Query 025868
Match_columns 247
No_of_seqs 137 out of 1219
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:26:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 1.9E-35 4.1E-40 266.9 18.2 183 32-245 39-251 (310)
2 PRK05467 Fe(II)-dependent oxyg 100.0 5.1E-33 1.1E-37 240.9 16.5 170 51-244 2-176 (226)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 4E-31 8.6E-36 221.0 17.8 170 49-244 1-177 (178)
4 KOG1591 Prolyl 4-hydroxylase a 100.0 1.6E-28 3.4E-33 219.6 14.2 176 40-245 87-283 (289)
5 PHA02869 C4L/C10L-like gene fa 99.9 6.1E-23 1.3E-27 187.4 12.7 130 87-247 62-192 (418)
6 PHA02813 hypothetical protein; 99.8 1.6E-20 3.4E-25 169.6 13.1 130 83-245 49-181 (354)
7 COG3128 PiuC Uncharacterized i 99.8 3.4E-19 7.4E-24 147.9 12.8 169 51-244 4-179 (229)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.7 9.7E-17 2.1E-21 121.6 7.2 92 132-245 1-100 (100)
9 PF13661 2OG-FeII_Oxy_4: 2OG-F 99.0 7.7E-10 1.7E-14 79.1 6.2 58 128-201 9-66 (70)
10 KOG3710 EGL-Nine (EGLN) protei 99.0 3.6E-09 7.7E-14 91.0 11.0 180 43-245 47-238 (280)
11 PF03336 Pox_C4_C10: Poxvirus 99.0 4.4E-09 9.5E-14 95.3 11.9 131 86-245 37-168 (339)
12 TIGR02408 ectoine_ThpD ectoine 98.5 3.1E-06 6.8E-11 75.8 13.1 43 31-73 7-52 (277)
13 COG3751 EGL-9 Predicted prolin 98.4 9.1E-07 2E-11 77.9 8.7 97 131-246 137-240 (252)
14 PF09859 Oxygenase-NA: Oxygena 98.3 1.5E-06 3.3E-11 71.5 7.1 90 132-241 64-167 (173)
15 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.2 3.4E-06 7.5E-11 63.3 6.5 83 130-244 2-96 (98)
16 TIGR01762 chlorin-enz chlorina 98.0 0.0002 4.4E-09 64.6 14.3 193 42-240 7-242 (288)
17 PF05721 PhyH: Phytanoyl-CoA d 98.0 2.5E-05 5.5E-10 64.7 7.9 165 48-235 3-206 (211)
18 PF13759 2OG-FeII_Oxy_5: Putat 98.0 2.7E-05 5.9E-10 59.2 7.1 78 134-241 4-99 (101)
19 PHA02866 Hypothetical protein; 97.6 0.00027 5.8E-09 63.4 8.5 91 128-246 79-169 (333)
20 COG3826 Uncharacterized protei 97.5 0.001 2.2E-08 55.9 9.4 173 46-241 20-229 (236)
21 KOG3844 Predicted component of 97.4 0.0012 2.6E-08 61.4 10.1 165 50-246 37-217 (476)
22 TIGR02466 conserved hypothetic 97.4 0.0011 2.3E-08 57.0 9.2 83 133-245 99-199 (201)
23 PF13532 2OG-FeII_Oxy_2: 2OG-F 96.9 0.043 9.3E-07 45.8 13.7 78 131-235 98-177 (194)
24 PF12851 Tet_JBP: Oxygenase do 96.7 0.0065 1.4E-07 50.8 7.0 75 142-241 86-166 (171)
25 PRK15401 alpha-ketoglutarate-d 94.4 2.1 4.5E-05 37.1 13.9 154 45-235 14-196 (213)
26 PHA02923 hypothetical protein; 94.1 0.34 7.3E-06 43.8 8.7 78 128-242 65-142 (315)
27 PF06822 DUF1235: Protein of u 92.1 1.2 2.6E-05 39.7 9.1 88 127-244 47-135 (266)
28 KOG4459 Membrane-associated pr 87.4 0.12 2.6E-06 49.1 -1.0 60 158-237 365-425 (471)
29 PF05118 Asp_Arg_Hydrox: Aspar 86.6 5.3 0.00012 32.8 8.5 80 131-245 81-160 (163)
30 PHA02985 hypothetical protein; 86.1 5.2 0.00011 35.7 8.5 86 128-244 55-140 (271)
31 PLN02365 2-oxoglutarate-depend 85.4 5.6 0.00012 36.0 8.7 81 130-241 149-244 (300)
32 PLN03001 oxidoreductase, 2OG-F 83.7 9.6 0.00021 33.9 9.3 77 131-241 117-208 (262)
33 PLN02515 naringenin,2-oxogluta 83.6 11 0.00023 35.1 10.0 79 131-241 196-289 (358)
34 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 83.4 1.5 3.1E-05 37.4 3.8 43 190-234 136-179 (195)
35 PLN02904 oxidoreductase 82.4 13 0.00028 34.6 10.0 77 131-241 209-300 (357)
36 PLN02750 oxidoreductase, 2OG-F 82.2 13 0.00028 34.4 9.8 80 130-241 193-287 (345)
37 PLN00417 oxidoreductase, 2OG-F 81.5 6.2 0.00013 36.5 7.5 78 131-241 204-296 (348)
38 KOG3200 Uncharacterized conser 81.2 2.1 4.5E-05 36.1 3.7 89 48-151 11-109 (224)
39 PLN02403 aminocyclopropanecarb 80.9 7.9 0.00017 35.2 7.8 77 131-241 154-247 (303)
40 PLN02485 oxidoreductase 80.6 6.1 0.00013 36.1 7.1 79 131-241 185-282 (329)
41 PLN02156 gibberellin 2-beta-di 78.0 11 0.00024 34.7 8.0 78 131-241 179-273 (335)
42 PLN02984 oxidoreductase, 2OG-F 77.9 10 0.00022 35.0 7.7 77 131-241 201-293 (341)
43 PLN02912 oxidoreductase, 2OG-F 76.9 21 0.00045 33.1 9.4 77 131-241 198-289 (348)
44 PLN02276 gibberellin 20-oxidas 76.5 26 0.00056 32.6 10.0 78 130-241 206-298 (361)
45 PLN02947 oxidoreductase 76.2 12 0.00025 35.1 7.7 77 131-241 226-317 (374)
46 COG3491 PcbC Isopenicillin N s 76.2 7 0.00015 35.8 5.8 79 129-240 173-266 (322)
47 PF02668 TauD: Taurine catabol 76.2 3.4 7.4E-05 35.4 3.8 37 205-243 220-258 (258)
48 PTZ00273 oxidase reductase; Pr 76.1 23 0.00049 32.2 9.4 77 131-241 178-270 (320)
49 PLN02299 1-aminocyclopropane-1 75.3 11 0.00024 34.5 7.1 78 131-241 159-251 (321)
50 PLN02216 protein SRG1 74.8 15 0.00031 34.2 7.8 78 131-241 211-303 (357)
51 KOG0143 Iron/ascorbate family 74.3 14 0.00029 34.0 7.4 79 131-242 177-271 (322)
52 cd00250 CAS_like Clavaminic ac 73.5 5.1 0.00011 35.0 4.3 38 205-244 219-259 (262)
53 KOG3959 2-Oxoglutarate- and ir 73.5 5.9 0.00013 35.0 4.5 98 44-152 67-176 (306)
54 PLN02254 gibberellin 3-beta-di 72.8 14 0.00031 34.3 7.3 78 131-241 211-303 (358)
55 PLN02997 flavonol synthase 72.4 17 0.00036 33.4 7.5 76 131-240 184-274 (325)
56 PLN02704 flavonol synthase 71.3 11 0.00023 34.7 6.0 77 131-241 200-291 (335)
57 PLN02639 oxidoreductase, 2OG-F 69.9 48 0.001 30.4 10.0 78 131-241 191-283 (337)
58 PLN02758 oxidoreductase, 2OG-F 69.5 51 0.0011 30.6 10.2 79 131-241 212-305 (361)
59 PLN03178 leucoanthocyanidin di 67.9 18 0.00039 33.6 6.8 77 131-241 212-303 (360)
60 PF14033 DUF4246: Protein of u 67.6 24 0.00051 34.5 7.8 32 207-241 436-473 (501)
61 PLN03002 oxidoreductase, 2OG-F 64.8 31 0.00066 31.7 7.6 78 131-241 183-279 (332)
62 COG4340 Uncharacterized protei 62.9 14 0.0003 31.6 4.5 44 188-234 156-201 (226)
63 TIGR00568 alkb DNA alkylation 62.8 30 0.00066 28.7 6.6 20 131-150 96-115 (169)
64 PLN02393 leucoanthocyanidin di 62.4 32 0.00069 32.0 7.3 78 131-241 214-306 (362)
65 COG5285 Protein involved in bi 56.7 26 0.00057 31.9 5.4 71 143-235 133-219 (299)
66 KOG4176 Uncharacterized conser 51.4 1.4E+02 0.003 27.6 9.4 109 100-240 189-299 (323)
67 PRK09553 tauD taurine dioxygen 43.2 17 0.00037 32.3 2.1 34 144-199 95-128 (277)
68 cd00250 CAS_like Clavaminic ac 42.4 28 0.0006 30.4 3.4 37 141-199 94-130 (262)
69 COG3145 AlkB Alkylated DNA rep 40.9 1E+02 0.0023 26.3 6.5 74 130-231 106-182 (194)
70 TIGR02410 carnitine_TMLD trime 40.9 33 0.00072 31.8 3.8 37 205-244 312-348 (362)
71 TIGR02409 carnitine_bodg gamma 37.4 34 0.00074 31.7 3.3 36 142-199 186-221 (366)
72 PRK02963 carbon starvation ind 37.3 39 0.00084 31.1 3.5 35 206-242 267-304 (316)
73 PF02668 TauD: Taurine catabol 35.4 36 0.00078 28.9 2.9 38 141-200 95-132 (258)
74 PRK09553 tauD taurine dioxygen 33.7 64 0.0014 28.6 4.3 39 204-244 232-271 (277)
75 KOG3889 Predicted gamma-butyro 32.8 36 0.00079 30.9 2.5 39 204-245 318-361 (371)
76 TIGR02409 carnitine_bodg gamma 32.3 61 0.0013 30.0 4.1 38 205-244 313-352 (366)
77 cd03542 Rieske_RO_Alpha_HBDO R 31.4 99 0.0021 24.0 4.6 45 188-235 9-53 (123)
78 PLN00139 hypothetical protein; 27.8 74 0.0016 29.2 3.7 39 140-200 110-148 (320)
79 PF09846 DUF2073: Uncharacteri 26.8 71 0.0015 24.5 2.8 33 40-72 11-43 (104)
80 PF00355 Rieske: Rieske [2Fe-2 25.4 2.3E+02 0.005 20.3 5.4 29 205-236 26-54 (97)
81 TIGR02410 carnitine_TMLD trime 24.1 86 0.0019 29.1 3.5 36 143-200 179-214 (362)
82 PHA02577 2 DNA end protector p 24.0 72 0.0016 26.8 2.6 51 131-200 34-84 (181)
83 COG3365 Uncharacterized protei 23.1 80 0.0017 24.5 2.5 33 40-72 24-56 (118)
84 cd03535 Rieske_RO_Alpha_NDO Ri 23.0 1.6E+02 0.0035 22.7 4.4 45 188-235 11-55 (123)
85 cd03472 Rieske_RO_Alpha_BPDO_l 23.0 1.4E+02 0.0031 23.3 4.1 46 188-236 17-62 (128)
86 PF12973 Cupin_7: ChrR Cupin-l 22.2 2.3E+02 0.0049 20.4 4.9 18 130-147 24-41 (91)
87 cd06530 S26_SPase_I The S26 Ty 21.8 2E+02 0.0044 20.1 4.4 27 190-221 14-43 (85)
88 COG3450 Predicted enzyme of th 21.3 1.9E+02 0.004 22.7 4.3 26 207-236 83-108 (116)
89 COG2175 TauD Probable taurine 20.8 1.9E+02 0.0042 26.2 4.9 36 204-241 237-273 (286)
90 PF06253 MTTB: Trimethylamine 20.4 66 0.0014 31.5 2.0 17 56-72 34-50 (505)
91 cd08788 CARD_NOD2_2_CARD15 Cas 20.1 48 0.001 24.3 0.7 16 53-68 24-39 (81)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=1.9e-35 Score=266.90 Aligned_cols=183 Identities=25% Similarity=0.292 Sum_probs=145.9
Q ss_pred CCCCCCCCcceeeeec-CCCEEEEcCCCCHHHHHHHHHHHHhCCceeccC----CCCccCCceeecceEEecC--HHHHH
Q 025868 32 WPIIKPKQDLRVSRLK-DTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGS----LGPLKGEAYRDNDRISVND--PVLAE 104 (247)
Q Consensus 32 ~p~~~p~~~l~v~~~~-~~~i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~----~~~~~~~~~R~~~~~~~~~--~~~~~ 104 (247)
.|.|.| .+++.|+ +|.|++|+||||++||++||++++.. +.++.. .+......+|++...+++. ..+++
T Consensus 39 ~~~~~~---~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~-l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~ 114 (310)
T PLN00052 39 APPFNA---SRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKK-IQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVS 114 (310)
T ss_pred CCCcCC---ceEEEecCCCCEEEECCcCCHHHHHHHHHhcccc-cccceeecCCCCccccCCCEEecceeecCCCCHHHH
Confidence 455655 7888887 68999999999999999999999874 443322 1222345689999988864 45788
Q ss_pred HHHHHhhhhhhhhhhhhcccccccCCceEEEecCCCCcccccccCCccC---CCCceeEEEEEEEecCccccccccccCC
Q 025868 105 TVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNL---GDGKRTHYTLLIYLSGGLKAKAKNDLSI 181 (247)
Q Consensus 105 ~l~~ri~~~~~~~~~~~~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~---~~~~~r~~T~llYLN~~~~~~~~~~~~~ 181 (247)
+|.+|+.. + .+.+....|.||++||++||+|.+|+|++... ..+++|++|+|+|||
T Consensus 115 ~I~~Ria~-~-------t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLn------------- 173 (310)
T PLN00052 115 RIEERIAA-W-------TFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLS------------- 173 (310)
T ss_pred HHHHHHHH-H-------hCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEec-------------
Confidence 89888633 2 23455678999999999999999999987532 235688999999999
Q ss_pred CCCCCCCCCcCcceEEecCCC--------------ceeeEEecCCCcEEEEecC------CCCCcccccccccccEEEEE
Q 025868 182 HNDSSPEPLVGGETVFYGSRN--------------KLLAEVAPIEGMALIHIHG------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 182 ~~~~~~d~~eGGeT~F~~~~~--------------~~~~~V~P~~G~aviF~~~------d~~~lH~g~PV~~G~Kyiir 241 (247)
|+.+||||.||.... +.+++|+|++|+||+|+|. |.+++|+||||++|+||+++
T Consensus 174 ------dv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~at 247 (310)
T PLN00052 174 ------TVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAP 247 (310)
T ss_pred ------cCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEE
Confidence 789999999997521 1368999999999999973 46899999999999999999
Q ss_pred Eeee
Q 025868 242 SDVV 245 (247)
Q Consensus 242 tdv~ 245 (247)
-|+.
T Consensus 248 kWi~ 251 (310)
T PLN00052 248 KWIH 251 (310)
T ss_pred Eeee
Confidence 9985
No 2
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=100.00 E-value=5.1e-33 Score=240.88 Aligned_cols=170 Identities=20% Similarity=0.252 Sum_probs=135.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeccCCCCccCCceeecceEEecCHHHHHHHHHHhhhhhhhhhhhh-cccccccC
Q 025868 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIR-GKLAVGLN 129 (247)
Q Consensus 51 i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~l~~ri~~~~~~~~~~~-~~~~~~l~ 129 (247)
+++|++|||++||+++|+.++..+|.++....+...+.+|+|.++..+++ ++..|+++++..+.....+. ...+..+
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~taG~~~~~vKnN~ql~~d~~-~a~~l~~~i~~~L~~~~l~~sa~lp~~i- 79 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTAGAQAAQVKNNQQLPEDSP-LARELGNLILDALTRNPLFFSAALPRKI- 79 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCcCccchhcccccccCCCCH-HHHHHHHHHHHHHhcCchhhhhcccccc-
Confidence 67899999999999999999998898765545545678999988887666 88889998765543221111 1223333
Q ss_pred CceEEEecCCCCcccccccCCccCCC----CceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCcee
Q 025868 130 PNIRFYRYKVGQRFGQHIDESVNLGD----GKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLL 205 (247)
Q Consensus 130 e~~q~~rY~~G~~f~~H~D~~~~~~~----~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~ 205 (247)
.+++|+||.+|++|++|+|+...... +.+|.+|++||||++ ++|+||||.|+...+.
T Consensus 80 ~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~-----------------~~yeGGEl~~~~~~g~-- 140 (226)
T PRK05467 80 HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDP-----------------DDYDGGELVIEDTYGE-- 140 (226)
T ss_pred ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCC-----------------CCCcCCceEEecCCCc--
Confidence 36789999999999999999875422 237799999999965 6799999999875433
Q ss_pred eEEecCCCcEEEEecCCCCCcccccccccccEEEEEEee
Q 025868 206 AEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDV 244 (247)
Q Consensus 206 ~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv 244 (247)
..|+|++|++|+|+|. ++|+|+||++|+||++..|+
T Consensus 141 ~~Vkp~aG~~vlfps~---~lH~v~pVt~G~R~~~~~Wi 176 (226)
T PRK05467 141 HRVKLPAGDLVLYPST---SLHRVTPVTRGVRVASFFWI 176 (226)
T ss_pred EEEecCCCeEEEECCC---CceeeeeccCccEEEEEecH
Confidence 6899999999999997 89999999999999999986
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.97 E-value=4e-31 Score=220.98 Aligned_cols=170 Identities=21% Similarity=0.317 Sum_probs=133.9
Q ss_pred CCEEEEcCCCCHHHHHHHHHHHHhCCceeccC----CCCccCCceeecceEEecC---HHHHHHHHHHhhhhhhhhhhhh
Q 025868 49 TDLFTVQNFFTSAESKGFVKAAEAMGFVHQGS----LGPLKGEAYRDNDRISVND---PVLAETVWESGLSKLFTDIKIR 121 (247)
Q Consensus 49 ~~i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~----~~~~~~~~~R~~~~~~~~~---~~~~~~l~~ri~~~~~~~~~~~ 121 (247)
+.|++++||||++||++||++++...+ ++.. ..+.....+|++...|++. +.+.+.|++++ ..++.. .
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i-~~~~~~---~ 75 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRL-ADFLGL---L 75 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHH-HHHHCC---C
Confidence 478999999999999999999998754 3221 1111345789998888866 46778888885 433321 0
Q ss_pred cccccccCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC
Q 025868 122 GKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR 201 (247)
Q Consensus 122 ~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~ 201 (247)
. ......+.+|++||.+|++|.+|+|....... ..|.+|+++||| ++++||+|.|+..+
T Consensus 76 ~-~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~-~~r~~T~~~yLn-------------------~~~~GG~~~f~~~~ 134 (178)
T smart00702 76 R-GLPLSAEDAQVARYGPGGHYGPHVDNFEDDEN-GDRIATFLLYLN-------------------DVEEGGELVFPGLG 134 (178)
T ss_pred c-hhhccCcceEEEEECCCCcccCcCCCCCCCCC-CCeEEEEEEEec-------------------cCCcCceEEecCCC
Confidence 0 12456788999999999999999999865332 467899999999 78999999999865
Q ss_pred CceeeEEecCCCcEEEEecCCCCCcccccccccccEEEEEEee
Q 025868 202 NKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDV 244 (247)
Q Consensus 202 ~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv 244 (247)
......|+|++|++|+|++.+.+++|+|+||++|.||+|+.|+
T Consensus 135 ~~~~~~v~P~~G~~v~f~~~~~~~~H~v~pv~~G~r~~~~~W~ 177 (178)
T smart00702 135 LMVCATVKPKKGDLLFFPSGRGRSLHGVCPVTRGSRWAITGWI 177 (178)
T ss_pred CccceEEeCCCCcEEEEeCCCCCccccCCcceeCCEEEEEEEE
Confidence 3334689999999999998644689999999999999999997
No 4
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=219.56 Aligned_cols=176 Identities=23% Similarity=0.310 Sum_probs=137.2
Q ss_pred cceeeeec-CCCEEEEcCCCCHHHHHHHHHHHHhCCceeccC---C--CCccCCceeecceEEecC--HHHHHHHHHHhh
Q 025868 40 DLRVSRLK-DTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGS---L--GPLKGEAYRDNDRISVND--PVLAETVWESGL 111 (247)
Q Consensus 40 ~l~v~~~~-~~~i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~---~--~~~~~~~~R~~~~~~~~~--~~~~~~l~~ri~ 111 (247)
.+++|.+. +|++++++||||++||++|+.+++.. +..+.. . +......+|++...|+.. ..+.+.|-+||.
T Consensus 87 p~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~-l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~ 165 (289)
T KOG1591|consen 87 PVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPK-LERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIA 165 (289)
T ss_pred chhhhhcccCCceEeehhcCCHHHHHHHHHhhhhh-hhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHH
Confidence 36777776 68999999999999999999999984 333221 1 111223469888888754 456667777752
Q ss_pred hhhhhhhhhhcccccccCCceEEEecCCCCcccccccCCcc--C-----CCCceeEEEEEEEecCccccccccccCCCCC
Q 025868 112 SKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVN--L-----GDGKRTHYTLLIYLSGGLKAKAKNDLSIHND 184 (247)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~--~-----~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~ 184 (247)
. ....+....|.+|+++|+.||+|.+|+|.+.. . ..++.|+.|+|+||+
T Consensus 166 ~--------~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls---------------- 221 (289)
T KOG1591|consen 166 D--------LTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLS---------------- 221 (289)
T ss_pred h--------ccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEec----------------
Confidence 2 12345566799999999999999999999852 1 124688999999999
Q ss_pred CCCCCCcCcceEEecCCCceeeEEecCCCcEEEEec------CCCCCcccccccccccEEEEEEeee
Q 025868 185 SSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIH------GDKCMLHEARNVIKGVKYIFRSDVV 245 (247)
Q Consensus 185 ~~~d~~eGGeT~F~~~~~~~~~~V~P~~G~aviF~~------~d~~~lH~g~PV~~G~Kyiirtdv~ 245 (247)
++.+||+|+||..... +.|+|++|+|++|++ .|.+++|++|||..|.||+...|+.
T Consensus 222 ---~v~~GG~TvFP~~~~~--~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~ 283 (289)
T KOG1591|consen 222 ---DVEQGGETVFPNLGMK--PAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIH 283 (289)
T ss_pred ---ccCCCCcccCCCCCCc--ccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeee
Confidence 8899999999986532 489999999999986 2578999999999999999999975
No 5
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.89 E-value=6.1e-23 Score=187.41 Aligned_cols=130 Identities=24% Similarity=0.309 Sum_probs=109.7
Q ss_pred CceeecceEEecCHHHHHHHHHHhhhhhhhhhhhhc-ccccccCCceEEEecCCCCcccccccCCccCCCCceeEEEEEE
Q 025868 87 EAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRG-KLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLI 165 (247)
Q Consensus 87 ~~~R~~~~~~~~~~~~~~~l~~ri~~~~~~~~~~~~-~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~ll 165 (247)
...|.+.++.+ .+.+++.||+|+ +.+++. .+.+ +...+++++++|+||.+|++|.+|.|+.+... +.++.+|+||
T Consensus 62 ~~~~ksKqii~-e~~La~~L~erl-r~lLp~-~lk~~v~~V~lnerirfyrY~kGq~F~~H~Dg~~~rs-~e~s~~tLLL 137 (418)
T PHA02869 62 IKDRKSKQIVF-ENSLNDDLLKKL-HALIYD-ELSTVVDSVTVENTVTLIMYEKGDYFARHRDFSTVFS-KNIICVHLLL 137 (418)
T ss_pred eccccceeEEe-chHHHHHHHHHH-HHhhhH-HhhCccceEEEcceEEEEEECCCCcccccccCceecC-CCEEEEEEEE
Confidence 34577777777 457999999996 444442 3445 37889999999999999999999999987654 5688999999
Q ss_pred EecCccccccccccCCCCCCCCCCCcCcceEEecCCCceeeEEecCCCcEEEEecCCCCCcccccccccccEEEEEEeee
Q 025868 166 YLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVV 245 (247)
Q Consensus 166 YLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv~ 245 (247)
||| ++.+||||.|+... ...|.|++| |+|.|. ..|+|.+|++|.|||+|+|||
T Consensus 138 YLN-------------------d~~~GGET~f~~~~---~~sI~pksg--LLFdh~---l~Heg~~V~sG~KyVartDVm 190 (418)
T PHA02869 138 YLE-------------------QPETGGETVIYIDN---NTSVKLKTD--HLFDKT---IEHESITVESGRKCVALFDVL 190 (418)
T ss_pred EEe-------------------ccCCCCceEEEeCC---CceEecCCC--eEeccc---cccCCcEeecCeEEEEEEEEE
Confidence 999 88999999999832 367999999 999997 899999999999999999999
Q ss_pred eC
Q 025868 246 FA 247 (247)
Q Consensus 246 y~ 247 (247)
|+
T Consensus 191 yr 192 (418)
T PHA02869 191 LE 192 (418)
T ss_pred EE
Confidence 95
No 6
>PHA02813 hypothetical protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=169.58 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=108.1
Q ss_pred CccCCceeecceEEecCHHHHHHHHHHhhhhhhhhhhhhcccc---cccCCceEEEecCCCCcccccccCCccCCCCcee
Q 025868 83 PLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRGKLA---VGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRT 159 (247)
Q Consensus 83 ~~~~~~~R~~~~~~~~~~~~~~~l~~ri~~~~~~~~~~~~~~~---~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r 159 (247)
.......|+++|++++++ +.||+++ +.+++. .+.++.+ .+++++++|+||.+|++|.+|.|+.+...... +
T Consensus 49 e~l~~~iRnNkrviid~~---~~L~erI-r~~Lp~-~l~~~~lv~~V~vnerirfyrY~kGq~F~~H~Dg~~~r~k~~-s 122 (354)
T PHA02813 49 EVINTNERQCKQYIIRGL---DDIFKVI-RKKLLL-SFEFPQKISDIILDNTITLIKYEKGDFFNNHRDFIHFKSKNC-Y 122 (354)
T ss_pred eEEccccccceEEEEcCH---HHHHHHH-HHhhHH-HhcCCccceeEEEcceEEEEEECCCcccCcccCCceeecCCc-e
Confidence 445678999999999986 8899996 444442 3445555 78999999999999999999999987664333 8
Q ss_pred EEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCceeeEEecCCCcEEEEecCCCCCcccccccccccEEE
Q 025868 160 HYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYI 239 (247)
Q Consensus 160 ~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyi 239 (247)
.+|+||||| ++.+||||.|+..+.. .|. .|++|+|.|. +.|+|.+|++|.|||
T Consensus 123 ~~tLLLYLN-------------------~~~~GGeT~f~~~~~t---sI~--~g~dlLFdh~---l~Heg~~V~sG~KyV 175 (354)
T PHA02813 123 CYHLVLYLN-------------------NTSKGGNTNIHIKDNT---IFS--TKNDVLFDKT---LNHSSDIITDGEKNI 175 (354)
T ss_pred EEEEEEEEe-------------------ccCCCCceEEEcCCCc---eEe--ecceEEEecc---cccCCcEeccCeEEE
Confidence 899999999 8899999999976322 466 8999999997 899999999999999
Q ss_pred EEEeee
Q 025868 240 FRSDVV 245 (247)
Q Consensus 240 irtdv~ 245 (247)
+-=||+
T Consensus 176 a~~~V~ 181 (354)
T PHA02813 176 ALINVV 181 (354)
T ss_pred EEEEEE
Confidence 988875
No 7
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.81 E-value=3.4e-19 Score=147.90 Aligned_cols=169 Identities=22% Similarity=0.271 Sum_probs=121.1
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeccCCCCccCCceeecceEEecCHHHHHHHHHHhhhhhhhhhhh--hccccccc
Q 025868 51 LFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKI--RGKLAVGL 128 (247)
Q Consensus 51 i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~l~~ri~~~~~~~~~~--~~~~~~~l 128 (247)
.+.|+.+||+++|.++.+..+...|.+......-.....|++.++-.++ .+...|-.-+++.+-. .++ .-..+..+
T Consensus 4 ~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~g~q~a~vk~n~qlp~~s-~l~~~vg~~il~al~~-~plff~aALp~t~ 81 (229)
T COG3128 4 MLHIPEVLSEAQVARIRAALEQAEWVDGRATQGPQGAQVKNNLQLPQDS-ALARELGNEILQALTA-HPLFFAAALPRTC 81 (229)
T ss_pred EEechhhCCHHHHHHHHHHHhhccccccccccCcchhhhhccccCCccc-HHHHHHHHHHHHHHHh-chhHHHhhccccc
Confidence 5678999999999999999998777664332222344567676665544 3333343333222111 111 11122222
Q ss_pred CCceEEEecCCCCcccccccCCccC-CCC----ceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCc
Q 025868 129 NPNIRFYRYKVGQRFGQHIDESVNL-GDG----KRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNK 203 (247)
Q Consensus 129 ~e~~q~~rY~~G~~f~~H~D~~~~~-~~~----~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~ 203 (247)
...+|++|+.|++|.+|.|+.... .++ -+..+++.+||+|+ ++|+|||+++...-+.
T Consensus 82 -~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DP-----------------edYdGGeLVv~dtYg~ 143 (229)
T COG3128 82 -LPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDP-----------------EDYDGGELVVNDTYGN 143 (229)
T ss_pred -CCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCc-----------------cccCCceEEEeccccc
Confidence 356899999999999999998765 222 36789999999975 8999999999876543
Q ss_pred eeeEEecCCCcEEEEecCCCCCcccccccccccEEEEEEee
Q 025868 204 LLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDV 244 (247)
Q Consensus 204 ~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv 244 (247)
..|+-.+|++|+||+. ++|++.||++|.|+++-.|+
T Consensus 144 --h~VklPAGdLVlypSt---SlH~VtPVTRg~R~asffW~ 179 (229)
T COG3128 144 --HRVKLPAGDLVLYPST---SLHEVTPVTRGERFASFFWI 179 (229)
T ss_pred --eEEeccCCCEEEcccc---cceeccccccCceEEEeeeh
Confidence 6788888999999998 99999999999999998875
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.68 E-value=9.7e-17 Score=121.61 Aligned_cols=92 Identities=32% Similarity=0.439 Sum_probs=70.2
Q ss_pred eEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC--CceeeEEe
Q 025868 132 IRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR--NKLLAEVA 209 (247)
Q Consensus 132 ~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~--~~~~~~V~ 209 (247)
+|+++|.+|++|++|+|... ...+.+|+|+|||+.. ..++||+|.|+... ......+.
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~----~~~~~~t~llyL~~~~----------------~~~~GG~l~~~~~~~~~~~~~~~~ 60 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY----DPHRRVTLLLYLNDPE----------------WEFEGGELEFYPSKDSDDVSREVE 60 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC----CCSEEEEEEEESS-CS-----------------HCEE--EEETTTS-TSSTCEEEG
T ss_pred CEEEEECcCCEEeeeECCCC----CCcceEEEEEEECCCC----------------cccCCCEEEEeccccCCCcceEEE
Confidence 57999999999999999975 1346799999999431 15799999999742 22234455
Q ss_pred -----cCCCcEEEEecCCCCCccccccc-ccccEEEEEEeee
Q 025868 210 -----PIEGMALIHIHGDKCMLHEARNV-IKGVKYIFRSDVV 245 (247)
Q Consensus 210 -----P~~G~aviF~~~d~~~lH~g~PV-~~G~Kyiirtdv~ 245 (247)
|+.|++|+|++. +++|++.|| ..|.|++|.+|+.
T Consensus 61 ~~~~~p~~g~~v~F~~~--~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 61 DFDIVPKPGRLVIFPSD--NSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp GGSEE-BTTEEEEEESC--TCEEEEEEE-EESEEEEEEEEEE
T ss_pred eccccCCCCEEEEEeCC--CCeecCcccCCCCCEEEEEEEEC
Confidence 999999999992 499999999 8999999999863
No 9
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=99.01 E-value=7.7e-10 Score=79.14 Aligned_cols=58 Identities=43% Similarity=0.773 Sum_probs=48.5
Q ss_pred cCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC
Q 025868 128 LNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR 201 (247)
Q Consensus 128 l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~ 201 (247)
.++.+++++|..|++|.+|+|...... +.+|.+|+|||||+.|. +++.||++.|....
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~~-~~~r~~t~llYLn~~w~---------------~d~~Gg~~~f~~~~ 66 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSSS-GKRRFLTLLLYLNEDWD---------------EDFGGGELFFDDDG 66 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCcccc-ccceeEEEEEEeccccc---------------CccCCcEEEEeCCC
Confidence 467899999999999999999986543 56789999999997763 77889999998653
No 10
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=99.00 E-value=3.6e-09 Score=90.99 Aligned_cols=180 Identities=18% Similarity=0.243 Sum_probs=113.5
Q ss_pred eeeecCCCEEEEcCCCCHHHHHHHHHHHHhC----CceeccCCCC--ccCCceeecceEEecCHH-HHHHHHHHh--hhh
Q 025868 43 VSRLKDTDLFTVQNFFTSAESKGFVKAAEAM----GFVHQGSLGP--LKGEAYRDNDRISVNDPV-LAETVWESG--LSK 113 (247)
Q Consensus 43 v~~~~~~~i~vi~~fLs~~EC~~Li~~~e~~----~~~~~~~~~~--~~~~~~R~~~~~~~~~~~-~~~~l~~ri--~~~ 113 (247)
|..+..-.+.++++||-.+.-..+.+.++.+ .|.+.....+ ...+++|.....|+.-.+ -...++-.+ +..
T Consensus 47 vp~mne~g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~ 126 (280)
T KOG3710|consen 47 VPCMNEYGICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDAFHSKDIRGDKITWVGGNEPGCETIMLLPSPIDS 126 (280)
T ss_pred hhhhhhcceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcCCcchhhccCCceEecCCCCCccceeeecccchh
Confidence 3344567999999999999877777766653 3443222111 123467766667775322 122222110 111
Q ss_pred hhhhh-hhhcccccccCCceEEEecC-CCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCC-C
Q 025868 114 LFTDI-KIRGKLAVGLNPNIRFYRYK-VGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEP-L 190 (247)
Q Consensus 114 ~~~~~-~~~~~~~~~l~e~~q~~rY~-~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~-~ 190 (247)
++... ...+....+- ..-.++.|. .|-.|-.|+|+... ..|-+|++.|||..| |+ .
T Consensus 127 ~i~h~~~r~~~~~~gR-tkAMVAcYPGNGtgYVrHVDNP~g----DGRcITcIYYlNqNW----------------D~kv 185 (280)
T KOG3710|consen 127 VILHCNGRLGSYIIGR-TKAMVACYPGNGTGYVRHVDNPHG----DGRCITCIYYLNQNW----------------DVKV 185 (280)
T ss_pred hhhhhccccccccccc-eeEEEEEecCCCceeeEeccCCCC----CceEEEEEEEcccCc----------------ceee
Confidence 11100 0011111121 123478896 55689999999743 346799999999887 55 6
Q ss_pred cCcceEEecCCCceeeEEecCCCcEEEEecCCCCCcccccccccccEEEEEEeee
Q 025868 191 VGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVV 245 (247)
Q Consensus 191 eGGeT~F~~~~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv~ 245 (247)
.||-+.+..........|.|+-++.|||++. .+-.|++.|+..+ ||.|+-|-+
T Consensus 186 ~Gg~Lri~pe~~~~~adieP~fdrLlffwSd-rrnPhev~Pa~~t-ryaitvwyf 238 (280)
T KOG3710|consen 186 HGGILRIFPEGSTTFADIEPKFDRLLFFWSD-RRNPHEVQPAYAT-RYAITVWYF 238 (280)
T ss_pred ccceeEeccCCCCcccccCcCCCeEEEEEec-CCCcccccccccc-ceEEEEEEe
Confidence 7887777655433456799999999999986 6779999999987 999998754
No 11
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=99.00 E-value=4.4e-09 Score=95.34 Aligned_cols=131 Identities=24% Similarity=0.380 Sum_probs=92.2
Q ss_pred CCceeecceEEecCHHHHHHHHHHhhhhhhhhhhhhc-ccccccCCceEEEecCCCCcccccccCCccCCCCceeEEEEE
Q 025868 86 GEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIRG-KLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLL 164 (247)
Q Consensus 86 ~~~~R~~~~~~~~~~~~~~~l~~ri~~~~~~~~~~~~-~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~l 164 (247)
....|.++++.+.+ ++...|++++ +.++.. ++.. ..-..+.+.+.|.+|..|++|..|.|..... ......++++
T Consensus 37 d~~~r~sk~iv~~~-~~~~dI~~~i-k~~l~~-~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~-~~n~~~y~Lv 112 (339)
T PF03336_consen 37 DHEFRKSKQIVIED-SLNDDIFSKI-KNLLYD-ELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD-SKNCLEYHLV 112 (339)
T ss_pred cccccccceEEEec-cchHHHHHHH-HHHHHH-HhhcceeEEEEcceEEEEEEccCcchhhhcccceec-cCCceEEEEE
Confidence 33478888877764 4445555553 222211 1111 2234556789999999999999999954432 2345679999
Q ss_pred EEecCccccccccccCCCCCCCCCCCcCcceEEecCCCceeeEEecCCCcEEEEecCCCCCcccccccccccEEEEEEee
Q 025868 165 IYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDV 244 (247)
Q Consensus 165 lYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv 244 (247)
|||+ .+.+||+|.|+-.+.... .+. .+.-|+|... +.|+..+|.+|.|+|+..||
T Consensus 113 LyL~-------------------~~~~GGktkiyi~~~~~t-vI~--~~~DvLFdKs---l~h~s~~V~~G~K~VAl~dV 167 (339)
T PF03336_consen 113 LYLN-------------------NPENGGKTKIYIDPNDNT-VIS--TSEDVLFDKS---LNHESIIVEEGRKIVALFDV 167 (339)
T ss_pred EEEe-------------------ccCCCceEEEEECCCCce-eee--ccccEEEecc---ccccceEeccCeEEEEEEEE
Confidence 9999 789999999985332211 244 4888999876 99999999999999999998
Q ss_pred e
Q 025868 245 V 245 (247)
Q Consensus 245 ~ 245 (247)
+
T Consensus 168 ~ 168 (339)
T PF03336_consen 168 I 168 (339)
T ss_pred E
Confidence 6
No 12
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=98.47 E-value=3.1e-06 Score=75.76 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=35.9
Q ss_pred CCCCCCCCCcceeeee---cCCCEEEEcCCCCHHHHHHHHHHHHhC
Q 025868 31 NWPIIKPKQDLRVSRL---KDTDLFTVQNFFTSAESKGFVKAAEAM 73 (247)
Q Consensus 31 ~~p~~~p~~~l~v~~~---~~~~i~vi~~fLs~~EC~~Li~~~e~~ 73 (247)
-||..+....|+-+++ ...+.+++++|||++||+.|.+.++..
T Consensus 7 ~~~~~~~~~~Lt~eqi~~f~~dGyvvl~~vls~eev~~lr~~i~~~ 52 (277)
T TIGR02408 7 VWGEGKAAGPLSAKQLQSYERDGFLLLENLFSDDEVAALLAEVERM 52 (277)
T ss_pred ecCCCCCCCCCCHHHHHHHHHCCEEECcccCCHHHHHHHHHHHHHH
Confidence 3888887777766654 578999999999999999999988774
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.1e-07 Score=77.91 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=76.5
Q ss_pred ceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcce-EEecCCC-----ce
Q 025868 131 NIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGET-VFYGSRN-----KL 204 (247)
Q Consensus 131 ~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT-~F~~~~~-----~~ 204 (247)
..|+.-|.+|.||..|-|.+.. ...|.+|.++|+|..| .++.|||+ .|+.... ..
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~---~~~R~~~yv~y~~r~w----------------kpe~GGeL~l~~s~~~~~~~~~~ 197 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD---KDIRLATYVYYLTREW----------------KPEYGGELRLFHSLQKNNTAADS 197 (252)
T ss_pred eeeeeEecCCceeEeecccCCC---ccceEEEEEeccCCCC----------------CcCCCCceeeccccccccccccc
Confidence 4789999999999999999854 2467899999999887 79999999 6654431 34
Q ss_pred eeEEecCCCcEEEEecCCCCCcccccccc-cccEEEEEEeeee
Q 025868 205 LAEVAPIEGMALIHIHGDKCMLHEARNVI-KGVKYIFRSDVVF 246 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~d~~~lH~g~PV~-~G~Kyiirtdv~y 246 (247)
...+.|.-+++++|-+.-.++.|+|.+|. .+.|.++..|+..
T Consensus 198 ~~ti~P~fn~lv~F~s~~~Hs~h~V~~~~~~~~RlsV~GW~r~ 240 (252)
T COG3751 198 FKTIAPVFNSLVFFKSRPSHSVHSVEEPYAAADRLSVTGWFRR 240 (252)
T ss_pred ccccCCCCceEEEEEecCCccceeccccccccceEEEeeEEec
Confidence 56799999999999875334667777754 3679999999864
No 14
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=1.5e-06 Score=71.45 Aligned_cols=90 Identities=24% Similarity=0.188 Sum_probs=69.6
Q ss_pred eEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC---CceeeEE
Q 025868 132 IRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR---NKLLAEV 208 (247)
Q Consensus 132 ~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~---~~~~~~V 208 (247)
..++||++|++=..|-|---..- . =+-+++-||.++ .+|+|||.++.++. +.+...+
T Consensus 64 plllrY~~gdyn~LHqdlyGe~v---F-PlQvv~lLs~Pg----------------~DftGGEFVltEQrPR~QSR~~V~ 123 (173)
T PF09859_consen 64 PLLLRYGPGDYNCLHQDLYGEHV---F-PLQVVILLSEPG----------------EDFTGGEFVLTEQRPRMQSRAMVL 123 (173)
T ss_pred hhhheeCCCCccccccCCCCCcc---c-CeEEEEEcCCCC----------------CcccCceEEEEEecCCccCccccC
Confidence 45789999999999998742211 1 156788999776 79999999998764 2345567
Q ss_pred ecCCCcEEEEecCC-----------CCCcccccccccccEEEEE
Q 025868 209 APIEGMALIHIHGD-----------KCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 209 ~P~~G~aviF~~~d-----------~~~lH~g~PV~~G~Kyiir 241 (247)
.+..|+++||.-.. -.+.|++.+|.+|.|+++-
T Consensus 124 ~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLg 167 (173)
T PF09859_consen 124 PLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLG 167 (173)
T ss_pred CcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEE
Confidence 88999999997321 2578999999999999874
No 15
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.23 E-value=3.4e-06 Score=63.27 Aligned_cols=83 Identities=20% Similarity=0.293 Sum_probs=51.9
Q ss_pred CceEEEecC---CCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCceee
Q 025868 130 PNIRFYRYK---VGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLA 206 (247)
Q Consensus 130 e~~q~~rY~---~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~~ 206 (247)
+.+++++|. .+..+.+|+|.. .+.+|++++ + ++|++.|...+ ..+
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~-------~~~~Til~~-~----------------------~~~gL~~~~~~--~~~ 49 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE-------DGLLTILFQ-D----------------------EVGGLQVRDDG--EWV 49 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES---------SSEEEEEE-T----------------------STS-EEEEETT--EEE
T ss_pred CEEEEEECCCcccCCceeCCCcCC-------CCeEEEEec-c----------------------cchheeccccc--ccc
Confidence 358999999 888999999995 235899888 4 67888888654 346
Q ss_pred EEecCCCcEEEEecC---------CCCCcccccccccccEEEEEEee
Q 025868 207 EVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFRSDV 244 (247)
Q Consensus 207 ~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiirtdv 244 (247)
.|.|..+.++++... ....+|+|+++.+|.||++..++
T Consensus 50 ~v~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 50 DVPPPPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp E----TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEE
T ss_pred CccCccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEE
Confidence 677777766666431 25689999999999999998764
No 16
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=98.00 E-value=0.0002 Score=64.63 Aligned_cols=193 Identities=13% Similarity=0.120 Sum_probs=96.1
Q ss_pred eeeeecCCCEEEEcCCCCHHHHHHHHHHHHhCCceeccCCCCccCCceeecceEEecCHHHHHHHHHHhhhhhhhhhhhh
Q 025868 42 RVSRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSLGPLKGEAYRDNDRISVNDPVLAETVWESGLSKLFTDIKIR 121 (247)
Q Consensus 42 ~v~~~~~~~i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~l~~ri~~~~~~~~~~~ 121 (247)
+++.+...+++++.++||++|++.|.+.++..-...............+.+......++.+.+.+...-+-.++. .+.
T Consensus 7 qi~~y~e~Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~ll 84 (288)
T TIGR01762 7 ERQSFEKNGFIGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLGGTNIANYDRHLDDDFLASHICRPEICHRVE--SIL 84 (288)
T ss_pred HHHHHHhCCEEeCcCCCCHHHHHHHHHHHHHHhhccccccccCCCCceeEeeeecccCHHHHHHhcCHHHHHHHH--HHh
Confidence 456677889999999999999999999886421111110000001112222112223334433333211111221 122
Q ss_pred cccccccCCceEEEecCCCCcccccccCCccCCCC-----------ceeEEEEEEEecCcccccc--ccccCCCCCCC--
Q 025868 122 GKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDG-----------KRTHYTLLIYLSGGLKAKA--KNDLSIHNDSS-- 186 (247)
Q Consensus 122 ~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~-----------~~r~~T~llYLN~~~~~~~--~~~~~~~~~~~-- 186 (247)
|.... +....-+.+...++.+.+|.|..+-...+ ..+.+|+.|.|.+....+- +-.-++++...
T Consensus 85 G~~v~-l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~ 163 (288)
T TIGR01762 85 GPNVL-CWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYD 163 (288)
T ss_pred CCcEE-eeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCC
Confidence 32221 11122355666555689999976532211 1357999999997654331 11112332211
Q ss_pred --------CC----CCcCcce-EEec-------------CCCceeeEEecCCCcEEEEecCCCCCccccccccccc--EE
Q 025868 187 --------PE----PLVGGET-VFYG-------------SRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGV--KY 238 (247)
Q Consensus 187 --------~d----~~eGGeT-~F~~-------------~~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~--Ky 238 (247)
++ ...|++. .|.. .+....+.+.-++|+++||... ++|++.|-++.. |.
T Consensus 164 ~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~~~---t~HgS~~N~S~~~~R~ 240 (288)
T TIGR01762 164 ETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWST---LMHASYPNSGESQMRM 240 (288)
T ss_pred cccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEECCC---ceecCCCCCCCCceEE
Confidence 00 0122221 0100 0001124566678999999765 999999998853 54
Q ss_pred EE
Q 025868 239 IF 240 (247)
Q Consensus 239 ii 240 (247)
.+
T Consensus 241 ~~ 242 (288)
T TIGR01762 241 GF 242 (288)
T ss_pred EE
Confidence 43
No 17
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=98.00 E-value=2.5e-05 Score=64.73 Aligned_cols=165 Identities=12% Similarity=0.077 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhCCce--eccCCCCc-cCCceeecceEEe-cCHHHHHHHHHH-hhhhhhhhhhhhc
Q 025868 48 DTDLFTVQNFFTSAESKGFVKAAEAMGFV--HQGSLGPL-KGEAYRDNDRISV-NDPVLAETVWES-GLSKLFTDIKIRG 122 (247)
Q Consensus 48 ~~~i~vi~~fLs~~EC~~Li~~~e~~~~~--~~~~~~~~-~~~~~R~~~~~~~-~~~~~~~~l~~r-i~~~~~~~~~~~~ 122 (247)
..++++++|||++++|+.|.+.++..... ........ ............+ .++.....+... .+..++.. +.|
T Consensus 3 ~~Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g 80 (211)
T PF05721_consen 3 RDGYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFFGDYTEQLAKSPNFYDLFLHPPRILDLVRA--LLG 80 (211)
T ss_dssp HHSEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCCCTCCCCGCCCHHHHHHHHTHHHHHHHHHH--HHT
T ss_pred CCcEEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHhhHHHHHHHHHH--hhC
Confidence 35789999999999999999998874100 00000000 0000000000111 222222222221 11222221 112
Q ss_pred cccc---ccCCceE-EEecC-CCCcc-cccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceE
Q 025868 123 KLAV---GLNPNIR-FYRYK-VGQRF-GQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETV 196 (247)
Q Consensus 123 ~~~~---~l~e~~q-~~rY~-~G~~f-~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~ 196 (247)
.... .+...++ +++-. +|... .+|.|..+.........+|+.|+|.+. . .+.|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~~~~~~~~~wi~L~d~-----------------~-~~~G~~~ 142 (211)
T PF05721_consen 81 SDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTDPPENQLTVWIALDDI-----------------T-PENGPLE 142 (211)
T ss_dssp SSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEESSSCEEEEEEESS-B-----------------B-TTCTCEE
T ss_pred CcchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccCCccceEEEEEeeccC-----------------C-cccCceE
Confidence 1111 0112221 23332 46665 999998765311134579999999965 2 3444455
Q ss_pred EecCCC----------------------------ceeeEEecCCCcEEEEecCCCCCcccccccccc
Q 025868 197 FYGSRN----------------------------KLLAEVAPIEGMALIHIHGDKCMLHEARNVIKG 235 (247)
Q Consensus 197 F~~~~~----------------------------~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G 235 (247)
+..... ...+.+..++|++|||.+. ++|++.|-.+.
T Consensus 143 v~pGSH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~~---~~H~s~~N~s~ 206 (211)
T PF05721_consen 143 VVPGSHKWGVEPHEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHSR---LIHGSGPNTSD 206 (211)
T ss_dssp EETTGCCSCCEEECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEETT---SEEEEE-B-SS
T ss_pred eecCCcCCCcccccccccccccccccccccccccCceEEeecCCCeEEEEcCC---ccccCCCCCCc
Confidence 543210 1225677889999999775 99999995543
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.98 E-value=2.7e-05 Score=59.18 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=44.6
Q ss_pred EEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCC-----------
Q 025868 134 FYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRN----------- 202 (247)
Q Consensus 134 ~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~----------- 202 (247)
++.+.+|++-.+|.=.. +.+|.++||+- +...|.+.|.....
T Consensus 4 ~ni~~~g~~~~~H~H~~--------s~~SgVyYv~~-------------------p~~~~~l~f~~~~~~~~~~~~~~~~ 56 (101)
T PF13759_consen 4 ANIYRKGGYNEPHNHPN--------SWLSGVYYVQV-------------------PEGSGPLRFHDPRGSFSFGAPFDNY 56 (101)
T ss_dssp EEEE-TT--EEEE--TT---------SEEEEEECE---------------------TTS-SEEEE-TTCCCGTTS----T
T ss_pred EEEeCCCCccCceECCC--------cCEEEEEEEEC-------------------CCCCCceeeeCCCccceeccccccc
Confidence 45677888877776432 35899999993 33556777764321
Q ss_pred ------ceeeEEecCCCcEEEEecCCCCCcccccccccc-cEEEEE
Q 025868 203 ------KLLAEVAPIEGMALIHIHGDKCMLHEARNVIKG-VKYIFR 241 (247)
Q Consensus 203 ------~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G-~Kyiir 241 (247)
.....++|+.|++||||+- +.|++.|-... .|++|-
T Consensus 57 ~~~~~~~~~~~~~p~~G~lvlFPs~---l~H~v~p~~~~~~Risis 99 (101)
T PF13759_consen 57 DQNDLNSPYYIVEPEEGDLVLFPSW---LWHGVPPNNSDEERISIS 99 (101)
T ss_dssp TTTCCC-SEEEE---TTEEEEEETT---SEEEE----SSS-EEEEE
T ss_pred ccCcccCceEEeCCCCCEEEEeCCC---CEEeccCcCCCCCEEEEE
Confidence 1346789999999999986 89999999975 688774
No 19
>PHA02866 Hypothetical protein; Provisional
Probab=97.63 E-value=0.00027 Score=63.39 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=69.8
Q ss_pred cCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCceeeE
Q 025868 128 LNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAE 207 (247)
Q Consensus 128 l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~~~ 207 (247)
+.+.+.+++|..|.+|..|.|....... ....++++|||+ .+..||+|.++-.+.. .
T Consensus 79 v~~~~t~vk~~kg~~fdn~~~~~~~~~~-~~~~Y~LvLyL~-------------------~p~~GGkt~iyv~~~t---~ 135 (333)
T PHA02866 79 VCEHLTIVKCFKGVGFDNRFSILTEDRH-RGREYTLVLHLS-------------------SPKNGGKTDVCVGDKT---V 135 (333)
T ss_pred EeeeEEEEEEecccccccceeEEEeccC-CceEEEEEEEEe-------------------ccccCCceEEEeCCCc---e
Confidence 3456889999999999999998653322 234699999999 7899999999954322 1
Q ss_pred EecCCCcEEEEecCCCCCcccccccccccEEEEEEeeee
Q 025868 208 VAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVVF 246 (247)
Q Consensus 208 V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv~y 246 (247)
+. .-.=++|.-+ +.|+..-|.+|.|.++-=+|++
T Consensus 136 i~--~~~DvLFDKs---l~h~S~~V~~G~K~Vali~V~i 169 (333)
T PHA02866 136 IS--TADDFLLEKR---SEQLSNVVQEGEKIVVAVKVFL 169 (333)
T ss_pred Ee--eccceeeecc---ccccceeeecCcEEEEEEEEEE
Confidence 22 2344677544 8999999999999999888876
No 20
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.001 Score=55.94 Aligned_cols=173 Identities=18% Similarity=0.177 Sum_probs=100.8
Q ss_pred ecCCCEEEEcCCCCHHHHHHHHHHHHhC-CceeccCCCCccCCceeecce--EEecCHHHHHHHHHHhhhhhhhh-----
Q 025868 46 LKDTDLFTVQNFFTSAESKGFVKAAEAM-GFVHQGSLGPLKGEAYRDNDR--ISVNDPVLAETVWESGLSKLFTD----- 117 (247)
Q Consensus 46 ~~~~~i~vi~~fLs~~EC~~Li~~~e~~-~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~~~l~~ri~~~~~~~----- 117 (247)
+......+....|+|++|+.+..+.-.. +|......+ ...++..+. +...-+.+.+.|-+.+-+.+.+.
T Consensus 20 l~~~gwa~~~~ll~P~~cr~~A~ly~r~~~~rs~v~ma---rhgfgrgey~yF~yPLp~~ierLr~aLYp~L~~iAnrW~ 96 (236)
T COG3826 20 LDARGWALTGPLLTPETCRGVADLYPRDEGFRSRVVMA---RHGFGRGEYKYFSYPLPDLIERLRQALYPRLLPIANRWN 96 (236)
T ss_pred hhcccceecccCCCccccchhhhhcccccccchhheee---hhhccccceeEecCCcHHHHHHHHHhhcccchHHHHHHH
Confidence 3445677889999999999998887542 333211110 011111111 22222444444333222222110
Q ss_pred --hh--------hhccc-----ccccCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCC
Q 025868 118 --IK--------IRGKL-----AVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIH 182 (247)
Q Consensus 118 --~~--------~~~~~-----~~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~ 182 (247)
.. +..+. .-.+-+...+++|.+|++=-.|-|---.. . --+-+.|-|++++
T Consensus 97 ~rlg~~~r~P~tlad~L~~CHaAGQ~RpTpLlLqYgpgD~NcLHQDLYGel---v-FPLQvailLsePg----------- 161 (236)
T COG3826 97 QRLGIDARYPATLADFLARCHAAGQVRPTPLLLQYGPGDYNCLHQDLYGEL---V-FPLQVAILLSEPG----------- 161 (236)
T ss_pred HHhCCCCCCchhHHHHHHHHHhccCccCCceeEEecCCccchhhhhhhhce---e-eeeeEEEeccCCC-----------
Confidence 00 00110 11122334588999999988999863211 1 1255677888765
Q ss_pred CCCCCCCCcCcceEEecCC---CceeeEEecCCCcEEEEecCC-----------CCCcccccccccccEEEEE
Q 025868 183 NDSSPEPLVGGETVFYGSR---NKLLAEVAPIEGMALIHIHGD-----------KCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 183 ~~~~~d~~eGGeT~F~~~~---~~~~~~V~P~~G~aviF~~~d-----------~~~lH~g~PV~~G~Kyiir 241 (247)
.+|.|||.++-++. +.....|..++|.+++|--.+ ..+.|.+.-+.+|.|+++-
T Consensus 162 -----~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~G 229 (236)
T COG3826 162 -----TDFTGGEFVLVEQRPRMQSRPTVVPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVG 229 (236)
T ss_pred -----CcccCceEEEEecccccccCCceeeccCCceEEEEeecCcccCccCccccchhcchhhhhcccceeeE
Confidence 79999999998763 234456777899999995221 2467999999999999874
No 21
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=97.41 E-value=0.0012 Score=61.36 Aligned_cols=165 Identities=15% Similarity=0.260 Sum_probs=105.1
Q ss_pred CEEEEcCCCCHHHHHHHHHHHHhC-CceeccCCCCccCCcee---ecceEEec---CHH---HHHHHHHHhhhhhhhhhh
Q 025868 50 DLFTVQNFFTSAESKGFVKAAEAM-GFVHQGSLGPLKGEAYR---DNDRISVN---DPV---LAETVWESGLSKLFTDIK 119 (247)
Q Consensus 50 ~i~vi~~fLs~~EC~~Li~~~e~~-~~~~~~~~~~~~~~~~R---~~~~~~~~---~~~---~~~~l~~ri~~~~~~~~~ 119 (247)
.-+++++|+++...+.+.+..... .|... .+.-|| +.+...++ .+. +.+.||+.. ...++.
T Consensus 37 ~h~~i~~~vnd~~l~~vrkei~~~~~f~~k------~tDlyr~~QtgdL~nl~~le~p~lf~~r~~Lyke~-r~~~q~-- 107 (476)
T KOG3844|consen 37 NHFIIRDFVNDSLLRVVRKEIHGSIHFTEK------ETDLYRVLQTGDLANLEGLEFPALFSFRDSLYKEA-RGEIQD-- 107 (476)
T ss_pred cceeeeccCCHHHHHHHHHHHhhccchhhh------cchhhheeccccccccccccchhHHHHHHHHHHHH-HHHHHh--
Confidence 778999999987777777555442 44321 011122 22222222 222 334555432 222221
Q ss_pred hhcccccccCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEec
Q 025868 120 IRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYG 199 (247)
Q Consensus 120 ~~~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~ 199 (247)
+.|... +---.+.+..|..|.+.-.|-|... .|.+++++||-+. +|+..-||++..+.
T Consensus 108 vtg~~s-~sk~Dms~s~Y~kgd~LL~HDD~ie------tRriaFilYL~~~---------------Dwds~~GG~L~Lf~ 165 (476)
T KOG3844|consen 108 VTGGLS-TSKIDMSGSYYRKGDHLLCHDDVIE------TRRIAFILYLVDP---------------DWDSEYGGELRLFP 165 (476)
T ss_pred ccCccc-cceeeeceeeeeccceecccccccc------ceEEEEEEEecCc---------------ccccccCceeEecc
Confidence 222211 1112577899999999999999873 2458999999954 36766699999887
Q ss_pred CCC-----ceeeEEecCCCcEEEEecCCCCCccccccccccc-EEEEEEeeee
Q 025868 200 SRN-----KLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGV-KYIFRSDVVF 246 (247)
Q Consensus 200 ~~~-----~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~-Kyiirtdv~y 246 (247)
.+. ....++.|+-.+.++|.-. +-+.|.|..|.+-. |..|..|..|
T Consensus 166 ~d~~~~P~s~~asl~P~~Nql~fFeVs-p~SFH~V~Ev~sde~RlSIsGWfH~ 217 (476)
T KOG3844|consen 166 DDCPSQPKSVAASLEPQWNQLVFFEVS-PISFHDVEEVLSDEPRLSISGWFHF 217 (476)
T ss_pred cccccCccchhhccCcccceEEEEEec-ccchhhHHHHhccCcceeEeeeecC
Confidence 542 1234588999999999743 35899999999865 6999999876
No 22
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.41 E-value=0.0011 Score=56.97 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=60.4
Q ss_pred EEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC-----------
Q 025868 133 RFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR----------- 201 (247)
Q Consensus 133 q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~----------- 201 (247)
=++++.+|++=..|.=.. ..+|-++||+. +..+|.+.|....
T Consensus 99 W~ni~~~Gg~h~~H~Hp~--------~~lSgvyYl~~-------------------p~~~g~~~f~~p~~~~~~~~~~~~ 151 (201)
T TIGR02466 99 WVNILPQGGTHSPHLHPG--------SVISGTYYVQT-------------------PENCGAIKFEDPRLDDMMAAPMRI 151 (201)
T ss_pred eEEEcCCCCccCceECCC--------ceEEEEEEEeC-------------------CCCCCceeEecCcchhhhcccccc
Confidence 367788998776665432 36899999993 3456777775421
Q ss_pred ------CceeeEEecCCCcEEEEecCCCCCccccccccc-ccEEEEEEeee
Q 025868 202 ------NKLLAEVAPIEGMALIHIHGDKCMLHEARNVIK-GVKYIFRSDVV 245 (247)
Q Consensus 202 ------~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~-G~Kyiirtdv~ 245 (247)
....+.|+|+.|++|+||+- ++|++.|-.. +.|++|-=|+-
T Consensus 152 ~~~~~~~~~~~~v~P~~G~lvlFPS~---L~H~v~p~~~~~~RISiSFNl~ 199 (201)
T TIGR02466 152 PNAKRAVQRFVYVPPQEGRVLLFESW---LRHEVPPNESEEERISVSFNYA 199 (201)
T ss_pred CccccccCccEEECCCCCeEEEECCC---CceecCCCCCCCCEEEEEEeeE
Confidence 01234689999999999997 8999999986 57998876653
No 23
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=96.88 E-value=0.043 Score=45.82 Aligned_cols=78 Identities=21% Similarity=0.113 Sum_probs=40.4
Q ss_pred ceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecC-CCceeeEEe
Q 025868 131 NIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGS-RNKLLAEVA 209 (247)
Q Consensus 131 ~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~-~~~~~~~V~ 209 (247)
...++.|.+|+...+|.|.... .. +..++|+-|--. ....|-.. +.+....|.
T Consensus 98 ~~liN~Y~~g~~i~~H~D~~~~-~~-~~~I~slSLG~~------------------------~~~~f~~~~~~~~~~~~~ 151 (194)
T PF13532_consen 98 QCLINYYRDGSGIGPHSDDEEY-GF-GPPIASLSLGSS------------------------RVFRFRNKSDDDEPIEVP 151 (194)
T ss_dssp EEEEEEESSTT-EEEE---TTC--C-CSEEEEEEEES-------------------------EEEEEEECGGTS-EEEEE
T ss_pred EEEEEecCCCCCcCCCCCcccc-cC-CCcEEEEEEccC------------------------ceEEEeeccCCCccEEEE
Confidence 3567899999999999999833 11 233444433222 11122221 112346777
Q ss_pred cCCCcEEEEecCC-CCCcccccccccc
Q 025868 210 PIEGMALIHIHGD-KCMLHEARNVIKG 235 (247)
Q Consensus 210 P~~G~aviF~~~d-~~~lH~g~PV~~G 235 (247)
...|+++|+...- ..+ |++.++..+
T Consensus 152 L~~gsl~vm~g~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 152 LPPGSLLVMSGEARYDW-HGIPPVKKD 177 (194)
T ss_dssp E-TTEEEEEETTHHHHE-EEE-S-SCE
T ss_pred cCCCCEEEeChHHhhhe-eEcccccCC
Confidence 7899999997531 235 999999885
No 24
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=96.66 E-value=0.0065 Score=50.79 Aligned_cols=75 Identities=24% Similarity=0.175 Sum_probs=56.9
Q ss_pred cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC-CceeeEEecCCCcEEEEec
Q 025868 142 RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR-NKLLAEVAPIEGMALIHIH 220 (247)
Q Consensus 142 ~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~-~~~~~~V~P~~G~aviF~~ 220 (247)
....|.|..... .-+++++-|.. .++.||...++..+ .-.+++|.|..|++|+|..
T Consensus 86 ~t~~HrD~~~~~-----~~~~~~~t~~~------------------gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~ 142 (171)
T PF12851_consen 86 CTHSHRDTHNMP-----NGYDVLCTLGR------------------GDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCA 142 (171)
T ss_pred CccceecCCCCC-----CCeEEEEecCC------------------ccccCceEeccccccccCCEEEecCCCcEEEEcc
Confidence 356788986432 13677777762 34999999999722 1235899999999999986
Q ss_pred CCCCCccccccccc-----ccEEEEE
Q 025868 221 GDKCMLHEARNVIK-----GVKYIFR 241 (247)
Q Consensus 221 ~d~~~lH~g~PV~~-----G~Kyiir 241 (247)
. ..+|++.||.. |+|+.+.
T Consensus 143 ~--~~~Hgvtpv~~~~~~~~~R~slv 166 (171)
T PF12851_consen 143 K--RELHGVTPVESPNRNHGTRISLV 166 (171)
T ss_pred c--ceeeecCcccCCCCCCCeEEEEE
Confidence 4 58999999997 9999875
No 25
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=94.36 E-value=2.1 Score=37.12 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=81.7
Q ss_pred eecCCCEEEEcCCCCHHHHHHHHHHHHh----CCcee-ccCCCCcc---------------CCceeecce------EEec
Q 025868 45 RLKDTDLFTVQNFFTSAESKGFVKAAEA----MGFVH-QGSLGPLK---------------GEAYRDNDR------ISVN 98 (247)
Q Consensus 45 ~~~~~~i~vi~~fLs~~EC~~Li~~~e~----~~~~~-~~~~~~~~---------------~~~~R~~~~------~~~~ 98 (247)
+...++++++++|. .++.++|++.+.+ ..|.. ...++... ...||-+.. -|-.
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~ 92 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA 92 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC
Confidence 33557899999995 8888888877766 23332 11111000 012332211 1222
Q ss_pred CHHHHHHHHHHhhhhhhhhhhhhcccccccCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccc
Q 025868 99 DPVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKND 178 (247)
Q Consensus 99 ~~~~~~~l~~ri~~~~~~~~~~~~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~ 178 (247)
-|+....|++++... .+... -..+..-+++|.+|+.-.+|.|..... . . ..++-|+
T Consensus 93 ~P~~l~~L~~~~~~~-------~~~~~-~~p~a~LvN~Y~~G~~mg~H~D~~E~~-~-~----~pI~SvS---------- 148 (213)
T PRK15401 93 MPASFLALAQRAAAA-------AGFPG-FQPDACLINRYAPGAKLSLHQDKDERD-F-R----APIVSVS---------- 148 (213)
T ss_pred chHHHHHHHHHHHHH-------cCCCC-CCCCEEEEEeccCcCccccccCCCccc-C-C----CCEEEEe----------
Confidence 244455666654211 11100 011345688999999999999974221 1 1 1222223
Q ss_pred cCCCCCCCCCCCcCcceEEecC---CCceeeEEecCCCcEEEEecCCCCCcccccccccc
Q 025868 179 LSIHNDSSPEPLVGGETVFYGS---RNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKG 235 (247)
Q Consensus 179 ~~~~~~~~~d~~eGGeT~F~~~---~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G 235 (247)
-|.+-.|... ..+...+|....|++||+........|++.++..|
T Consensus 149 ------------LG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~ 196 (213)
T PRK15401 149 ------------LGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAG 196 (213)
T ss_pred ------------CCCCeEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCCCC
Confidence 2222333211 11224678888999999964334567999988765
No 26
>PHA02923 hypothetical protein; Provisional
Probab=94.13 E-value=0.34 Score=43.83 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=55.1
Q ss_pred cCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCceeeE
Q 025868 128 LNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAE 207 (247)
Q Consensus 128 l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~~~ 207 (247)
+...+.+.+|++|.+ .|. ..+ ..-+.++|||+ .+..||++.++..+. .
T Consensus 65 V~n~iT~ikYekgd~--~~l-----~~~--~~~y~LvLyL~-------------------~p~~GGt~i~~~~~t----~ 112 (315)
T PHA02923 65 VSSTISFIKYNPFND--TTL-----TDD--NMGYYLVIYLN-------------------RPKSGKTLIYPTPET----V 112 (315)
T ss_pred EeceEEEEEEcCCCc--cee-----ecC--ceEEEEEEEEe-------------------ccCCCCeEEEecCCC----e
Confidence 344688999999995 111 011 14588999999 678899999887542 1
Q ss_pred EecCCCcEEEEecCCCCCcccccccccccEEEEEE
Q 025868 208 VAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRS 242 (247)
Q Consensus 208 V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirt 242 (247)
+. .-.=++|.-+ +.|+..-|.+|.|.|+-.
T Consensus 113 i~--~~~DvLFdKs---l~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 113 IT--SSEDIMFSKS---LNFRFENVKRGYKLVMCS 142 (315)
T ss_pred Ee--eccceeeecc---cccceeeeecCcEEEEEE
Confidence 32 2344677544 899999999999998765
No 27
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=92.14 E-value=1.2 Score=39.71 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=66.8
Q ss_pred ccCCceEEEecCCCCccc-ccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCcee
Q 025868 127 GLNPNIRFYRYKVGQRFG-QHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLL 205 (247)
Q Consensus 127 ~l~e~~q~~rY~~G~~f~-~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~ 205 (247)
-.++.+++..|..|+-++ .|.+.. +...+++-|. ....||...+........
T Consensus 47 ~~~~~i~i~~f~~~~~~~~~~~~~~--------~~sr~lvCi~-------------------sakkGG~iii~~~~~~~k 99 (266)
T PF06822_consen 47 YVNNLISIQVFDKGQCYKSRIQDNS--------SLSRILVCIQ-------------------SAKKGGCIIIRNTISNDK 99 (266)
T ss_pred EecCcEEEEEEeCCCceeccccCCC--------cceeEEEEee-------------------ccccCCeEEEeecccCCc
Confidence 345678999999998775 333332 3578999999 788999999987643334
Q ss_pred eEEecCCCcEEEEecCCCCCcccccccccccEEEEEEee
Q 025868 206 AEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDV 244 (247)
Q Consensus 206 ~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv 244 (247)
..+.|..|.||+-..- .--.+.+|++|.-.++.-|+
T Consensus 100 kii~~~~~~aVlLspl---~~y~Vs~V~~G~~i~i~l~i 135 (266)
T PF06822_consen 100 KIITPNQNMAVLLSPL---ADYDVSNVTKGSMIIIVLDI 135 (266)
T ss_pred eEEecCCCeEEEecch---hheEEEEecCCcEEEEEEEe
Confidence 6789999999999764 56788999999877776554
No 28
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=87.38 E-value=0.12 Score=49.15 Aligned_cols=60 Identities=28% Similarity=0.399 Sum_probs=48.2
Q ss_pred eeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCc-eeeEEecCCCcEEEEecCCCCCccccccccccc
Q 025868 158 RTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNK-LLAEVAPIEGMALIHIHGDKCMLHEARNVIKGV 236 (247)
Q Consensus 158 ~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~-~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~ 236 (247)
.+.+..++|+| |+++|||+.|...+.. ....++|+.|+.+-|.++. ...|.+.+|++|.
T Consensus 365 ~~~~~a~~~~~-------------------dd~~~~el~~t~~d~~t~~a~~k~~~~re~~~~~g~-e~~~~~~~~~kg~ 424 (471)
T KOG4459|consen 365 ELDYFALLYLN-------------------DDFEGGELLFTEPDAKTYTAISKPECGRECAFSSGA-ENPHGVKAVTKGL 424 (471)
T ss_pred HHHhhccHhhc-------------------CccccccceecCCcccchhhccccccccchhhhccc-cCccchhhhhhhh
Confidence 44678889999 8999999999876532 2346799999999999873 4589999999996
Q ss_pred E
Q 025868 237 K 237 (247)
Q Consensus 237 K 237 (247)
+
T Consensus 425 e 425 (471)
T KOG4459|consen 425 E 425 (471)
T ss_pred H
Confidence 4
No 29
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=86.62 E-value=5.3 Score=32.83 Aligned_cols=80 Identities=21% Similarity=0.181 Sum_probs=51.4
Q ss_pred ceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCceeeEEec
Q 025868 131 NIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAEVAP 210 (247)
Q Consensus 131 ~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~~~V~P 210 (247)
...|.+-.+|....+|+|.... .+++.|=|.. + .+|....-.. ..+.=
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~-------~lR~Hl~L~~-------------------p-~~~~~~~v~~-----~~~~w 128 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNL-------RLRLHLPLIV-------------------P-NPGCYIRVGG-----ETRHW 128 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TT-------EEEEEEEEC----------------------STTEEEEETT-----EEEB-
T ss_pred hEEEEEECCCCEECCeeCCCCc-------ceEEEEEEEc-------------------C-CCCeEEEECC-----eEEEe
Confidence 4678888999999999998532 2788888872 2 1222222211 23444
Q ss_pred CCCcEEEEecCCCCCcccccccccccEEEEEEeee
Q 025868 211 IEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDVV 245 (247)
Q Consensus 211 ~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv~ 245 (247)
+.|.+++|... ..|++---....|++|--|+.
T Consensus 129 ~~G~~~~fD~s---~~H~~~N~~~~~Rv~L~vD~~ 160 (163)
T PF05118_consen 129 REGECWVFDDS---FEHEVWNNGDEDRVVLIVDFW 160 (163)
T ss_dssp -CTEEEEE-TT---S-EEEEESSSS-EEEEEEEEE
T ss_pred ccCcEEEEeCC---EEEEEEeCCCCCEEEEEEEee
Confidence 68999999876 899999888889999988874
No 30
>PHA02985 hypothetical protein; Provisional
Probab=86.13 E-value=5.2 Score=35.65 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=62.2
Q ss_pred cCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCceeeE
Q 025868 128 LNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKLLAE 207 (247)
Q Consensus 128 l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~~~~ 207 (247)
....+++..|+.|+.|..-.+. +...+++-+. .+..||..............
T Consensus 55 ~~n~i~i~~f~~~~~~~~~~~~---------~~SkilICiq-------------------sAkkGG~iIi~~~~~~~K~i 106 (271)
T PHA02985 55 VKNLISIEVFNKKKKYYQNIPS---------RLSKIIICIQ-------------------SAKKGGCIIIINNITNNKKI 106 (271)
T ss_pred ecceeEEEEEcCCcceEeeCCC---------CceeEEEEEe-------------------ecccCCEEEEecccccCceE
Confidence 3456888888888654322222 3467888999 78999999996544333356
Q ss_pred EecCCCcEEEEecCCCCCcccccccccccEEEEEEee
Q 025868 208 VAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDV 244 (247)
Q Consensus 208 V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv 244 (247)
+.|..|.||+-..- .--.+.+|++|.-.++.-|+
T Consensus 107 i~~~~n~aVlLSPL---s~Y~Vs~V~kGsli~i~l~i 140 (271)
T PHA02985 107 ITLNINHIIILSPL---SKYTVSKVSKGSLIIIVLDI 140 (271)
T ss_pred EecCCCeEEEecch---hhceEEEecCCcEEEEEEEe
Confidence 89999999999764 66789999999877766554
No 31
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=85.40 E-value=5.6 Score=35.98 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=50.5
Q ss_pred CceEEEecCCC-----C-cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCc
Q 025868 130 PNIRFYRYKVG-----Q-RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNK 203 (247)
Q Consensus 130 e~~q~~rY~~G-----~-~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~ 203 (247)
..+|+++|.+- . -..+|.|.+ .+|+|+. + ...| .+.......+
T Consensus 149 ~~lr~~~YP~~p~~~~~~g~~~HtD~g---------~lTlL~q-d--------------------~~~~-GLqV~~~~~g 197 (300)
T PLN02365 149 SQFRINKYNFTPETVGSSGVQIHTDSG---------FLTILQD-D--------------------ENVG-GLEVMDPSSG 197 (300)
T ss_pred cceeeeecCCCCCccccccccCccCCC---------ceEEEec-C--------------------CCcC-ceEEEECCCC
Confidence 45899999532 1 245788875 3677733 2 1133 3555433123
Q ss_pred eeeEEecCCCcEEEEec--------C-CCCCcccccccccccEEEEE
Q 025868 204 LLAEVAPIEGMALIHIH--------G-DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 204 ~~~~V~P~~G~aviF~~--------~-d~~~lH~g~PV~~G~Kyiir 241 (247)
.-+.|.|.+|.+||--. + ...++|.|.......||.|-
T Consensus 198 ~Wi~V~p~pga~vVNiGD~l~~~TNG~~~St~HRVv~~~~~~R~Si~ 244 (300)
T PLN02365 198 EFVPVDPLPGTLLVNLGDVATAWSNGRLCNVKHRVQCKEATMRISIA 244 (300)
T ss_pred eEEecCCCCCeEEEEhhHHHHHHhCCceecccceeEcCCCCCEEEEE
Confidence 46889999999998742 1 14689999765555788764
No 32
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.74 E-value=9.6 Score=33.88 Aligned_cols=77 Identities=27% Similarity=0.259 Sum_probs=49.5
Q ss_pred ceEEEecCCC----C--cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVG----Q--RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G----~--~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++++|.+- . -..+|+|.. .+|+|+- + + .|| +.+.. .+.
T Consensus 117 ~lrl~~YP~~~~~~~~~g~~~HtD~g---------~lTlL~q-d-------------------~--v~G-LqV~~--~g~ 162 (262)
T PLN03001 117 NITVSYYPPCPQPELTLGLQSHSDFG---------AITLLIQ-D-------------------D--VEG-LQLLK--DAE 162 (262)
T ss_pred hheeecCCCCCCcccccCCcCCcCCC---------eeEEEEe-C-------------------C--CCc-eEEee--CCe
Confidence 4788899752 1 256888875 4787644 3 2 243 45532 234
Q ss_pred eeEEecCCCcEEEEec--------C-CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIH--------G-DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~--------~-d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--. + .+..+|.|.-.....||.|-
T Consensus 163 Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~HRVv~~~~~~R~Sia 208 (262)
T PLN03001 163 WLMVPPISDAILIIIADQTEIITNGNYKSAQHRAIANANKARLSVA 208 (262)
T ss_pred EEECCCCCCcEEEEccHHHHHHhCCccccccceEEcCCCCCEEEEE
Confidence 6889999999888732 1 14678999855556688774
No 33
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=83.63 E-value=11 Score=35.14 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=50.6
Q ss_pred ceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++.+|.+-. -..+|+|.. .+|+|+- + + . |.+.+...+++.
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g---------~lTlL~Q-d-------------------~--v-~GLQV~~~~~~~ 243 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG---------TITLLLQ-D-------------------Q--V-GGLQATRDGGKT 243 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC---------eEEEEec-C-------------------C--C-CceEEEECCCCe
Confidence 47888997521 245788885 4677643 3 1 2 345554433335
Q ss_pred eeEEecCCCcEEEEec-------C--CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIH-------G--DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~-------~--d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|..|.+||--. + ...++|.|.....+.||.|-
T Consensus 244 Wi~Vpp~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Si~ 289 (358)
T PLN02515 244 WITVQPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSNCSRLSIA 289 (358)
T ss_pred EEECCCCCCeEEEEccHHHHHHhCCeeeeecceEECCCCCCEEEEE
Confidence 7889999999888642 1 15689998655556788764
No 34
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=83.36 E-value=1.5 Score=37.40 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=28.7
Q ss_pred CcCcceEEecCCCceeeEE-ecCCCcEEEEecCCCCCccccccccc
Q 025868 190 LVGGETVFYGSRNKLLAEV-APIEGMALIHIHGDKCMLHEARNVIK 234 (247)
Q Consensus 190 ~eGGeT~F~~~~~~~~~~V-~P~~G~aviF~~~d~~~lH~g~PV~~ 234 (247)
.+||+|.++..+.+..... .-..|..+++.- ..++|.+.||..
T Consensus 136 i~GG~s~i~~~~~~~~~~~~l~~p~d~l~~~D--~~~~H~vtpI~~ 179 (195)
T PF10014_consen 136 IEGGESQIYDNDKEILFFFTLLEPGDTLLVDD--RRVWHYVTPIRP 179 (195)
T ss_dssp EEE--EEEEETTSSEEEEE---STTEEEEEET--TTEEEEE--EEE
T ss_pred ccCceEEEEeCCCCcceEEEecCCCCEEEEeC--CcceECCCceec
Confidence 4999999988776554444 446899999963 469999999985
No 35
>PLN02904 oxidoreductase
Probab=82.43 E-value=13 Score=34.61 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=50.2
Q ss_pred ceEEEecCCCC----c--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ----R--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~----~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++++|.+-. . ..+|.|.. .+|+|+ . ++ | .+.+...+ +.
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g---------~lTlL~--q-------------------d~--~-GLQV~~~~-g~ 254 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFG---------SLTILL--Q-------------------SS--Q-GLQIMDCN-KN 254 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCC---------ceEEEe--c-------------------CC--C-eeeEEeCC-CC
Confidence 58899997531 2 45888885 478774 3 22 3 45554432 24
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--.. .+..+|+|.......||.|-
T Consensus 255 Wi~V~p~pgalVVNiGD~Le~~TNG~~kSt~HRVv~~~~~~R~Si~ 300 (357)
T PLN02904 255 WVCVPYIEGALIVQLGDQVEVMSNGIYKSVVHRVTVNKDYKRLSFA 300 (357)
T ss_pred EEECCCCCCeEEEEccHHHHHHhCCeeeccCCcccCCCCCCEEEEE
Confidence 68899999999987421 15689999644455688764
No 36
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=82.25 E-value=13 Score=34.36 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=50.6
Q ss_pred CceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCc
Q 025868 130 PNIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNK 203 (247)
Q Consensus 130 e~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~ 203 (247)
..+|+++|.+-. -..+|+|.+ .+|+|+- + ..| .+.+.....+
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g---------~lTlL~q-d---------------------~v~-GLQV~~~~~g 240 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGG---------ALTVLAQ-D---------------------DVG-GLQISRRSDG 240 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCC---------eEEEEec-C---------------------CCC-ceEEeecCCC
Confidence 358999997531 256788875 4677632 2 233 4555432223
Q ss_pred eeeEEecCCCcEEEEec-------C--CCCCcccccccccccEEEEE
Q 025868 204 LLAEVAPIEGMALIHIH-------G--DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 204 ~~~~V~P~~G~aviF~~-------~--d~~~lH~g~PV~~G~Kyiir 241 (247)
.-+.|.|.+|.+||--. + .+..+|+|.......||.|-
T Consensus 241 ~Wi~V~p~pg~~vVNiGD~L~~~Tng~~~St~HRVv~~~~~~R~Si~ 287 (345)
T PLN02750 241 EWIPVKPIPDAFIINIGNCMQVWTNDLYWSAEHRVVVNSQKERFSIP 287 (345)
T ss_pred eEEEccCCCCeEEEEhHHHHHHHhCCeeecccceeccCCCCCEEEEE
Confidence 57889999999888632 1 14689999865556688763
No 37
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=81.50 E-value=6.2 Score=36.54 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=50.2
Q ss_pred ceEEEecCCC----C--cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVG----Q--RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G----~--~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+- . -..+|+|.+ .+|+|+-=+ ..|| +.+.. .+.
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g---------~lTlL~qd~---------------------~v~G-LQV~~--~g~ 250 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGS---------AFTLLLPDK---------------------DVEG-LQFLK--DGK 250 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCC---------ceEEEEecC---------------------CCCc-eeEeE--CCe
Confidence 4899999642 1 245788885 367664322 2333 44432 234
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
.+.|.|.+|.+||--.. ....+|+|.+...+.||.|-
T Consensus 251 Wi~V~p~pg~lVVNiGD~Le~~Tng~~kSt~HRVv~~~~~~R~Si~ 296 (348)
T PLN00417 251 WYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVA 296 (348)
T ss_pred EEECCCCCCcEEEEcChHHHHHhCCeecccceEEecCCCCCEEEEE
Confidence 78899999999887421 15689999766566788763
No 38
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.16 E-value=2.1 Score=36.12 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=49.4
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhCC---ceecc-----CCCCccCCceeecceEEec--CHHHHHHHHHHhhhhhhhh
Q 025868 48 DTDLFTVQNFFTSAESKGFVKAAEAMG---FVHQG-----SLGPLKGEAYRDNDRISVN--DPVLAETVWESGLSKLFTD 117 (247)
Q Consensus 48 ~~~i~vi~~fLs~~EC~~Li~~~e~~~---~~~~~-----~~~~~~~~~~R~~~~~~~~--~~~~~~~l~~ri~~~~~~~ 117 (247)
.+.++.|+||+++||-..+..-.+... |..-. ..+.... ....+. -+...+.+...+ ..
T Consensus 11 ~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGvvh------~~glipeelP~wLq~~v~ki-nn---- 79 (224)
T KOG3200|consen 11 APTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGVVH------KTGLIPEELPPWLQYYVDKI-NN---- 79 (224)
T ss_pred cceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCccc------cCCcCccccCHHHHHHHHHh-hc----
Confidence 357789999999999999999888742 22100 0011100 001111 122223333332 10
Q ss_pred hhhhcccccccCCceEEEecCCCCcccccccCCc
Q 025868 118 IKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESV 151 (247)
Q Consensus 118 ~~~~~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~ 151 (247)
-..+.+-.....++.|.+||-..||.|+..
T Consensus 80 ----lglF~s~~NHVLVNeY~pgqGImPHtDGPa 109 (224)
T KOG3200|consen 80 ----LGLFKSPANHVLVNEYLPGQGIMPHTDGPA 109 (224)
T ss_pred ----ccccCCCcceeEeecccCCCCcCcCCCCCc
Confidence 112222223466889999999999999974
No 39
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=80.91 E-value=7.9 Score=35.20 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=47.6
Q ss_pred ceEEEecCCC----Cc--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVG----QR--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G----~~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+- .. ..+|+|.. .+|+|+--+ ..|| +.+.. .+.
T Consensus 154 ~lrl~~YP~~~~~~~~~G~~~HtD~g---------~lTlL~q~~---------------------~v~G-LqV~~--~g~ 200 (303)
T PLN02403 154 GTKVAKYPECPRPELVRGLREHTDAG---------GIILLLQDD---------------------QVPG-LEFLK--DGK 200 (303)
T ss_pred eeeeEcCCCCCCcccccCccCccCCC---------eEEEEEecC---------------------CCCc-eEecc--CCe
Confidence 3789999652 12 45888885 356664332 1233 44432 234
Q ss_pred eeEEecCCC-cEEEEecCC----------CCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEG-MALIHIHGD----------KCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G-~aviF~~~d----------~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+| .+||-- +| +..+|+|.....+.||.+-
T Consensus 201 Wi~V~p~p~~~lvVNv-GD~L~~~Tng~~~S~~HRVv~~~~~~R~Si~ 247 (303)
T PLN02403 201 WVPIPPSKNNTIFVNT-GDQLEVLSNGRYKSTLHRVMADKNGSRLSIA 247 (303)
T ss_pred EEECCCCCCCEEEEEe-hHHHHHHhCCeeecccceeecCCCCCEEEEE
Confidence 678999985 555542 22 5689999876667788764
No 40
>PLN02485 oxidoreductase
Probab=80.56 E-value=6.1 Score=36.13 Aligned_cols=79 Identities=18% Similarity=0.123 Sum_probs=49.2
Q ss_pred ceEEEecCCCC--------c--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecC
Q 025868 131 NIRFYRYKVGQ--------R--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGS 200 (247)
Q Consensus 131 ~~q~~rY~~G~--------~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~ 200 (247)
.+++++|.+-. . ..+|+|.. .+|+|+ . ++..|| +.+...
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g---------~lTlL~--q-------------------d~~~~G-LqV~~~ 233 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYG---------LLTLVN--Q-------------------DDDITA-LQVRNL 233 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCC---------eEEEEe--c-------------------cCCCCe-eeEEcC
Confidence 48999997532 1 45788875 367753 2 122333 454432
Q ss_pred CCceeeEEecCCCcEEEEec-------C--CCCCcccccccccccEEEEE
Q 025868 201 RNKLLAEVAPIEGMALIHIH-------G--DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 201 ~~~~~~~V~P~~G~aviF~~-------~--d~~~lH~g~PV~~G~Kyiir 241 (247)
+ +.-+.|.|.+|.+||--. + ....+|.|.......||.|-
T Consensus 234 ~-g~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~HRVv~~~~~~R~Si~ 282 (329)
T PLN02485 234 S-GEWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTLHRVINNSPKYRVCVA 282 (329)
T ss_pred C-CcEEECCCCCCcEEEEhHHHHHHHHCCEeeCCCceecCCCCCCeEEEE
Confidence 2 346889999999988732 1 14678999865555687763
No 41
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=77.99 E-value=11 Score=34.70 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=50.6
Q ss_pred ceEEEecCCCC------c--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCC
Q 025868 131 NIRFYRYKVGQ------R--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRN 202 (247)
Q Consensus 131 ~~q~~rY~~G~------~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~ 202 (247)
.+|+++|.+-. . ..+|+|.. .+|+|+- + ..|| +.....+
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~g---------~lTlL~Q-d---------------------~v~G-LQV~~~~- 225 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDPQ---------LISLLRS-N---------------------DTAG-LQICVKD- 225 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCCC---------ceEEEEe-C---------------------CCCc-eEEEeCC-
Confidence 58999997531 1 35788874 4677743 3 1333 5553222
Q ss_pred ceeeEEecCCCcEEEEec-------C--CCCCcccccccccccEEEEE
Q 025868 203 KLLAEVAPIEGMALIHIH-------G--DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 203 ~~~~~V~P~~G~aviF~~-------~--d~~~lH~g~PV~~G~Kyiir 241 (247)
+.-+.|.|..|.+||--. + .+..+|+|.......||.|-
T Consensus 226 g~Wi~Vpp~pga~VVNiGD~l~~wTNg~~kSt~HRVv~~~~~~R~Sia 273 (335)
T PLN02156 226 GTWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMI 273 (335)
T ss_pred CCEEEccCCCCcEEEEhHHHHHHHhCCeeeccceeeecCCCCCEEEEE
Confidence 347889999999998742 1 15689999866566788764
No 42
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=77.91 E-value=10 Score=35.04 Aligned_cols=77 Identities=27% Similarity=0.364 Sum_probs=49.5
Q ss_pred ceEEEecCCCC----c--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ----R--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~----~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+-. . ..+|.|.. .+|+|+- + + .|| +.... .+.
T Consensus 201 ~lRl~~YPp~~~~~~~~g~~aHTD~g---------~lTlL~Q-d-------------------~--v~G-LQV~~--~g~ 246 (341)
T PLN02984 201 VIRVYRYPQCSNEAEAPGMEVHTDSS---------VISILNQ-D-------------------E--VGG-LEVMK--DGE 246 (341)
T ss_pred eEEEEeCCCCCCcccccCccCccCCC---------ceEEEEe-C-------------------C--CCC-eeEee--CCc
Confidence 58999997632 2 45788885 3677753 3 2 344 55542 235
Q ss_pred eeEEecCCCcEEEEecC---------CCCCccccc-ccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEAR-NVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~-PV~~G~Kyiir 241 (247)
-+.|.|..|.+||--.. .+.++|.|. +-....||.+-
T Consensus 247 Wv~V~p~pgalVVNiGD~Le~wTNg~~kSt~HRVv~~~~~~~R~Sia 293 (341)
T PLN02984 247 WFNVKPIANTLVVNLGDMMQVISDDEYKSVLHRVGKRNKKKERYSIC 293 (341)
T ss_pred eEECCCCCCeEEEECChhhhhhcCCeeeCCCCccccCCCCCCeEEEE
Confidence 78899999999997421 146889994 33345688763
No 43
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=76.91 E-value=21 Score=33.07 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=49.1
Q ss_pred ceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++++|.+-. -..+|+|.+ .+|+|+- + ..|| +.+.. .+.
T Consensus 198 ~lrl~~YPp~~~~~~~~G~~~HtD~g---------~lTlL~Q-d---------------------~v~G-LQV~~--~g~ 243 (348)
T PLN02912 198 HMAINYYPPCPQPELTYGLPGHKDAN---------LITVLLQ-D---------------------EVSG-LQVFK--DGK 243 (348)
T ss_pred eeeeeecCCCCChhhcCCcCCCcCCC---------ceEEEEE-C---------------------CCCc-eEEEE--CCc
Confidence 58899998631 245888885 3677743 2 1333 55543 234
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--.. .+..+|+|.....+.||.|-
T Consensus 244 Wi~V~p~pgalvVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia 289 (348)
T PLN02912 244 WIAVNPIPNTFIVNLGDQMQVISNDKYKSVLHRAVVNTDKERISIP 289 (348)
T ss_pred EEECCCcCCeEEEEcCHHHHHHhCCEEEcccccccCCCCCCEEEEE
Confidence 78899999999887421 15689999644456688763
No 44
>PLN02276 gibberellin 20-oxidase
Probab=76.52 E-value=26 Score=32.60 Aligned_cols=78 Identities=24% Similarity=0.276 Sum_probs=49.9
Q ss_pred CceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCc
Q 025868 130 PNIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNK 203 (247)
Q Consensus 130 e~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~ 203 (247)
..+++++|.+-. -..+|+|.. .+|+|+- + ..|| +.... .+
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g---------~lTlL~Q-d---------------------~v~G-LQV~~--~g 251 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPT---------SLTILHQ-D---------------------QVGG-LQVFV--DN 251 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCc---------eeEEEEe-c---------------------CCCc-eEEEE--CC
Confidence 358899997531 245788875 3677742 2 2333 54442 23
Q ss_pred eeeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 204 LLAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 204 ~~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
.-+.|.|.+|.+||.-.. ....+|+|.......||.|-
T Consensus 252 ~Wi~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia 298 (361)
T PLN02276 252 KWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLA 298 (361)
T ss_pred EEEEcCCCCCeEEEEcHHHHHHHhCCccccccceeecCCCCCEEEEE
Confidence 578899999999998521 15689998654456688764
No 45
>PLN02947 oxidoreductase
Probab=76.24 E-value=12 Score=35.13 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=49.3
Q ss_pred ceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++++|.+-. -..+|+|.+ .+|+|+- + + .| .+.+.. + +.
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g---------~lTlL~Q-d-------------------~--v~-GLQV~~-~-g~ 271 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYG---------FLTLLLQ-D-------------------E--VE-GLQIMH-A-GR 271 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCC---------ceEEEEe-c-------------------C--CC-CeeEeE-C-CE
Confidence 57888998642 245788875 4787754 3 2 23 344443 2 35
Q ss_pred eeEEecCCCcEEEEecC-------C--CCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG-------D--KCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~-------d--~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--.. + +..+|+|.......||.|-
T Consensus 272 Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRVv~~~~~~R~Sia 317 (374)
T PLN02947 272 WVTVEPIPGSFVVNVGDHLEIFSNGRYKSVLHRVRVNSTKPRISVA 317 (374)
T ss_pred EEeCCCCCCeEEEEeCceeeeeeCCEEeccccccccCCCCCEEEEE
Confidence 78899999988886421 1 5689999644455688764
No 46
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=76.19 E-value=7 Score=35.84 Aligned_cols=79 Identities=29% Similarity=0.384 Sum_probs=54.4
Q ss_pred CCceEEEecCC------CCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCC
Q 025868 129 NPNIRFYRYKV------GQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRN 202 (247)
Q Consensus 129 ~e~~q~~rY~~------G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~ 202 (247)
++.+|++||.. ++.-+.|.|.. .+|+| - ++..||==+.+..
T Consensus 173 ~~~~RLlrYP~~~~~~~~~~~GaHtD~G---------~lTLl---~-------------------Qd~~~GLqv~~~~-- 219 (322)
T COG3491 173 NSVLRLLRYPSRPAREGADGVGAHTDYG---------LLTLL---F-------------------QDDVGGLEVRPPN-- 219 (322)
T ss_pred hheEEEEecCCCcccccccccccccCCC---------eEEEE---E-------------------ecccCCeEEecCC--
Confidence 45799999982 23346777775 34554 3 4557777676653
Q ss_pred ceeeEEecCCCcEEEEecC-------C--CCCcccccccccccEEEE
Q 025868 203 KLLAEVAPIEGMALIHIHG-------D--KCMLHEARNVIKGVKYIF 240 (247)
Q Consensus 203 ~~~~~V~P~~G~aviF~~~-------d--~~~lH~g~PV~~G~Kyii 240 (247)
+.-+.|.|..|..||+... + ..+.|.|+-...=.||.|
T Consensus 220 g~Wl~v~P~pgtlvVNiGdmLe~~Tng~lrST~HRV~~~~~~~R~Si 266 (322)
T COG3491 220 GGWLDVPPIPGTLVVNIGDMLERWTNGRLRSTVHRVRNPPGVDRYSI 266 (322)
T ss_pred CCeeECCCCCCeEEEeHHHHHHHHhCCeeccccceeecCCCccceee
Confidence 2468899999999999631 1 468899987775467765
No 47
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=76.15 E-value=3.4 Score=35.41 Aligned_cols=37 Identities=19% Similarity=0.052 Sum_probs=28.2
Q ss_pred eeEEecCCCcEEEEecCCCCCccccccc--ccccEEEEEEe
Q 025868 205 LAEVAPIEGMALIHIHGDKCMLHEARNV--IKGVKYIFRSD 243 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~d~~~lH~g~PV--~~G~Kyiirtd 243 (247)
...+.-++|++|||.|. +++|+..+. ..|.|+.+|.|
T Consensus 220 ~~~~~~~~GDlli~dN~--~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 220 TYRHRWQPGDLLIWDNH--RVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp EEEEE--TTEEEEEETT--TEEEEE--E-STTSSEEEEEEE
T ss_pred cccccCCCceEEEEcCC--eeEecCCCCCCCCCCEEEEEeC
Confidence 45677889999999874 699999999 67889999986
No 48
>PTZ00273 oxidase reductase; Provisional
Probab=76.12 E-value=23 Score=32.23 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=47.7
Q ss_pred ceEEEecCCCC-----c--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCc
Q 025868 131 NIRFYRYKVGQ-----R--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNK 203 (247)
Q Consensus 131 ~~q~~rY~~G~-----~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~ 203 (247)
.+++++|.+.. . -.+|+|.+ .+|+|+ . +. .|| +.+...+ +
T Consensus 178 ~lrl~~YP~~~~~~~~~~g~~~HTD~g---------~lTlL~--q-------------------d~-~~G-LqV~~~~-g 224 (320)
T PTZ00273 178 VFRMKHYPALPQTKKGRTVCGEHTDYG---------IITLLY--Q-------------------DS-VGG-LQVRNLS-G 224 (320)
T ss_pred eeeeeecCCCCCccccCcccccccCCC---------eEEEEe--c-------------------CC-CCc-eEEECCC-C
Confidence 47899997531 1 35788875 467774 2 22 344 5554322 3
Q ss_pred eeeEEecCCCcEEEEec-------C--CCCCcccccccccccEEEEE
Q 025868 204 LLAEVAPIEGMALIHIH-------G--DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 204 ~~~~V~P~~G~aviF~~-------~--d~~~lH~g~PV~~G~Kyiir 241 (247)
.-+.|.|.+|.+||--. + ....+|.|... ...||.|-
T Consensus 225 ~Wi~V~p~pg~lvVNvGD~l~~~TnG~~kSt~HRVv~~-~~~R~Si~ 270 (320)
T PTZ00273 225 EWMDVPPLEGSFVVNIGDMMEMWSNGRYRSTPHRVVNT-GVERYSMP 270 (320)
T ss_pred CEEeCCCCCCeEEEEHHHHHHHHHCCeeeCCCccccCC-CCCeEEEE
Confidence 46889999999988732 1 14689999743 34677663
No 49
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=75.32 E-value=11 Score=34.52 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=49.3
Q ss_pred ceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+-. -..+|+|.. .+|+|+-=. ..|| +.... .+.
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g---------~lTlL~qd~---------------------~v~G-LQV~~--~g~ 205 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAG---------GIILLFQDD---------------------KVSG-LQLLK--DGE 205 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCC---------eEEEEEecC---------------------CCCC-cCccc--CCe
Confidence 47899997521 255888885 467774322 2233 33332 234
Q ss_pred eeEEecCCCcEEEEec-------C--CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIH-------G--DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~-------~--d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--. + .+..+|+|.....+.||.|-
T Consensus 206 Wi~V~p~pg~lvVNiGD~l~~~Tng~~kS~~HRVv~~~~~~R~Si~ 251 (321)
T PLN02299 206 WVDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVVAQTDGNRMSIA 251 (321)
T ss_pred EEECCCCCCeEEEEeCHHHHHHhCCceecccceeecCCCCCEEEEE
Confidence 6789999999988742 1 15689999755566788763
No 50
>PLN02216 protein SRG1
Probab=74.78 E-value=15 Score=34.23 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=49.6
Q ss_pred ceEEEecCCC----C--cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVG----Q--RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G----~--~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+- . -..+|+|.+ .+|+|+--+ ..|| +.+.. .+.
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g---------~lTlL~q~~---------------------~v~G-LQV~~--~g~ 257 (357)
T PLN02216 211 SIRMNYYPPCPQPDQVIGLTPHSDAV---------GLTILLQVN---------------------EVEG-LQIKK--DGK 257 (357)
T ss_pred eeEEeecCCCCCcccccCccCcccCc---------eEEEEEecC---------------------CCCc-eeEEE--CCE
Confidence 5889999753 1 245788874 467775544 1333 44432 235
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--.. .+..+|+|.......||.|-
T Consensus 258 Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~ 303 (357)
T PLN02216 258 WVSVKPLPNALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVA 303 (357)
T ss_pred EEECCCCCCeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEE
Confidence 78899999999887421 15689998644455688763
No 51
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=74.27 E-value=14 Score=34.00 Aligned_cols=79 Identities=29% Similarity=0.403 Sum_probs=54.7
Q ss_pred ceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+-. -+.+|.|.. .+|+|+.=| ..||=-++. .++.
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~---------~lTiLlqd~---------------------~V~GLQv~~--~dg~ 224 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS---------FLTILLQDD---------------------DVGGLQVFT--KDGK 224 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC---------ceEEEEccC---------------------CcCceEEEe--cCCe
Confidence 68899998541 367898885 367776543 456666665 2235
Q ss_pred eeEEecCCCcEEEEecCC----------CCCcccccccccccEEEEEE
Q 025868 205 LAEVAPIEGMALIHIHGD----------KCMLHEARNVIKGVKYIFRS 242 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~d----------~~~lH~g~PV~~G~Kyiirt 242 (247)
.+.|.|.+|..||=- || +..+|+|..-....||.+-+
T Consensus 225 Wi~V~P~p~a~vVNi-GD~l~~lSNG~ykSv~HRV~~n~~~~R~Sia~ 271 (322)
T KOG0143|consen 225 WIDVPPIPGAFVVNI-GDMLQILSNGRYKSVLHRVVVNGEKERISVAF 271 (322)
T ss_pred EEECCCCCCCEEEEc-ccHHhHhhCCcccceEEEEEeCCCCceEEEEE
Confidence 789999997776652 22 57889999888888887643
No 52
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=73.49 E-value=5.1 Score=35.05 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=32.1
Q ss_pred eeEEecCCCcEEEEecCCCCCccccccccc---ccEEEEEEee
Q 025868 205 LAEVAPIEGMALIHIHGDKCMLHEARNVIK---GVKYIFRSDV 244 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~d~~~lH~g~PV~~---G~Kyiirtdv 244 (247)
.+.++-++|++|||.|. +++|+-.+... +.||..|++|
T Consensus 219 ~~~~~l~~Gdivi~DN~--r~lHgR~~f~~~~~~~R~L~r~~i 259 (262)
T cd00250 219 QLTVKLEPGDLLIFDNR--RVLHGRTAFSPRYGGDRWLKGCYV 259 (262)
T ss_pred EEEEEcCCCCEEEEech--hhhcCCCCCCCCCCCceEEEEEEe
Confidence 46778889999999874 79999998775 5799999987
No 53
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=73.49 E-value=5.9 Score=34.98 Aligned_cols=98 Identities=17% Similarity=0.254 Sum_probs=60.3
Q ss_pred eeecCCCEEEEcCCCCHHHHHHHHHHHHhCCceeccCC------CCccCC---ceeecceEEecCHHHHHHHHHHhhhhh
Q 025868 44 SRLKDTDLFTVQNFFTSAESKGFVKAAEAMGFVHQGSL------GPLKGE---AYRDNDRISVNDPVLAETVWESGLSKL 114 (247)
Q Consensus 44 ~~~~~~~i~vi~~fLs~~EC~~Li~~~e~~~~~~~~~~------~~~~~~---~~R~~~~~~~~~~~~~~~l~~ri~~~~ 114 (247)
..|.=+++.+++||||.+|=..|++......|..+.++ +|..+- ..|+.. ..--|++++.+.+|+ ..+
T Consensus 67 ~~~p~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~--F~G~P~~~~~v~rrm-~~y 143 (306)
T KOG3959|consen 67 GSIPIPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDT--FVGMPEYADMVLRRM-SEY 143 (306)
T ss_pred CccccCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCc--ccCCchHHHHHHHHh-hcc
Confidence 34455799999999999999999999998877654322 232221 122221 222477888888875 321
Q ss_pred hhhhhhhcccccccCCceEE-EecC--CCCcccccccCCcc
Q 025868 115 FTDIKIRGKLAVGLNPNIRF-YRYK--VGQRFGQHIDESVN 152 (247)
Q Consensus 115 ~~~~~~~~~~~~~l~e~~q~-~rY~--~G~~f~~H~D~~~~ 152 (247)
- .+.|+++.. |+ +-|. .|.-..||.|..+.
T Consensus 144 p---~l~gfqp~E-----qCnLeYep~kgsaIdpH~DD~Wi 176 (306)
T KOG3959|consen 144 P---VLKGFQPFE-----QCNLEYEPVKGSAIDPHQDDMWI 176 (306)
T ss_pred c---hhhccCcHH-----HcCcccccccCCccCccccchhh
Confidence 1 123443321 12 3576 56788999998864
No 54
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=72.78 E-value=14 Score=34.31 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=50.4
Q ss_pred ceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++++|.+-. -..+|+|.. .+|+|+- + + .|| +.+... ++.
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g---------~lTiL~Q-d-------------------~--v~G-LQV~~~-~~~ 257 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS---------LLTILYQ-S-------------------N--TSG-LQVFRE-GVG 257 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC---------cEEEEec-C-------------------C--CCC-ceEECC-CCE
Confidence 58899997631 256888885 4788764 3 2 233 454432 224
Q ss_pred eeEEecCCCcEEEEec-------C--CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIH-------G--DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~-------~--d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--. + .+..+|+|..-....||.|-
T Consensus 258 Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~~~~~R~Sia 303 (358)
T PLN02254 258 WVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRHRISVA 303 (358)
T ss_pred EEEcccCCCCEEEEhHHHHHHHhCCeeccccceeecCCCCCEEEEE
Confidence 7889999999999742 1 15689999543344687764
No 55
>PLN02997 flavonol synthase
Probab=72.41 E-value=17 Score=33.41 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=48.9
Q ss_pred ceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+-. -..+|.|.+ .+|+|+- + ..|| +.+... +.
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g---------~lTlL~Q-d---------------------~v~G-LQV~~~--g~ 229 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG---------AIALLIP-N---------------------EVPG-LQAFKD--EQ 229 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC---------ceEEEec-C---------------------CCCC-EEEeEC--Cc
Confidence 48899997531 256888885 4777743 3 1344 444332 34
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIF 240 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyii 240 (247)
-+.|.|.+|.+||--.. ....+|+|..-....||.+
T Consensus 230 Wi~V~p~pgalvVNiGD~Le~~TNG~~kSt~HRVv~~~~~~R~Si 274 (325)
T PLN02997 230 WLDLNYINSAVVVIIGDQLMRMTNGRFKNVLHRAKTDKERLRISW 274 (325)
T ss_pred EEECCCCCCeEEEEechHHHHHhCCccccccceeeCCCCCCEEEE
Confidence 68899999988887421 1467899975444568865
No 56
>PLN02704 flavonol synthase
Probab=71.31 E-value=11 Score=34.72 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=48.0
Q ss_pred ceEEEecCCCC----c--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ----R--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~----~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++++|.+-. . ..+|+|.. .+|+|+- + ..| .+.+.. .+.
T Consensus 200 ~lrl~~YP~~~~~~~~~g~~~HtD~g---------~lTlL~q-d---------------------~v~-GLQV~~--~g~ 245 (335)
T PLN02704 200 LLKINYYPPCPRPDLALGVVAHTDMS---------AITILVP-N---------------------EVQ-GLQVFR--DDH 245 (335)
T ss_pred hhhhhcCCCCCCcccccCccCccCCc---------ceEEEec-C---------------------CCC-ceeEeE--CCE
Confidence 36788897521 2 45788875 3676654 3 133 344432 234
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--.. .+..+|+|.......||.|-
T Consensus 246 Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~HRVv~~~~~~R~Si~ 291 (335)
T PLN02704 246 WFDVKYIPNALVIHIGDQIEILSNGKYKSVLHRTTVNKEKTRMSWP 291 (335)
T ss_pred EEeCCCCCCeEEEEechHHHHHhCCeeecccceeecCCCCCeEEEE
Confidence 68899999998887421 15689999654445688764
No 57
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=69.91 E-value=48 Score=30.44 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=49.0
Q ss_pred ceEEEecCCCC------cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVGQ------RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G~------~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++++|.+-. -..+|+|.+ .+|+|+- . ...|| +.... .+.
T Consensus 191 ~lrl~~YP~~~~~~~~~g~~~HTD~g---------~lTlL~q-d--------------------~~v~G-LQV~~--~g~ 237 (337)
T PLN02639 191 HMAVNYYPPCPEPELTYGLPAHTDPN---------ALTILLQ-D--------------------QQVAG-LQVLK--DGK 237 (337)
T ss_pred EEEEEcCCCCCCcccccCCCCCcCCC---------ceEEEEe-c--------------------CCcCc-eEeec--CCe
Confidence 58899997631 146788885 3677642 2 11333 44432 235
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
-+.|.|.+|.+||--.. ....+|+|-......||.|-
T Consensus 238 Wi~V~p~pg~lVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia 283 (337)
T PLN02639 238 WVAVNPHPGAFVINIGDQLQALSNGRYKSVWHRAVVNTDKERMSVA 283 (337)
T ss_pred EEeccCCCCeEEEechhHHHHHhCCeeeccCcccccCCCCCEEEEE
Confidence 78899999999987421 14689999644345688763
No 58
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=69.54 E-value=51 Score=30.65 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=49.6
Q ss_pred ceEEEecCCC----Cc--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVG----QR--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G----~~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+- .. ..+|+|.+ .+|+|+- . ++..|| +.+... +.
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g---------~lTlL~q-d-------------------~~~v~G-LQV~~~--g~ 259 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGS---------ALTVLQQ-G-------------------KGSCVG-LQILKD--NT 259 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCc---------eeEEEEe-C-------------------CCCCCC-eeeeeC--CE
Confidence 5788999742 22 35788885 4677753 2 112344 444332 35
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
.+.|.|.+|.+||--.. .+..+|+|.......||.+-
T Consensus 260 Wi~V~p~pgalVVNiGD~L~~~SNG~~kS~~HRVv~~~~~~R~Sia 305 (361)
T PLN02758 260 WVPVHPVPNALVINIGDTLEVLTNGKYKSVEHRAVTNKEKDRLSIV 305 (361)
T ss_pred EEeCCCCCCeEEEEccchhhhhcCCeeecccceeecCCCCCEEEEE
Confidence 68899999999887431 15689999754445688764
No 59
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=67.89 E-value=18 Score=33.58 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=48.6
Q ss_pred ceEEEecCCC----Cc--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVG----QR--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G----~~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+++++|.+- .. ..+|+|.+ .+|+|+. + . .| .+.+.. .+.
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g---------~lTlL~q-d--------------------~-v~-GLQV~~--~g~ 257 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVS---------ALTFILH-N--------------------M-VP-GLQVLY--EGK 257 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCC---------ceEEEee-C--------------------C-CC-ceeEeE--CCE
Confidence 4788999742 12 46888885 4788742 3 1 23 355543 235
Q ss_pred eeEEecCCCcEEEEecC---------CCCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG---------DKCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~---------d~~~lH~g~PV~~G~Kyiir 241 (247)
.+.|.|.+|.+||--.. .+..+|+|..--...||.|-
T Consensus 258 Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Si~ 303 (360)
T PLN03178 258 WVTAKCVPDSIVVHIGDTLEILSNGRYKSILHRGLVNKEKVRISWA 303 (360)
T ss_pred EEEcCCCCCeEEEEccHHHHHHhCCccccccceeecCCCCCeEEEE
Confidence 78899999998886421 15689998533345688764
No 60
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=67.57 E-value=24 Score=34.53 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=24.8
Q ss_pred EEecCCCcEEEEecCCCCCcccccccc------cccEEEEE
Q 025868 207 EVAPIEGMALIHIHGDKCMLHEARNVI------KGVKYIFR 241 (247)
Q Consensus 207 ~V~P~~G~aviF~~~d~~~lH~g~PV~------~G~Kyiir 241 (247)
+|.-+.|++|+|||. +.|.+.|.. .|.+=+|.
T Consensus 436 sv~~~~gr~i~fPN~---~qhrv~~f~L~D~tkpGhrkil~ 473 (501)
T PF14033_consen 436 SVETKEGRLIAFPNT---LQHRVSPFELADPTKPGHRKILA 473 (501)
T ss_pred cEEccCCcEEeccch---hhhccCCccccCCCCCCcEEEEE
Confidence 577789999999997 789998653 57655554
No 61
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=64.82 E-value=31 Score=31.69 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=48.3
Q ss_pred ceEEEecCCCC-----c--ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC--
Q 025868 131 NIRFYRYKVGQ-----R--FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR-- 201 (247)
Q Consensus 131 ~~q~~rY~~G~-----~--f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~-- 201 (247)
.+|+++|.+-. . ..+|.|.+ .+|+|+- + . .|| +......
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g---------~lTlL~q-d--------------------~-v~G-LQV~~~~~~ 230 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFG---------MMTLLAT-D--------------------G-VMG-LQICKDKNA 230 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCC---------eEEEEee-C--------------------C-CCc-eEEecCCCC
Confidence 58999997631 2 46888885 4788732 3 1 343 4443221
Q ss_pred -CceeeEEecCCCcEEEEec-------CC--CCCcccccccccccEEEEE
Q 025868 202 -NKLLAEVAPIEGMALIHIH-------GD--KCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 202 -~~~~~~V~P~~G~aviF~~-------~d--~~~lH~g~PV~~G~Kyiir 241 (247)
.+.-+.|.|.+|.+||--. ++ ...+|+|..- ...||.|-
T Consensus 231 ~~g~Wi~Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRVv~~-~~~R~Sia 279 (332)
T PLN03002 231 MPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGN-GQERYSIP 279 (332)
T ss_pred CCCcEEECCCCCCeEEEEHHHHHHHHhCCeeECcCCeecCC-CCCeeEEE
Confidence 1346789999999998742 11 4678999532 34687763
No 62
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.87 E-value=14 Score=31.59 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=30.9
Q ss_pred CCCcCcceEEecCCCcee--eEEecCCCcEEEEecCCCCCccccccccc
Q 025868 188 EPLVGGETVFYGSRNKLL--AEVAPIEGMALIHIHGDKCMLHEARNVIK 234 (247)
Q Consensus 188 d~~eGGeT~F~~~~~~~~--~~V~P~~G~aviF~~~d~~~lH~g~PV~~ 234 (247)
+--.||||.+|..+++-. .+| -..|.+|+-.. .+++|.+||+..
T Consensus 156 ~NI~gGet~lY~~~~~~p~f~kv-l~pGe~~~l~D--h~~~H~~tpi~p 201 (226)
T COG4340 156 QNIDGGETDLYAPDGASPGFFKV-LAPGEAVFLDD--HRVLHGVTPIVP 201 (226)
T ss_pred ccccCceEEEEccCCCCcceEEe-ccCCcEEEecc--chhcccccceec
Confidence 567999999998765422 233 34688876642 469999999874
No 63
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=62.84 E-value=30 Score=28.72 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.9
Q ss_pred ceEEEecCCCCcccccccCC
Q 025868 131 NIRFYRYKVGQRFGQHIDES 150 (247)
Q Consensus 131 ~~q~~rY~~G~~f~~H~D~~ 150 (247)
..-++.|.+|+.-.+|.|..
T Consensus 96 ~~LvN~Y~~Gd~mg~H~D~~ 115 (169)
T TIGR00568 96 ACLVNRYAPGATLSLHQDRD 115 (169)
T ss_pred EEEEEeecCCCccccccccc
Confidence 45588999999999999963
No 64
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=62.44 E-value=32 Score=32.01 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=47.5
Q ss_pred ceEEEecCCC----C--cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCCCce
Q 025868 131 NIRFYRYKVG----Q--RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSRNKL 204 (247)
Q Consensus 131 ~~q~~rY~~G----~--~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~~~~ 204 (247)
.+|+++|.+- . -..+|+|.+ .+|+|+-=+ ..|| +.+.. .+.
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g---------~lTlL~q~~---------------------~v~G-LQV~~--~g~ 260 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPG---------GMTILLPDD---------------------NVAG-LQVRR--DDA 260 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCc---------eEEEEeeCC---------------------CCCc-ceeeE--CCE
Confidence 5788899642 1 256888885 367764322 1233 44432 234
Q ss_pred eeEEecCCCcEEEEecC-------C--CCCcccccccccccEEEEE
Q 025868 205 LAEVAPIEGMALIHIHG-------D--KCMLHEARNVIKGVKYIFR 241 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~-------d--~~~lH~g~PV~~G~Kyiir 241 (247)
.+.|.|.+|.+||--.. + +.++|+|.......||.|-
T Consensus 261 W~~V~p~pgalVVNiGD~l~~~Tng~~kSt~HRVv~~~~~~R~Sia 306 (362)
T PLN02393 261 WITVKPVPDAFIVNIGDQIQVLSNAIYKSVEHRVIVNSAKERVSLA 306 (362)
T ss_pred EEECCCCCCeEEEEcchhhHhhcCCeeeccceecccCCCCCEEEEE
Confidence 68899999999887421 1 4689999544344687763
No 65
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.72 E-value=26 Score=31.87 Aligned_cols=71 Identities=18% Similarity=0.069 Sum_probs=44.9
Q ss_pred ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC-----------C-----ceee
Q 025868 143 FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR-----------N-----KLLA 206 (247)
Q Consensus 143 f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~-----------~-----~~~~ 206 (247)
=.+|.|..+.. .+..-...+.+=|.|. ..+-|.|.+.... . +..+
T Consensus 133 t~~HqD~~~~~-~~~~~lV~~wiAl~d~------------------~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~ 193 (299)
T COG5285 133 TRWHQDYPLVS-PGYPALVNAWIALCDF------------------TEDNGATLVVPGSHKWDVIPERPDHETYLERNAV 193 (299)
T ss_pred ccccccccccc-CCccceEEEEEecccc------------------ccccCceEEEecccccccCCCCCCccchhhhcce
Confidence 46899965433 3334467888888854 2445555553221 0 1245
Q ss_pred EEecCCCcEEEEecCCCCCcccccccccc
Q 025868 207 EVAPIEGMALIHIHGDKCMLHEARNVIKG 235 (247)
Q Consensus 207 ~V~P~~G~aviF~~~d~~~lH~g~PV~~G 235 (247)
.|.-.+|++|+|... ++|+..-=..+
T Consensus 194 pv~lekGDallF~~~---L~HaA~aNrT~ 219 (299)
T COG5285 194 PVELEKGDALLFNGS---LWHAAGANRTS 219 (299)
T ss_pred eeeecCCCEEEEcch---hhhhhhcCCCC
Confidence 677789999999764 88988766665
No 66
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.40 E-value=1.4e+02 Score=27.63 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhcccccccCCceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCcccccccccc
Q 025868 100 PVLAETVWESGLSKLFTDIKIRGKLAVGLNPNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDL 179 (247)
Q Consensus 100 ~~~~~~l~~ri~~~~~~~~~~~~~~~~~l~e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~ 179 (247)
|.+...+++|++.+-+ .+. .-..+-++.|++|+.-.+|+|...-. +. ++.+.+|++.-+ .=
T Consensus 189 Ps~~~~ii~rlv~~~~--------ip~-~pd~~~iN~Ye~G~~i~ph~~~~~F~----~P-i~slS~lSe~~m-----~F 249 (323)
T KOG4176|consen 189 PSLFKSIIDRLVSWRV--------IPE-RPDQCTINFYEPGDGIPPHIDHSAFL----DP-ISSLSFLSECTM-----EF 249 (323)
T ss_pred chHHHHHHHHhhhhcc--------CCC-CCCeeEEEeeCCCCCCCCCCChHHhc----Cc-eEEEEeecceeE-----Ee
Confidence 5666777777654311 111 12345688999999999999776432 22 344445663311 00
Q ss_pred CCCCCCCC-CCCcCcceEEecCCCceeeEEecCCCcEEEEecC-CCCCcccccccccccEEEE
Q 025868 180 SIHNDSSP-EPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHG-DKCMLHEARNVIKGVKYIF 240 (247)
Q Consensus 180 ~~~~~~~~-d~~eGGeT~F~~~~~~~~~~V~P~~G~aviF~~~-d~~~lH~g~PV~~G~Kyii 240 (247)
.-+-...+ ..+.| ...+.-+.|.+++-+.. ..-..|++++ .++.|..|
T Consensus 250 g~~~~~~~~~~~~g------------~~s~p~~~g~~lvi~~~~ad~~~~~~~~-~~~kRisi 299 (323)
T KOG4176|consen 250 GHGLLSDNIGNFRG------------SLSLPLRYGSVLVIRGRSADVAPHCIRP-SRNKRISI 299 (323)
T ss_pred cccccccCcccccc------------ccccccccCeEEEeCCCcccccccccCC-CCCceEEE
Confidence 00000000 11222 14455567888887642 1246788888 45555443
No 67
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=43.15 E-value=17 Score=32.31 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=23.9
Q ss_pred cccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEec
Q 025868 144 GQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYG 199 (247)
Q Consensus 144 ~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~ 199 (247)
.+|.|..+..... .+++|.-+. -+.+||+|.|-+
T Consensus 95 ~wHtD~sy~~~pp---~~~~L~~~~-------------------~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIETPP---LGAILAAKQ-------------------LPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCeeCCC---ceeEEEEEe-------------------cCCCCCccHhhh
Confidence 5999999864322 366666666 456899999953
No 68
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=42.36 E-value=28 Score=30.36 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=27.7
Q ss_pred CcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEec
Q 025868 141 QRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYG 199 (247)
Q Consensus 141 ~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~ 199 (247)
....+|+|..+... .-.+.+|..|. .+.+||+|.|-.
T Consensus 94 ~~l~~HtD~~y~~~---pp~~~~L~cl~-------------------~~~~GG~T~~vd 130 (262)
T cd00250 94 TLLPLHTDLAYHEY---RPGLQILHCLR-------------------NTATGGATLLVD 130 (262)
T ss_pred CCcCccccCCCCCC---CCceEEEEEec-------------------cCCCCCcceeee
Confidence 56679999987542 22477888888 456799999986
No 69
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=40.93 E-value=1e+02 Score=26.30 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=45.7
Q ss_pred CceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecCC---Cceee
Q 025868 130 PNIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGSR---NKLLA 206 (247)
Q Consensus 130 e~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~~---~~~~~ 206 (247)
|..-+++|.+|+--.+|.|..... .+ +.++-|+ -|....|-... .+...
T Consensus 106 ea~Lvn~Y~pGd~ig~HqD~~e~~----~~--~~v~slS----------------------Lg~~~~F~~~~~~r~~~~~ 157 (194)
T COG3145 106 EAVLVNRYRPGASIGWHQDKDEED----DR--PPVASLS----------------------LGAPCIFRLRGRRRRGPGL 157 (194)
T ss_pred hheeEEeccCCCcccccccccccc----CC--CceEEEe----------------------cCCCeEEEeccccCCCCce
Confidence 446688999999999999996432 12 3344444 22233343211 23457
Q ss_pred EEecCCCcEEEEecCCCCCcccccc
Q 025868 207 EVAPIEGMALIHIHGDKCMLHEARN 231 (247)
Q Consensus 207 ~V~P~~G~aviF~~~d~~~lH~g~P 231 (247)
++.-..|++|++-......+|...|
T Consensus 158 ~~~L~~Gdvvvm~G~~r~~~~h~~p 182 (194)
T COG3145 158 RLRLEHGDVVVMGGPSRLAWHHIIP 182 (194)
T ss_pred eEEecCCCEEEecCCcccccccccc
Confidence 7888899999997543445664443
No 70
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=40.90 E-value=33 Score=31.80 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=30.1
Q ss_pred eeEEecCCCcEEEEecCCCCCcccccccccccEEEEEEee
Q 025868 205 LAEVAPIEGMALIHIHGDKCMLHEARNVIKGVKYIFRSDV 244 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~Kyiirtdv 244 (247)
.+.++-++|++|||.|. +++|+-.... |.|+.....|
T Consensus 312 ~~~~~l~pGd~vi~DN~--rvLHgRtaf~-g~R~L~G~Y~ 348 (362)
T TIGR02410 312 EIEFKLRPGTVLIFDNW--RVLHSRTSFT-GYRRMCGCYL 348 (362)
T ss_pred EEEEEcCCccEEEEeeE--EEeecCCCcC-CceEEEEEEE
Confidence 46778889999999874 7999999886 8888876654
No 71
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=37.44 E-value=34 Score=31.67 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=25.1
Q ss_pred cccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEec
Q 025868 142 RFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYG 199 (247)
Q Consensus 142 ~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~ 199 (247)
...+|+|..+.... -.+++|..+. ...+||+|.|-+
T Consensus 186 ~l~~HtD~~y~~~p---P~~~~L~c~~-------------------~~~~GG~T~~~d 221 (366)
T TIGR02409 186 GLPFHTDNPYRDHP---PGLQLLHCLE-------------------STVEGGDSLFVD 221 (366)
T ss_pred cccccccCCccCCC---Cceeeeeecc-------------------cCCCCcceeeee
Confidence 45699999875422 1256777777 457899999875
No 72
>PRK02963 carbon starvation induced protein; Validated
Probab=37.26 E-value=39 Score=31.13 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=27.7
Q ss_pred eEEecCCCcEEEEecCCCCCcccccccc---cccEEEEEE
Q 025868 206 AEVAPIEGMALIHIHGDKCMLHEARNVI---KGVKYIFRS 242 (247)
Q Consensus 206 ~~V~P~~G~aviF~~~d~~~lH~g~PV~---~G~Kyiirt 242 (247)
+.++-++|++|+|.| .+++|+-..-. .|.|+.||-
T Consensus 267 ~~fkL~pGd~vvfDN--~RVLHGR~aF~~~~g~~R~L~r~ 304 (316)
T PRK02963 267 LSVPVPVGKFLLINN--LFWLHGRDRFTPHPDLRRELMRQ 304 (316)
T ss_pred EEEecCCceEEEEeC--eEEeeCCCCcCCCCCCceEEEec
Confidence 466788999999987 48999998886 356888663
No 73
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=35.39 E-value=36 Score=28.95 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=25.8
Q ss_pred CcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecC
Q 025868 141 QRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGS 200 (247)
Q Consensus 141 ~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~ 200 (247)
+...+|+|..+... .-.+.+|+.+. .+.+||+|.|...
T Consensus 95 ~~l~~HtD~~~~~~---~p~~~~L~c~~-------------------~~~~GG~T~~~d~ 132 (258)
T PF02668_consen 95 GELPWHTDGSYWPY---PPDYLALYCLR-------------------PAEEGGETTFADA 132 (258)
T ss_dssp SGEEEE-TTTTSTT---EESEEEEEEEE-------------------EESSSSEEEEEEH
T ss_pred cccccccccCcccC---CcceeEEEeec-------------------cCCCCCccccccH
Confidence 35789999986532 22366777777 4569999999764
No 74
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=33.66 E-value=64 Score=28.59 Aligned_cols=39 Identities=10% Similarity=-0.046 Sum_probs=29.1
Q ss_pred eeeEEecCCCcEEEEecCCCCCccccccccc-ccEEEEEEee
Q 025868 204 LLAEVAPIEGMALIHIHGDKCMLHEARNVIK-GVKYIFRSDV 244 (247)
Q Consensus 204 ~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~-G~Kyiirtdv 244 (247)
..++.+=++|++|+|.|. +++|.+..-.. ..|..-|+-|
T Consensus 232 ~~~~~~w~~GD~viwDNr--~~~H~a~~~~~~~~R~~~R~~v 271 (277)
T PRK09553 232 FQVRWRWQPNDVAIWDNR--VTQHYANADYLPQRRIMHRATI 271 (277)
T ss_pred eEEEEecCCCCEEEEcCc--ceeEecccCCCCCceEEEEEee
Confidence 345677889999999874 79999976554 3577777655
No 75
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=32.81 E-value=36 Score=30.93 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.3
Q ss_pred eeeEEecCCCcEEEEecCCCCCccccccccccc-----EEEEEEeee
Q 025868 204 LLAEVAPIEGMALIHIHGDKCMLHEARNVIKGV-----KYIFRSDVV 245 (247)
Q Consensus 204 ~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~-----Kyiirtdv~ 245 (247)
....|+.++|++|+|.+ ++.||+-.-.+ |- .|+-|+|+|
T Consensus 318 n~~~ikL~PGsvifiDN--wRvLHgRe~ft-GyRqmcGcYl~Rddfl 361 (371)
T KOG3889|consen 318 NSIEIKLRPGSVIFIDN--WRVLHGRESFT-GYRQMCGCYLSRDDFL 361 (371)
T ss_pred ceEEEEecCceEEEEec--eeEecCccccc-chhhhcceeeehhhhh
Confidence 45678888899999977 47899766655 32 588888876
No 76
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=32.30 E-value=61 Score=30.01 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=29.8
Q ss_pred eeEEecCCCcEEEEecCCCCCcccccccc--cccEEEEEEee
Q 025868 205 LAEVAPIEGMALIHIHGDKCMLHEARNVI--KGVKYIFRSDV 244 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~d~~~lH~g~PV~--~G~Kyiirtdv 244 (247)
.+..+-++|++|||.|- +++|+..... .|.|+.....|
T Consensus 313 ~~~~~l~pGd~vi~DN~--rvlH~R~af~~~~~~R~L~g~Y~ 352 (366)
T TIGR02409 313 KFTFKLEPGDLVLFDNT--RLLHARDAFSNPEGKRHLQGCYA 352 (366)
T ss_pred EEEEEcCCCcEEEEece--EEeecCCCcCCCCCceEEEEEEE
Confidence 45678889999999874 7999999886 57788766543
No 77
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=31.39 E-value=99 Score=24.04 Aligned_cols=45 Identities=7% Similarity=-0.034 Sum_probs=29.2
Q ss_pred CCCcCcceEEecCCCceeeEEecCCCcEEEEecCCCCCcccccccccc
Q 025868 188 EPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKG 235 (247)
Q Consensus 188 d~~eGGeT~F~~~~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G 235 (247)
+..++|........+...+-++...|.+-.|.+. -.|++.++..|
T Consensus 9 elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~---C~Hrg~~L~~g 53 (123)
T cd03542 9 QIPNNNDYFTTTIGRQPVVITRDKDGELNAFINA---CSHRGAMLCRR 53 (123)
T ss_pred HCCCCCCEEEEEECCcEEEEEECCCCCEEEEccc---CcCCCCccccc
Confidence 4455565444322223334456678999999876 69999999865
No 78
>PLN00139 hypothetical protein; Provisional
Probab=27.79 E-value=74 Score=29.16 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=26.0
Q ss_pred CCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecC
Q 025868 140 GQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGS 200 (247)
Q Consensus 140 G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~ 200 (247)
.+...+|.|..+..... ..+++..+. -+.+||+|.|-+.
T Consensus 110 ~~~i~~H~E~sy~~~pP---~~~~f~C~~-------------------~p~~GGeT~~aD~ 148 (320)
T PLN00139 110 SEFIYYHHEMVLIKESP---KKVILFCEI-------------------PPPEGGQTPFVPS 148 (320)
T ss_pred cccccccccccCccCCC---ceEEEEecc-------------------cCCCCCCCeeecH
Confidence 34567999999864322 245555555 4568999999753
No 79
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.82 E-value=71 Score=24.53 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=28.6
Q ss_pred cceeeeecCCCEEEEcCCCCHHHHHHHHHHHHh
Q 025868 40 DLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEA 72 (247)
Q Consensus 40 ~l~v~~~~~~~i~vi~~fLs~~EC~~Li~~~e~ 72 (247)
.+.++.+++..|++++.=|||+|-..||+..-.
T Consensus 11 r~ILd~Vk~G~IvVLE~GLtPeEe~~LIE~TM~ 43 (104)
T PF09846_consen 11 RLILDKVKDGNIVVLEEGLTPEEESKLIEMTMT 43 (104)
T ss_pred HHHHhhcccCcEEEEcCCCChHHHHHHHHHHHH
Confidence 466778888999999999999999999988744
No 80
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=25.41 E-value=2.3e+02 Score=20.26 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=22.7
Q ss_pred eeEEecCCCcEEEEecCCCCCccccccccccc
Q 025868 205 LAEVAPIEGMALIHIHGDKCMLHEARNVIKGV 236 (247)
Q Consensus 205 ~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~ 236 (247)
.+.+.-..|....|.+. -.|.++|+..|.
T Consensus 26 ~v~~~~~~g~~~A~~~~---CpH~g~~l~~~~ 54 (97)
T PF00355_consen 26 LVLVRRSDGEIYAFSNR---CPHQGCPLSEGP 54 (97)
T ss_dssp EEEEEETTTEEEEEESB----TTTSBBGGCSS
T ss_pred EEEEEeCCCCEEEEEcc---CCccceeEccee
Confidence 45566778999999875 799999999884
No 81
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=24.07 E-value=86 Score=29.05 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=25.8
Q ss_pred ccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecC
Q 025868 143 FGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGS 200 (247)
Q Consensus 143 f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~ 200 (247)
..+|+|..+.... -.+.+|..|. .+.+||+|.|-+.
T Consensus 179 l~~HtD~~y~~~p---p~~~~L~c~~-------------------~~~~GG~t~~~d~ 214 (362)
T TIGR02410 179 IDMHTDGTYWDET---PGLQLFHCLT-------------------HDGTGGETVLVDG 214 (362)
T ss_pred ccccccCCCCCCC---CcceeEeeee-------------------cCCCCCceeeeeH
Confidence 4589999875422 2367777777 4579999999863
No 82
>PHA02577 2 DNA end protector protein; Provisional
Probab=24.05 E-value=72 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=32.9
Q ss_pred ceEEEecCCCCcccccccCCccCCCCceeEEEEEEEecCccccccccccCCCCCCCCCCCcCcceEEecC
Q 025868 131 NIRFYRYKVGQRFGQHIDESVNLGDGKRTHYTLLIYLSGGLKAKAKNDLSIHNDSSPEPLVGGETVFYGS 200 (247)
Q Consensus 131 ~~q~~rY~~G~~f~~H~D~~~~~~~~~~r~~T~llYLN~~~~~~~~~~~~~~~~~~~d~~eGGeT~F~~~ 200 (247)
..|++|+.+|--|.--+|.-..+.-.--..+-+++||+ ..-..|.|.|+..
T Consensus 34 ~h~v~kp~~Grly~F~YdAk~KdtLpywDrfPLI~flg-------------------~~~~~g~~l~~GL 84 (181)
T PHA02577 34 GHQVVKPQPGRLYTFEYDAKHKDTLPYWDRFPLIIFLG-------------------SGQSKAHTLMYGL 84 (181)
T ss_pred ccccccCcCceEEEEEecccccCcccccccCcEEEEEe-------------------cCCCCCcceEeee
Confidence 36788999998776666655432111112489999999 3344488888753
No 83
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.14 E-value=80 Score=24.52 Aligned_cols=33 Identities=9% Similarity=0.309 Sum_probs=28.2
Q ss_pred cceeeeecCCCEEEEcCCCCHHHHHHHHHHHHh
Q 025868 40 DLRVSRLKDTDLFTVQNFFTSAESKGFVKAAEA 72 (247)
Q Consensus 40 ~l~v~~~~~~~i~vi~~fLs~~EC~~Li~~~e~ 72 (247)
.+.++.+.+..|+++++=|+|+|-..||+..-.
T Consensus 24 r~Iid~vr~G~IlVLE~gL~P~eeaklIe~TM~ 56 (118)
T COG3365 24 RYIIDKVREGDILVLEGGLTPEEEAKLIEMTMS 56 (118)
T ss_pred HHHHHhccCCcEEEEeCCCChHHHHHHHHHHHH
Confidence 466777788999999999999999999987643
No 84
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=23.04 E-value=1.6e+02 Score=22.69 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=28.5
Q ss_pred CCCcCcceEEecCCCceeeEEecCCCcEEEEecCCCCCcccccccccc
Q 025868 188 EPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKG 235 (247)
Q Consensus 188 d~~eGGeT~F~~~~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G 235 (247)
+..++|...+....+...+-++-..|.+-.|.+. -.|.+.|+..|
T Consensus 11 el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~---CpHrg~~L~~g 55 (123)
T cd03535 11 EIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNS---CRHRGMQVCRA 55 (123)
T ss_pred HCCCCCCEEEEEECCeEEEEEECCCCCEEEEccc---CccCCCEeecc
Confidence 4456665555432222233445567888888775 79999999876
No 85
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=23.01 E-value=1.4e+02 Score=23.25 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=28.2
Q ss_pred CCCcCcceEEecCCCceeeEEecCCCcEEEEecCCCCCccccccccccc
Q 025868 188 EPLVGGETVFYGSRNKLLAEVAPIEGMALIHIHGDKCMLHEARNVIKGV 236 (247)
Q Consensus 188 d~~eGGeT~F~~~~~~~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G~ 236 (247)
+..++|........+...+-++...|.+-.|.+. ..|.+.++..|.
T Consensus 17 el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~---C~Hrg~~L~~g~ 62 (128)
T cd03472 17 HIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQ---CRHRGMRICRSD 62 (128)
T ss_pred HCCCCCCEEEEEECCceEEEEECCCCCEEEEhhh---CcCCCCeeeccC
Confidence 4445555332222222234456678898888775 699999998763
No 86
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=22.20 E-value=2.3e+02 Score=20.36 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=14.5
Q ss_pred CceEEEecCCCCcccccc
Q 025868 130 PNIRFYRYKVGQRFGQHI 147 (247)
Q Consensus 130 e~~q~~rY~~G~~f~~H~ 147 (247)
+...++|+.+|..+..|.
T Consensus 24 ~~~~L~r~~pG~~~p~H~ 41 (91)
T PF12973_consen 24 ERVSLLRLEPGASLPRHR 41 (91)
T ss_dssp EEEEEEEE-TTEEEEEEE
T ss_pred CEEEEEEECCCCCcCccC
Confidence 468899999999999885
No 87
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa
Probab=21.82 E-value=2e+02 Score=20.07 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=18.9
Q ss_pred CcCcceEEecCCCceeeEE---ecCCCcEEEEecC
Q 025868 190 LVGGETVFYGSRNKLLAEV---APIEGMALIHIHG 221 (247)
Q Consensus 190 ~eGGeT~F~~~~~~~~~~V---~P~~G~aviF~~~ 221 (247)
+.-|++.|... ... .++.|++|+|.+.
T Consensus 14 i~~gd~v~v~~-----~~~~~~~~~~GDiv~~~~~ 43 (85)
T cd06530 14 LQPGDLVLVNK-----LSYGFREPKRGDVVVFKSP 43 (85)
T ss_pred ccCCCEEEEEE-----eecccCCCCCCCEEEEeCC
Confidence 56678888642 222 4789999999875
No 88
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=21.26 E-value=1.9e+02 Score=22.69 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=17.5
Q ss_pred EEecCCCcEEEEecCCCCCccccccccccc
Q 025868 207 EVAPIEGMALIHIHGDKCMLHEARNVIKGV 236 (247)
Q Consensus 207 ~V~P~~G~aviF~~~d~~~lH~g~PV~~G~ 236 (247)
.|.-++|++++|+.+ +=....|.+..
T Consensus 83 ~v~~~aGD~~~~~~G----~~g~W~V~Etv 108 (116)
T COG3450 83 PVEVRAGDSFVFPAG----FKGTWEVLETV 108 (116)
T ss_pred EEEEcCCCEEEECCC----CeEEEEEeeee
Confidence 445567999999987 34455565554
No 89
>COG2175 TauD Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.85 E-value=1.9e+02 Score=26.17 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=24.9
Q ss_pred eeeEEecCCCcEEEEecCCCCCcccccccccc-cEEEEE
Q 025868 204 LLAEVAPIEGMALIHIHGDKCMLHEARNVIKG-VKYIFR 241 (247)
Q Consensus 204 ~~~~V~P~~G~aviF~~~d~~~lH~g~PV~~G-~Kyiir 241 (247)
..++.+=+.|++|||.|. .++|+..--..- .|++=|
T Consensus 237 ~~~r~~wq~gDivIwDNr--~~lH~a~~~~~~~~R~l~R 273 (286)
T COG2175 237 NQYRHRWQPGDIVIWDNR--ATLHAATAFYADQRRILHR 273 (286)
T ss_pred hEEEEecCCCCEEEEeCc--ceeeccccCCccceEEEEE
Confidence 456777889999999885 588887665543 344433
No 90
>PF06253 MTTB: Trimethylamine methyltransferase (MTTB); InterPro: IPR010426 This family consists of several trimethylamine methyltransferase (MTTB) proteins from numerous Rhizobium and Methanosarcina species.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis; PDB: 2QNE_A.
Probab=20.40 E-value=66 Score=31.52 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=11.1
Q ss_pred CCCCHHHHHHHHHHHHh
Q 025868 56 NFFTSAESKGFVKAAEA 72 (247)
Q Consensus 56 ~fLs~~EC~~Li~~~e~ 72 (247)
++||+++|+.|-+.+-.
T Consensus 34 ~~ls~~~ie~IHe~sl~ 50 (505)
T PF06253_consen 34 NFLSEEEIEQIHEASLR 50 (505)
T ss_dssp --S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 58899999998766644
No 91
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=20.10 E-value=48 Score=24.31 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.4
Q ss_pred EEcCCCCHHHHHHHHH
Q 025868 53 TVQNFFTSAESKGFVK 68 (247)
Q Consensus 53 vi~~fLs~~EC~~Li~ 68 (247)
.-.+|||.+||+.|..
T Consensus 24 l~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 24 LTRGFFSSYDCDEIRL 39 (81)
T ss_pred HHcCCccHhhcchhhc
Confidence 4578999999999875
Done!