BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025868
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8EAI9|Y3913_SHEON PKHD-type hydroxylase SO_3913 OS=Shewanella oneidensis (strain
MR-1) GN=SO_3913 PE=3 SV=1
Length = 224
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
L + N F+ E + +A ++ + + N ++ +DPV A + E
Sbjct: 2 LIEIPNVFSKQEVNQLREQLDARTWIDGNQTSGMMASTRKRNQQLDKDDPV-ALQIGELI 60
Query: 111 LSKLFTD-IKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
+++L + + L + P + F RY+ G FG HID ++ + DG RT + ++L
Sbjct: 61 MARLLAHPLFVSAALPLQFYPPL-FNRYQGGDTFGYHIDNAIRSTSDGMVRTDLSATLFL 119
Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
S L A +L I + + L G V Y S + L +V P+
Sbjct: 120 S-ELNAYEGGELVIQDTYGQQSIKLAAGSLVLYPSTS--LHQVTPV 162
>sp|Q49ZQ6|HUTI_STAS1 Imidazolonepropionase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=hutI
PE=3 SV=1
Length = 412
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 50 DLFTVQNFFTSAESKGFVKAAEAMGF---VHQGSLGPLKG-EAYRDNDRISVNDPVLAET 105
D+F FT ESK +++AA+A+GF +H + PL G E D + IS + V + T
Sbjct: 212 DIFCETGVFTVEESKKYMEAAKALGFDVKIHADEIDPLGGLELAIDENAISADHLVASST 271
>sp|P51211|RNE_PORPU Ribonuclease E homolog OS=Porphyra purpurea GN=rne PE=3 SV=1
Length = 511
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 45 RLKDTDLFTVQNFFTSAESKGFVKAA--EAMGFVHQGSLGPLKGEAYRDN--DRISVNDP 100
++ D L TV F S + FV E GF+H GPLK + Y +N + +++
Sbjct: 33 QVSDIYLGTVDKIF-SGINAAFVDLGKNEYSGFIHISDTGPLKKKYYINNITNILTIRQK 91
Query: 101 VLAETVWESGLSK---LFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGK 157
+L + + E L+K L +I + G RY V F Q I S + D
Sbjct: 92 ILVQIIKEPTLNKGPRLTANITLSG-------------RYIVLMPFSQAICISRKIYDED 138
Query: 158 RTHY 161
HY
Sbjct: 139 ERHY 142
>sp|Q1XDS6|RNE_PORYE Ribonuclease E homolog OS=Porphyra yezoensis GN=rne PE=3 SV=1
Length = 509
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 71 EAMGFVHQGSLGPLKGEAYRDN--DRISVNDPVLAETVWESGLSK---LFTDIKIRGKLA 125
E GF+H GPLK + Y +N + +++ +L + + E L+K L +I + G
Sbjct: 60 EYSGFIHISDTGPLKKKYYVNNITNILTIRQKILVQIIKEPTLNKGPRLTANITLSG--- 116
Query: 126 VGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHY 161
RY V F Q I S + D HY
Sbjct: 117 ----------RYIVLMPFSQSICISRKIYDEDERHY 142
>sp|Q0HYV7|Y698_SHESR PKHD-type hydroxylase Shewmr7_0698 OS=Shewanella sp. (strain MR-7)
GN=Shewmr7_0698 PE=3 SV=1
Length = 224
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
L + N F+ E + +A ++ + + N ++ +DPV+ + E
Sbjct: 2 LIEIPNVFSKEEVNQLREELDARTWIDGNQTSGVMASTRKRNQQLDKDDPVVLR-IGELI 60
Query: 111 LSKLFT-DIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
+++L + + L + P + F RY+ G+ FG HID ++ + DG RT + ++L
Sbjct: 61 MARLLAHPLFVSAALPLQFYPPL-FNRYQGGETFGYHIDNAIRSTSDGMVRTDLSATLFL 119
Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
S +L I + + L G V Y S + L +V P+
Sbjct: 120 SEP-DTYQGGELVIQDTYGQQSIKLAAGSLVLYPSTS--LHQVTPV 162
>sp|B0T179|Y045_CAUSK PKHD-type hydroxylase Caul_0045 OS=Caulobacter sp. (strain K31)
GN=Caul_0045 PE=3 SV=1
Length = 227
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 26/108 (24%)
Query: 134 FYRYKVGQRFGQHIDESVN----LGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEP 189
F RY VG FG H+D SV G RT ++ ++L S P+
Sbjct: 84 FNRYGVGMGFGDHVDNSVRRDPVTGQTLRTDLSITVFL-----------------SDPDD 126
Query: 190 LVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVK 237
GGE V + L ++A G A+++ LH V +GV+
Sbjct: 127 YDGGELVVEDAYGSHLVKLA--AGAAILY---PASSLHHVTEVTRGVR 169
>sp|A0KT36|Y717_SHESA PKHD-type hydroxylase Shewana3_0717 OS=Shewanella sp. (strain
ANA-3) GN=Shewana3_0717 PE=3 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
L + N F+ E + +A ++ + + N ++ +DPV A + E
Sbjct: 2 LIEIPNVFSKEEVNQLREQLDARTWIDGNQTSGVMASTRKRNQQLDKDDPV-ALQIGELI 60
Query: 111 LSKLFT-DIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
+++L + + L + P + F RY+ G+ FG HID ++ + +G RT + ++L
Sbjct: 61 MARLLAHPLFVSAALPLQFYPPL-FNRYQGGETFGYHIDNAIRSTSEGMVRTDLSATLFL 119
Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
S +L I + + L G V Y S + L +V P+
Sbjct: 120 SEP-DTYQGGELVIQDTYGQQSIKLAAGSLVLYPSTS--LHQVTPV 162
>sp|Q9ZE81|SYR_RICPR Arginine--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E)
GN=argS PE=3 SV=1
Length = 576
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 38 KQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISV 97
++DL +K F+ Q+ + E + VK E MG +++G+L KG+ + D
Sbjct: 241 RKDLADLGIKHDVFFSEQSLYDKGEIEKTVKLLERMGLIYEGTLPAPKGKVHED------ 294
Query: 98 NDPVLAETVWESGLSKLF 115
WE + KLF
Sbjct: 295 ---------WEYRVQKLF 303
>sp|Q0HF55|Y3244_SHESM PKHD-type hydroxylase Shewmr4_3244 OS=Shewanella sp. (strain MR-4)
GN=Shewmr4_3244 PE=3 SV=1
Length = 224
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
L + N F+ E + +A ++ + + N ++ +DPV A + E
Sbjct: 2 LIEIPNVFSKEEVNQLREELDARTWIDGNQTSGVMASTRKRNQQLDKDDPV-ALQIGELI 60
Query: 111 LSKLFT-DIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
+++L + + L + P + F RY+ G+ FG HID ++ + +G RT + ++L
Sbjct: 61 MARLLAHPLFVSAALPLQFYPPL-FNRYQGGETFGYHIDNAIRSTSEGMVRTDLSATLFL 119
Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
S +L I + + L G V Y S + L +V P+
Sbjct: 120 SEP-DTYQGGELVIQDTYGQQSIKLAAGSLVLYPSTS--LHQVTPV 162
>sp|Q68XT9|SYR_RICTY Arginine--tRNA ligase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=argS PE=3 SV=1
Length = 576
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 38 KQDLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISV 97
++DL +K F+ Q+ + E + VK E+MG +++G+L KG+ + D
Sbjct: 241 RKDLADLGIKHDIFFSEQSLYDKGEIEKTVKLLESMGLIYEGTLPAPKGKVHED------ 294
Query: 98 NDPVLAETVWESGLSKLF 115
W+ + KLF
Sbjct: 295 ---------WKHKVQKLF 303
>sp|B8E9P5|Y741_SHEB2 PKHD-type hydroxylase Sbal223_0741 OS=Shewanella baltica (strain
OS223) GN=Sbal223_0741 PE=3 SV=1
Length = 224
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 10/166 (6%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
L + N F+ E + +A ++ + N ++ +DPV A + +
Sbjct: 2 LIEIPNVFSKQEVSHLREQLDARCWIDGNQTSGAMATTRKRNQQLDKDDPV-AVALGQQI 60
Query: 111 LSKLFTDIK-IRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
+ +L + + L + P + F RY+ G+ FG HID ++ + DG RT + ++L
Sbjct: 61 MDRLLAQPQFVSAALPLQFYPPL-FNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFL 119
Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
S + +L I + + L G V Y S + L +V P+
Sbjct: 120 SEPENYQG-GELVIQDTYGQQSIKLSAGSLVLYPSSS--LHQVTPV 162
>sp|A9L129|Y750_SHEB9 PKHD-type hydroxylase Sbal195_0750 OS=Shewanella baltica (strain
OS195) GN=Sbal195_0750 PE=3 SV=2
Length = 224
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
L + N F+ E + +A ++ + N ++ +DPV A + +
Sbjct: 2 LIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPV-AVALGQQI 60
Query: 111 LSKLFTDIK-IRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
+ +L + + L + P + F RY+ G+ FG HID ++ + DG RT + ++L
Sbjct: 61 MDRLLAHPQFVSAALPLQFYPPL-FNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFL 119
Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
S ++ +L I + + L G V Y S + L +V P+
Sbjct: 120 SEP-ESYQGGELVIQDTYGQQSIKLSAGSLVLYPSSS--LHQVTPV 162
>sp|A6WJ89|Y721_SHEB8 PKHD-type hydroxylase Shew185_0721 OS=Shewanella baltica (strain
OS185) GN=Shew185_0721 PE=3 SV=2
Length = 224
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
L + N F+ E + +A ++ + N ++ +DPV A + +
Sbjct: 2 LIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPV-AVALGQQI 60
Query: 111 LSKLFTDIK-IRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
+ +L + + L + P + F RY+ G+ FG HID ++ + DG RT + ++L
Sbjct: 61 MDRLLAHPQFVSAALPLQFYPPL-FNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFL 119
Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
S ++ +L I + + L G V Y S + L +V P+
Sbjct: 120 SEP-ESYQGGELVIQDTYGQQSIKLSAGSLVLYPSSS--LHQVTPV 162
>sp|Q1GXG2|Y096_METFK PKHD-type hydroxylase Mfla_0096 OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=Mfla_0096 PE=3
SV=1
Length = 176
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAE----TV 106
L T+ FT E++ + +A ++ + ++N +++ N P+ E V
Sbjct: 2 LITIPEVFTPEEAESIRQRLDATEWLDGKVTAGYQSAKAKNNLQLAENHPLAIELGDLIV 61
Query: 107 WESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKR 158
LF + K+ L F RY+ GQ FG HID +V G R
Sbjct: 62 SRLTQHPLFMSAALPRKVFPPL-----FNRYESGQSFGFHIDNAVRSLSGSR 108
>sp|A7ZAE6|HUTI_BACA2 Imidazolonepropionase OS=Bacillus amyloliquefaciens (strain FZB42)
GN=hutI PE=3 SV=1
Length = 421
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 50 DLFTVQNFFTSAESKGFVKAAEAMGF---VHQGSLGPLKG-EAYRDNDRISVNDPVLAET 105
D+FT FT ++S+ ++K A GF +H + PL G E + +S + V A
Sbjct: 219 DIFTETGVFTVSQSRNYLKKASEAGFGLKIHADEIDPLGGAELAAELHAVSADHLVGAS- 277
Query: 106 VWESGLSKLFTDIKIRGKLAVGLNPNIRFY 135
+ G+ KL G +AV L P FY
Sbjct: 278 --DEGIEKLAAS----GTIAV-LLPGTTFY 300
>sp|A2BYX6|PEBA_PROM5 15,16-dihydrobiliverdin:ferredoxin oxidoreductase
OS=Prochlorococcus marinus (strain MIT 9515) GN=pebA
PE=3 SV=1
Length = 236
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 167 LSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLA 206
L GG K + N ++ N S P++G + +++G+ KLLA
Sbjct: 57 LDGGDKLQVFNTVAYPNFKSESPILGADILWFGTSQKLLA 96
>sp|A3PF83|PEBA_PROM0 15,16-dihydrobiliverdin:ferredoxin oxidoreductase
OS=Prochlorococcus marinus (strain MIT 9301) GN=pebA
PE=3 SV=1
Length = 236
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 167 LSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLA 206
L GG K + N ++ N +S P++G + +++G+ KLLA
Sbjct: 57 LDGGKKLQVFNTVAYPNFNSEMPILGADILWFGNSQKLLA 96
>sp|A3D8P6|Y3634_SHEB5 PKHD-type hydroxylase Sbal_3634 OS=Shewanella baltica (strain OS155
/ ATCC BAA-1091) GN=Sbal_3634 PE=1 SV=1
Length = 224
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 10/166 (6%)
Query: 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESG 110
L + N F+ E + +A ++ + N ++ +DPV A + +
Sbjct: 2 LIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPV-AVALGQQI 60
Query: 111 LSKLFTDIK-IRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV-NLGDGK-RTHYTLLIYL 167
+ +L + + L + P + F RY+ G+ FG HID ++ + DG RT + ++L
Sbjct: 61 MDRLLAHPQFVSAALPLQFYPPL-FNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFL 119
Query: 168 SGGLKAKAKNDLSIHNDSSPEP--LVGGETVFYGSRNKLLAEVAPI 211
S + +L I + + L G V Y S + L +V P+
Sbjct: 120 SEPENYQG-GELVIQDTYGQQSIKLSAGSLVLYPSSS--LHQVTPV 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,256,220
Number of Sequences: 539616
Number of extensions: 3955421
Number of successful extensions: 7739
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7730
Number of HSP's gapped (non-prelim): 28
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)