ E++ +NA++L
Sbjct: 222 PEKQ-----------------VR--NEPWNISISAEYIAQVKGISVEEVIEVTTQNALKL 262
Query: 236 FS 237
F
Sbjct: 263 FP 264
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION,
structural genomics, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.1.9.12
Length = 264
Score = 131 bits (331), Expect = 2e-37
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 55/214 (25%)
Query: 33 AVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVG 90
A+GE GLD + E Q F QL +A +L P +HC A + +++
Sbjct: 92 AIGECGLDFNRNFSTPEE----QERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWL 147
Query: 91 PFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK--------AQKVPSERILLETD 142
G ++H + G+ E + G Y +G++ + +P+E++L+ETD
Sbjct: 148 DKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETD 207
Query: 143 APDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 202
AP +L LP++L+ K P N
Sbjct: 208 AP-----------YL------LPRDLTPK------------------------PSSRRNE 226
Query: 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
PA++ ++L +A LA + N LF
Sbjct: 227 PAHLPHILQRIAHWRGEDAAWLAATTDANVKTLF 260
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural
genomics center for infect disease, dysentery, liver
abcess; 1.95A {Entamoeba histolytica hm-1}
Length = 325
Score = 128 bits (323), Expect = 1e-35
Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 36/214 (16%)
Query: 33 AVGEIGLD----KGSKGREIDFMDQVGVFRQQLELA-KELKRPASIHCVRAFGDLLEIMK 87
A+GEIGLD + S +E Q+ +R L K P HC +++ DL ++ K
Sbjct: 133 AIGEIGLDYERLQFSD-KET----QLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNK 187
Query: 88 SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG-FLMSMK----AQKVPSERILLETD 142
+G ++H + G+ E + ++ G +G L S++ +++P ER+ +ETD
Sbjct: 188 ELGYNGCKGVVHCFDGTEEEMNQILNEGWDIGVTGNSLQSIELLNVMKQIPIERLHIETD 247
Query: 143 APDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 202
P K + KE+ + + N
Sbjct: 248 CPYCGIK------------KTSAGFKYLKEKDFGVKVEKYQRNKYVQR---------RNE 286
Query: 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
P+NI ++ ++S+ ++ E Y N++ ++
Sbjct: 287 PSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMY 320
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein
initiative, NEW YORK SGX research center for structural
GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Length = 401
Score = 119 bits (300), Expect = 6e-32
Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 49/244 (20%)
Query: 33 AVGEIGLD---KGSKGREIDFMDQVGVFRQQLELA----KELKRPASIHCVRAFGDLLEI 85
++GEIGLD +E+ Q F +QL+++ K P +H A D ++I
Sbjct: 158 SIGEIGLDYDRFHYSSKEM----QKVFFEEQLKISCLNDKLSSYPLFLHMRSACDDFVQI 213
Query: 86 MK--------------------------SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFS 119
++ +++HS+ GSA + +L L
Sbjct: 214 LERFVVGFTDEKDTFQLQKLGASSSSGFYKFHPDRKLVVHSFTGSAIDLQKLLNLSPNIF 273
Query: 120 FSGFLMSMKAQK-------VPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKE 172
S++ ++ +P+ER+LLETDAP K S + +
Sbjct: 274 IGVNGCSLRTEENLAVVKQIPTERLLLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAF 333
Query: 173 EHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNA 232
+ A + + K N P N+ V V+ + D+ L + +++
Sbjct: 334 KSVKKNKLADKLNA----EELYMVKGR-NEPCNMEQVAIVVSEVKDVDLATLIDTTWKTT 388
Query: 233 IRLF 236
++F
Sbjct: 389 CKIF 392
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 114 bits (289), Expect = 2e-31
Identities = 41/215 (19%), Positives = 71/215 (33%), Gaps = 64/215 (29%)
Query: 33 AVGEIGLD----KGSKGREIDFMDQVGVFRQQLELAKEL-KRPASIHCVRAFGDLLEIMK 87
VGE+GLD + Q VF+ L ++ R SIH RA ++L ++
Sbjct: 83 FVGEVGLDGSPSLRGTWTQ-----QFAVFQHILRRCEDHGGRILSIHSRRAESEVLNCLE 137
Query: 88 SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG-FLMSMK----AQKVPSERILLETD 142
+ I+H Y GS + LG +FS + + K + +P +R+L ET
Sbjct: 138 ANPR-SGTPILHWYSGSVTELRRAISLGCWFSVGPTMVRTQKGAALIRSMPRDRVLTET- 195
Query: 143 APDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNH 202
D P L
Sbjct: 196 --DG---------------PFLE------------------------------LDGQAAL 208
Query: 203 PANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237
P ++ +V++ ++ + + E+ + N RL
Sbjct: 209 PWDVKSVVEGLSKIWQIPASEVERIVKENVSRLLG 243
>1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural
genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP:
c.1.9.12
Length = 259
Score = 112 bits (282), Expect = 3e-30
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 16/147 (10%)
Query: 10 FVQERTPNWFSTLKEFFEITPA--AAVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAK 65
+++ + L++ E PA AVGEIGLD E Q + +QL+LAK
Sbjct: 69 MLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFER----QQWLLDEQLKLAK 124
Query: 66 ELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG--- 122
P +H R L +K P ++H + GS + +LG G
Sbjct: 125 RYDLPVILHSRRTHDKLAMHLKRHDL-PRTGVVHGFSGSLQQAERFVQLGYKIGVGGTIT 183
Query: 123 FLMSMK----AQKVPSERILLETDAPD 145
+ + K K+P +LLETDAPD
Sbjct: 184 YPRASKTRDVIAKLPLASLLLETDAPD 210
Score = 46.7 bits (112), Expect = 2e-06
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 201 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237
N P V + L +E+A+ N LF+
Sbjct: 221 NRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFN 257
>1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG,
PSI, protein structure initiative, joint center for
structural genomics; 1.80A {Thermotoga maritima} SCOP:
c.1.9.12
Length = 268
Score = 111 bits (279), Expect = 1e-29
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 11 VQERTPNWFSTLKEFFEITPAAAVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELK 68
+E ++ L++F + A+GE GLD + E+ Q VF +Q+ELA +L
Sbjct: 78 AKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEV----QKRVFVEQIELAGKLN 133
Query: 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG---FLM 125
P +H A+ + EI+++ +IH++ E + LG G +
Sbjct: 134 LPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGGPVTYPK 193
Query: 126 SMK----AQKVPSERILLETDAP 144
+ ++V E I+LETD P
Sbjct: 194 NEALREVVKRVGLEYIVLETDCP 216
Score = 46.3 bits (111), Expect = 2e-06
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 201 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237
N P + V++ ++ +L + + ++ E + NA R+F
Sbjct: 228 NEPKYLKYVVETISQVLGVPEAKVDEATTENARRIFL 264
>2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237,
structural GENO PSI, protein structure initiative; 2.20A
{Staphylococcus aureus subsp}
Length = 265
Score = 108 bits (273), Expect = 7e-29
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 11 VQERTPNWFSTLKEFFEITPAAAVGEIGLD----KGSKGREIDFMDQVGVFRQQLELAKE 66
+ T ++ + +GE+GLD K ++ Q VFR+Q+ LAK
Sbjct: 67 AIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSP--ADV----QKEVFRKQIALAKR 120
Query: 67 LKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPE-LSKLGAYFSFSG--- 122
LK P IH A D ++I+ G I+HS+ GS E+ +KL Y S G
Sbjct: 121 LKLPIIIHNREATQDCIDILLEEHAEEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVT 180
Query: 123 FLMSMK----AQKVPSERILLETDAP 144
F + + A+ V ER+L+ETDAP
Sbjct: 181 FKNAKQPKEVAKHVSMERLLVETDAP 206
Score = 46.7 bits (112), Expect = 2e-06
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 201 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237
N PA + V + +A L ++ EE+ E + +NA +LF+
Sbjct: 218 NEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN 254
>3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 3.20A
{Archaeoglobus fulgidus dsm 4304}
Length = 261
Score = 108 bits (272), Expect = 8e-29
Identities = 34/216 (15%), Positives = 66/216 (30%), Gaps = 76/216 (35%)
Query: 33 AVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHC-----VRAFGDLLEIMK 87
A GEIGL+ + +++ V + QLELAK + P IH ++A LEI++
Sbjct: 95 AFGEIGLELVTD-------EEIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILE 147
Query: 88 SVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMKAQK-------VPSERILLE 140
S+ D +I + E + + + + + + A+ ER +L
Sbjct: 148 SLDFPADLAVIDHV--NFETLDMVLETEYWIGLTVQPGKLSAEDAARIVAEHGPERFMLN 205
Query: 141 TDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETL 200
+DA
Sbjct: 206 SDA------------------GYRD----------------------------------- 212
Query: 201 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
+ + + +EE+ +++ NA +
Sbjct: 213 VEITTVAEAAVKIEE--AVGREEMEKVARENARKFL 246
>1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center
for structural genomics, nysgxrc; 1.90A {Escherichia
coli} SCOP: c.1.9.12
Length = 265
Score = 107 bits (270), Expect = 2e-28
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 33 AVGEIGLD--KGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVG 90
A+GE GLD + + Q F +++ +EL +P +H A D L I++
Sbjct: 91 ALGETGLDYYYTPETKVR----QQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEK 146
Query: 91 PFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG---FLMSMK----AQKVPSERILLETDA 143
G ++H + E +L LG Y SFSG F + + A+ VP +R+L+ETD+
Sbjct: 147 VTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDS 206
Query: 144 P 144
P
Sbjct: 207 P 207
Score = 45.6 bits (109), Expect = 5e-06
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 201 NHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKI 243
N PA + +V +Y+A L + EELA+++ N RLF + S++
Sbjct: 219 NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRL 261
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 45.8 bits (108), Expect = 4e-06
Identities = 24/157 (15%), Positives = 52/157 (33%), Gaps = 24/157 (15%)
Query: 11 VQERTPNWFSTLKEFFEITPA-AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKR 69
+ E + +KE + T A +I D+ + D V R KE K
Sbjct: 111 IDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITK-----DVEKVIRAAAIANKETKV 165
Query: 70 PASIHC---VRAFGDLLEIMKSVGPFPDGVII-HS-YLGSAEMVPELSKLGAYFSFSGFL 124
P H + I+ G P ++I H + + + +++ G++ +
Sbjct: 166 PIITHSNAHNNTGLEQQRILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYG 225
Query: 125 M------SMKAQKV-------PSERILLETDAPDALP 148
+ + + S++I++ D +
Sbjct: 226 LDLFLPVDKRNETTLRLIKDGYSDKIMISHDYCCTID 262
>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET:
KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A*
1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A
1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A*
1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...
Length = 330
Score = 41.6 bits (97), Expect = 1e-04
Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 23/191 (12%)
Query: 56 VFRQQLELAKELKRPASIHC---VRAFGDLLEIMKSVGPFPDGVII-HSYL-GSAEMVPE 110
V + + P + H R I +S G P V I HS +
Sbjct: 149 VLKAAARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTA 208
Query: 111 LSKLGAYFSFSGFLMSMKAQKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSA 170
L+ G S + + L + +L
Sbjct: 209 LAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTRALLIKAL--------------I 254
Query: 171 KEEHSPNVGSASD-NQFHASKDSSTLPKETLNHPANIHNVLDYVASLL---DMTKEELAE 226
+ + + ++D +S ++ + +P + + V L + +E LA
Sbjct: 255 DQGYMKQILVSNDWTFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLAG 314
Query: 227 LSYRNAIRLFS 237
++ N R S
Sbjct: 315 ITVTNPARFLS 325
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 1e-04
Identities = 53/271 (19%), Positives = 86/271 (31%), Gaps = 84/271 (30%)
Query: 19 FSTLKEFFEITPAAAVGEIGLDKGSKGREI-------DFMDQVGVFRQQLELAKELKRPA 71
FS L + G KG+ I F V + ++ KE+ +
Sbjct: 1659 FSILDIVINNPVNLTI----HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 72 SIHCVRAFGDLL------------------EIMKSVGPFPDGVII--HSYLG--SAEMVP 109
+ + R+ LL E +KS G P HS LG +A
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS-LGEYAA---- 1769
Query: 110 ELSKLGAYFSFSGFLMSMKAQKVPSER-ILLETDAPDALPKAELN----SLFLVDGDPSL 164
L+ L S + +V R + ++ A+P+ EL + ++
Sbjct: 1770 -LASLADVMSIESLV------EVVFYRGMTMQ----VAVPRDELGRSNYGMIAIN----- 1813
Query: 165 PQELSAK--EEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLD--YVAS----L 216
P ++A +E V K + L E N +NV + YVA+
Sbjct: 1814 PGRVAASFSQEALQYVVER------VGKRTGWL-VE----IVN-YNVENQQYVAAGDLRA 1861
Query: 217 LDMTKEELAELSYRN--AIRL---FSYEGSK 242
LD L + + I L S E +
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 38.5 bits (89), Expect = 0.002
Identities = 38/238 (15%), Positives = 71/238 (29%), Gaps = 65/238 (27%)
Query: 15 TPNWF--STLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLEL-AKELK--- 68
T ++F S L+E F D D+ EL K L
Sbjct: 24 TASFFIASQLQEQFNKILPEPTEGFAAD-----------DE---PTTPAELVGKFLGYVS 69
Query: 69 RPASIHCVRAFGDLLEIMKSVGPFPDGVI----IHSYLGSAEMVPELSKLGAYFSFSGFL 124
V F +L + + F + + IH+ + + + ++
Sbjct: 70 SLVEPSKVGQFDQVLNL--CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 125 MSMKAQKVPSERILLETDAPDALPKA-----------------------ELNSLFLVDGD 161
+ K P ++ + AL +A EL L+
Sbjct: 128 TARIMAKRPFDKK-----SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY--QTY 180
Query: 162 PSLPQEL--SAKEEHSPNVGSASDNQFHASK--DSSTLPKETLNHPANIHNVLDYVAS 215
L +L + E S + + D + ++ + E L +P+N + DY+ S
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN----ILEWLENPSNTPDK-DYLLS 233
Score = 37.0 bits (85), Expect = 0.006
Identities = 33/180 (18%), Positives = 55/180 (30%), Gaps = 69/180 (38%)
Query: 88 SVGPFPDGVIIHSYLGSAE---MVPELSKLGAYFSFS----GFLMSMKAQKVPSERILLE 140
S P + H GS E +VP S +F S F + P+E
Sbjct: 5 STRPL---TLSH---GSLEHVLLVPTAS----FFIASQLQEQFNKILPE---PTEG---- 47
Query: 141 TDAPDALPKAELNSLFLVDGDPSLPQELSAK-------EEHSPNVGSASD------NQFH 187
F D +P+ P EL K VG +F
Sbjct: 48 ---------------FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 188 ASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKILTEK 247
+ L +IH + A LL + + + + I+ +Y ++I+ ++
Sbjct: 93 ----NCYL------EGNDIHAL---AAKLL--QENDTTLVKTKELIK--NYITARIMAKR 135
Score = 34.6 bits (79), Expect = 0.027
Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 52/204 (25%)
Query: 70 PASIHCVRAFGDLLEIMKSVGPFP-DGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK 128
P + L E + P P +G + EL F G++ S+
Sbjct: 23 PTASFF--IASQLQEQFNKILPEPTEGFAADDEPTT---PAEL-----VGKFLGYVSSLV 72
Query: 129 AQKVPSERI-LLETDAPDALPKAELNSLFLVDGD-----PSLPQELSAKEEHSPNV---- 178
+ +L L E + +L D L QE + +
Sbjct: 73 EPSKVGQFDQVLNL----CL--TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 179 --GSASDNQFHASKDSSTLPKETLNHPANIH-------NVLDY--------------VAS 215
+ K +S L + A + N DY V
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 216 LLDMTKEELAELSY--RNAIRLFS 237
L+ + E L+EL +A ++F+
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFT 210
Score = 32.7 bits (74), Expect = 0.14
Identities = 43/263 (16%), Positives = 86/263 (32%), Gaps = 97/263 (36%)
Query: 12 QERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPA 71
Q T ++F L++ ++ T VG++ I F + L++ ++
Sbjct: 163 QGNTDDYFEELRDLYQ-TYHVLVGDL----------IKFSAET--------LSELIRTTL 203
Query: 72 SIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPE---------------LSKLGA 116
V F G+ I +L + P+ + +L
Sbjct: 204 DAEKV---------------FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 117 YF---------------SFSGFLMSMKAQKVPSERILLETDAPDALPKAELNS---LFLV 158
Y G + +Q + + + ETD+ ++ + + LF +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 159 DG--------DPSLPQELSAK-EEH-----SP--NVGSASDNQF--HASKDSSTLPKE-- 198
G + SLP + E+ SP ++ + + Q + +K +S LP
Sbjct: 307 -GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 199 ---TL-NHPANIHNVLD-YVASL 216
+L N N+ V+ SL
Sbjct: 366 VEISLVNGAKNL--VVSGPPQSL 386
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A
{Escherichia coli} SCOP: c.1.9.3
Length = 291
Score = 41.1 bits (96), Expect = 2e-04
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 56 VFRQQLELAKELKRPASIHCV--RAFGDLLEIMKSVGPFPDGVII-HS-YLGSAEMVPEL 111
VF + RP S H + L ++++ G V + H + + + ++
Sbjct: 139 VFIAAALAHNQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKM 198
Query: 112 SKLGAYFSFSGFLMSMK-------------AQKVPSERILLETDAP 144
LGAY F + + R++L D
Sbjct: 199 IDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVMLSMDIT 244
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 39.8 bits (92), Expect = 5e-04
Identities = 16/111 (14%), Positives = 25/111 (22%), Gaps = 18/111 (16%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFGDL--LEIMKSVGPFPDGVII---HSYLGSAEMVPE 110
+ P +H L + + G PD + I +
Sbjct: 170 ALEVAARTSILTGCPILVHTQLGTMALEVAKHLIGFGANPDKIQISHLNKNPDKYYYEKV 229
Query: 111 LSKLGAYFSFSGFLMSMK-------------AQKVPSERILLETDAPDALP 148
+ + G F G K + I L DA L
Sbjct: 230 IKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRILY 280
>3ojg_A Phosphotriesterase; (beta/alpha)8 barrel, lactonase, hydrolase;
HET: KCX HL4; 1.60A {Geobacillus kaustophilus} PDB:
3orw_A* 3f4c_A* 3f4d_A*
Length = 330
Score = 38.2 bits (88), Expect = 0.001
Identities = 14/85 (16%), Positives = 22/85 (25%), Gaps = 4/85 (4%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFG--DLLEIMKSVGPFPDGVII-HSYL-GSAEMVPEL 111
FR KE H + + G P ++I H + +
Sbjct: 164 FFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCGNTDPDYHRKT 223
Query: 112 SKLGAYFSFSGFLMSMKAQKVPSER 136
G Y +F F + E
Sbjct: 224 LAYGVYIAFDRFGIQGMVGAPTDEE 248
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 35.0 bits (80), Expect = 0.017
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFG--DLLEIMKSVGPFPDGVII-HSYLG-SAEMVPEL 111
FR + +E P H E++ S+G P ++I H E
Sbjct: 174 FFRAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRET 233
Query: 112 SKLGAYFSFSGFLMSMKAQKVPSER 136
+ G +F +
Sbjct: 234 LRHGVSIAFDRIGLQGMVGTPTDAE 258
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 34.7 bits (79), Expect = 0.018
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 17/106 (16%)
Query: 56 VFRQQLELAKELKRPASIHCVRAFG--DLLEIMKSVGPFPDGVII-HS-YLGSAEMVPEL 111
R E K P H + +EI+K + + I H ++
Sbjct: 169 TIRAVARAHHETKAPIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDRNLDPYYHKQV 228
Query: 112 SKLGAYFSFSGF---LMSMKAQKV----------PSERILLETDAP 144
+K GA+ SF G + ++ ++ ++IL+ D
Sbjct: 229 AKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTA 274
>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM
barrel, binuclear zinc, protein structure initiative II
(PSI II); 1.80A {Rhodobacter sphaeroides 2}
Length = 364
Score = 33.9 bits (77), Expect = 0.038
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 12/102 (11%)
Query: 31 AAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHC---VRAFGDLLEIMK 87
+GEIG+ E R P +H R +L++++
Sbjct: 172 IGLIGEIGVSSDFTAEEEK------SLRGAARAQVRTGLPLMVHLPGWFRLAHRVLDLVE 225
Query: 88 SVGPFPDGVII-HSYLGSA--EMVPELSKLGAYFSFSGFLMS 126
G ++ H L++ GA+ F M
Sbjct: 226 EEGADLRHTVLCHMNPSHMDPVYQATLAQRGAFLEFDMIGMD 267
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.29
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 126 SMKAQKVPSERILLETDAPDALPKAELNS 154
++K K+ + L+ A D+ P + +
Sbjct: 21 ALK--KLQAS---LKLYADDSAPALAIKA 44
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase,
bimetal binding site, enzyme FUNC initiative, EFI; HET:
SO4; 1.60A {Mycobacterium avium subsp}
Length = 423
Score = 29.2 bits (65), Expect = 1.5
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 202 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
H + + + + A L ++ ++ ++ NA+ L
Sbjct: 359 HGEGLASPVSFTAELKGFSESDIRKIMRDNALDLL 393
>2gwg_A 4-oxalomesaconate hydratase; TIM-barrel like protein, structural
genomics, PSI, protein S initiative; 1.80A
{Rhodopseudomonas palustris} SCOP: c.1.9.15
Length = 350
Score = 28.0 bits (62), Expect = 3.1
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 206 IHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237
+ Y+ + +T EE ++ NA R++
Sbjct: 300 YDDTKRYIEASTILTPEEKQQIYEGNARRVYP 331
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum
spherical virus}
Length = 239
Score = 27.5 bits (60), Expect = 3.8
Identities = 26/129 (20%), Positives = 40/129 (31%), Gaps = 20/129 (15%)
Query: 8 FRFVQERTPNWFSTLKEF-FEITPAAAVGEIGLDKGSKGREIDFMDQ------------- 53
F+ T + K+ +I A A G GL G +D
Sbjct: 90 MEFMYWYTRTYLEEAKDIRPDIADALARGMAGLAFGRTDWVASMLDPQIMRHIYTDPEVA 149
Query: 54 --VGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPEL 111
R L + + + D++ K+ G P+ V+ AE VP L
Sbjct: 150 RIYSETRDMLRRVSDYYISLTTMELGKVADIIAEAKAKGENPE-VVAREI---AEAVPRL 205
Query: 112 SKLGAYFSF 120
S YF+
Sbjct: 206 SPKSLYFNL 214
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA
repair, endonuclease, helix-hairpin-helix, DNA binding
protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
PDB: 2kn7_A*
Length = 63
Score = 25.4 bits (56), Expect = 4.6
Identities = 5/29 (17%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 202 HPANIHNVLDYVAS---LLDMTKEELAEL 227
+ N +++ +V + L ++++EL +
Sbjct: 13 NAKNCRSLMHHVKNIAELAALSQDELTSI 41
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET:
DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Length = 84
Score = 25.6 bits (56), Expect = 5.3
Identities = 5/29 (17%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 202 HPANIHNVLDYVAS---LLDMTKEELAEL 227
+ N +++ +V + L ++++EL +
Sbjct: 27 NAKNCRSLMHHVKNIAELAALSQDELTSI 55
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 27.2 bits (60), Expect = 5.8
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 64 AKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLG 103
K LK A+ RA L+I+ +G + + + LG
Sbjct: 57 VKMLKEGATHSEHRALMSELKILIHIGHHLN---VVNLLG 93
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase;
neurological disorders, metal-dependent amidohydrolase,
kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Length = 336
Score = 26.7 bits (59), Expect = 7.3
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 202 HPANIHNVLDYVASLLDMTKEELAELSYRNAIRLF 236
P + S+ + +E +L NA+
Sbjct: 294 FPLGELEPGKLIESMEEFDEETKNKLKAGNALAFL 328
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,762,575
Number of extensions: 224132
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 52
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)