RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025866
(247 letters)
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 82.7 bits (203), Expect = 1e-19
Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 54/242 (22%)
Query: 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLE 62
V +E ++ L++F + A+GE GLD + +V F +Q+E
Sbjct: 62 SVGVHPHDAKEVPEDFIEHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRV--FVEQIE 119
Query: 63 LAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG 122
LA +L P +H A+ + EI+++ +IH++ E + LG G
Sbjct: 120 LAGKLNLPLVVHIRDAYSEAYEILRTESLPEKRGVIHAFSSDYEWAKKFIDLGFLLGIGG 179
Query: 123 FLMSMK-------AQKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHS 175
+ K ++V E I+LETD P P+
Sbjct: 180 PVTYPKNEALREVVKRVGLEYIVLETDCPFLPPQP------------------------- 214
Query: 176 PNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 235
+ N P + V++ ++ +L + + ++ E + NA R+
Sbjct: 215 --------------------FRGKRNEPKYLKYVVETISQVLGVPEAKVDEATTENARRI 254
Query: 236 FS 237
F
Sbjct: 255 FL 256
>d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH
{Escherichia coli [TaxId: 562]}
Length = 265
Score = 79.7 bits (195), Expect = 2e-18
Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 52/217 (23%)
Query: 36 EIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGPFPDG 95
+ Q F +++ +EL +P +H A D L I++ G
Sbjct: 92 LGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCG 151
Query: 96 VIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK-------AQKVPSERILLETDAPDALP 148
++H + E +L LG Y SFSG + A+ VP +R+L+ETD+P P
Sbjct: 152 GVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAP 211
Query: 149 KAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHN 208
+ N PA + +
Sbjct: 212 VPH---------------------------------------------RGKENQPAMVRD 226
Query: 209 VLDYVASLLDMTKEELAELSYRNAIRLFSYEGSKILT 245
V +Y+A L + EELA+++ N RLF + S++ +
Sbjct: 227 VAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQS 263
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV
{Escherichia coli [TaxId: 562]}
Length = 259
Score = 78.2 bits (191), Expect = 8e-18
Identities = 44/242 (18%), Positives = 73/242 (30%), Gaps = 53/242 (21%)
Query: 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMDQVGVFRQQLE 62
+ +++ + L++ E PA V + G + F Q + +QL+
Sbjct: 62 ALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLK 121
Query: 63 LAKELKRPASIHCVRAFGDLLEIMKSVGPFPDGVIIHSYLGSAEMVPELSKLGAYFSFSG 122
LAK P +H R L +K G ++H + GS + +LG G
Sbjct: 122 LAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTG-VVHGFSGSLQQAERFVQLGYKIGVGG 180
Query: 123 FLMSMK-------AQKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEHS 175
+ + K+P +LLETDAPD
Sbjct: 181 TITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGF------------------------ 216
Query: 176 PNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRNAIRL 235
+ N P V + L +E+A+ N L
Sbjct: 217 ---------------------QGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTL 255
Query: 236 FS 237
F+
Sbjct: 256 FN 257
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC)
{Escherichia coli [TaxId: 562]}
Length = 260
Score = 65.4 bits (158), Expect = 3e-13
Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 51/214 (23%)
Query: 32 AAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELKRPASIHCVRAFGDLLEIMKSVGP 91
A+GE GLD +Q F QL +A +L P +HC A + +++
Sbjct: 87 VAIGECGLDF--NRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLD 144
Query: 92 FPDGVIIHSYLGSAEMVPELSKLGAYFSFSGFLMSMK--------AQKVPSERILLETDA 143
G ++H + G+ E + G Y +G++ + +P+E++L+ETDA
Sbjct: 145 KLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDA 204
Query: 144 PDALPKAELNSLFLVDGDPSLPQELSAKEEHSPNVGSASDNQFHASKDSSTLPKETLNHP 203
P LP+ D + P N P
Sbjct: 205 PYLLPR-----------------------------------------DLTPKPSSRRNEP 223
Query: 204 ANIHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237
A++ ++L +A LA + N LF
Sbjct: 224 AHLPHILQRIAHWRGEDAAWLAATTDANVKTLFG 257
>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 60.3 bits (145), Expect = 2e-11
Identities = 27/245 (11%), Positives = 59/245 (24%), Gaps = 70/245 (28%)
Query: 11 VQERTPNWFSTLKEFFEITP--AAAVGEIGLDKGSKGREIDFMDQVGVFRQQLELAKELK 68
VQE +++ + T A + EIG +G + ++V F +
Sbjct: 97 VQELAQEMVDEIEQGIDGTELKAGIIAEIGTSEG---KITPLEEKV--FIAAALAHNQTG 151
Query: 69 RPASIHCVRAFGDLLEIMKSVGPFPDGV----IIHSYLGSAEMVPELSKLGAYFSFSGFL 124
RP S H + L ++ D + + + ++ LGAY F
Sbjct: 152 RPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIG 211
Query: 125 MSMK-------------AQKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAK 171
+ + R++L D
Sbjct: 212 KNSYYPDEKRIAMLHALRDRGLLNRVMLSMDITRRSHLK--------------------- 250
Query: 172 EEHSPNVGSASDNQFHASKDSSTLPKETLNHPANIHNVLDYVASLLDMTKEELAELSYRN 231
+ + + + ++ ++ + N
Sbjct: 251 ------------------------ANGGYGYDYLLTTFIPQLRQ-SGFSQADVDVMLREN 285
Query: 232 AIRLF 236
+ F
Sbjct: 286 PSQFF 290
>d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE)
{Pseudomonas diminuta [TaxId: 293]}
Length = 331
Score = 44.7 bits (104), Expect = 4e-06
Identities = 29/247 (11%), Positives = 59/247 (23%), Gaps = 26/247 (10%)
Query: 3 WVCFIFRFVQERTPNWFSTLKEFFEITPAAAVGEIGLDKGSKGREIDFMD---QVGVFRQ 59
F L +FF + + G+ G Q V +
Sbjct: 93 ATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGKATPFQELVLKA 152
Query: 60 QLELAKELKRPASIHCVRAFGDLLEIMKSVG-----PFPDGVIIHSYLGSAEMVPELSKL 114
+ P + H + D + P + + L+
Sbjct: 153 AARASLATGVPVTTHTAASQRDGEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAAR 212
Query: 115 GAYFSFSGFLMSMKAQKVPSERILLETDAPDALPKAELNSLFLVDGDPSLPQELSAKEEH 174
G S + + L + +L + +
Sbjct: 213 GYLIGLDHIPHSAIGLEDNASASALLGIRSWQTRALLIKAL--------------IDQGY 258
Query: 175 SPNVGSASDNQFHASKDSSTLPKETL-NHPANIHNVLDYVASLL---DMTKEELAELSYR 230
+ ++D F S + + +P + + V L + +E LA ++
Sbjct: 259 MKQILVSNDWLFGFSSYVTNIMDVMDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVT 318
Query: 231 NAIRLFS 237
N R S
Sbjct: 319 NPARFLS 325
>d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 342
Score = 28.3 bits (61), Expect = 0.97
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 206 IHNVLDYVASLLDMTKEELAELSYRNAIRLFS 237
+ Y+ + +T EE ++ NA R++
Sbjct: 300 YDDTKRYIEASTILTPEEKQQIYEGNARRVYP 331
>d2gexa1 d.17.4.9 (A:2-139) Nogalamycin biosynthesis protein SnoL
{Streptomyces nogalater [TaxId: 38314]}
Length = 138
Score = 25.2 bits (54), Expect = 5.6
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 73 IHCVRAFGDLLEIMKSVGPFPDGV 96
+ + + + +G PDG+
Sbjct: 115 VVEHWDVFNFSPLFRDLGVVPDGL 138
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 24.4 bits (53), Expect = 5.7
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 197 KETLNHP-ANIHNVLDYVASLLDMTKEELAELSYRNAIR 234
+ TLN+ + LD +A ++ + E + L++ A
Sbjct: 11 RTTLNNYNQLFTDALDILAENDELRENEGSCLAFMRASS 49
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
[TaxId: 2336]}
Length = 404
Score = 25.4 bits (55), Expect = 6.6
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 97 IIHSYLGSAEMVPELSKLGAYFSFSGFLMSM 127
I +Y+ M E+ S + LM M
Sbjct: 34 ITETYIPLLMMFDEIEDFRLTMSITPPLMEM 64
>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase,
central domain {Lactobacillus brevis [TaxId: 1580]}
Length = 485
Score = 25.1 bits (54), Expect = 8.6
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 199 TLNHPANIHNVLDYVASLLDMTKEELAELSYRNA 232
+ P N+L Y LD E + A
Sbjct: 102 GITDPKVTRNLLMYRYKQLDGAYINAQEQGLKGA 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0368 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,033
Number of extensions: 40577
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 17
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.8 bits)