BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025869
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MIL|A Chain A, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
pdb|3MIL|B Chain B, Crystal Structure Of Isoamyl Acetate-Hydrolyzing Esterase
From Saccharomyces Cerevisiae
Length = 240
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 28/206 (13%)
Query: 4 QIVLFGDSITQQSFGSA---------GWGAALADAYCRKADVLLRGYGGYNTRWALFLLH 54
+ +LFGDSIT+ +F + GAAL + Y RK D+L RG+ GY +RWAL +L
Sbjct: 5 KFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILP 64
Query: 55 HIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLK--RLSPIM 112
I L + + V TIF GANDA ++ Q VP+ E+ DN++ MV +K + PI
Sbjct: 65 EI--LKHESNIVMATIFLGANDAC----SAGPQSVPLPEFIDNIRQMVSLMKSYHIRPI- 117
Query: 113 LVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLW 172
+I P VD R ++ K E A+ RTNE +Y+ + A + VPF+ L
Sbjct: 118 ---IIGPGLVD---REKWEKEKSEEIALGY-FRTNENFAIYSDALAKLANEEKVPFVALN 170
Query: 173 SKMQETEG--WQKKFLSDGLHLTEEG 196
Q+ G WQ + L+DGLH + +G
Sbjct: 171 KAFQQEGGDAWQ-QLLTDGLHFSGKG 195
>pdb|1YZF|A Chain A, Crystal Structure Of The LipaseACYLHYDROLASE FROM
ENTEROCOCCUS Faecalis
Length = 195
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 45/205 (21%)
Query: 4 QIVLFGDSITQQSFGSAGWGAALADAYCR--------KADVLLRGYGGYNTRWALFLLHH 55
+IVLFGDSIT A L D R + V+ G G T L L+
Sbjct: 3 KIVLFGDSITAGYLDEA-VSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNK 61
Query: 56 IFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVV 115
++ P IFFGANDA+L +++ V + +NL+ M+ + V+
Sbjct: 62 EVLIEK---PDEVVIFFGANDASL------DRNITVATFRENLETMIHEIGSEK----VI 108
Query: 116 LITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG----VPFIDL 171
LITPP D R PER ++ ++ A+++G +P IDL
Sbjct: 109 LITPPYADSGRR---------------PERPQ----TRIKELVKVAQEVGAAHNLPVIDL 149
Query: 172 WSKMQETEGWQKKFLSDGLHLTEEG 196
+ M G + +DGLH ++ G
Sbjct: 150 YKAMTVYPGTDEFLQADGLHFSQVG 174
>pdb|2HSJ|A Chain A, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|B Chain B, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|C Chain C, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia.
pdb|2HSJ|D Chain D, The Structure Of A Putative Platelet Activating Factor
From Streptococcus Pneumonia
Length = 214
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 49/207 (23%)
Query: 1 MRPQIVLFGDSIT-----QQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHH 55
+ P I+ GDSI Q+ FG++ ++ RG GY T L
Sbjct: 33 VEPNILFIGDSIVEYYPLQELFGTS-------------KTIVNRGIRGYQTGLLL----- 74
Query: 56 IFPLDNSNPPVATTIFFGANDAA--LFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113
+ ++ GA D L G + VPV E +NL+ ++Q + R P+
Sbjct: 75 --------ENLDAHLYGGAVDKIFLLIGTNDIGKDVPVNEALNNLEAIIQSVARDYPLTE 126
Query: 114 VVLITPPPVDEDGRMEYAKSLY---GEKAMKLPERTNEMTGVYARQCIETAKDLGVPFID 170
+ L++ PV+E R EY +++Y EK + E+ Y + V F+
Sbjct: 127 IKLLSILPVNE--REEYQQAVYIRSNEKIQNWNQAYQELASAYXQ----------VEFVP 174
Query: 171 LWSKMQETEG-WQKKFLSDGLHLTEEG 196
++ + + G +K++ +DGLHL+ G
Sbjct: 175 VFDCLTDQAGQLKKEYTTDGLHLSIAG 201
>pdb|1Z8H|A Chain A, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|B Chain B, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|C Chain C, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
pdb|1Z8H|D Chain D, Crystal Structure Of A Gdsl-Like Lipase (Alr1529) From
Nostoc Sp. Pcc 7120 At 2.02 A Resolution
Length = 218
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 29/124 (23%)
Query: 72 FGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED---GRM 128
FG ND L + + V + E N + ++ K+L P++ I+P P E GR
Sbjct: 96 FGLNDTTL---ENGKPRVSIAETIKNTREILTQAKKLYPVLX---ISPAPYIEQQDPGRR 149
Query: 129 EYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGW-QKKFLS 187
RT +++ A C +DL VP++D++ +++ W + +
Sbjct: 150 R---------------RTIDLSQQLALVC----QDLDVPYLDVFPLLEKPSVWLHEAKAN 190
Query: 188 DGLH 191
DG+H
Sbjct: 191 DGVH 194
>pdb|3BZW|A Chain A, Crystal Structure Of A Putative Lipase From Bacteroides
Thetaiotaomicron
pdb|3BZW|B Chain B, Crystal Structure Of A Putative Lipase From Bacteroides
Thetaiotaomicron
pdb|3BZW|C Chain C, Crystal Structure Of A Putative Lipase From Bacteroides
Thetaiotaomicron
pdb|3BZW|D Chain D, Crystal Structure Of A Putative Lipase From Bacteroides
Thetaiotaomicron
pdb|3BZW|E Chain E, Crystal Structure Of A Putative Lipase From Bacteroides
Thetaiotaomicron
pdb|3BZW|F Chain F, Crystal Structure Of A Putative Lipase From Bacteroides
Thetaiotaomicron
Length = 274
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTG 151
+ Y + I + LK+L P +VL+TP + + + +G+K ++ E G
Sbjct: 141 DTYRGRINIGITQLKKLFPDKQIVLLTP--------LHRSLANFGDKNVQPDESYQNGCG 192
Query: 152 VYARQCIETAKD----LGVPFIDL 171
Y ++ K+ G+P ID
Sbjct: 193 EYIDAYVQAIKEAGNIWGIPVIDF 216
>pdb|1VJG|A Chain A, Crystal Structure Of A Gdsl-like Lipase (alr1529) From
Nostoc Sp. Pcc 7120 At 2.01 A Resolution
Length = 218
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 29/124 (23%)
Query: 72 FGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED---GRM 128
FG ND L + + V + E N + ++ K+L P++ I+P P E GR
Sbjct: 96 FGLNDTTL---ENGKPRVSIAETIKNTREILTQAKKLYPVLX---ISPAPYIEQQDPGRR 149
Query: 129 EYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGW-QKKFLS 187
RT +++ A C +DL VP++D++ +++ W + +
Sbjct: 150 R---------------RTIDLSQQLALVC----QDLDVPYLDVFPLLEKPSVWLHEAKAN 190
Query: 188 DGLH 191
DG+H
Sbjct: 191 DGVH 194
>pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant)
Bound To A Dsdna, In Edition Mode
Length = 793
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 153 YARQCIETAKDLGVPFIDLWSKMQETEGWQKKFL-SDGLHLTEEG 196
Y ++C E+ G +IDL + E+ G++ ++ +DGL+ T G
Sbjct: 528 YCKECAESVTAWGRQYIDLVRRELESRGFKVLYIDTDGLYATIPG 572
>pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLU|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLV|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLW|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLX|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLY|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLZ|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM0|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM1|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
Length = 793
Score = 28.1 bits (61), Expect = 4.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 153 YARQCIETAKDLGVPFIDLWSKMQETEGWQKKFL-SDGLHLTEEG 196
Y ++C E+ G +IDL + E+ G++ ++ +DGL+ T G
Sbjct: 528 YCKECAESVTAWGRQYIDLVRRELESRGFKVLYIDTDGLYATIPG 572
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 144 ERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLS 187
N VY + I+ DLG+ I + + GWQK F++
Sbjct: 201 NHNNSTVDVYLKDAIKMWLDLGIDGIRMAAVKHMPFGWQKSFMA 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,629,601
Number of Sequences: 62578
Number of extensions: 298348
Number of successful extensions: 717
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)