BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025868
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DKQ|A Chain A, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
           From Shewanella Baltica Os155 At 2.26 A Resolution
 pdb|3DKQ|B Chain B, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
           From Shewanella Baltica Os155 At 2.26 A Resolution
 pdb|3DKQ|C Chain C, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
           From Shewanella Baltica Os155 At 2.26 A Resolution
          Length = 243

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 10/166 (6%)

Query: 51  LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
           L  + N F+  E     +  +A  ++             + N ++  +DPV A  + +  
Sbjct: 21  LIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAXATTRKRNQQLDKDDPV-AVALGQQI 79

Query: 111 LSKLFTDIK-IRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
             +L    + +   L +   P + F RY+ G+ FG HID ++ +  DG  RT  +  ++L
Sbjct: 80  XDRLLAHPQFVSAALPLQFYPPL-FNRYQGGETFGYHIDNAIRSTPDGXIRTDLSATLFL 138

Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
           S     +   +L I +    +   L  G  V Y S +  L +V P+
Sbjct: 139 SEPENYQG-GELVIQDTYGQQSIKLSAGSLVLYPSSS--LHQVTPV 181


>pdb|4ATZ|A Chain A, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
 pdb|4ATZ|B Chain B, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
 pdb|4ATZ|C Chain C, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
          Length = 201

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 32  WPIIKPKQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYR- 90
           W    P  + R++  KD  L  V    T   S+     A       +GSL P+ G     
Sbjct: 26  WTTPAPSPNCRLNAEKDAKLTLV---LTKCGSQIL---ATVSVLAVKGSLAPISGTVQSA 79

Query: 91  ------DNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFG 144
                 D + + +N+  L    W       F +  +    AVG  PN+  Y    G+   
Sbjct: 80  HLIIRFDENGVLLNNSFLDPEYWN------FRNGDLTEGNAVGFMPNLSAYPKSHGKTAK 133

Query: 145 QHIDESVNLGDGKRTHYTLLIYLSG 169
            +I   V L   K    TL I L+G
Sbjct: 134 SNIVSQVYLNGDKTKPVTLTITLNG 158


>pdb|3B5O|A Chain A, Crystal Structure Of A Cadd-Like Protein Of Unknown
           Function (Npun_f6505) From Nostoc Punctiforme Pcc 73102
           At 1.35 A Resolution
 pdb|3B5P|A Chain A, Crystal Structure Of A Cadd-Like Protein Of Unknown
           Function (Npun_f6505) From Nostoc Punctiforme Pcc 73102
           At 2.00 A Resolution
          Length = 244

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 115 FTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIY-LSGGLKA 173
           FT++  R  L  G N         V Q   ++IDE      G  +HYTLL   L  GL  
Sbjct: 58  FTELARRKALGAGWN--------GVAQELQENIDEEXGSTTGGISHYTLLADGLEEGLGV 109

Query: 174 KAKN 177
             KN
Sbjct: 110 AVKN 113


>pdb|2BB0|A Chain A, Structure Of Imidazolonepropionase From Bacillus Subtilis
 pdb|2BB0|B Chain B, Structure Of Imidazolonepropionase From Bacillus Subtilis
 pdb|2G3F|A Chain A, Crystal Structure Of Imidazolonepropionase Complexed With
           Imidazole-4- Acetic Acid Sodium Salt, A Substrate
           Homologue
 pdb|2G3F|B Chain B, Crystal Structure Of Imidazolonepropionase Complexed With
           Imidazole-4- Acetic Acid Sodium Salt, A Substrate
           Homologue
          Length = 421

 Score = 27.7 bits (60), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 50  DLFTVQNFFTSAESKGFVKAAEAMGF---VHQGSLGPLKGEAYRDNDRISVNDPVLAETV 106
           D+FT    FT ++S+ +++ A   GF   +H   + PL G       +    D ++  + 
Sbjct: 219 DIFTETGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGAELAGKLKAVSADHLVGTS- 277

Query: 107 WESGLSKLFTDIKIRGKLAVGLNPNIRFY 135
            + G+ KL       G +AV L P   FY
Sbjct: 278 -DEGIKKLAE----AGTIAV-LLPGTTFY 300


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,324,888
Number of Sequences: 62578
Number of extensions: 309216
Number of successful extensions: 664
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 7
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)