Query 025869
Match_columns 247
No_of_seqs 139 out of 1398
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3035 Isoamyl acetate-hydrol 100.0 8.6E-44 1.9E-48 262.7 18.5 233 1-237 5-240 (245)
2 cd01838 Isoamyl_acetate_hydrol 100.0 9.4E-33 2E-37 213.5 20.0 197 4-208 1-199 (199)
3 cd01836 FeeA_FeeB_like SGNH_hy 100.0 7.4E-31 1.6E-35 201.8 17.6 179 3-209 3-190 (191)
4 cd01839 SGNH_arylesterase_like 100.0 7.6E-31 1.7E-35 204.3 17.7 181 4-210 1-207 (208)
5 cd01821 Rhamnogalacturan_acety 100.0 1.2E-30 2.6E-35 201.7 18.0 183 3-208 1-198 (198)
6 cd01841 NnaC_like NnaC (CMP-Ne 100.0 1.8E-30 4E-35 196.7 16.2 172 3-208 1-174 (174)
7 cd01827 sialate_O-acetylestera 100.0 4.7E-30 1E-34 196.8 17.4 176 4-208 2-187 (188)
8 cd04501 SGNH_hydrolase_like_4 100.0 2.1E-29 4.5E-34 192.4 18.3 177 4-208 2-183 (183)
9 PRK10528 multifunctional acyl- 100.0 1.3E-28 2.8E-33 188.9 18.2 172 3-211 11-186 (191)
10 cd01835 SGNH_hydrolase_like_3 100.0 1.6E-28 3.4E-33 189.1 17.8 182 3-206 2-191 (193)
11 cd01825 SGNH_hydrolase_peri1 S 100.0 3.1E-29 6.8E-34 192.3 13.7 182 4-211 1-188 (189)
12 cd01828 sialate_O-acetylestera 100.0 2.6E-28 5.7E-33 184.0 17.6 166 5-208 2-168 (169)
13 cd04502 SGNH_hydrolase_like_7 100.0 2.2E-28 4.7E-33 184.8 16.8 168 4-208 1-171 (171)
14 cd01832 SGNH_hydrolase_like_1 100.0 2.3E-28 4.9E-33 187.0 16.9 172 4-206 1-184 (185)
15 cd01820 PAF_acetylesterase_lik 100.0 4.9E-28 1.1E-32 189.2 17.5 179 3-211 33-213 (214)
16 cd01822 Lysophospholipase_L1_l 100.0 1.1E-27 2.3E-32 181.9 18.1 168 4-208 2-176 (177)
17 cd01834 SGNH_hydrolase_like_2 100.0 4.5E-28 9.7E-33 186.1 15.8 182 3-206 2-190 (191)
18 cd01844 SGNH_hydrolase_like_6 100.0 1.5E-27 3.3E-32 181.1 15.7 171 4-208 1-177 (177)
19 cd04506 SGNH_hydrolase_YpmR_li 100.0 1.3E-27 2.9E-32 185.5 14.6 187 4-206 1-203 (204)
20 cd01830 XynE_like SGNH_hydrola 99.9 7.9E-27 1.7E-31 181.1 16.1 181 4-205 1-201 (204)
21 cd01833 XynB_like SGNH_hydrola 99.9 1.4E-26 3E-31 172.5 14.0 151 4-208 2-157 (157)
22 cd01829 SGNH_hydrolase_peri2 S 99.9 1.2E-24 2.7E-29 168.4 17.0 176 4-209 1-199 (200)
23 cd01831 Endoglucanase_E_like E 99.9 8.2E-24 1.8E-28 159.4 15.1 150 4-209 1-169 (169)
24 cd01823 SEST_like SEST_like. A 99.9 5.5E-24 1.2E-28 171.2 13.5 202 4-206 2-258 (259)
25 PF13472 Lipase_GDSL_2: GDSL-l 99.9 4.2E-24 9.1E-29 161.6 12.1 175 6-200 1-179 (179)
26 cd01840 SGNH_hydrolase_yrhL_li 99.9 1.4E-23 3.1E-28 154.9 13.8 149 4-208 1-150 (150)
27 PF14606 Lipase_GDSL_3: GDSL-l 99.9 2.6E-22 5.7E-27 148.4 10.1 173 2-209 1-178 (178)
28 cd00229 SGNH_hydrolase SGNH_hy 99.9 1.2E-20 2.5E-25 142.8 14.9 176 5-206 1-186 (187)
29 PF00657 Lipase_GDSL: GDSL-lik 99.9 1.2E-21 2.6E-26 154.7 9.4 195 5-204 1-234 (234)
30 cd01824 Phospholipase_B_like P 99.8 6.7E-20 1.5E-24 148.3 16.0 175 34-211 82-286 (288)
31 COG2755 TesA Lysophospholipase 99.8 1.7E-19 3.6E-24 141.3 16.1 185 4-212 10-212 (216)
32 cd01826 acyloxyacyl_hydrolase_ 99.8 8.6E-19 1.9E-23 139.3 15.0 171 35-206 93-304 (305)
33 cd01846 fatty_acyltransferase_ 99.8 2.2E-18 4.7E-23 139.5 16.1 195 4-206 1-269 (270)
34 COG2845 Uncharacterized protei 99.7 7E-17 1.5E-21 127.2 12.7 180 3-211 117-320 (354)
35 cd01842 SGNH_hydrolase_like_5 99.7 2.9E-15 6.3E-20 109.5 16.1 134 62-208 48-182 (183)
36 cd01847 Triacylglycerol_lipase 99.6 9.5E-15 2.1E-19 118.8 13.3 198 3-208 2-281 (281)
37 cd01837 SGNH_plant_lipase_like 99.6 5E-15 1.1E-19 122.4 10.9 200 3-206 1-313 (315)
38 PRK15381 pathogenicity island 99.6 5.4E-14 1.2E-18 118.1 12.8 189 3-211 143-404 (408)
39 PLN03156 GDSL esterase/lipase; 99.5 2.1E-12 4.5E-17 107.7 15.6 142 65-210 158-348 (351)
40 KOG3670 Phospholipase [Lipid t 99.5 1.4E-12 3E-17 106.3 13.9 173 37-211 150-353 (397)
41 PF04311 DUF459: Protein of un 98.9 1.5E-08 3.2E-13 82.6 8.8 179 4-211 39-240 (327)
42 PF13839 PC-Esterase: GDSL/SGN 98.8 8.1E-08 1.8E-12 77.3 13.0 142 64-208 100-261 (263)
43 PF07611 DUF1574: Protein of u 98.4 8.9E-06 1.9E-10 67.0 12.8 178 2-208 63-343 (345)
44 COG3240 Phospholipase/lecithin 98.2 1.2E-05 2.6E-10 66.0 9.3 132 68-211 165-336 (370)
45 PF04914 DltD_C: DltD C-termin 98.1 2.8E-05 6E-10 55.2 8.2 99 90-210 31-129 (130)
46 PF08885 GSCFA: GSCFA family; 98.0 7.4E-05 1.6E-09 59.3 9.4 127 64-202 101-249 (251)
47 PF03629 DUF303: Domain of unk 96.3 0.086 1.9E-06 42.3 11.1 148 21-210 73-254 (255)
48 TIGR02171 Fb_sc_TIGR02171 Fibr 95.4 0.35 7.5E-06 45.1 12.2 103 95-210 807-910 (912)
49 PF14286 DHHW: DHHW protein 94.7 0.21 4.6E-06 42.4 8.3 100 96-208 154-253 (378)
50 COG3966 DltD Protein involved 88.1 3.7 8.1E-05 34.3 7.9 94 97-211 296-390 (415)
51 PRK15180 Vi polysaccharide bio 86.4 4.9 0.00011 35.2 8.0 61 150-211 210-274 (831)
52 KOG0087 GTPase Rab11/YPT3, sma 85.8 9 0.00019 29.7 8.4 28 92-119 99-127 (222)
53 KOG1388 Attractin and platelet 85.6 0.079 1.7E-06 40.5 -2.6 148 35-211 52-201 (217)
54 KOG0094 GTPase Rab6/YPT6/Ryh1, 84.1 15 0.00032 28.3 8.7 54 50-119 81-136 (221)
55 PF05141 DIT1_PvcA: Pyoverdine 82.1 9.5 0.00021 31.1 7.7 69 90-174 37-109 (278)
56 KOG0084 GTPase Rab1/YPT1, smal 82.0 10 0.00023 29.0 7.3 99 4-119 11-122 (205)
57 cd02067 B12-binding B12 bindin 79.7 14 0.0003 25.5 7.1 73 25-122 18-92 (119)
58 PF05872 DUF853: Bacterial pro 77.0 40 0.00087 29.6 10.1 52 61-123 251-302 (502)
59 cd04121 Rab40 Rab40 subfamily. 73.8 37 0.0008 25.7 9.8 41 64-119 78-118 (189)
60 COG2240 PdxK Pyridoxal/pyridox 72.9 43 0.00092 27.3 8.8 99 3-119 1-111 (281)
61 PF07745 Glyco_hydro_53: Glyco 71.4 61 0.0013 27.2 12.9 147 62-211 123-283 (332)
62 PRK03670 competence damage-ind 70.2 16 0.00035 29.3 6.0 69 1-74 1-70 (252)
63 PF13380 CoA_binding_2: CoA bi 69.1 3.7 8.1E-05 28.5 1.9 86 3-119 1-87 (116)
64 KOG2683 Sirtuin 4 and related 66.7 21 0.00045 28.2 5.6 64 1-75 221-284 (305)
65 PF03618 Kinase-PPPase: Kinase 65.8 27 0.00058 28.1 6.3 52 95-178 39-90 (255)
66 PF06309 Torsin: Torsin; Inte 64.6 35 0.00075 24.2 6.0 69 37-115 57-126 (127)
67 PF12683 DUF3798: Protein of u 62.8 82 0.0018 25.6 9.8 108 34-174 65-172 (275)
68 PF14587 Glyco_hydr_30_2: O-Gl 62.7 47 0.001 28.4 7.4 114 97-216 105-221 (384)
69 cd02070 corrinoid_protein_B12- 62.2 48 0.001 25.4 7.1 64 32-120 109-174 (201)
70 PF00994 MoCF_biosynth: Probab 61.2 12 0.00026 26.9 3.4 64 5-74 2-66 (144)
71 PF10087 DUF2325: Uncharacteri 60.7 46 0.001 22.0 7.9 80 4-118 1-82 (97)
72 PF00056 Ldh_1_N: lactate/mala 60.6 18 0.00038 26.1 4.2 51 62-120 67-120 (141)
73 cd00885 cinA Competence-damage 59.1 30 0.00064 25.9 5.3 65 4-74 3-68 (170)
74 COG1058 CinA Predicted nucleot 57.4 43 0.00093 26.9 6.1 67 2-74 3-70 (255)
75 PTZ00344 pyridoxal kinase; Pro 57.2 1.1E+02 0.0023 25.1 10.4 18 1-19 3-20 (296)
76 PF00071 Ras: Ras family; Int 57.1 69 0.0015 22.9 7.6 41 64-119 71-112 (162)
77 PF06935 DUF1284: Protein of u 56.5 23 0.00051 24.0 4.0 29 92-121 4-32 (103)
78 PRK00955 hypothetical protein; 56.0 73 0.0016 29.3 7.9 102 4-120 16-132 (620)
79 PF00072 Response_reg: Respons 55.8 56 0.0012 21.5 8.1 37 64-119 43-79 (112)
80 COG0796 MurI Glutamate racemas 55.0 1.1E+02 0.0025 24.8 8.9 69 33-119 7-75 (269)
81 TIGR00067 glut_race glutamate 55.0 1.1E+02 0.0024 24.5 9.5 68 35-120 2-70 (251)
82 PRK08154 anaerobic benzoate ca 54.9 50 0.0011 27.3 6.5 33 94-126 116-148 (309)
83 PF02310 B12-binding: B12 bind 54.9 42 0.00091 22.9 5.3 72 24-120 18-90 (121)
84 PRK05086 malate dehydrogenase; 54.2 46 0.001 27.6 6.1 50 63-120 68-120 (312)
85 PF03808 Glyco_tran_WecB: Glyc 52.9 40 0.00086 25.2 5.1 62 3-74 49-111 (172)
86 PLN00135 malate dehydrogenase 52.1 55 0.0012 27.2 6.2 50 63-120 57-110 (309)
87 PF03796 DnaB_C: DnaB-like hel 51.9 31 0.00066 27.6 4.7 66 97-176 116-181 (259)
88 PF07355 GRDB: Glycine/sarcosi 51.9 1.5E+02 0.0032 25.1 15.9 205 3-239 4-227 (349)
89 COG1943 Transposase and inacti 51.8 17 0.00037 26.1 2.8 43 148-202 30-78 (136)
90 TIGR02717 AcCoA-syn-alpha acet 51.1 56 0.0012 28.7 6.4 19 153-171 109-127 (447)
91 PF08759 DUF1792: Domain of un 51.1 85 0.0018 24.7 6.6 67 48-119 104-176 (225)
92 cd02068 radical_SAM_B12_BD B12 50.8 42 0.0009 23.4 4.7 25 97-121 54-78 (127)
93 cd06334 PBP1_ABC_ligand_bindin 50.5 89 0.0019 26.2 7.4 67 3-77 141-208 (351)
94 smart00852 MoCF_biosynth Proba 50.5 69 0.0015 22.6 5.9 66 5-75 2-68 (135)
95 PRK00066 ldh L-lactate dehydro 50.4 59 0.0013 27.0 6.2 50 63-120 72-124 (315)
96 cd01337 MDH_glyoxysomal_mitoch 49.5 44 0.00096 27.7 5.3 52 62-121 66-120 (310)
97 TIGR02667 moaB_proteo molybden 49.4 59 0.0013 24.1 5.5 65 4-74 8-73 (163)
98 cd06533 Glyco_transf_WecG_TagA 49.2 53 0.0012 24.5 5.3 60 3-73 47-108 (171)
99 KOG0078 GTP-binding protein SE 49.1 1.2E+02 0.0027 23.5 8.5 61 92-175 97-158 (207)
100 PRK06298 type III secretion sy 48.7 46 0.00099 28.3 5.3 107 92-210 232-344 (356)
101 PRK12772 bifunctional flagella 48.6 40 0.00086 31.0 5.2 106 92-208 494-604 (609)
102 TIGR01763 MalateDH_bact malate 48.3 63 0.0014 26.7 6.0 50 63-120 68-120 (305)
103 TIGR01772 MDH_euk_gproteo mala 48.0 58 0.0012 27.1 5.7 52 62-121 65-119 (312)
104 PTZ00325 malate dehydrogenase; 47.9 64 0.0014 27.0 6.0 50 63-120 75-127 (321)
105 PRK12721 secretion system appa 47.8 46 0.001 28.1 5.2 75 92-173 231-310 (349)
106 cd02071 MM_CoA_mut_B12_BD meth 47.6 93 0.002 21.6 7.9 63 32-119 26-89 (122)
107 KOG1615 Phosphoserine phosphat 47.0 22 0.00048 27.3 2.8 71 94-198 89-159 (227)
108 cd00300 LDH_like L-lactate deh 46.2 69 0.0015 26.4 5.9 49 64-120 66-117 (300)
109 TIGR01404 FlhB_rel_III type II 46.1 48 0.001 28.0 5.0 77 91-174 229-310 (342)
110 PRK00865 glutamate racemase; P 46.0 1.6E+02 0.0034 23.7 9.3 69 34-120 8-76 (261)
111 COG0159 TrpA Tryptophan syntha 45.9 1.6E+02 0.0035 23.9 7.9 56 43-119 75-131 (265)
112 PRK00549 competence damage-ind 45.8 67 0.0014 27.9 6.0 68 1-74 1-69 (414)
113 PRK13109 flhB flagellar biosyn 45.7 54 0.0012 27.9 5.3 104 92-207 240-349 (358)
114 cd04131 Rnd Rnd subfamily. Th 45.2 1.3E+02 0.0027 22.4 9.2 42 64-119 72-113 (178)
115 TIGR00200 cinA_nterm competenc 45.0 67 0.0015 27.9 5.9 68 1-74 1-69 (413)
116 PRK05339 PEP synthetase regula 44.6 1.7E+02 0.0037 23.8 10.2 52 95-178 45-96 (269)
117 TIGR01771 L-LDH-NAD L-lactate 44.0 53 0.0012 27.1 4.9 50 63-120 63-115 (299)
118 COG2201 CheB Chemotaxis respon 43.9 1.4E+02 0.0031 25.3 7.4 52 2-71 1-54 (350)
119 PRK09108 type III secretion sy 43.8 56 0.0012 27.7 5.1 105 92-209 233-343 (353)
120 PF09547 Spore_IV_A: Stage IV 43.6 1.3E+02 0.0028 26.5 7.1 23 87-109 158-180 (492)
121 COG1999 Uncharacterized protei 43.5 1.3E+02 0.0027 23.4 6.7 72 95-172 87-161 (207)
122 PF06866 DUF1256: Protein of u 43.5 66 0.0014 23.9 4.8 55 64-119 24-94 (163)
123 cd05293 LDH_1 A subgroup of L- 43.1 77 0.0017 26.3 5.8 50 63-120 70-122 (312)
124 TIGR00177 molyb_syn molybdenum 43.1 83 0.0018 22.6 5.3 67 3-74 3-76 (144)
125 PF02896 PEP-utilizers_C: PEP- 43.0 38 0.00083 27.8 3.9 49 69-119 200-256 (293)
126 PLN02199 shikimate kinase 42.9 1E+02 0.0022 25.6 6.2 29 98-126 89-117 (303)
127 TIGR00328 flhB flagellar biosy 42.9 62 0.0013 27.4 5.2 104 92-206 231-339 (347)
128 PRK12773 flhB flagellar biosyn 42.1 61 0.0013 29.6 5.2 105 92-207 529-639 (646)
129 PF08497 Radical_SAM_N: Radica 42.0 2E+02 0.0043 23.7 8.5 100 4-119 19-134 (302)
130 PRK12468 flhB flagellar biosyn 41.8 68 0.0015 27.6 5.3 106 93-209 239-349 (386)
131 cd06346 PBP1_ABC_ligand_bindin 41.7 93 0.002 25.4 6.2 42 50-116 182-223 (312)
132 cd02069 methionine_synthase_B1 41.5 1.2E+02 0.0026 23.6 6.3 63 32-119 115-177 (213)
133 cd05291 HicDH_like L-2-hydroxy 41.4 93 0.002 25.6 6.1 50 63-120 67-119 (306)
134 COG1377 FlhB Flagellar biosynt 41.4 63 0.0014 27.4 5.0 92 106-209 257-349 (363)
135 TIGR03728 glyco_access_1 glyco 41.1 1.4E+02 0.0029 24.2 6.5 67 49-120 123-195 (265)
136 PF13552 DUF4127: Protein of u 41.1 97 0.0021 27.7 6.4 55 63-121 57-113 (497)
137 PRK02261 methylaspartate mutas 40.9 1.3E+02 0.0029 21.5 7.9 67 32-123 30-97 (137)
138 cd05290 LDH_3 A subgroup of L- 40.7 1.1E+02 0.0024 25.3 6.3 49 63-120 67-121 (307)
139 cd01410 SIRT7 SIRT7: Eukaryoti 40.7 87 0.0019 24.2 5.4 64 1-76 130-194 (206)
140 PF02581 TMP-TENI: Thiamine mo 40.6 1.1E+02 0.0025 22.8 6.0 42 149-196 40-82 (180)
141 PF13481 AAA_25: AAA domain; P 40.4 1E+02 0.0022 23.0 5.8 59 96-171 127-185 (193)
142 cd01338 MDH_choloroplast_like 40.2 1.1E+02 0.0025 25.5 6.4 51 62-120 76-130 (322)
143 PRK01215 competence damage-ind 40.0 93 0.002 25.2 5.6 65 4-74 7-72 (264)
144 PRK13505 formate--tetrahydrofo 39.9 1.3E+02 0.0029 27.2 6.9 23 181-203 453-475 (557)
145 KOG0840 ATP-dependent Clp prot 39.7 60 0.0013 26.0 4.3 61 2-73 91-159 (275)
146 TIGR00696 wecB_tagA_cpsF bacte 38.6 92 0.002 23.5 5.1 59 4-73 50-109 (177)
147 PF01359 Transposase_1: Transp 38.6 58 0.0012 21.0 3.5 46 66-111 31-76 (81)
148 PRK09417 mogA molybdenum cofac 38.3 1.4E+02 0.0031 22.9 6.1 66 4-74 7-76 (193)
149 PRK08506 replicative DNA helic 38.1 1.6E+02 0.0034 26.2 7.2 25 149-173 326-350 (472)
150 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 38.0 2E+02 0.0043 22.7 9.7 42 64-119 84-125 (232)
151 PRK10100 DNA-binding transcrip 37.7 96 0.0021 24.1 5.3 40 64-121 52-91 (216)
152 PLN02602 lactate dehydrogenase 37.6 1.1E+02 0.0024 26.0 5.9 50 63-120 104-156 (350)
153 cd00758 MoCF_BD MoCF_BD: molyb 37.5 1.5E+02 0.0032 20.9 6.1 65 4-74 3-68 (133)
154 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 37.4 2E+02 0.0043 22.5 10.1 42 64-119 72-113 (222)
155 TIGR01759 MalateDH-SF1 malate 37.1 93 0.002 26.0 5.4 51 62-120 77-131 (323)
156 TIGR02026 BchE magnesium-proto 37.0 3.1E+02 0.0066 24.5 9.2 75 22-121 24-102 (497)
157 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 36.9 1.8E+02 0.0039 21.8 9.9 42 64-119 76-117 (182)
158 PRK14138 NAD-dependent deacety 36.5 74 0.0016 25.4 4.5 67 1-78 153-219 (244)
159 PRK03604 moaC bifunctional mol 36.4 1.2E+02 0.0026 25.3 5.8 65 5-74 160-225 (312)
160 PLN02629 powdery mildew resist 36.3 20 0.00043 30.7 1.3 61 64-124 205-277 (387)
161 PTZ00409 Sir2 (Silent Informat 36.3 96 0.0021 25.2 5.2 65 1-77 174-239 (271)
162 PRK05702 flhB flagellar biosyn 35.8 93 0.002 26.5 5.2 102 93-205 239-345 (359)
163 PF00763 THF_DHG_CYH: Tetrahyd 35.6 1.5E+02 0.0032 20.5 5.8 54 92-170 10-63 (117)
164 KOG1344 Predicted histone deac 35.6 85 0.0018 24.9 4.5 74 42-119 225-299 (324)
165 TIGR02841 spore_YyaC putative 35.4 70 0.0015 23.1 3.7 26 94-119 45-70 (140)
166 PRK08840 replicative DNA helic 35.4 1.5E+02 0.0033 26.2 6.6 28 148-175 352-379 (464)
167 PRK10128 2-keto-3-deoxy-L-rham 35.3 90 0.002 25.3 4.9 56 47-109 155-210 (267)
168 PF05822 UMPH-1: Pyrimidine 5' 35.2 30 0.00065 27.6 2.1 53 2-71 179-231 (246)
169 PRK01254 hypothetical protein; 35.2 3.4E+02 0.0073 25.5 8.7 100 4-119 42-157 (707)
170 PF08423 Rad51: Rad51; InterP 34.9 1.3E+02 0.0027 24.2 5.7 76 90-176 114-189 (256)
171 PF12242 Eno-Rase_NADH_b: NAD( 34.8 56 0.0012 20.9 2.8 31 3-39 40-70 (78)
172 PRK03673 hypothetical protein; 34.7 1.2E+02 0.0026 26.3 5.7 68 1-74 2-70 (396)
173 PLN00106 malate dehydrogenase 34.7 1.5E+02 0.0033 24.7 6.3 52 62-121 84-138 (323)
174 PRK08006 replicative DNA helic 34.5 1.4E+02 0.0031 26.4 6.4 27 149-175 360-386 (471)
175 TIGR03600 phage_DnaB phage rep 34.3 1.7E+02 0.0037 25.3 6.8 28 148-175 327-354 (421)
176 cd01339 LDH-like_MDH L-lactate 34.2 1.1E+02 0.0024 25.0 5.4 53 63-120 65-117 (300)
177 PHA02542 41 41 helicase; Provi 34.0 1.7E+02 0.0038 25.9 6.8 29 148-176 327-355 (473)
178 PRK10840 transcriptional regul 33.9 2.1E+02 0.0046 21.7 8.0 22 100-121 69-90 (216)
179 cd00984 DnaB_C DnaB helicase C 33.6 1.8E+02 0.0039 22.6 6.4 26 149-174 147-172 (242)
180 PRK10239 2-amino-4-hydroxy-6-h 33.6 82 0.0018 23.3 4.0 38 67-120 3-40 (159)
181 TIGR01756 LDH_protist lactate 33.5 1.4E+02 0.0031 24.8 5.9 49 64-120 60-112 (313)
182 PRK06512 thiamine-phosphate py 33.4 64 0.0014 25.3 3.7 40 150-195 56-96 (221)
183 COG2333 ComEC Predicted hydrol 32.9 2.2E+02 0.0049 23.5 6.8 62 4-79 184-247 (293)
184 cd00704 MDH Malate dehydrogena 32.5 1.6E+02 0.0035 24.6 6.1 50 63-120 75-128 (323)
185 KOG3662 Cell division control 32.4 1.3E+02 0.0028 26.1 5.4 40 62-109 91-130 (410)
186 cd05294 LDH-like_MDH_nadp A la 32.1 1.5E+02 0.0032 24.6 5.8 49 63-120 71-123 (309)
187 COG0352 ThiE Thiamine monophos 32.0 78 0.0017 24.7 3.9 39 151-195 51-90 (211)
188 PLN02607 1-aminocyclopropane-1 31.9 1.7E+02 0.0038 25.6 6.5 26 95-120 184-209 (447)
189 PF03709 OKR_DC_1_N: Orn/Lys/A 31.8 1.7E+02 0.0037 20.0 5.4 27 95-121 51-77 (115)
190 PF10566 Glyco_hydro_97: Glyco 31.8 2.9E+02 0.0062 22.6 7.6 140 43-195 28-182 (273)
191 PRK11177 phosphoenolpyruvate-p 31.7 77 0.0017 28.9 4.3 51 69-121 448-506 (575)
192 PRK13602 putative ribosomal pr 31.4 1.5E+02 0.0032 19.1 4.8 46 97-172 15-60 (82)
193 TIGR02370 pyl_corrinoid methyl 31.3 2E+02 0.0042 22.0 6.0 63 32-119 111-175 (197)
194 PRK05442 malate dehydrogenase; 31.2 2E+02 0.0042 24.1 6.4 51 62-120 78-132 (326)
195 PRK13601 putative L7Ae-like ri 31.1 1.5E+02 0.0033 19.2 4.6 45 98-172 13-57 (82)
196 PRK02118 V-type ATP synthase s 31.0 3.7E+02 0.008 23.7 11.0 66 3-77 141-206 (436)
197 COG0039 Mdh Malate/lactate deh 30.4 2.2E+02 0.0048 23.8 6.4 49 63-120 68-120 (313)
198 PRK06904 replicative DNA helic 30.1 2.1E+02 0.0046 25.4 6.7 26 149-174 358-383 (472)
199 PRK06223 malate dehydrogenase; 29.7 1.3E+02 0.0027 24.8 5.1 53 63-120 69-121 (307)
200 PF00205 TPP_enzyme_M: Thiamin 29.7 2E+02 0.0043 20.1 5.9 22 153-174 27-48 (137)
201 COG0683 LivK ABC-type branched 29.1 3E+02 0.0065 23.2 7.3 67 3-78 149-217 (366)
202 PRK05096 guanosine 5'-monophos 28.8 2.2E+02 0.0048 24.1 6.1 52 48-119 108-159 (346)
203 TIGR01758 MDH_euk_cyt malate d 28.5 2.2E+02 0.0047 23.8 6.2 51 62-120 73-127 (324)
204 cd00650 LDH_MDH_like NAD-depen 28.4 1.5E+02 0.0032 23.8 5.1 52 64-120 70-121 (263)
205 cd01409 SIRT4 SIRT4: Eukaryoti 28.2 1.4E+02 0.0029 24.1 4.8 64 1-76 179-243 (260)
206 PRK03512 thiamine-phosphate py 27.9 1.2E+02 0.0025 23.6 4.3 41 150-196 48-89 (211)
207 TIGR03669 urea_ABC_arch urea A 27.8 1.4E+02 0.0031 25.3 5.2 27 47-77 175-201 (374)
208 KOG4175 Tryptophan synthase al 27.8 2.4E+02 0.0052 21.9 5.7 25 152-176 135-159 (268)
209 PF02630 SCO1-SenC: SCO1/SenC; 27.8 2.6E+02 0.0056 20.8 7.0 33 93-125 70-102 (174)
210 PRK15411 rcsA colanic acid cap 27.7 1.8E+02 0.004 22.3 5.4 21 100-120 66-86 (207)
211 TIGR01305 GMP_reduct_1 guanosi 27.6 2.3E+02 0.005 23.9 6.0 50 48-117 107-156 (343)
212 PRK08156 type III secretion sy 27.2 4E+02 0.0086 22.8 10.0 107 93-210 227-338 (361)
213 KOG2126 Glycosylphosphatidylin 27.2 1.1E+02 0.0024 29.2 4.5 103 3-118 155-259 (895)
214 cd01407 SIR2-fam SIR2 family o 27.2 1.7E+02 0.0036 22.8 5.1 65 1-77 143-207 (218)
215 PF01312 Bac_export_2: FlhB Hr 27.1 57 0.0012 27.5 2.6 77 91-174 232-313 (343)
216 COG2403 Predicted GTPase [Gene 27.1 1.2E+02 0.0026 26.1 4.3 24 94-117 282-305 (449)
217 PRK07004 replicative DNA helic 27.0 2.1E+02 0.0046 25.2 6.2 27 148-174 347-373 (460)
218 cd01020 TroA_b Metal binding p 26.7 1.8E+02 0.0038 23.4 5.3 48 94-171 191-238 (264)
219 COG2255 RuvB Holliday junction 26.7 3.8E+02 0.0082 22.3 7.0 114 89-232 29-159 (332)
220 cd01408 SIRT1 SIRT1: Eukaryoti 26.6 2.2E+02 0.0048 22.5 5.7 63 1-76 150-213 (235)
221 COG2197 CitB Response regulato 26.4 3E+02 0.0066 21.2 6.6 40 63-121 45-84 (211)
222 PF04321 RmlD_sub_bind: RmlD s 26.2 1.9E+02 0.0041 23.5 5.4 97 4-120 2-102 (286)
223 PRK14513 ATP-dependent Clp pro 26.1 2.4E+02 0.0053 21.8 5.7 61 2-73 26-94 (201)
224 PLN00112 malate dehydrogenase 25.9 1.9E+02 0.0042 25.5 5.6 51 62-120 174-228 (444)
225 cd06335 PBP1_ABC_ligand_bindin 25.9 3.4E+02 0.0074 22.4 7.1 21 49-73 182-202 (347)
226 PRK11061 fused phosphoenolpyru 25.6 95 0.0021 29.4 3.9 51 69-121 614-672 (748)
227 KOG1360 5-aminolevulinate synt 25.3 3.2E+02 0.0069 23.9 6.5 75 94-174 381-456 (570)
228 cd06340 PBP1_ABC_ligand_bindin 24.9 2.2E+02 0.0049 23.5 5.9 61 3-72 145-207 (347)
229 PRK05636 replicative DNA helic 24.9 2.2E+02 0.0047 25.6 5.9 28 148-175 398-425 (505)
230 TIGR03239 GarL 2-dehydro-3-deo 24.7 1.8E+02 0.0038 23.3 4.8 56 47-109 148-203 (249)
231 PF01915 Glyco_hydro_3_C: Glyc 24.5 3E+02 0.0066 21.3 6.2 11 4-14 19-29 (227)
232 COG3033 TnaA Tryptophanase [Am 24.5 1.8E+02 0.004 24.9 4.9 15 155-169 209-223 (471)
233 KOG2651 rRNA adenine N-6-methy 24.4 3.4E+02 0.0074 23.5 6.5 88 149-236 137-231 (476)
234 PRK00109 Holliday junction res 24.3 2.7E+02 0.0059 19.9 5.9 23 97-121 42-64 (138)
235 PRK13015 3-dehydroquinate dehy 24.3 2.9E+02 0.0063 20.2 5.6 62 149-211 27-92 (146)
236 PRK11557 putative DNA-binding 24.2 1.6E+02 0.0035 23.7 4.7 26 97-124 190-215 (278)
237 PRK05748 replicative DNA helic 24.2 3.8E+02 0.0082 23.5 7.2 28 149-176 339-366 (448)
238 COG3598 RepA RecA-family ATPas 24.1 4.1E+02 0.009 22.6 6.8 63 96-176 181-243 (402)
239 KOG2599 Pyridoxal/pyridoxine/p 24.1 4.1E+02 0.0088 21.8 8.2 101 2-125 9-124 (308)
240 cd06338 PBP1_ABC_ligand_bindin 24.0 3E+02 0.0064 22.6 6.4 46 49-119 185-230 (345)
241 cd03770 SR_TndX_transposase Se 24.0 2.2E+02 0.0048 20.2 4.9 54 95-173 54-107 (140)
242 cd06336 PBP1_ABC_ligand_bindin 23.9 2.7E+02 0.0059 23.0 6.2 86 3-118 139-227 (347)
243 KOG1736 Glia maturation factor 23.9 1.2E+02 0.0026 21.4 3.2 63 100-164 58-120 (143)
244 PF09370 TIM-br_sig_trns: TIM- 23.9 2.6E+02 0.0057 22.7 5.5 57 64-124 170-226 (268)
245 KOG1625 DNA polymerase alpha-p 23.9 4.4E+02 0.0095 24.0 7.3 19 193-211 490-508 (600)
246 PRK10558 alpha-dehydro-beta-de 23.8 2.1E+02 0.0046 23.0 5.2 54 49-109 157-210 (256)
247 TIGR00361 ComEC_Rec2 DNA inter 23.8 3.4E+02 0.0074 25.3 7.2 61 4-78 576-637 (662)
248 TIGR01757 Malate-DH_plant mala 23.7 1.7E+02 0.0037 25.2 4.8 50 63-120 119-172 (387)
249 COG4030 Uncharacterized protei 23.7 41 0.00089 26.6 1.0 22 98-119 269-290 (315)
250 PRK05395 3-dehydroquinate dehy 23.5 3E+02 0.0065 20.1 5.9 62 149-211 27-92 (146)
251 PF07555 NAGidase: beta-N-acet 23.5 1.7E+02 0.0038 24.3 4.7 31 89-122 50-80 (306)
252 cd01336 MDH_cytoplasmic_cytoso 23.4 3.2E+02 0.0069 22.8 6.3 50 63-120 77-130 (325)
253 PF07755 DUF1611: Protein of u 23.4 3.3E+02 0.0071 22.6 6.2 22 152-173 273-294 (301)
254 PRK15029 arginine decarboxylas 23.0 5.2E+02 0.011 24.7 8.1 93 4-121 2-95 (755)
255 cd08071 MPN_DUF2466 Mov34/MPN/ 23.0 2.6E+02 0.0056 19.2 6.3 56 97-172 47-102 (113)
256 PRK14172 bifunctional 5,10-met 22.9 4.1E+02 0.0088 21.8 6.6 29 91-119 11-42 (278)
257 PRK03692 putative UDP-N-acetyl 22.9 2.1E+02 0.0045 22.9 4.9 19 51-73 148-166 (243)
258 cd01413 SIR2_Af2 SIR2_Af2: Arc 22.6 2.1E+02 0.0046 22.3 4.9 65 1-77 146-211 (222)
259 KOG3818 DNA polymerase epsilon 22.4 4.7E+02 0.01 23.1 7.0 65 39-120 259-323 (525)
260 COG0159 TrpA Tryptophan syntha 22.3 3.5E+02 0.0077 22.0 6.1 79 97-177 80-159 (265)
261 TIGR00640 acid_CoA_mut_C methy 21.9 3E+02 0.0065 19.5 8.9 65 32-121 29-94 (132)
262 PF07125 DUF1378: Protein of u 21.7 1.4E+02 0.0031 17.6 2.7 17 195-211 23-39 (59)
263 PRK08760 replicative DNA helic 21.6 3.3E+02 0.0071 24.2 6.3 27 149-175 363-389 (476)
264 TIGR03471 HpnJ hopanoid biosyn 21.5 2.2E+02 0.0049 25.1 5.4 71 23-121 37-107 (472)
265 PF02698 DUF218: DUF218 domain 21.4 3.1E+02 0.0068 19.5 5.9 47 65-121 2-48 (155)
266 cd06345 PBP1_ABC_ligand_bindin 21.4 3.7E+02 0.0079 22.2 6.5 65 3-76 145-211 (344)
267 PF03652 UPF0081: Uncharacteri 21.4 1.6E+02 0.0035 21.0 3.7 46 63-119 50-95 (135)
268 COG2185 Sbm Methylmalonyl-CoA 21.3 3.3E+02 0.0072 19.8 10.2 70 24-118 30-100 (143)
269 PF13701 DDE_Tnp_1_4: Transpos 21.2 1.7E+02 0.0037 25.7 4.5 34 89-122 195-228 (448)
270 COG0552 FtsY Signal recognitio 21.0 5.2E+02 0.011 21.9 7.6 37 66-119 139-175 (340)
271 cd02072 Glm_B12_BD B12 binding 21.0 3.2E+02 0.0068 19.4 7.9 67 32-123 26-93 (128)
272 COG0703 AroK Shikimate kinase 21.0 1.8E+02 0.0039 21.9 3.9 38 112-178 3-40 (172)
273 PRK13365 protocatechuate 4,5-d 21.0 2.3E+02 0.0051 23.1 5.0 25 92-117 31-55 (279)
274 cd08778 Death_TNFRSF21 Death d 21.0 1E+02 0.0022 19.1 2.1 54 157-210 6-71 (84)
275 TIGR01233 lacG 6-phospho-beta- 20.9 1.7E+02 0.0037 25.9 4.4 73 91-178 88-160 (467)
276 PRK04940 hypothetical protein; 20.8 1E+02 0.0023 23.3 2.7 65 4-78 61-137 (180)
277 cd04118 Rab24 Rab24 subfamily. 20.8 3.6E+02 0.0077 19.9 8.1 41 64-119 73-113 (193)
278 TIGR01417 PTS_I_fam phosphoeno 20.5 1.5E+02 0.0033 27.0 4.1 49 69-119 447-503 (565)
279 TIGR03772 anch_rpt_subst ancho 20.4 3.5E+02 0.0076 24.2 6.2 24 94-119 405-428 (479)
280 PRK01018 50S ribosomal protein 20.4 2.8E+02 0.006 18.5 5.1 45 97-171 20-64 (99)
281 KOG0734 AAA+-type ATPase conta 20.3 3.5E+02 0.0076 24.8 6.0 128 95-240 382-520 (752)
282 PRK10886 DnaA initiator-associ 20.2 4.1E+02 0.0088 20.4 8.4 25 96-122 123-147 (196)
No 1
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=100.00 E-value=8.6e-44 Score=262.70 Aligned_cols=233 Identities=55% Similarity=0.905 Sum_probs=211.7
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
|+|+|++||||||+.+|..++|...|++.+.++.+++++|++|++|++++..+.++.+......|.+++|++|+||.+..
T Consensus 5 ~rp~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~RGysGynSRwALkvL~~ifp~~~s~~p~lvtVffGaNDs~l~ 84 (245)
T KOG3035|consen 5 MRPRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLLRGYSGYNSRWALKVLPEIFPKGSSIQPVLVTVFFGANDSCLP 84 (245)
T ss_pred ccccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhhcccccchhHHHHHHhhhhccccccCCceEEEEEecCccccCC
Confidence 78999999999999999999999999999999999999999999999999999999998777899999999999999988
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHH
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIET 160 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (247)
...+..++++.++|++||++|++.++...|.++||++++||+.+..+.... .+.......|.|+....|++++.++
T Consensus 85 ~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~----~e~~~~~~~RtNe~~~~Ya~ac~~l 160 (245)
T KOG3035|consen 85 EPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQE----QEPYVLGPERTNETVGTYAKACANL 160 (245)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHh----ccchhccchhhhhHHHHHHHHHHHH
Confidence 877778999999999999999999999999999999999999887655533 2233344568999999999999999
Q ss_pred HHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhcCCCC--CCCCCCCCC-CCCCCCCCccchH
Q 025869 161 AKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVAGLSS--EEMPYDFPH-HSQIDAKNPEKTF 237 (247)
Q Consensus 161 a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~~~~~--~~~p~~~p~-~~~~~~~~~~~~~ 237 (247)
|++.|+.+||++..+.+..++...++.||+|+|++|++++.+.+++.|++++..+ ..||..+|+ ..-.+..++.+.+
T Consensus 161 a~e~~l~~vdlws~~Q~~~dw~~~~ltDGLHlS~~G~~ivf~Ei~kvl~ea~~~~~~k~lp~~fp~~~~~~d~k~~~~~~ 240 (245)
T KOG3035|consen 161 AQEIGLYVVDLWSKMQESDDWQTSCLTDGLHLSPKGNKIVFDEILKVLKEAWPSPSPKNLPLEFPHRIVLADGKNTLSLF 240 (245)
T ss_pred HHHhCCeeeeHHhhhhhcccHHHHHhccceeeccccchhhHHHHHHHHHhccCCCCcccCCccCCcccccccccchhhhh
Confidence 9999999999999999988888899999999999999999999999999996655 899999999 6667777777644
No 2
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=100.00 E-value=9.4e-33 Score=213.46 Aligned_cols=197 Identities=55% Similarity=0.929 Sum_probs=156.4
Q ss_pred eEEEEcccccccccCCC--cHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 4 QIVLFGDSITQQSFGSA--GWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~--~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
||+++|||+|++..... +|...|.+.+..++.++|.|++|.++..+..++++........+||+|||++|+||+....
T Consensus 1 ~i~~~GDSit~g~~~~~~~~~~~~l~~~~~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G~ND~~~~~ 80 (199)
T cd01838 1 KIVLFGDSITQFSFDQGEFGFGAALADVYSRKLDVINRGFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFGANDAALPG 80 (199)
T ss_pred CEEEecCcccccccCCCCCcHHHHHHHHhcchhheeccCCCcccHHHHHHHHHHhcCccccCCceEEEEEecCccccCCC
Confidence 69999999995433233 7999999999877899999999999998888887777541112799999999999997532
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHH
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETA 161 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 161 (247)
.. ...+.++|.++++.+++.+++..|+++|++++++|.......... ........+.++.+..|++.++++|
T Consensus 81 ~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a 152 (199)
T cd01838 81 QP---QHVPLDEYKENLRKIVSHLKSLSPKTKVILITPPPVDEEAWEKSL-----EDGGSQPGRTNELLKQYAEACVEVA 152 (199)
T ss_pred CC---CcccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHhhhh-----ccccCCccccHHHHHHHHHHHHHHH
Confidence 10 235789999999999999999888999999999887654321100 0011223456778899999999999
Q ss_pred HhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 162 KDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 162 ~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
+++++.|+|++..+....+....+..||+|||++||++||+.+.+.|
T Consensus 153 ~~~~~~~iD~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~~ 199 (199)
T cd01838 153 EELGVPVIDLWTAMQEEAGWLESLLTDGLHFSSKGYELLFEEIVKVI 199 (199)
T ss_pred HHhCCcEEEHHHHHHhccCchhhhcCCCCCcCHhHHHHHHHHHHhhC
Confidence 99999999999998876555557789999999999999999998764
No 3
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=7.4e-31 Score=201.77 Aligned_cols=179 Identities=19% Similarity=0.209 Sum_probs=145.5
Q ss_pred ceEEEEcccccccccC----CCcHHHHHHHHhcc----cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 3 PQIVLFGDSITQQSFG----SAGWGAALADAYCR----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~----~~~~~~~l~~~~~~----~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
.+|+++|||++ .|++ ..+|+..+.+.+.. .+++.|.|++|.++..++.+++... ..+||+|+|++|+
T Consensus 3 ~~i~~~GDSit-~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~----~~~pd~Vii~~G~ 77 (191)
T cd01836 3 LRLLVLGDSTA-AGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLP----ETRFDVAVISIGV 77 (191)
T ss_pred eEEEEEecccc-ccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhcc----cCCCCEEEEEecc
Confidence 48999999999 6765 34688887777743 5789999999999998888777732 4599999999999
Q ss_pred ccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHH
Q 025869 75 NDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYA 154 (247)
Q Consensus 75 ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
||+... .+.++|.++++++++.+++++|+++|+++++||+......+.. .....++...++|
T Consensus 78 ND~~~~--------~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~~----------~~~~~~~~~~~~n 139 (191)
T cd01836 78 NDVTHL--------TSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQP----------LRWLLGRRARLLN 139 (191)
T ss_pred cCcCCC--------CCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcHH----------HHHHHHHHHHHHH
Confidence 999742 4789999999999999999889999999999887643211110 1122455677999
Q ss_pred HHHHHHHHhc-CCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHH
Q 025869 155 RQCIETAKDL-GVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 155 ~~~~~~a~~~-~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~ 209 (247)
+.++++|.+. ++.|+|++..+. ...+..||+|||++||++||+.+.+.|+
T Consensus 140 ~~~~~~a~~~~~~~~id~~~~~~-----~~~~~~DglHpn~~Gy~~~a~~l~~~i~ 190 (191)
T cd01836 140 RALERLASEAPRVTLLPATGPLF-----PALFASDGFHPSAAGYAVWAEALAPAIA 190 (191)
T ss_pred HHHHHHHhcCCCeEEEecCCccc-----hhhccCCCCCCChHHHHHHHHHHHHHHh
Confidence 9999999998 999999998765 2356789999999999999999999886
No 4
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=7.6e-31 Score=204.33 Aligned_cols=181 Identities=23% Similarity=0.323 Sum_probs=143.0
Q ss_pred eEEEEcccccccccC---------CCcHHHHHHHHhccc---CcEEecCCCCCchHH---------HHHHhhhhcCCCCC
Q 025869 4 QIVLFGDSITQQSFG---------SAGWGAALADAYCRK---ADVLLRGYGGYNTRW---------ALFLLHHIFPLDNS 62 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~---------~~~~~~~l~~~~~~~---~~v~n~g~~G~~t~~---------~~~~l~~~~~~~~~ 62 (247)
+|++||||+| .|+. ..+|+..|++.+... ++++|.|++|.++.+ .+.++++.+.. .
T Consensus 1 ~I~~~GDSiT-~G~~~~~~~~~~~~~~w~~~L~~~l~~~~~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~--~ 77 (208)
T cd01839 1 TILCFGDSNT-WGIIPDTGGRYPFEDRWPGVLEKALGANGENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALES--H 77 (208)
T ss_pred CEEEEecCcc-cCCCCCCCCcCCcCCCCHHHHHHHHccCCCCeEEEecCcCCcceeccCccccCcchHHHHHHHHHh--C
Confidence 6999999999 5654 348999999999766 899999999999852 34555555532 2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCcchhhhHhhhhhhh
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-----PIMLVVLITPPPVDEDGRMEYAKSLYGE 137 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-----p~~~ivl~~~~p~~~~~~~~~~~~~~~~ 137 (247)
.+||+|+|++|+||+... ...+.+++.++++++++.+++.. |+++|+++++||+..... ..
T Consensus 78 ~~pd~vii~lGtND~~~~------~~~~~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~~~~~~-~~------- 143 (208)
T cd01839 78 SPLDLVIIMLGTNDLKSY------FNLSAAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPIRTPKG-SL------- 143 (208)
T ss_pred CCCCEEEEeccccccccc------cCCCHHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCccCcccc-ch-------
Confidence 489999999999998742 12478999999999999999976 789999999998722111 00
Q ss_pred cccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHh
Q 025869 138 KAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
.....+.++..+.|+++++++|++.++.|+|++..+. .+..||+|||++||+.||+.+.+.|++
T Consensus 144 --~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~~~~~~-------~~~~DGvH~~~~G~~~~a~~l~~~i~~ 207 (208)
T cd01839 144 --AGKFAGAEEKSKGLADAYRALAEELGCHFFDAGSVGS-------TSPVDGVHLDADQHAALGQALASVIRA 207 (208)
T ss_pred --hhhhccHHHHHHHHHHHHHHHHHHhCCCEEcHHHHhc-------cCCCCccCcCHHHHHHHHHHHHHHHhh
Confidence 0112235667889999999999999999999987653 256899999999999999999999875
No 5
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=99.97 E-value=1.2e-30 Score=201.71 Aligned_cols=183 Identities=27% Similarity=0.337 Sum_probs=142.2
Q ss_pred ceEEEEcccccccccCC----CcHHHHHHHHhcccCcEEecCCCCCchHHHHH--HhhhhcCCCCCCCCcEEEEEccCcc
Q 025869 3 PQIVLFGDSITQQSFGS----AGWGAALADAYCRKADVLLRGYGGYNTRWALF--LLHHIFPLDNSNPPVATTIFFGAND 76 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~----~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~--~l~~~~~~~~~~~~d~vii~~G~ND 76 (247)
|+|+++|||++ .|++. .+|...|.+.+...+.+.|.|++|.++..+.. +++..+.. ..+||+|+|++|+||
T Consensus 1 ~~i~~~GDS~t-~G~~~~~~~~~w~~~l~~~~~~~~~v~N~gi~G~ts~~~~~~~~~~~~l~~--~~~pdlVii~~G~ND 77 (198)
T cd01821 1 PTIFLAGDSTV-ADYDPGAPQAGWGQALPQYLDTGITVVNHAKGGRSSRSFRDEGRWDAILKL--IKPGDYVLIQFGHND 77 (198)
T ss_pred CEEEEEecCCc-ccCCCCCCCCChHHHHHHHhCCCCEEEeCCCCCccHHHHHhCCcHHHHHhh--CCCCCEEEEECCCCC
Confidence 68999999999 56543 79999999999878999999999999986543 44444432 237999999999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHH
Q 025869 77 AALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQ 156 (247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+..... ....+.++|.++++++++.+++. ++++++++++|...... ....+..+.+|+++
T Consensus 78 ~~~~~~---~~~~~~~~~~~nl~~ii~~~~~~--~~~~il~tp~~~~~~~~---------------~~~~~~~~~~~~~~ 137 (198)
T cd01821 78 QKPKDP---EYTEPYTTYKEYLRRYIAEARAK--GATPILVTPVTRRTFDE---------------GGKVEDTLGDYPAA 137 (198)
T ss_pred CCCCCC---CCCCcHHHHHHHHHHHHHHHHHC--CCeEEEECCccccccCC---------------CCcccccchhHHHH
Confidence 975321 12357899999999999999998 67799998877432110 00244567899999
Q ss_pred HHHHHHhcCCCeeechHHHHhc------cccc---ccccccccCCChhHHHHHHHHHHHHH
Q 025869 157 CIETAKDLGVPFIDLWSKMQET------EGWQ---KKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 157 ~~~~a~~~~v~~vD~~~~~~~~------~~~~---~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
++++|+++++.|+|++..+... .... ..+..||+|||++||++||+.+++.|
T Consensus 138 ~~~~a~~~~~~~vD~~~~~~~~~~~~g~~~~~~~~~~~~~DgvHp~~~G~~~~a~~i~~~~ 198 (198)
T cd01821 138 MRELAAEEGVPLIDLNAASRALYEAIGPEKSKKYFPEGPGDNTHFSEKGADVVARLVAEEL 198 (198)
T ss_pred HHHHHHHhCCCEEecHHHHHHHHHHhChHhHHhhCcCCCCCCCCCCHHHHHHHHHHHHhhC
Confidence 9999999999999999887532 1111 25688999999999999999998765
No 6
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=99.97 E-value=1.8e-30 Score=196.68 Aligned_cols=172 Identities=24% Similarity=0.384 Sum_probs=138.3
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhh-hhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLH-HIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~-~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
++|+++|||+++ | |.. .......+.++|.|++|.++..+..+++ .+.. .+||+|+|++|+||+...
T Consensus 1 ~~iv~~GdS~t~-~-----~~~--~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~----~~pd~v~i~~G~ND~~~~- 67 (174)
T cd01841 1 KNIVFIGDSLFE-G-----WPL--YEAEGKGKTVNNLGIAGISSRQYLEHIEPQLIQ----KNPSKVFLFLGTNDIGKE- 67 (174)
T ss_pred CCEEEEcchhhh-c-----Cch--hhhccCCCeEEecccccccHHHHHHHHHHHHHh----cCCCEEEEEeccccCCCC-
Confidence 479999999995 4 321 1222456889999999999998888874 4333 489999999999999742
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHH
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETA 161 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 161 (247)
.+.+++.++++.+++.+++..|+++|++++++|...... .....+....+||++++++|
T Consensus 68 -------~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~--------------~~~~~~~~~~~~n~~l~~~a 126 (174)
T cd01841 68 -------VSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE--------------IKTRSNTRIQRLNDAIKELA 126 (174)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc--------------cccCCHHHHHHHHHHHHHHH
Confidence 388999999999999999999999999999888754321 01224567889999999999
Q ss_pred HhcCCCeeechHHHHhccc-ccccccccccCCChhHHHHHHHHHHHHH
Q 025869 162 KDLGVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 162 ~~~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
+++++.|||++..+....+ ....+..||+|||++||++||+.++++|
T Consensus 127 ~~~~~~~id~~~~~~~~~~~~~~~~~~DglH~n~~Gy~~~a~~l~~~~ 174 (174)
T cd01841 127 PELGVTFIDLNDVLVDEFGNLKKEYTTDGLHFNPKGYQKLLEILEEYL 174 (174)
T ss_pred HHCCCEEEEcHHHHcCCCCCccccccCCCcccCHHHHHHHHHHHHhhC
Confidence 9999999999998876433 2336789999999999999999998765
No 7
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.97 E-value=4.7e-30 Score=196.82 Aligned_cols=176 Identities=18% Similarity=0.195 Sum_probs=139.4
Q ss_pred eEEEEcccccccccC---CCcHHHHHHHHhcccCcEEecCCCCCchHHH-------HHHhhhhcCCCCCCCCcEEEEEcc
Q 025869 4 QIVLFGDSITQQSFG---SAGWGAALADAYCRKADVLLRGYGGYNTRWA-------LFLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~-------~~~l~~~~~~~~~~~~d~vii~~G 73 (247)
||+++|||+| .|++ ..+|+..|++.++..+.+.|.|++|.++... ...+.... ..+||+|+|++|
T Consensus 2 ~i~~~GDSit-~G~~~~~~~~~~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~----~~~pd~Vii~~G 76 (188)
T cd01827 2 KVACVGNSIT-EGAGLRAYDSYPSPLAQMLGDGYEVGNFGKSARTVLNKGDHPYMNEERYKNAL----AFNPNIVIIKLG 76 (188)
T ss_pred eEEEEecccc-cccCCCCCCchHHHHHHHhCCCCeEEeccCCcceeecCCCcCccchHHHHHhh----ccCCCEEEEEcc
Confidence 7999999999 5655 4689999999998778999999999987421 12223333 348999999999
Q ss_pred CccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHH
Q 025869 74 ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVY 153 (247)
Q Consensus 74 ~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
+||..... ....++|.++++.+++.+++.+|+++|++++++|....... ....+.....+
T Consensus 77 ~ND~~~~~------~~~~~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~--------------~~~~~~~~~~~ 136 (188)
T cd01827 77 TNDAKPQN------WKYKDDFKKDYETMIDSFQALPSKPKIYICYPIPAYYGDGG--------------FINDNIIKKEI 136 (188)
T ss_pred cCCCCCCC------CccHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCC--------------ccchHHHHHHH
Confidence 99997421 12468899999999999999999999999998876432110 01123455689
Q ss_pred HHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 154 ARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 154 ~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
+++++++|+++++.|||++..+.... .+..||+|||++||++||+.+++.|
T Consensus 137 ~~~~~~~a~~~~~~~vD~~~~~~~~~----~~~~Dg~Hpn~~G~~~~A~~i~~~i 187 (188)
T cd01827 137 QPMIDKIAKKLNLKLIDLHTPLKGKP----ELVPDWVHPNEKGAYILAKVVYKAI 187 (188)
T ss_pred HHHHHHHHHHcCCcEEEccccccCCc----cccCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999998876543 5678999999999999999999887
No 8
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.97 E-value=2.1e-29 Score=192.40 Aligned_cols=177 Identities=27% Similarity=0.353 Sum_probs=143.9
Q ss_pred eEEEEcccccccccCC---CcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 4 QIVLFGDSITQQSFGS---AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~---~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+|+++|||++ .|++. .+|...+....+ +.++|.|++|.++.+..++++.... ..+||+|++++|+||....
T Consensus 2 ~i~~~GDSi~-~g~~~~~~~~~~~~l~~~~~--~~v~n~g~~G~~~~~~l~~l~~~~~---~~~~d~v~i~~G~ND~~~~ 75 (183)
T cd04501 2 RVVCLGDSIT-YGYPVGPEASWVNLLAEFLG--KEVINRGINGDTTSQMLVRFYEDVI---ALKPAVVIIMGGTNDIIVN 75 (183)
T ss_pred eEEEEccccc-cCcCCCCcchHHHHHHhhcC--CeEEecCcCCccHHHHHHHHHHHHH---hcCCCEEEEEeccCccccC
Confidence 6999999999 45553 479998888766 7899999999999988877766443 3489999999999999743
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHH
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIET 160 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (247)
.+.++|.++++++++.+++. ++++|+++++|.......+ .....+....+||++++++
T Consensus 76 --------~~~~~~~~~~~~li~~~~~~--~~~~il~~~~p~~~~~~~~------------~~~~~~~~~~~~n~~~~~~ 133 (183)
T cd04501 76 --------TSLEMIKDNIRSMVELAEAN--GIKVILASPLPVDDYPWKP------------QWLRPANKLKSLNRWLKDY 133 (183)
T ss_pred --------CCHHHHHHHHHHHHHHHHHC--CCcEEEEeCCCcCccccch------------hhcchHHHHHHHHHHHHHH
Confidence 37899999999999999987 6778999988876543211 1123566788999999999
Q ss_pred HHhcCCCeeechHHHHhccc--ccccccccccCCChhHHHHHHHHHHHHH
Q 025869 161 AKDLGVPFIDLWSKMQETEG--WQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 161 a~~~~v~~vD~~~~~~~~~~--~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
|++.++.|||++..+.+..+ ....+..||+|||++||+.||+.+.+.|
T Consensus 134 a~~~~v~~vd~~~~~~~~~~~~~~~~~~~DgvHp~~~Gy~~~a~~i~~~~ 183 (183)
T cd04501 134 ARENGLLFLDFYSPLLDERNVGLKPGLLTDGLHPSREGYRVMAPLAEKAL 183 (183)
T ss_pred HHHcCCCEEechhhhhccccccccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999887542 2346789999999999999999998764
No 9
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=99.96 E-value=1.3e-28 Score=188.94 Aligned_cols=172 Identities=17% Similarity=0.310 Sum_probs=135.0
Q ss_pred ceEEEEcccccccccC---CCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 3 PQIVLFGDSITQQSFG---SAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
.+|+|+|||+| .|++ ..+|+..+.+.+.....++|.|++|.++..+..+++..+. ..+||+|+|++|+||...
T Consensus 11 ~~iv~~GDSit-~G~~~~~~~~w~~~l~~~l~~~~~v~N~Gi~G~tt~~~~~rl~~~l~---~~~pd~Vii~~GtND~~~ 86 (191)
T PRK10528 11 DTLLILGDSLS-AGYRMPASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLK---QHQPRWVLVELGGNDGLR 86 (191)
T ss_pred CEEEEEeCchh-hcCCCCccCchHHHHHHHHhhCCCEEecCcCcccHHHHHHHHHHHHH---hcCCCEEEEEeccCcCcc
Confidence 58999999999 5543 4589999999997777899999999999988888877653 248999999999999863
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC-CCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHH
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP-PPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCI 158 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (247)
+++.+++.++++.+++++++.+ ++++++.+ +|... .......++++++
T Consensus 87 --------~~~~~~~~~~l~~li~~~~~~~--~~~ill~~~~P~~~---------------------~~~~~~~~~~~~~ 135 (191)
T PRK10528 87 --------GFPPQQTEQTLRQIIQDVKAAN--AQPLLMQIRLPANY---------------------GRRYNEAFSAIYP 135 (191)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHcC--CCEEEEEeecCCcc---------------------cHHHHHHHHHHHH
Confidence 3588999999999999999984 44555542 22100 0123357889999
Q ss_pred HHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 159 ETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 159 ~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
++|+++++.|+|++..... .....+..||+|||++||+.||+.+++.|++.
T Consensus 136 ~~a~~~~v~~id~~~~~~~--~~~~~~~~DGiHpn~~Gy~~~A~~i~~~l~~~ 186 (191)
T PRK10528 136 KLAKEFDIPLLPFFMEEVY--LKPQWMQDDGIHPNRDAQPFIADWMAKQLQPL 186 (191)
T ss_pred HHHHHhCCCccHHHHHhhc--cCHhhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998744332 11234678999999999999999999998764
No 10
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=1.6e-28 Score=189.13 Aligned_cols=182 Identities=21% Similarity=0.373 Sum_probs=140.3
Q ss_pred ceEEEEcccccccccC---CCcHHHHHHHHhc---ccCcEEecCCCCCchHHHHHHhhhhcCC-CCCCCCcEEEEEccCc
Q 025869 3 PQIVLFGDSITQQSFG---SAGWGAALADAYC---RKADVLLRGYGGYNTRWALFLLHHIFPL-DNSNPPVATTIFFGAN 75 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~---~~~~~~~l~~~~~---~~~~v~n~g~~G~~t~~~~~~l~~~~~~-~~~~~~d~vii~~G~N 75 (247)
.+|+++|||+| .|++ ..+|+..+.+.+. ..+.+.|.|++|.++.....+++..... ....+||+|+|++|+|
T Consensus 2 ~~i~~lGDSit-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~N 80 (193)
T cd01835 2 KRLIVVGDSLV-YGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLN 80 (193)
T ss_pred cEEEEEcCccc-cCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCc
Confidence 38999999999 5654 4689999887763 4588999999999999887776554321 1225899999999999
Q ss_pred cccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHH
Q 025869 76 DAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYAR 155 (247)
Q Consensus 76 D~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
|...... .....+.++|+++++++++.++. +++|++++++|+.+... ...++.+.++++
T Consensus 81 D~~~~~~--~~~~~~~~~~~~~~~~ii~~~~~---~~~vi~~~~~p~~~~~~----------------~~~~~~~~~~n~ 139 (193)
T cd01835 81 DTARGGR--KRPQLSARAFLFGLNQLLEEAKR---LVPVLVVGPTPVDEAKM----------------PYSNRRIARLET 139 (193)
T ss_pred ccccccC--cccccCHHHHHHHHHHHHHHHhc---CCcEEEEeCCCcccccc----------------chhhHHHHHHHH
Confidence 9975421 12235778999999999998864 45689999888754320 023557789999
Q ss_pred HHHHHHHhcCCCeeechHHHHhccccccccc-ccccCCChhHHHHHHHHHHH
Q 025869 156 QCIETAKDLGVPFIDLWSKMQETEGWQKKFL-SDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 156 ~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~-~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
+++++|+++++.|||++..+.+...+...+. .||+|||++||++||+.+..
T Consensus 140 ~~~~~a~~~~~~~vd~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~~~~ 191 (193)
T cd01835 140 AFAEVCLRRDVPFLDTFTPLLNHPQWRRELAATDGIHPNAAGYGWLAWLVLH 191 (193)
T ss_pred HHHHHHHHcCCCeEeCccchhcCcHHHHhhhccCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998887654443444 59999999999999999865
No 11
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=3.1e-29 Score=192.32 Aligned_cols=182 Identities=21% Similarity=0.212 Sum_probs=139.5
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcC-CCCCCCCcEEEEEccCccccccCC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFP-LDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~-~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
||+++|||++++ ..|+..+...++ +.+.|.|++|.++............ .....+||+|+|++|+||....
T Consensus 1 ~iv~~GDS~t~g----~~~~~~l~~~l~--~~v~N~g~~G~t~~~~~~~~~~~~~~~l~~~~pd~Vii~~G~ND~~~~-- 72 (189)
T cd01825 1 RIAQLGDSHIAG----DFFTDVLRGLLG--VIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGTNEAFNK-- 72 (189)
T ss_pred CeeEecCccccc----cchhhHHHhhhc--eEEecCccCchhhhhhhccCHHHHHHHHhhCCCCEEEEECCCcccccC--
Confidence 699999999963 379999998885 8899999999988653321111110 0113489999999999998642
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHH
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAK 162 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 162 (247)
..+.++|.++++.+++.+++++|+++|+++++++....... .....+...+.++++++++|+
T Consensus 73 -----~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~a~ 134 (189)
T cd01825 73 -----QLNASEYRQQLREFIKRLRQILPNASILLVGPPDSLQKTGA-------------GRWRTPPGLDAVIAAQRRVAK 134 (189)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCC-------------CCcccCCcHHHHHHHHHHHHH
Confidence 24689999999999999999999999999999875332210 011234457799999999999
Q ss_pred hcCCCeeechHHHHhccc-----ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 163 DLGVPFIDLWSKMQETEG-----WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 163 ~~~v~~vD~~~~~~~~~~-----~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
++++.|+|++..+..... ....+..||+|||++||+.||+.+.+.|+++
T Consensus 135 ~~~v~~vd~~~~~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~~i~~~ 188 (189)
T cd01825 135 EEGIAFWDLYAAMGGEGGIWQWAEPGLARKDYVHLTPRGYERLANLLYEALLKA 188 (189)
T ss_pred HcCCeEEeHHHHhCCcchhhHhhcccccCCCcccCCcchHHHHHHHHHHHHHhh
Confidence 999999999998875311 1234578999999999999999999999874
No 12
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=2.6e-28 Score=183.98 Aligned_cols=166 Identities=30% Similarity=0.450 Sum_probs=137.5
Q ss_pred EEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCC
Q 025869 5 IVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTS 84 (247)
Q Consensus 5 i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~ 84 (247)
|+++|||+++ |. +|.. .+ .++.+.|.|++|.++....+++.+... .+||+|++++|+||+..
T Consensus 2 v~~~GdSi~~-~~---~~~~----~~-~~~~v~n~g~~G~~~~~~~~~l~~~~~----~~pd~vvl~~G~ND~~~----- 63 (169)
T cd01828 2 LVFLGDSLTE-GG---PWAL----LF-PDVKVANRGISGDTTRGLLARLDEDVA----LQPKAIFIMIGINDLAQ----- 63 (169)
T ss_pred EEEecchhhc-cC---cHHH----hc-CCCceEecCcccccHHHHHHHHHHHhc----cCCCEEEEEeeccCCCC-----
Confidence 7999999995 33 4553 23 347899999999999988888877663 38999999999999963
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhc
Q 025869 85 ERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDL 164 (247)
Q Consensus 85 ~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 164 (247)
..+.+++.++++++++.+++.+|+++|++++++|.... ....+....+|+++++++|++.
T Consensus 64 ---~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~-----------------~~~~~~~~~~~n~~l~~~a~~~ 123 (169)
T cd01828 64 ---GTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGEL-----------------KSIPNEQIEELNRQLAQLAQQE 123 (169)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCcc-----------------CcCCHHHHHHHHHHHHHHHHHC
Confidence 25789999999999999999888999999999886521 1124456789999999999999
Q ss_pred CCCeeechHHHHhccc-ccccccccccCCChhHHHHHHHHHHHHH
Q 025869 165 GVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 165 ~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
++.|+|+++.+.+..+ ....+..||+|||++||++||+.+++.|
T Consensus 124 ~~~~id~~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~i~~~~ 168 (169)
T cd01828 124 GVTFLDLWAVFTNADGDLKNEFTTDGLHLNAKGYAVWAAALQPYL 168 (169)
T ss_pred CCEEEechhhhcCCCCCcchhhccCccccCHHHHHHHHHHHHHhh
Confidence 9999999998876543 3457789999999999999999999887
No 13
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.96 E-value=2.2e-28 Score=184.80 Aligned_cols=168 Identities=23% Similarity=0.329 Sum_probs=135.3
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~ 83 (247)
.|+++|||+++ .|........ +++++|.|++|.++.....++.+... ..+||+|+|++|+||+...
T Consensus 1 ~i~~~g~s~~~------~w~~~~~~~~--~~~v~N~Gi~G~~~~~~~~~~~~~~~---~~~p~~vvi~~G~ND~~~~--- 66 (171)
T cd04502 1 GILFYGSSSIR------LWDTLADDLA--PLPVVNRGFGGSTLADCLHYFDRLVL---PYQPRRVVLYAGDNDLASG--- 66 (171)
T ss_pred CEEEEcCchhc------chhhHHHhCC--CCceeecCcccchHHHHHHHHHhhhc---cCCCCEEEEEEecCcccCC---
Confidence 38999999997 7876655433 37899999999999988777766553 3589999999999998632
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHh
Q 025869 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKD 163 (247)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 163 (247)
.+.+++.++++++++++++.+|+++|++++++|..... ..+....++|++++++|.+
T Consensus 67 -----~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~~~~~------------------~~~~~~~~~n~~~~~~a~~ 123 (171)
T cd04502 67 -----RTPEEVLRDFRELVNRIRAKLPDTPIAIISIKPSPARW------------------ALRPKIRRFNALLKELAET 123 (171)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHCCCCcEEEEEecCCCcch------------------hhHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999876542210 1233567899999999985
Q ss_pred -cCCCeeechHHHHhcccc--cccccccccCCChhHHHHHHHHHHHHH
Q 025869 164 -LGVPFIDLWSKMQETEGW--QKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 164 -~~v~~vD~~~~~~~~~~~--~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
.++.|||++..+.+..+. ...+..||+|||++||++||+.+.+.|
T Consensus 124 ~~~v~~vD~~~~~~~~~~~~~~~~~~~DGlH~n~~Gy~~~a~~l~~~~ 171 (171)
T cd04502 124 RPNLTYIDVASPMLDADGKPRAELFQEDGLHLNDAGYALWRKVIKPAL 171 (171)
T ss_pred CCCeEEEECcHHHhCCCCCcChhhcCCCCCCCCHHHHHHHHHHHHhhC
Confidence 689999999988765431 245678999999999999999998764
No 14
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=99.96 E-value=2.3e-28 Score=186.99 Aligned_cols=172 Identities=25% Similarity=0.294 Sum_probs=135.6
Q ss_pred eEEEEcccccccccCC-------CcHHHHHHHHhc---ccCcEEecCCCCCchHHHHH-HhhhhcCCCCCCCCcEEEEEc
Q 025869 4 QIVLFGDSITQQSFGS-------AGWGAALADAYC---RKADVLLRGYGGYNTRWALF-LLHHIFPLDNSNPPVATTIFF 72 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~-------~~~~~~l~~~~~---~~~~v~n~g~~G~~t~~~~~-~l~~~~~~~~~~~~d~vii~~ 72 (247)
||+++|||+| .|++. .+|+..+.+.+. ..+.+.|.|++|.++..... .+..... .+||+|||++
T Consensus 1 ~i~~~GDSit-~G~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~N~g~~G~~~~~~~~~~~~~~~~----~~~d~vii~~ 75 (185)
T cd01832 1 RYVALGDSIT-EGVGDPVPDGGYRGWADRLAAALAAADPGIEYANLAVRGRRTAQILAEQLPAALA----LRPDLVTLLA 75 (185)
T ss_pred CeeEecchhh-cccCCCCCCCccccHHHHHHHHhcccCCCceEeeccCCcchHHHHHHHHHHHHHh----cCCCEEEEec
Confidence 6999999999 55543 699999999985 36899999999999885432 3333333 3899999999
Q ss_pred cCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCC-CcchhhhHhhhhhhhcccccchhhhhhHH
Q 025869 73 GANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV-DEDGRMEYAKSLYGEKAMKLPERTNEMTG 151 (247)
Q Consensus 73 G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (247)
|+||.... ..+.+++.++++.++++++. ++++|+++++++. ..... ....+....
T Consensus 76 G~ND~~~~-------~~~~~~~~~~~~~~i~~i~~--~~~~vil~~~~~~~~~~~~---------------~~~~~~~~~ 131 (185)
T cd01832 76 GGNDILRP-------GTDPDTYRADLEEAVRRLRA--AGARVVVFTIPDPAVLEPF---------------RRRVRARLA 131 (185)
T ss_pred cccccccC-------CCCHHHHHHHHHHHHHHHHh--CCCEEEEecCCCccccchh---------------HHHHHHHHH
Confidence 99999741 35789999999999999994 4888999998876 22211 112345678
Q ss_pred HHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHH
Q 025869 152 VYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 152 ~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
+++++++++|++.++.|+|++..+... ....+..||+|||++||++||+.+++
T Consensus 132 ~~n~~l~~~a~~~~v~~vd~~~~~~~~--~~~~~~~DgiHpn~~G~~~~A~~i~~ 184 (185)
T cd01832 132 AYNAVIRAVAARYGAVHVDLWEHPEFA--DPRLWASDRLHPSAAGHARLAALVLA 184 (185)
T ss_pred HHHHHHHHHHHHcCCEEEecccCcccC--CccccccCCCCCChhHHHHHHHHHhh
Confidence 999999999999999999999876421 12366789999999999999999875
No 15
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=99.96 E-value=4.9e-28 Score=189.22 Aligned_cols=179 Identities=21% Similarity=0.287 Sum_probs=135.9
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
.+|+++|||+| .|++..+ .....+.+. +++++|+|++|.++...+.++.... ....+||+|+|++|+||+...
T Consensus 33 ~~iv~lGDSit-~g~~~~~-~~~~~~~~~-~~~v~N~Gi~G~tt~~~l~r~~~~~--l~~~~pd~VvI~~G~ND~~~~-- 105 (214)
T cd01820 33 PDVVFIGDSIT-QNWEFTG-LEVWRELYA-PLHALNFGIGGDRTQNVLWRLENGE--LDGVNPKVVVLLIGTNNIGHT-- 105 (214)
T ss_pred CCEEEECchHh-hhhcccc-hHHHHHHcC-cCCeEeeeeccccHhHHHHHHhcCC--ccCCCCCEEEEEecccccCCC--
Confidence 48999999999 4554332 112223332 5789999999999998776665311 123479999999999999742
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHH
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAK 162 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 162 (247)
.+.+++.++++.+++.+++++|+++|++++++|..... ....+...++|+.+++.+.
T Consensus 106 ------~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~~-----------------~~~~~~~~~~n~~l~~~~~ 162 (214)
T cd01820 106 ------TTAEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQNP-----------------NPLRERNAQVNRLLAVRYD 162 (214)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCc-----------------hhHHHHHHHHHHHHHHHhc
Confidence 37899999999999999999999999999988765421 0133456788888888765
Q ss_pred -hcCCCeeechHHHHhccc-ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 163 -DLGVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 163 -~~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+.++.|||++..+.+..+ ....++.||+|||++||++||+.+.+.|++.
T Consensus 163 ~~~~v~~vd~~~~~~~~~g~~~~~~~~DGlHpn~~Gy~~~a~~l~~~l~~~ 213 (214)
T cd01820 163 GLPNVTFLDIDKGFVQSDGTISHHDMPDYLHLTAAGYRKWADALHPTLARL 213 (214)
T ss_pred CCCCEEEEeCchhhcccCCCcCHhhcCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 459999999998865433 2335578999999999999999999999763
No 16
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=99.96 E-value=1.1e-27 Score=181.95 Aligned_cols=168 Identities=24% Similarity=0.374 Sum_probs=133.4
Q ss_pred eEEEEcccccccccC---CCcHHHHHHHHh---cccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 4 QIVLFGDSITQQSFG---SAGWGAALADAY---CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~---~~~~~~~l~~~~---~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
+|+++|||++ .|++ ..+|+..+.+.+ ..++.++|.|++|.++.....++.+.... .+||+|+|++|+||.
T Consensus 2 ~i~~~GDSit-~G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~---~~pd~v~i~~G~ND~ 77 (177)
T cd01822 2 TILALGDSLT-AGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLAQ---HKPDLVILELGGNDG 77 (177)
T ss_pred eEEEEccccc-cCcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHHh---cCCCEEEEeccCccc
Confidence 7999999999 5554 468999998887 34588999999999999887777765542 589999999999998
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHH
Q 025869 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQC 157 (247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (247)
.. ..+.+++.++++++++.++++ ++++++++++..... .......+++++
T Consensus 78 ~~--------~~~~~~~~~~l~~li~~~~~~--~~~vil~~~~~~~~~--------------------~~~~~~~~~~~~ 127 (177)
T cd01822 78 LR--------GIPPDQTRANLRQMIETAQAR--GAPVLLVGMQAPPNY--------------------GPRYTRRFAAIY 127 (177)
T ss_pred cc--------CCCHHHHHHHHHHHHHHHHHC--CCeEEEEecCCCCcc--------------------chHHHHHHHHHH
Confidence 63 257899999999999999998 677888876421100 012356899999
Q ss_pred HHHHHhcCCCeeech-HHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 158 IETAKDLGVPFIDLW-SKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 158 ~~~a~~~~v~~vD~~-~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
+++|+++++.|+|.+ ..+... ...+..||+|||++||++||+.+++.|
T Consensus 128 ~~~a~~~~~~~~d~~~~~~~~~---~~~~~~DgvHpn~~G~~~~a~~i~~~i 176 (177)
T cd01822 128 PELAEEYGVPLVPFFLEGVAGD---PELMQSDGIHPNAEGQPIIAENVWPAL 176 (177)
T ss_pred HHHHHHcCCcEechHHhhhhhC---hhhhCCCCCCcCHHHHHHHHHHHHHhh
Confidence 999999999999975 222222 234789999999999999999999887
No 17
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.96 E-value=4.5e-28 Score=186.10 Aligned_cols=182 Identities=24% Similarity=0.293 Sum_probs=139.6
Q ss_pred ceEEEEcccccccccCCCcHHHHHH----HHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALA----DAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~----~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
.+|+++|||+++ |. +|...+. ..+. ..+.++|.|++|.++..+...+.+.. ...+||+|+|++|+||+
T Consensus 2 ~~v~~~GDSit~-g~---~~~~~~~~~l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~---~~~~~d~v~l~~G~ND~ 74 (191)
T cd01834 2 DRIVFIGNSITD-RG---GYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDV---LPAKPDVVSIMFGINDS 74 (191)
T ss_pred CEEEEeCCChhh-cc---ccHHHHHHHHHHhCCCCCcEEEEcccCccchhhhhhhhhccc---ccCCCCEEEEEeecchH
Confidence 589999999995 43 5554444 4432 35889999999999987664443322 34589999999999999
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHH
Q 025869 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQC 157 (247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (247)
..... ...+++++..+|+++++.+++..|+++|+++++++........ ......+.....|++.+
T Consensus 75 ~~~~~----~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~-----------~~~~~~~~~~~~~n~~l 139 (191)
T cd01834 75 FRGFD----DPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPL-----------PDGAEYNANLAAYADAV 139 (191)
T ss_pred hhccc----ccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCC-----------CChHHHHHHHHHHHHHH
Confidence 85310 1357899999999999999977789999999987754332100 11234667788999999
Q ss_pred HHHHHhcCCCeeechHHHHhcccc--cccccccccCCChhHHHHHHHHHHH
Q 025869 158 IETAKDLGVPFIDLWSKMQETEGW--QKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 158 ~~~a~~~~v~~vD~~~~~~~~~~~--~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
+++|++.++.|||+++.+...... ...+..||+|||++||++||+.+++
T Consensus 140 ~~~a~~~~~~~iD~~~~~~~~~~~~~~~~~~~D~~Hpn~~G~~~~a~~~~~ 190 (191)
T cd01834 140 RELAAENGVAFVDLFTPMKEAFQKAGEAVLTVDGVHPNEAGHRALARLWLE 190 (191)
T ss_pred HHHHHHcCCeEEecHHHHHHHHHhCCCccccCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999875432 4567899999999999999999875
No 18
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.95 E-value=1.5e-27 Score=181.09 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=128.9
Q ss_pred eEEEEcccccccccC----CCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 4 QIVLFGDSITQQSFG----SAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~----~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
||+++|||+| .|++ ..+|+..+++.++ ++++|+|++|.++... .+.+... ..+||+|+|++|+||...
T Consensus 1 ~iv~~GDSit-~G~g~~~~~~~~~~~~~~~~~--~~v~N~g~~G~~~~~~--~~~~~~~---~~~pd~vii~~G~ND~~~ 72 (177)
T cd01844 1 PWVFYGTSIS-QGACASRPGMAWTAILARRLG--LEVINLGFSGNARLEP--EVAELLR---DVPADLYIIDCGPNIVGA 72 (177)
T ss_pred CEEEEeCchh-cCcCCCCCCCcHHHHHHHHhC--CCeEEeeecccccchH--HHHHHHH---hcCCCEEEEEeccCCCcc
Confidence 6999999999 5654 3599999999887 8899999999866432 2233332 248999999999999862
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHH
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIE 159 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (247)
..++.++++.+++.+++.+|+++|++++++|........ ....+.++....+++.+++
T Consensus 73 -----------~~~~~~~~~~~i~~i~~~~p~~~iil~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 130 (177)
T cd01844 73 -----------EAMVRERLGPLVKGLRETHPDTPILLVSPRYCPDAELTP-----------GRGKLTLAVRRALREAFEK 130 (177)
T ss_pred -----------HHHHHHHHHHHHHHHHHHCcCCCEEEEecCCCCccccCc-----------chhHHHHHHHHHHHHHHHH
Confidence 128999999999999999999999999988764321100 1122355566677777776
Q ss_pred HHHh--cCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 160 TAKD--LGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 160 ~a~~--~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
++.+ .++.|||.+..+... ..++.||+|||++||++||+.+++.|
T Consensus 131 ~~~~~~~~v~~id~~~~~~~~----~~~~~DglHpn~~Gy~~~a~~l~~~~ 177 (177)
T cd01844 131 LRADGVPNLYYLDGEELLGPD----GEALVDGIHPTDLGHMRYADRFEPVL 177 (177)
T ss_pred HHhcCCCCEEEecchhhcCCC----CCCCCCCCCCCHHHHHHHHHHHhhcC
Confidence 6543 368899998766543 35688999999999999999998764
No 19
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=99.95 E-value=1.3e-27 Score=185.53 Aligned_cols=187 Identities=20% Similarity=0.256 Sum_probs=135.2
Q ss_pred eEEEEcccccccccCC---Cc-HHHHHHHHh----cccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc
Q 025869 4 QIVLFGDSITQQSFGS---AG-WGAALADAY----CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN 75 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~---~~-~~~~l~~~~----~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N 75 (247)
+|+++|||++ .|++. .+ |...+...+ ...+++.|+|++|.++.....++++........+||+|+|++|+|
T Consensus 1 ~i~~~GDSit-~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~~G~t~~~~~~r~~~~~~~~~~~~~d~V~i~~G~N 79 (204)
T cd04506 1 KIVALGDSLT-EGVGDETGKGGYVGRLDKLIETKTVKKVTVQNFGVSGDRSDQLLKRLKTKKVQKELKKADVITITIGGN 79 (204)
T ss_pred CEeEEecccc-CccCCCCCCCChHHHHHHHHhhhcCCceEEEeecccchhHHHHHHHHhcchhhhhcccCCEEEEEecch
Confidence 5899999999 56542 34 444554444 345889999999999998877655432110134899999999999
Q ss_pred cccccCCCC------CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC-CCCcchhhhHhhhhhhhcccccchhhhh
Q 025869 76 DAALFGRTS------ERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP-PVDEDGRMEYAKSLYGEKAMKLPERTNE 148 (247)
Q Consensus 76 D~~~~~~~~------~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (247)
|+....... .....+.++|+++|+.+++.+++++|+++|++++++ |..... ......+.
T Consensus 80 D~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~p~~~~~--------------~~~~~~~~ 145 (204)
T cd04506 80 DLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGLYNPFYVYF--------------PNITEIND 145 (204)
T ss_pred hHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcccccc--------------chHHHHHH
Confidence 986421000 000123567999999999999999999999998753 322110 01112456
Q ss_pred hHHHHHHHHHHHHHhcC-CCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHH
Q 025869 149 MTGVYARQCIETAKDLG-VPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~-v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
.++.|+++++++|++++ +.|||+++.+.... ....+..||+|||++||++||+.+++
T Consensus 146 ~~~~~n~~~~~~a~~~~~v~~vd~~~~~~~~~-~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 203 (204)
T cd04506 146 IVNDWNEASQKLASQYKNAYFVPIFDLFSDGQ-NKYLLTSDHFHPNDKGYQLIADRVFK 203 (204)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEehHHhhcCCc-ccccccccCcCCCHHHHHHHHHHHHh
Confidence 77899999999999987 99999999888653 23366789999999999999999875
No 20
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.95 E-value=7.9e-27 Score=181.12 Aligned_cols=181 Identities=20% Similarity=0.210 Sum_probs=127.2
Q ss_pred eEEEEcccccccccC-----CCcHHHHHHHHh-----cccCcEEecCCCCCchH------HHHHHhhhhcCCCCCCCCcE
Q 025869 4 QIVLFGDSITQQSFG-----SAGWGAALADAY-----CRKADVLLRGYGGYNTR------WALFLLHHIFPLDNSNPPVA 67 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~-----~~~~~~~l~~~~-----~~~~~v~n~g~~G~~t~------~~~~~l~~~~~~~~~~~~d~ 67 (247)
+|+|||||+|+ |++ ..+|+..+++.+ ..+++++|+|++|.++. ..+.++.+..-. ..+||+
T Consensus 1 ~iv~~GDSiT~-G~~~~~~~~~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~--~~~p~~ 77 (204)
T cd01830 1 SVVALGDSITD-GRGSTPDANNRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS--QPGVRT 77 (204)
T ss_pred CEEEEeccccc-CCCCCCCCCCcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc--CCCCCE
Confidence 58999999994 543 258998887655 34688999999999873 566666543221 236999
Q ss_pred EEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhh
Q 025869 68 TTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTN 147 (247)
Q Consensus 68 vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (247)
|+|++|+||+............+.+++.++|+.+++.+++. ++++++++++|+....... ....
T Consensus 78 vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~--~~~vil~t~~P~~~~~~~~--------------~~~~ 141 (204)
T cd01830 78 VIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHAR--GIKVIGATITPFEGSGYYT--------------PARE 141 (204)
T ss_pred EEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHC--CCeEEEecCCCCCCCCCCC--------------HHHH
Confidence 99999999997543222234568899999999999999998 6789998888865422110 1122
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeechHHHHhccc---c-cccccccccCCChhHHHHHHHHHH
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDLWSKMQETEG---W-QKKFLSDGLHLTEEGNAVVHKEVV 205 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~---~-~~~~~~Dg~Hp~~~G~~~iA~~l~ 205 (247)
....++++.+++.+. +. .+||++..+.+... . ..++..||+|||++||++||+.+.
T Consensus 142 ~~~~~~n~~~~~~~~-~~-~~vD~~~~~~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~A~~i~ 201 (204)
T cd01830 142 ATRQAVNEWIRTSGA-FD-AVVDFDAALRDPADPSRLRPAYDSGDHLHPNDAGYQAMADAVD 201 (204)
T ss_pred HHHHHHHHHHHccCC-CC-eeeEhHHhhcCCCCchhcccccCCCCCCCCCHHHHHHHHHhcC
Confidence 233456666655332 22 48999988876432 1 234467999999999999999764
No 21
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.95 E-value=1.4e-26 Score=172.49 Aligned_cols=151 Identities=21% Similarity=0.277 Sum_probs=126.3
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~ 83 (247)
+|+++|||++. | ++.|.|++|+++.....++.+... ..+||+|+|++|+||....
T Consensus 2 ~~~~~Gds~~~-g------------------~~~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ND~~~~--- 56 (157)
T cd01833 2 RIMPLGDSITW-G------------------DKDHEGHSGYLIDQIAAAAADWVL---AAKPDVVLLHLGTNDLVLN--- 56 (157)
T ss_pred ceeecCCceee-c------------------CCCCCCCCCccHHHHHHHhhhccc---cCCCCEEEEeccCcccccC---
Confidence 79999999995 2 688999999999988877765554 4699999999999999743
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHh
Q 025869 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKD 163 (247)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 163 (247)
.+.+++.++++++++.+++++|+++|++++++|..... .+.....||+.++++|++
T Consensus 57 -----~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~-------------------~~~~~~~~n~~l~~~~~~ 112 (157)
T cd01833 57 -----RDPDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDAS-------------------GNARIAEYNAAIPGVVAD 112 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc-------------------hhHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999887753321 134567899999999987
Q ss_pred -----cCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 164 -----LGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 164 -----~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
.++.|+|++..+.. ..+..||+|||++||+.||+.+++.|
T Consensus 113 ~~~~~~~v~~vd~~~~~~~-----~~~~~Dg~Hpn~~Gy~~~a~~~~~~~ 157 (157)
T cd01833 113 LRTAGSPVVLVDMSTGYTT-----ADDLYDGLHPNDQGYKKMADAWYEAL 157 (157)
T ss_pred HhcCCCCEEEEecCCCCCC-----cccccCCCCCchHHHHHHHHHHHhhC
Confidence 46889999987754 35789999999999999999998764
No 22
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.93 E-value=1.2e-24 Score=168.36 Aligned_cols=176 Identities=19% Similarity=0.255 Sum_probs=126.7
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc--ccCcEEecCCCCCchH-----HHHHHhhhhcCCCCCCCCcEEEEEccCcc
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRGYGGYNTR-----WALFLLHHIFPLDNSNPPVATTIFFGAND 76 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~--~~~~v~n~g~~G~~t~-----~~~~~l~~~~~~~~~~~~d~vii~~G~ND 76 (247)
||+++|||+++ +|...+.+.+. ..+.+.|.+++|.+.. .....+...+ ...+||+|+|++|+||
T Consensus 1 ril~iGDS~~~------g~~~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l---~~~~pd~vii~~G~ND 71 (200)
T cd01829 1 RVLVIGDSLAQ------GLAPGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELI---AEEKPDVVVVFLGAND 71 (200)
T ss_pred CEEEEechHHH------HHHHHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHH---hcCCCCEEEEEecCCC
Confidence 68999999995 45555555553 3478999999876421 1112233322 2348999999999999
Q ss_pred ccccCCCCCCC----CCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHH
Q 025869 77 AALFGRTSERQ----HVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGV 152 (247)
Q Consensus 77 ~~~~~~~~~~~----~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (247)
+......+... ....+.|.++++.+++++++. +++|+++++||..... .++....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~--~~~vili~~pp~~~~~-------------------~~~~~~~ 130 (200)
T cd01829 72 RQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAK--GVPVIWVGLPAMRSPK-------------------LSADMVY 130 (200)
T ss_pred CccccCCCceeecCChhHHHHHHHHHHHHHHHHHhC--CCcEEEEcCCCCCChh-------------------HhHHHHH
Confidence 86432111000 111467889999999999965 7889999998864321 3346678
Q ss_pred HHHHHHHHHHhcCCCeeechHHHHhccccc------------ccccccccCCChhHHHHHHHHHHHHHH
Q 025869 153 YARQCIETAKDLGVPFIDLWSKMQETEGWQ------------KKFLSDGLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 153 ~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~------------~~~~~Dg~Hp~~~G~~~iA~~l~~~l~ 209 (247)
++++++++|++.++.|+|+++.+++..+.. ..+..||+|||++||+.||+.+.+.|+
T Consensus 131 ~~~~~~~~a~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DgvH~~~~G~~~~a~~i~~~l~ 199 (200)
T cd01829 131 LNSLYREEVAKAGGEFVDVWDGFVDENGRFTYSGTDVNGKKVRLRTNDGIHFTAAGGRKLAFYVEKLIR 199 (200)
T ss_pred HHHHHHHHHHHcCCEEEEhhHhhcCCCCCeeeeccCCCCcEEEeecCCCceECHHHHHHHHHHHHHHhh
Confidence 999999999999999999999997654321 234679999999999999999999886
No 23
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=99.92 E-value=8.2e-24 Score=159.40 Aligned_cols=150 Identities=25% Similarity=0.325 Sum_probs=113.4
Q ss_pred eEEEEcccccccccCC----------------CcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcE
Q 025869 4 QIVLFGDSITQQSFGS----------------AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVA 67 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~----------------~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~ 67 (247)
+|++||||+| .|++. .+|+..+++.++ ..+.+.+++|.+ ||+
T Consensus 1 ~i~~iGDSit-~G~~~~~~~~~~~~~~~~~~~~~~~~~la~~l~--~~~~~~~~~g~~-------------------pd~ 58 (169)
T cd01831 1 KIEFIGDSIT-CGYGVTGKSRCDFSAATEDPSLSYAALLARALN--AEYSIIAYSGIG-------------------PDL 58 (169)
T ss_pred CEEEEecccc-ccCccCCCCCCCCcccccchhhhHHHHHHHHhC--CcEEEEEecCCC-------------------CCE
Confidence 6899999999 56553 478999999997 456777888865 899
Q ss_pred EEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhh
Q 025869 68 TTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTN 147 (247)
Q Consensus 68 vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (247)
|+|++|+||..... ..+.+++..+++++++.+++++|.++|+++.++...... ..+
T Consensus 59 vii~~G~ND~~~~~------~~~~~~~~~~~~~li~~i~~~~p~~~i~~~~~~~~~~~~------------------~~~ 114 (169)
T cd01831 59 VVINLGTNDFSTGN------NPPGEDFTNAYVEFIEELRKRYPDAPIVLMLGPMLFGPY------------------GTE 114 (169)
T ss_pred EEEECCcCCCCCCC------CCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCcccccc------------------ccH
Confidence 99999999996421 146889999999999999999999988888765432211 002
Q ss_pred hhHHHHHHHHHHHHHhc---CCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHH
Q 025869 148 EMTGVYARQCIETAKDL---GVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~---~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~ 209 (247)
.+.+.+++++++. ++.|+|+...+. ..++.||+|||++||++||+.+++.|+
T Consensus 115 ----~~~~~~~~~~~~~~~~~v~~id~~~~~~------~~~~~DgiHPn~~G~~~iA~~l~~~i~ 169 (169)
T cd01831 115 ----EEIKRVAEAFKDQKSKKVHYFDTPGILQ------HNDIGCDWHPTVAGHQKIAKHLLPAIK 169 (169)
T ss_pred ----HHHHHHHHHHHhcCCceEEEEecccccC------CCCcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 2333444444444 599999976443 134689999999999999999999874
No 24
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=99.91 E-value=5.5e-24 Score=171.17 Aligned_cols=202 Identities=17% Similarity=0.151 Sum_probs=141.3
Q ss_pred eEEEEcccccccccCC---------------CcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhh---hcCCCCCCC
Q 025869 4 QIVLFGDSITQQSFGS---------------AGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHH---IFPLDNSNP 64 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~---------------~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~---~~~~~~~~~ 64 (247)
++++||||++ .|++. .+|+..+++.+.. .+++.|.|++|.++......... .+......+
T Consensus 2 ~~v~iGDS~~-~G~g~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~n~a~sGa~~~~~~~~~~~~~~~~~~~l~~~ 80 (259)
T cd01823 2 RYVALGDSYA-AGPGAGPLDDGPDDGCRRSSNSYPTLLARALGDETLSFTDVACSGATTTDGIEPQQGGIAPQAGALDPD 80 (259)
T ss_pred CEEEecchhh-cCCCCCcccCCCCCCCccCCccHHHHHHHHcCCCCceeeeeeecCcccccccccccCCCchhhcccCCC
Confidence 7899999999 66552 2699999999874 37899999999999866532110 111113447
Q ss_pred CcEEEEEccCccccccCCC-------------------CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcc
Q 025869 65 PVATTIFFGANDAALFGRT-------------------SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED 125 (247)
Q Consensus 65 ~d~vii~~G~ND~~~~~~~-------------------~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~ 125 (247)
+|+|+|.+|+||+...... ........++|.++|..+++.+++..|+++|+++++|++...
T Consensus 81 ~dlV~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~~~ 160 (259)
T cd01823 81 TDLVTITIGGNDLGFADVVKACILTGGGSSLAQEKGAADGARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPRLFPP 160 (259)
T ss_pred CCEEEEEECccccchHHHHHHHhhccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccccccC
Confidence 9999999999998643110 001123467899999999999999999999999998765432
Q ss_pred hhhhHhhhh--hhhcccccchhhhhhHHHHHHHHHHHHHhcC---CCeeechHHHHhccc------------cccccccc
Q 025869 126 GRMEYAKSL--YGEKAMKLPERTNEMTGVYARQCIETAKDLG---VPFIDLWSKMQETEG------------WQKKFLSD 188 (247)
Q Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---v~~vD~~~~~~~~~~------------~~~~~~~D 188 (247)
.......+. ............++...++|++++++|.+.+ +.|||++..+..+.. .......|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~a~~~~~~~v~fvD~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d 240 (259)
T cd01823 161 DGGDCDKSCSPGTPLTPADRPELNQLVDKLNALIRRAAADAGDYKVRFVDTDAPFAGHRACSPDPWSRSVLDLLPTRQGK 240 (259)
T ss_pred CCCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCceEEEEECCCCcCCCccccCCCccccccCCCCCCCcc
Confidence 110000000 0000011223466788899999999999999 999999998875421 11234679
Q ss_pred ccCCChhHHHHHHHHHHH
Q 025869 189 GLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 189 g~Hp~~~G~~~iA~~l~~ 206 (247)
++|||.+||++||+.+..
T Consensus 241 ~~HPn~~G~~~~A~~i~~ 258 (259)
T cd01823 241 PFHPNAAGHRAIADLIVD 258 (259)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999999865
No 25
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=99.91 E-value=4.2e-24 Score=161.61 Aligned_cols=175 Identities=30% Similarity=0.474 Sum_probs=131.2
Q ss_pred EEEcccccccccC---CCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 6 VLFGDSITQQSFG---SAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 6 ~~~GDS~~~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
|++|||++ .|.+ ..+|+..++...+..+.+.|.|++|.++......+.+........+||+|+|++|+||....
T Consensus 1 v~~GDS~t-~g~~~~~~~~~~~~l~~~~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~~~~~~~d~vvi~~G~ND~~~~-- 77 (179)
T PF13472_consen 1 VFLGDSIT-AGYGAPNNGSYPDRLAERPGRGIEVYNLGVSGATSSDFLARLQRDVLRFKDPKPDLVVISFGTNDVLNG-- 77 (179)
T ss_dssp EEEESHHH-HTTTTSSCTSHHHHHHHHHTCCEEEEEEE-TT-BHHHHHHHHHHHCHHHCGTTCSEEEEE--HHHHCTC--
T ss_pred CEEccccc-cCCCCCCCCCHHHHHHHhhCCCcEEEEEeecCccHhHHHHHHHHHHhhhccCCCCEEEEEccccccccc--
Confidence 69999999 4544 36999999998666789999999999999887666654310124589999999999999853
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHH
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAK 162 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 162 (247)
.....+.+++..+|+++++.++..+ +|++++++|......... ..........++++++++|+
T Consensus 78 --~~~~~~~~~~~~~l~~~i~~~~~~~---~vi~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~a~ 140 (179)
T PF13472_consen 78 --DENDTSPEQYEQNLRRIIEQLRPHG---PVILVSPPPRGPDPRDPK------------QDYLNRRIDRYNQAIRELAK 140 (179)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHTTS---EEEEEE-SCSSSSTTTTH------------TTCHHHHHHHHHHHHHHHHH
T ss_pred --ccccccHHHHHHHHHHHHHhhcccC---cEEEecCCCccccccccc------------chhhhhhHHHHHHHHHHHHH
Confidence 1123467889999999999998874 789998887765532110 12345677899999999999
Q ss_pred hcCCCeeechHHHHhccc-ccccccccccCCChhHHHHH
Q 025869 163 DLGVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVV 200 (247)
Q Consensus 163 ~~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~i 200 (247)
++++.|+|+...+.+... ....++.|++|||++||++|
T Consensus 141 ~~~~~~id~~~~~~~~~~~~~~~~~~D~~Hp~~~G~~~~ 179 (179)
T PF13472_consen 141 KYGVPFIDLFDAFDDHDGWFPKYYFSDGVHPNPAGHQLI 179 (179)
T ss_dssp HCTEEEEEHHHHHBTTTSCBHTCTBTTSSSBBHHHHHHH
T ss_pred HcCCEEEECHHHHccccccchhhcCCCCCCcCHHHhCcC
Confidence 999999999999886543 23567899999999999987
No 26
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=99.91 E-value=1.4e-23 Score=154.86 Aligned_cols=149 Identities=19% Similarity=0.220 Sum_probs=117.4
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~ 83 (247)
.|+++|||++. ++...+.+.++.- ++| |.+|.++....++++++... ...+|+|||++|+||..
T Consensus 1 ~v~~~GDSv~~------~~~~~~~~~~p~~--~i~-a~~g~~~~~~~~~l~~~~~~--~~~~d~vvi~lGtNd~~----- 64 (150)
T cd01840 1 DITAIGDSVML------DSSPALQEIFPNI--QID-AKVGRQMSEAPDLIRQLKDS--GKLRKTVVIGLGTNGPF----- 64 (150)
T ss_pred CeeEEeehHHH------chHHHHHHHCCCC--EEE-eeecccHHHHHHHHHHHHHc--CCCCCeEEEEecCCCCC-----
Confidence 37899999996 6788889988732 455 66667788888888877653 45789999999999984
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHh
Q 025869 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKD 163 (247)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 163 (247)
+.++|+++++.+. ++++|+++++++ .. .+..++|+.++++|++
T Consensus 65 ----------~~~nl~~ii~~~~---~~~~ivlv~~~~--~~----------------------~~~~~~n~~~~~~a~~ 107 (150)
T cd01840 65 ----------TKDQLDELLDALG---PDRQVYLVNPHV--PR----------------------PWEPDVNAYLLDAAKK 107 (150)
T ss_pred ----------CHHHHHHHHHHcC---CCCEEEEEECCC--Cc----------------------chHHHHHHHHHHHHHH
Confidence 2678899999884 467899988852 00 1234788999999999
Q ss_pred c-CCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 164 L-GVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 164 ~-~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
+ ++.++|++..+..+. .++..||+|||++||++||+.+++.|
T Consensus 108 ~~~v~~id~~~~~~~~~---~~~~~DgiHpn~~G~~~~a~~i~~ai 150 (150)
T cd01840 108 YKNVTIIDWYKAAKGHP---DWFYGDGVHPNPAGAKLYAALIAKAI 150 (150)
T ss_pred CCCcEEecHHHHhcccc---hhhcCCCCCCChhhHHHHHHHHHHhC
Confidence 8 999999988776433 35678999999999999999998764
No 27
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=99.88 E-value=2.6e-22 Score=148.41 Aligned_cols=173 Identities=20% Similarity=0.225 Sum_probs=84.8
Q ss_pred CceEEEEcccccccccC---CCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccc
Q 025869 2 RPQIVLFGDSITQQSFG---SAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~ 78 (247)
+++|+++|+||++++.. ...|+..+++.++ ++++|+|++|..--+ ....+.+.. .++|++++.+|.| .
T Consensus 1 ~k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l~--~~~iNLGfsG~~~le-~~~a~~ia~----~~a~~~~ld~~~N--~ 71 (178)
T PF14606_consen 1 EKRWVAYGSSITQGACASRPGMAYPAILARRLG--LDVINLGFSGNGKLE-PEVADLIAE----IDADLIVLDCGPN--M 71 (178)
T ss_dssp --EEEEEE-TT-TTTT-SSGGGSHHHHHHHHHT---EEEEEE-TCCCS---HHHHHHHHH----S--SEEEEEESHH--C
T ss_pred CCeEEEECChhhcCCCCCCCcccHHHHHHHHcC--CCeEeeeecCccccC-HHHHHHHhc----CCCCEEEEEeecC--C
Confidence 46899999999965432 4699999999998 889999999965432 122222222 2679999999999 2
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHH
Q 025869 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCI 158 (247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (247)
+.+++.+++..+++.+|+..|.++|+++++.+........ .......+..+.+.++++
T Consensus 72 -----------~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~-----------~~~~~~~~~~~~~r~~v~ 129 (178)
T PF14606_consen 72 -----------SPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN-----------SRGETVEEFREALREAVE 129 (178)
T ss_dssp -----------CTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS-------------TTS--HHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc-----------hHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999986643332111 111122223333333344
Q ss_pred HHHH--hcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHH
Q 025869 159 ETAK--DLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 159 ~~a~--~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~ 209 (247)
++.+ ..++.|++-.+.+.+.. +.+.||+|||+.|+..||+.+.+.|+
T Consensus 130 ~l~~~g~~nl~~l~g~~llg~d~----e~tvDgvHP~DlG~~~~a~~l~~~ir 178 (178)
T PF14606_consen 130 QLRKEGDKNLYYLDGEELLGDDH----EATVDGVHPNDLGMMRMADALEPVIR 178 (178)
T ss_dssp HHHHTT-TTEEEE-HHHCS----------------------------------
T ss_pred HHHHcCCCcEEEeCchhhcCccc----ccccccccccccccccccccccccCC
Confidence 4322 24678888877665543 67899999999999999999998774
No 28
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.86 E-value=1.2e-20 Score=142.78 Aligned_cols=176 Identities=24% Similarity=0.282 Sum_probs=130.1
Q ss_pred EEEEcccccccccCCC---cHHH---HHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccc
Q 025869 5 IVLFGDSITQQSFGSA---GWGA---ALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (247)
Q Consensus 5 i~~~GDS~~~~g~~~~---~~~~---~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~ 78 (247)
|+++|||++.+..... .+.. .........+.+.|.|.+|.++........ ........+||+|++.+|.||..
T Consensus 1 i~~~GDS~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~g~~~~~~~~~~~-~~~~~~~~~~d~vil~~G~ND~~ 79 (187)
T cd00229 1 ILVIGDSITAGYGASSGSTFYSLLLYLLLLAGGPGVEVINLGVSGATTADALRRLG-LRLALLKDKPDLVIIELGTNDLG 79 (187)
T ss_pred CeeeccccccccCCCCCCCCccchhhHHHhccCCCceEEeecccchhHHHHHhhcc-hhhhhccCCCCEEEEEecccccc
Confidence 6899999995332211 1111 111222345789999999999887655442 01111345899999999999997
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHH
Q 025869 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCI 158 (247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (247)
... ..+..++.++++++++.+++..++++|+++++++...... ..+.....++++++
T Consensus 80 ~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~ 136 (187)
T cd00229 80 RGG------DTSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREG-----------------LLGRALPRYNEAIK 136 (187)
T ss_pred ccc------ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCch-----------------hhHHHHHHHHHHHH
Confidence 421 2367889999999999999988899999999988765431 13345678999999
Q ss_pred HHHHhcC----CCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHH
Q 025869 159 ETAKDLG----VPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 159 ~~a~~~~----v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
+++++.+ +.++|++..+... ....+..||+|||++||+++|+.+++
T Consensus 137 ~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~Dg~H~~~~G~~~~a~~i~~ 186 (187)
T cd00229 137 AVAAENPAPSGVDLVDLAALLGDE--DKSLYSPDGIHPNPAGHKLIAEALAS 186 (187)
T ss_pred HHHHHcCCCcceEEEEhhhhhCCC--ccccccCCCCCCchhhHHHHHHHHhc
Confidence 9999998 8999999888764 23467899999999999999999875
No 29
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.86 E-value=1.2e-21 Score=154.69 Aligned_cols=195 Identities=25% Similarity=0.386 Sum_probs=127.1
Q ss_pred EEEEccccccc--ccCCCcHHHHHHHHh---------cccCcEEecCCCCCchH-----------HHHHHhhhhcCCCCC
Q 025869 5 IVLFGDSITQQ--SFGSAGWGAALADAY---------CRKADVLLRGYGGYNTR-----------WALFLLHHIFPLDNS 62 (247)
Q Consensus 5 i~~~GDS~~~~--g~~~~~~~~~l~~~~---------~~~~~v~n~g~~G~~t~-----------~~~~~l~~~~~~~~~ 62 (247)
|++||||++++ .....+|...+...+ ..++.+.|.|++|+++. ...+...........
T Consensus 1 i~~fGDS~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~a~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (234)
T PF00657_consen 1 IVVFGDSLTDGGGDSNGGGWPEGLANNLSSCLGANQRNSGVDVSNYAISGATSDGDLYNLWAQVQNISQQISRLLDSKSF 80 (234)
T ss_dssp EEEEESHHHHTTTSSTTCTHHHHHHHHCHHCCHHHHHCTTEEEEEEE-TT--CC-HGGCCCCTCHHHHHHHHHHHHHHHH
T ss_pred CEEEeehhcccCCCCCCcchhhhHHHHHhhccccccCCCCCCeeccccCCCccccccchhhHHHHHHHHHhhcccccccc
Confidence 78999999975 233579999998877 35578999999999842 111111111111113
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC----eEEEEcCCCCCcchhhhHhhhhhhhc
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM----LVVLITPPPVDEDGRMEYAKSLYGEK 138 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~----~ivl~~~~p~~~~~~~~~~~~~~~~~ 138 (247)
.++++|+|++|+||++.. ..........+.+.+++..+++.++..++.. .++++..+|......... ....
T Consensus 81 ~~~~lv~i~~G~ND~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 155 (234)
T PF00657_consen 81 YDPDLVVIWIGTNDYFNN-RDSSDNNTSVEEFVENLRNAIKRLRSNGARLIIVANIVVINLPPIGCLPAWSS----NNKD 155 (234)
T ss_dssp HTTSEEEEE-SHHHHSSC-CSCSTTHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEHHC-GGGSTTHHH----THTT
T ss_pred CCcceEEEecccCcchhh-cccchhhhhHhhHhhhhhhhhhHHhccCCcccccccccccccccccccccccc----cccc
Confidence 379999999999998631 1111233567889999999999999664331 344444444432111110 1111
Q ss_pred ccccchhhhhhHHHHHHHHHHHH--------HhcCCCeeechHHHHhcccc-----cccccccccCCChhHHHHHHHHH
Q 025869 139 AMKLPERTNEMTGVYARQCIETA--------KDLGVPFIDLWSKMQETEGW-----QKKFLSDGLHLTEEGNAVVHKEV 204 (247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~a--------~~~~v~~vD~~~~~~~~~~~-----~~~~~~Dg~Hp~~~G~~~iA~~l 204 (247)
...+....++....||+.+++.+ ...++.++|++..+....+. ..+++.|++|||++||+++|+.|
T Consensus 156 ~~~~~~~~~~~~~~~n~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~D~~Hpt~~g~~~iA~~i 234 (234)
T PF00657_consen 156 SASCIERLNAIVAAFNSALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPENDKYMFWDGVHPTEKGHKIIAEYI 234 (234)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGGHHHCBBSSSSSB-HHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCcccceeccCCCcCCCHHHHHHHHcCC
Confidence 23455677888999999999999 67889999999988765221 24589999999999999999975
No 30
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=99.84 E-value=6.7e-20 Score=148.32 Aligned_cols=175 Identities=15% Similarity=0.087 Sum_probs=116.8
Q ss_pred CcEEecCCCCCchHHHHHHhh----hhcCC---CCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHH
Q 025869 34 ADVLLRGYGGYNTRWALFLLH----HIFPL---DNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLK 106 (247)
Q Consensus 34 ~~v~n~g~~G~~t~~~~~~l~----~~~~~---~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 106 (247)
..+.|.|++|.++.......+ ++... ....++++|+|++|+||++... ... ...+.++|+++|+++++.++
T Consensus 82 ~~~~N~av~Ga~s~dL~~qa~~lv~r~~~~~~i~~~~dwklVtI~IG~ND~c~~~-~~~-~~~~~~~~~~nL~~~L~~Lr 159 (288)
T cd01824 82 DSGFNVAEPGAKSEDLPQQARLLVRRMKKDPRVDFKNDWKLITIFIGGNDLCSLC-EDA-NPGSPQTFVKNLRKALDILR 159 (288)
T ss_pred ccceeecccCcchhhHHHHHHHHHHHHhhccccccccCCcEEEEEecchhHhhhc-ccc-cCcCHHHHHHHHHHHHHHHH
Confidence 357799999999987663222 22211 1234789999999999998531 111 22678999999999999999
Q ss_pred HhCCCCeEEEEcCCCCCcc------------hhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhc-------CCC
Q 025869 107 RLSPIMLVVLITPPPVDED------------GRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDL-------GVP 167 (247)
Q Consensus 107 ~~~p~~~ivl~~~~p~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~v~ 167 (247)
+..|.+.|++++++..... .....+.|+.+.. .....++.+...+|+++++++|.+. ++.
T Consensus 160 ~~~P~~~V~lv~~~~~~~l~~~~~~p~~c~~~~~~~C~c~~~~~-~~~~~~~~~~~~~y~~~~~eia~~~~~~~~~f~vv 238 (288)
T cd01824 160 DEVPRAFVNLVGLLNVASLRSLTKKPLQCETLLAPECPCLLGPT-ENSYQDLKKFYKEYQNEVEEIVESGEFDREDFAVV 238 (288)
T ss_pred HhCCCcEEEEEcCCCcHHHHHhccCCccccccCCCcCCCcCCCC-cchHHHHHHHHHHHHHHHHHHHhcccccccCccEE
Confidence 9999999999988765311 1111222222111 1111466777889999999999883 333
Q ss_pred eeechHHHHh---cc-cccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 168 FIDLWSKMQE---TE-GWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 168 ~vD~~~~~~~---~~-~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+..+...... .. .....+..||+|||++||.++|+.+|+.|.+.
T Consensus 239 ~qPf~~~~~~~~~~~g~d~~~~~~D~~Hps~~G~~~ia~~lwn~m~~p 286 (288)
T cd01824 239 VQPFFEDTSLPPLPDGPDLSFFSPDCFHFSQRGHAIAANALWNNLLEP 286 (288)
T ss_pred eeCchhccccccccCCCcchhcCCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 3333322111 11 11246789999999999999999999999763
No 31
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=99.84 E-value=1.7e-19 Score=141.27 Aligned_cols=185 Identities=24% Similarity=0.403 Sum_probs=135.3
Q ss_pred eEEEEcccccccccCC-----CcHHHHHHHHhc-ccCc----EEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEcc
Q 025869 4 QIVLFGDSITQQSFGS-----AGWGAALADAYC-RKAD----VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~-----~~~~~~l~~~~~-~~~~----v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G 73 (247)
+|+++|||++ .|+.. .+|+..+...+. .... +.|.+.+|.++...+.++...... ...+|+|+|++|
T Consensus 10 ~i~~~GDSlt-~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~~~s~~~~~~g~~rl~~~l~~--~~~~d~v~i~lG 86 (216)
T COG2755 10 TVLALGDSLT-AGYGPANRLEGGWVQVLAKRLVAKGVAVINLVLNGGISGDTSAGGLQRLPALLKQ--HLPPDLVIIMLG 86 (216)
T ss_pred eEEEeccchh-ccccCCCccccCchHHHHHHhhccCCeeeeeeecceeecCcchhHHHHhHHHHhc--cCCCCEEEEEee
Confidence 6999999999 56553 499999999986 3444 557778888888887777777664 222899999999
Q ss_pred CccccccCCCCCCCCCC--hhHHHHHHHHHHHHHHHhCCC-----CeEEEE-cCCCCCcchhhhHhhhhhhhcccccchh
Q 025869 74 ANDAALFGRTSERQHVP--VEEYGDNLKIMVQHLKRLSPI-----MLVVLI-TPPPVDEDGRMEYAKSLYGEKAMKLPER 145 (247)
Q Consensus 74 ~ND~~~~~~~~~~~~~~--~~~~~~~l~~~i~~~~~~~p~-----~~ivl~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 145 (247)
+||.. .. .... .+.+..+++++++.+++.++. +.++++ ..+|.... .....
T Consensus 87 ~ND~~-~~-----~~~~p~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---------------~~~~~ 145 (216)
T COG2755 87 GNDIG-PL-----RGFSPNAAEFTKNLRQLIQALRKANPLAGLTPIPVLLVGIAPPFIAT---------------DFPTY 145 (216)
T ss_pred ccccc-hh-----cccCccHHHHHHHHHHHHHHHHHhcccccccccceeEEEecCCcccc---------------chhHH
Confidence 99996 10 1123 488999999999999999754 444333 33332200 11233
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhcC
Q 025869 146 TNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVAG 212 (247)
Q Consensus 146 ~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~~ 212 (247)
.+.+...+++.+++++.+..+++.|++............+..||+|||.+||+.||+.+.+.|.+..
T Consensus 146 ~~~~~~~~~~~~~~la~~~~v~~~d~~~~~~~~~~~~~~~~~Dg~H~n~~Gy~~~a~~l~~~l~~~~ 212 (216)
T COG2755 146 GADWFHAANEILAQLANELFVPLADLFDAGVDGGRLPELLTEDGLHPNAKGYQALAEALAEVLAKLL 212 (216)
T ss_pred HHHHHHHHHHHHHHhhhhcCccchHHHhcccccccCcccccCCCCCcCHhhHHHHHHHHHHHHHHHh
Confidence 5667789999999999988899999988766411122344589999999999999999999998863
No 32
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=99.81 E-value=8.6e-19 Score=139.26 Aligned_cols=171 Identities=19% Similarity=0.176 Sum_probs=122.9
Q ss_pred cEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC-Ce
Q 025869 35 DVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI-ML 113 (247)
Q Consensus 35 ~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~-~~ 113 (247)
++.|.|.+|++++++..+++.+........|++|+|++|+||.+...+.. ...+++++|++++.++++.++++.|. .+
T Consensus 93 d~qN~G~sGatSrdl~~~l~~Ll~n~~~~~P~lVtI~lGgND~C~g~~d~-~~~tp~eefr~NL~~~L~~Lr~~lP~~s~ 171 (305)
T cd01826 93 DYQNLGVNGASSRNLLSIIKSIARNRTTDKPALVIYSMIGNDVCNGPNDT-INHTTPEEFYENVMEALKYLDTKLPNGSH 171 (305)
T ss_pred hHHHhccchhhhHHHHHHHHHhccccccCCCeEEEEEeccchhhcCCCcc-ccCcCHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 36689999999999988888877543345789999999999998754322 23689999999999999999999876 79
Q ss_pred EEEEcCCCCC---------------------cchhhhHhhhhhhhcc-------cccchhhhhhHHHHHHHHHHHHHhc-
Q 025869 114 VVLITPPPVD---------------------EDGRMEYAKSLYGEKA-------MKLPERTNEMTGVYARQCIETAKDL- 164 (247)
Q Consensus 114 ivl~~~~p~~---------------------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~- 164 (247)
|++++++... ......++.|+..... ........+..++++...++++++.
T Consensus 172 ViLvgmpd~~~L~~~~~~r~hplg~~~~~vty~~~y~~lncl~~spC~gw~~~n~t~rn~t~~~a~~l~~~~~~ia~~~~ 251 (305)
T cd01826 172 VILVGLVDGRILYDTLHNRLHPIGQLNKDVTYPNLYDYLNCLQVSPCWGWLNSNETLRNLTSERAAQLSNVLKRIAANET 251 (305)
T ss_pred EEEEeccchhhhhhhhccccccchhcccccchhhhhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999888621 1111222333311111 1123445567789999999999987
Q ss_pred ----CCCeeec-hHHHHhc----ccc-ccccc-ccccCCChhHHHHHHHHHHH
Q 025869 165 ----GVPFIDL-WSKMQET----EGW-QKKFL-SDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 165 ----~v~~vD~-~~~~~~~----~~~-~~~~~-~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
++.++|+ ...+... ++. ...+. .||+|||+.|+.++|+.+|+
T Consensus 252 f~nF~v~~~~f~l~~v~~~~~~~g~~~~~~i~~~DgfHpsq~g~~l~a~~lW~ 304 (305)
T cd01826 252 FNNFDVHYIDFPIQQIVDMWIAFGGQTWQLIEPVDGFHPSQIANALLAEVFWK 304 (305)
T ss_pred ccceeEEEecchHHHHhhHHHhcCCCchhhcccccCCCccHHHHHHHHHHhhc
Confidence 7888888 4444433 222 22444 69999999999999999986
No 33
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.80 E-value=2.2e-18 Score=139.48 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=136.2
Q ss_pred eEEEEcccccccccC----------------------CCcHHHHHHHHhcc--cCcEEecCCCCCchHH-----------
Q 025869 4 QIVLFGDSITQQSFG----------------------SAGWGAALADAYCR--KADVLLRGYGGYNTRW----------- 48 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~----------------------~~~~~~~l~~~~~~--~~~v~n~g~~G~~t~~----------- 48 (247)
++++||||+++.|.. +..|++.|++.++. ...+.|.|.+|+++..
T Consensus 1 ~l~vFGDS~sD~Gn~~~~~~~~~~~~~~~~~~grfsnG~~w~d~la~~lg~~~~~~~~N~A~~Ga~~~~~~~~~~~~~~~ 80 (270)
T cd01846 1 RLVVFGDSLSDTGNIFKLTGGSNPPPSPPYFGGRFSNGPVWVEYLAATLGLSGLKQGYNYAVGGATAGAYNVPPYPPTLP 80 (270)
T ss_pred CeEEeeCccccCCcchhhcCCCCCCCCCCCCCCccCCchhHHHHHHHHhCCCccCCcceeEecccccCCcccCCCCCCCC
Confidence 589999999997731 12789999999874 3478999999987642
Q ss_pred -HHHHhhhhcCCCC--CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcc
Q 025869 49 -ALFLLHHIFPLDN--SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED 125 (247)
Q Consensus 49 -~~~~l~~~~~~~~--~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~ 125 (247)
....+..+..... ..+.++++|++|+||+..............+++..++.++++++...+ ..+|++++.||++..
T Consensus 81 ~l~~Qv~~f~~~~~~~~~~~~l~~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g-~~~i~v~~~p~~~~~ 159 (270)
T cd01846 81 GLSDQVAAFLAAHKLRLPPDTLVAIWIGANDLLNALDLPQNPDTLVTRAVDNLFQALQRLYAAG-ARNFLVLNLPDLGLT 159 (270)
T ss_pred CHHHHHHHHHHhccCCCCCCcEEEEEeccchhhhhccccccccccHHHHHHHHHHHHHHHHHCC-CCEEEEeCCCCCCCC
Confidence 2233333332211 235699999999999985321111123466788899999999999774 445889999998877
Q ss_pred hhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHh-------cCCCeeechHHHHhcc-------------------
Q 025869 126 GRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKD-------LGVPFIDLWSKMQETE------------------- 179 (247)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-------~~v~~vD~~~~~~~~~------------------- 179 (247)
+..... .. ...+..+...+.||+++++.+.+ ..+.++|++..+.+-.
T Consensus 160 P~~~~~---~~----~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~~~~~~~~~~~p~~yGf~~~~~~C~~~~ 232 (270)
T cd01846 160 PAFQAQ---GD----AVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDTNALFNDILDNPAAYGFTNVTDPCLDYV 232 (270)
T ss_pred cccccC---Cc----ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHhCHHhcCCCcCcchhcCCC
Confidence 644321 00 01135777788888888888765 2467899998766521
Q ss_pred ----------cccccccccccCCChhHHHHHHHHHHH
Q 025869 180 ----------GWQKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 180 ----------~~~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
+...++++|++|||+++|+++|+.+++
T Consensus 233 ~~~~~~~~c~~~~~y~fwD~~HpT~~~~~~iA~~~~~ 269 (270)
T cd01846 233 YSYSPREACANPDKYLFWDEVHPTTAVHQLIAEEVAA 269 (270)
T ss_pred ccccccCCCCCccceEEecCCCccHHHHHHHHHHHHh
Confidence 123467899999999999999998875
No 34
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=7e-17 Score=127.24 Aligned_cols=180 Identities=19% Similarity=0.294 Sum_probs=131.9
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc--cCcEEecCC--CCCchHHHHHHh---hhhcCCCCCCCCcEEEEEccCc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGY--GGYNTRWALFLL---HHIFPLDNSNPPVATTIFFGAN 75 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~--~~~v~n~g~--~G~~t~~~~~~l---~~~~~~~~~~~~d~vii~~G~N 75 (247)
.+|+++|||++. +....+...|.. .+.+.++.. +|-.-..+..+. ..++.. ..+|.+|++++|.|
T Consensus 117 ~kvLvvGDslm~------gla~gl~~al~t~~~i~i~~~sn~SSGlvr~dYfdWpk~i~~~l~~--~~~~a~vVV~lGaN 188 (354)
T COG2845 117 DKVLVVGDSLMQ------GLAEGLDKALATSPGITIVTRSNGSSGLVRDDYFDWPKAIPELLDK--HPKPAAVVVMLGAN 188 (354)
T ss_pred CEEEEechHHhh------hhHHHHHHHhccCCCcEEEEeecCCCCcccccccccHHHHHHHHHh--cCCccEEEEEecCC
Confidence 379999999995 566666666643 366666544 443332222222 222222 34899999999999
Q ss_pred cccccCCCCCC----CCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHH
Q 025869 76 DAALFGRTSER----QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTG 151 (247)
Q Consensus 76 D~~~~~~~~~~----~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (247)
|-.....-+.. .....++|.+.++++++.++.+ ..+++|+++|++... .+++.+.
T Consensus 189 D~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~--~~~V~WvGmP~~r~~-------------------~l~~dm~ 247 (354)
T COG2845 189 DRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTH--KVPVLWVGMPPFRKK-------------------KLNADMV 247 (354)
T ss_pred CHHhcccCCeeeecCchHHHHHHHHHHHHHHHHhccc--CCcEEEeeCCCcccc-------------------ccchHHH
Confidence 97543211111 1235678999999999999988 777999999987443 4777888
Q ss_pred HHHHHHHHHHHhcCCCeeechHHHHhccc-------------ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 152 VYARQCIETAKDLGVPFIDLWSKMQETEG-------------WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 152 ~~~~~~~~~a~~~~v~~vD~~~~~~~~~~-------------~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
.+|+..++.+++++=.+||+++.+.+..+ +-.....||+|.|.+|.+++|.++.+.|+..
T Consensus 248 ~ln~iy~~~vE~~~gk~i~i~d~~v~e~G~~f~~~~~D~NGq~vrlR~~DGIh~T~~Gkrkla~~~~k~I~~~ 320 (354)
T COG2845 248 YLNKIYSKAVEKLGGKFIDIWDGFVDEGGKDFVTTGVDINGQPVRLRAKDGIHFTKEGKRKLAFYLEKPIRAE 320 (354)
T ss_pred HHHHHHHHHHHHhCCeEEEecccccccCCceeEEeccccCCceEEEeccCCceechhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999998887654 2234568999999999999999999999887
No 35
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.69 E-value=2.9e-15 Score=109.46 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=104.4
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEcCCCCCcchhhhHhhhhhhhccc
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDEDGRMEYAKSLYGEKAM 140 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~ 140 (247)
..+.|+|++..|..|+.... ..+.++|.+||++++..+++-. +.+.+||.+++|+.+.....+. ..+..
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~------~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl----~~~~~ 117 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQ------RNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFL----LPELH 117 (183)
T ss_pred CCceeEEEEecceecccccC------CCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCcee----ccccc
Confidence 56789999999999998764 1378999999999999999855 6899999999998655432211 11111
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 141 KLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
.....+.....++|.+.+++++++++.+.|++..+.... .....||+|+|+.||+++++.+...|
T Consensus 118 ~~~~~lr~dv~eaN~~A~~va~~~~~dVlDLh~~fr~~~---~~~~~DgVHwn~~a~r~ls~lll~hI 182 (183)
T cd01842 118 DLSKSLRYDVLEGNFYSATLAKCYGFDVLDLHYHFRHAM---QHRVRDGVHWNYVAHRRLSNLLLAHV 182 (183)
T ss_pred cccccchhHHHHHHHHHHHHHHHcCceeeehHHHHHhHH---hhcCCCCcCcCHHHHHHHHHHHHHhh
Confidence 122223445779999999999999999999999985432 24578999999999999999998876
No 36
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=99.62 E-value=9.5e-15 Score=118.83 Aligned_cols=198 Identities=15% Similarity=0.218 Sum_probs=125.1
Q ss_pred ceEEEEcccccccccCC---------C--------cHHHHHHHHhc--------ccCcEEecCCCCCchHH---------
Q 025869 3 PQIVLFGDSITQQSFGS---------A--------GWGAALADAYC--------RKADVLLRGYGGYNTRW--------- 48 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~---------~--------~~~~~l~~~~~--------~~~~v~n~g~~G~~t~~--------- 48 (247)
++|++||||+++.|... + .|...+...++ ......|++.+|.++..
T Consensus 2 ~~i~vFGDSl~D~Gn~~~~~~~~~~~gRFsnG~~~~d~~~~~~~~~~~~~~~~~~~~~G~NfA~gGa~~~~~~~~~~~~~ 81 (281)
T cd01847 2 SRVVVFGDSLSDVGTYNRAGVGAAGGGRFTVNDGSIWSLGVAEGYGLTTGTATPTTPGGTNYAQGGARVGDTNNGNGAGA 81 (281)
T ss_pred CceEEecCcccccCCCCccccCCCCCcceecCCcchHHHHHHHHcCCCcCcCcccCCCCceeeccCccccCCCCcccccc
Confidence 57999999999977421 1 33333332222 11345788888875431
Q ss_pred ----HHHHhhhhcCCCC-CCCCcEEEEEccCccccccCCCCCC-------CCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q 025869 49 ----ALFLLHHIFPLDN-SNPPVATTIFFGANDAALFGRTSER-------QHVPVEEYGDNLKIMVQHLKRLSPIMLVVL 116 (247)
Q Consensus 49 ----~~~~l~~~~~~~~-~~~~d~vii~~G~ND~~~~~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl 116 (247)
+.+.++.+..... ..+-++++|++|.||+......... ...-.......+...++.+.+.+ ..+|++
T Consensus 82 ~~~~l~~Qv~~f~~~~~~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~G-Ar~ilv 160 (281)
T cd01847 82 VLPSVTTQIANYLAAGGGFDPNALYTVWIGGNDLIAALAALTTATTTQAAAVAAAATAAADLASQVKNLLDAG-ARYILV 160 (281)
T ss_pred CCCCHHHHHHHHHHhcCCCCCCeEEEEecChhHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHCC-CCEEEE
Confidence 2223333332211 1356899999999998642100000 00112345677888888888886 456899
Q ss_pred EcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcC---CCeeechHHHHhcc--------------
Q 025869 117 ITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG---VPFIDLWSKMQETE-------------- 179 (247)
Q Consensus 117 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---v~~vD~~~~~~~~~-------------- 179 (247)
++.||++..+..... .....+..+.....||+.++...++.+ +.++|++..+.+..
T Consensus 161 ~~lpplgc~P~~~~~-------~~~~~~~~n~~~~~~N~~L~~~l~~l~~~~i~~~D~~~~~~~i~~nP~~yGf~~~~~~ 233 (281)
T cd01847 161 PNLPDVSYTPEAAGT-------PAAAAALASALSQTYNQTLQSGLNQLGANNIIYVDTATLLKEVVANPAAYGFTNTTTP 233 (281)
T ss_pred eCCCCcccCcchhhc-------cchhHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEHHHHHHHHHhChHhcCccCCCcc
Confidence 999999887754321 011234577788899999988777544 66899988765421
Q ss_pred -------------------cccccccccccCCChhHHHHHHHHHHHHH
Q 025869 180 -------------------GWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 180 -------------------~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
+...++++|++|||+++|+++|+.++..|
T Consensus 234 CC~~~~~~~~~~~~~~~c~~~~~y~fwD~~HpTe~~~~~ia~~~~~~l 281 (281)
T cd01847 234 ACTSTSAAGSGAATLVTAAAQSTYLFADDVHPTPAGHKLIAQYALSRL 281 (281)
T ss_pred ccCCCCccccccccccCCCCccceeeccCCCCCHHHHHHHHHHHHHhC
Confidence 01235789999999999999999988764
No 37
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.61 E-value=5e-15 Score=122.39 Aligned_cols=200 Identities=17% Similarity=0.140 Sum_probs=127.4
Q ss_pred ceEEEEcccccccccC----------------------------CCcHHHHHHHHhcccC---------------cEEec
Q 025869 3 PQIVLFGDSITQQSFG----------------------------SAGWGAALADAYCRKA---------------DVLLR 39 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~----------------------------~~~~~~~l~~~~~~~~---------------~v~n~ 39 (247)
|.|++||||+++.|.. +..|.+.|++.++... .-.|+
T Consensus 1 ~al~vFGDS~sD~Gn~~~~~~~~~~~~~PyG~~~~~~p~GRfSnG~~~~d~la~~lgl~~~~p~~~~~~~~~~~~~G~Nf 80 (315)
T cd01837 1 PALFVFGDSLVDTGNNNYLPTLAKANFPPYGIDFPGRPTGRFSNGRLIIDFIAEALGLPLLPPPYLSPNGSSDFLTGVNF 80 (315)
T ss_pred CcEEEecCccccCCCccccccccccCCCCCcCcCCCCCCccccCCchhhhhhhhhccCCCCCCCccCccccchhhcccee
Confidence 5689999999997732 1257788888775321 24689
Q ss_pred CCCCCchH----------HHHHHhhhhcCCC-------------CCCCCcEEEEEccCccccccCCCCCCCCCC----hh
Q 025869 40 GYGGYNTR----------WALFLLHHIFPLD-------------NSNPPVATTIFFGANDAALFGRTSERQHVP----VE 92 (247)
Q Consensus 40 g~~G~~t~----------~~~~~l~~~~~~~-------------~~~~~d~vii~~G~ND~~~~~~~~~~~~~~----~~ 92 (247)
+.+|.++. .+...++.+.... ...+-++++|++|.||+............. .+
T Consensus 81 A~gGA~~~~~~~~~~~~~~l~~Qv~~F~~~~~~~~~~~g~~~~~~~~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~ 160 (315)
T cd01837 81 ASGGAGILDSTGFLGSVISLSVQLEYFKEYKERLRALVGEEAAADILSKSLFLISIGSNDYLNNYFANPTRQYEVEAYVP 160 (315)
T ss_pred cccCCccccCCcceeeeecHHHHHHHHHHHHHHHHHhhCHHHHHHHHhCCEEEEEecccccHHHHhcCccccCCHHHHHH
Confidence 99887642 1111122111100 112458999999999986421110000112 23
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhc-------C
Q 025869 93 EYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDL-------G 165 (247)
Q Consensus 93 ~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~ 165 (247)
.....+...++++.+.+ ..+|++++.||++..+..... .......+....+.....||+.+++..++. .
T Consensus 161 ~~v~~i~~~v~~L~~~G-Ar~~~v~~lpplgc~P~~~~~---~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~ 236 (315)
T cd01837 161 FLVSNISSAIKRLYDLG-ARKFVVPGLGPLGCLPSQRTL---FGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAK 236 (315)
T ss_pred HHHHHHHHHHHHHHhCC-CcEEEecCCCCcCccHHHHhh---cCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 45666777788887776 456999999999888754422 111123456678888899999998877642 3
Q ss_pred CCeeechHHHHhcc------------------------------------cccccccccccCCChhHHHHHHHHHHH
Q 025869 166 VPFIDLWSKMQETE------------------------------------GWQKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 166 v~~vD~~~~~~~~~------------------------------------~~~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
+.++|++..+.+.. +...++++|++|||+++|+++|+.++.
T Consensus 237 i~~~D~y~~~~~i~~np~~yGf~~~~~aCc~~g~~~~~~~c~~~~~~~C~~p~~y~fwD~~HpT~~~~~~ia~~~~~ 313 (315)
T cd01837 237 FVYADIYNALLDLIQNPAKYGFENTLKACCGTGGPEGGLLCNPCGSTVCPDPSKYVFWDGVHPTEAANRIIADALLS 313 (315)
T ss_pred EEEEehhHHHHHHHhChhhcCCcCCCcCccCCCCCCcccccCCCCCCcCCCccceEEeCCCChHHHHHHHHHHHHhc
Confidence 56799998754310 112356799999999999999998864
No 38
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=99.56 E-value=5.4e-14 Score=118.07 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=124.5
Q ss_pred ceEEEEcccccccccC----------------------CCcHHHHHHHHhcccCcEEecCCCCCchHH------------
Q 025869 3 PQIVLFGDSITQQSFG----------------------SAGWGAALADAYCRKADVLLRGYGGYNTRW------------ 48 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~----------------------~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~------------ 48 (247)
++|++||||+++.|.. +..|.+.|+...-.+....|++.+|+++..
T Consensus 143 ~ai~vFGDSlsDtGnn~y~~t~~~~PPyG~~ftGRFSNG~v~~DfLA~~pyl~~~G~NFA~GGA~~~t~~~~~~~~~~~~ 222 (408)
T PRK15381 143 TRLVFFGDSLSDSLGRMFEKTHHILPSYGQYFGGRFTNGFTWTEFLSSPHFLGKEMLNFAEGGSTSASYSCFNCIGDFVS 222 (408)
T ss_pred CeEEEeCCccccCCCccccccccCCCCCCCCCCcccCCCchhhheeccccccCCCCceEeecccccccccccccccCccC
Confidence 5899999999997421 124455554221001245688888887531
Q ss_pred -HHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchh
Q 025869 49 -ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGR 127 (247)
Q Consensus 49 -~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~ 127 (247)
....+..+... .-++++|++|.||..... ....+.....+...++.+.+.+ ..+|+|.+.||++..+.
T Consensus 223 ~L~~Qv~~~~~~----~~aL~lV~iG~NDy~~~~------~~~v~~vV~~~~~~l~~Ly~lG-ARk~vV~nlpPlGC~P~ 291 (408)
T PRK15381 223 NTDRQVASYTPS----HQDLAIFLLGANDYMTLH------KDNVIMVVEQQIDDIEKIISGG-VNNVLVMGIPDLSLTPY 291 (408)
T ss_pred CHHHHHHHHHhc----CCcEEEEEeccchHHHhH------HHHHHHHHHHHHHHHHHHHHcC-CcEEEEeCCCCCCCcch
Confidence 22233332221 458999999999987321 1134566677777888888776 56799999999988764
Q ss_pred hhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhc-------CCCeeechHHHHhcc------cc-------------
Q 025869 128 MEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDL-------GVPFIDLWSKMQETE------GW------------- 181 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~v~~vD~~~~~~~~~------~~------------- 181 (247)
.... ...+..+.....||+.+++...+. .+.++|++..+.+-. +.
T Consensus 292 ~~~~---------~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~yGF~~~~~cCg~G~~~ 362 (408)
T PRK15381 292 GKHS---------DEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENPYTHHGYVH 362 (408)
T ss_pred hhcc---------CchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhcCCCccccccCCCccC
Confidence 3211 112456667777888877776542 356889998765411 00
Q ss_pred ------------cccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 182 ------------QKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 182 ------------~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
..++++|.+|||+++|+++|..+.+.|.+.
T Consensus 363 ~~~~C~p~~~~C~~YvFWD~vHPTe~ah~iiA~~~~~~i~~~ 404 (408)
T PRK15381 363 VPGAKDPQLDICPQYVFNDLVHPTQEVHHCFAIMLESFIAHH 404 (408)
T ss_pred CccccCcccCCCCceEecCCCCChHHHHHHHHHHHHHHHHHh
Confidence 234679999999999999999999999874
No 39
>PLN03156 GDSL esterase/lipase; Provisional
Probab=99.48 E-value=2.1e-12 Score=107.74 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=95.6
Q ss_pred CcEEEEEccCcccccc--CCCCCCCCCChhHHH----HHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhc
Q 025869 65 PVATTIFFGANDAALF--GRTSERQHVPVEEYG----DNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEK 138 (247)
Q Consensus 65 ~d~vii~~G~ND~~~~--~~~~~~~~~~~~~~~----~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~ 138 (247)
-.+++|++|+||+... ...........+++. +.+...++.+...+ ..+|++++.||++..+..... ....
T Consensus 158 ~sL~~i~iG~NDy~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~i~~Ly~~G-AR~~~V~~lpplGc~P~~~~~---~~~~ 233 (351)
T PLN03156 158 EALYLISIGTNDFLENYYTFPGRRSQYTVSQYQDFLIGIAENFVKKLYRLG-ARKISLGGLPPMGCLPLERTT---NLMG 233 (351)
T ss_pred cCeEEEEecchhHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEecCCCccccCHHHHhh---cCCC
Confidence 4689999999999631 101111223445543 34456677777776 567999999999888753211 1111
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhc-------CCCeeechHHHHhc---c-----------------------------
Q 025869 139 AMKLPERTNEMTGVYARQCIETAKDL-------GVPFIDLWSKMQET---E----------------------------- 179 (247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~a~~~-------~v~~vD~~~~~~~~---~----------------------------- 179 (247)
...+.+..|.....||+.+++..++. .+.++|.+..+.+- .
T Consensus 234 ~~~C~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~yGf~~~~~aCCg~g~~~~~~~C~~~~~ 313 (351)
T PLN03156 234 GSECVEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAYGFEVTSVACCATGMFEMGYLCNRNNP 313 (351)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCccccCcccCCccccCCCCCCCccccCCCCC
Confidence 23456678888889999988877542 35678999876531 0
Q ss_pred ----cccccccccccCCChhHHHHHHHHHHHHHHh
Q 025869 180 ----GWQKKFLSDGLHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 180 ----~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
+..+++++|++|||+++|+++|+.++..|.+
T Consensus 314 ~~C~~p~~yvfWD~~HPTe~a~~~iA~~~~~~l~~ 348 (351)
T PLN03156 314 FTCSDADKYVFWDSFHPTEKTNQIIANHVVKTLLS 348 (351)
T ss_pred CccCCccceEEecCCCchHHHHHHHHHHHHHHHHH
Confidence 0123568999999999999999999998865
No 40
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=99.47 E-value=1.4e-12 Score=106.35 Aligned_cols=173 Identities=16% Similarity=0.102 Sum_probs=108.4
Q ss_pred EecCCCCCchHHHH----H---HhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 37 LLRGYGGYNTRWAL----F---LLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 37 ~n~g~~G~~t~~~~----~---~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
.|.+.+|+.++... + ++++...-....++++|.|++|+||++...+.......+.+++++++++.++.++..-
T Consensus 150 lNvA~~Ga~s~Dlp~QAr~Lv~rik~~~~i~~~~dWKLi~IfIG~ND~c~~c~~~~~~~~~~~~~~~~i~~Al~~L~~nv 229 (397)
T KOG3670|consen 150 LNVAEPGAESEDLPDQARDLVSRIKKDKEINMKNDWKLITIFIGTNDLCAYCEGPETPPSPVDQHKRNIRKALEILRDNV 229 (397)
T ss_pred cccccccccchhhHHHHHHHHHHHHhccCcccccceEEEEEEeccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 36778888775432 2 3333333335678999999999999987654334455688899999999999999999
Q ss_pred CCCeEEEEcCCCCCcchh------------hhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCC-------eee
Q 025869 110 PIMLVVLITPPPVDEDGR------------MEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVP-------FID 170 (247)
Q Consensus 110 p~~~ivl~~~~p~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-------~vD 170 (247)
|.+.|.+++++++.-... ...+.|....+ ............|++...++....... +-.
T Consensus 230 PR~iV~lvg~~~~~~l~q~~~~~~~c~~~~~~ec~c~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~f~~~dFtvvvqP 307 (397)
T KOG3670|consen 230 PRTIVSLVGMFNVSLLRQASKLLKFCKRLHRFECPCLLNKN--FELADIEGFCYDYQNKEFEIQNNGRFDREDFTVVVQP 307 (397)
T ss_pred CceEEEEecCCCHHHHHHhhcccccccccccccCccccccc--cchhHHHHHHHHHHHHHHHHHhcccccccceeEEeec
Confidence 999888888877511100 00111111000 001112234456666666666543221 111
Q ss_pred ch----HHHHhccc-ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 171 LW----SKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 171 ~~----~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+. .+...++. ....|..|.+|+++.||..+|+.+|+.|-+.
T Consensus 308 f~~~~t~P~l~~g~~d~~ffa~DcfHlS~~GHa~~ak~lWNnl~ep 353 (397)
T KOG3670|consen 308 FFTDITIPPLPHGRYDLTFFAPDCFHLSQRGHAIAAKHLWNNLFEP 353 (397)
T ss_pred cccccCCCcCCCCCCCchhcccCccccchHHHHHHHHHHHHHhhcC
Confidence 11 11111222 2457789999999999999999999999887
No 41
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=98.85 E-value=1.5e-08 Score=82.59 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=111.8
Q ss_pred eEEE--EcccccccccCCCcHHHH--HHHHhccc--CcEEecCCCCCchHHHHHHhhhhc-CCCCCCCCcEEEE-EccCc
Q 025869 4 QIVL--FGDSITQQSFGSAGWGAA--LADAYCRK--ADVLLRGYGGYNTRWALFLLHHIF-PLDNSNPPVATTI-FFGAN 75 (247)
Q Consensus 4 ~i~~--~GDS~~~~g~~~~~~~~~--l~~~~~~~--~~v~n~g~~G~~t~~~~~~l~~~~-~~~~~~~~d~vii-~~G~N 75 (247)
++++ +||++.. +|.+. |...|..+ +.+...+.++.-..........+. ......+++.+++ ++|.|
T Consensus 39 ~~lV~vvGD~~a~------~la~g~~l~~~~a~~p~v~v~~~~~~~lvr~d~~dw~~~i~~~~~~~~~~~~vvv~miG~n 112 (327)
T PF04311_consen 39 RILVRVVGDFLAS------GLADGFYLQEAFADNPDVAVADRVNGSLVRDDYYDWPEAIAASLIEAEKPAAVVVVMIGSN 112 (327)
T ss_pred eEEEeeccchhhh------hhhhhhHHHHHhccCCCeEEEeecCCCcccccccccHHHhhhhhhhccCCceEEEEEeccC
Confidence 5777 8999995 78888 88888543 555566555522111112222222 1112346666666 99999
Q ss_pred cccccCCCCCCCCCChhHHHH-HHHHHHHHHHHhCCCCeEEEEcCC-CCCcchhhhHhhhhhhhcccccchhhhhhHHHH
Q 025869 76 DAALFGRTSERQHVPVEEYGD-NLKIMVQHLKRLSPIMLVVLITPP-PVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVY 153 (247)
Q Consensus 76 D~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~~~p~~~ivl~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
|.......++......+.+.+ +-+++...+++. +..+++++.| ++.... ..+.+..+
T Consensus 113 Drq~l~~gds~~~~~s~~W~~~Y~~r~~~~i~~~--~vp~~wvglPd~~~~~~-------------------~~~d~l~~ 171 (327)
T PF04311_consen 113 DRQQLRIGDSQMQFRSPEWLEEYGKRIAKVIREL--KVPSIWVGLPDYFRWPK-------------------MSADMLAL 171 (327)
T ss_pred CCcccccCCcccccCCHHHHHHHHHHHHHHHHhc--CCCeEEEeCCcccCChh-------------------hhHHHHHh
Confidence 986543323332222333322 223355556666 6779999998 554332 33455577
Q ss_pred HHH-HHHHHHhcCCCeeechHHHHhccc------------ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 154 ARQ-CIETAKDLGVPFIDLWSKMQETEG------------WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 154 ~~~-~~~~a~~~~v~~vD~~~~~~~~~~------------~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
|+. .+..+...+..|+|.++ |.+..+ .......||+|.|.+ +++.|=++..-|.+.
T Consensus 172 n~~~yr~~a~~~g~~fvDiwd-F~De~G~~~~~Gpd~~gq~~rlR~~dgl~ft~A-~rkla~~ve~pi~r~ 240 (327)
T PF04311_consen 172 NDILYRDAAEKAGGGFVDIWD-FVDENGRYLAFGPDEWGQIYRLRSNDGLNFTKA-KRKLAFYVEKPIMRL 240 (327)
T ss_pred cchhHHHHHHHhcCccccccc-cccCCCCcccCCCCccchHhhhhhhcceeeeec-ccceEEEechHhhhh
Confidence 777 78888888999999999 887543 112335899999999 998888777666665
No 42
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=98.85 E-value=8.1e-08 Score=77.28 Aligned_cols=142 Identities=20% Similarity=0.198 Sum_probs=91.4
Q ss_pred CCcEEEEEccCccccccCCCC---CCCCCChhHHHHHHHHHHHHHHHhC----CCCeEEEEcCCCCCcchhhhHhhhhhh
Q 025869 64 PPVATTIFFGANDAALFGRTS---ERQHVPVEEYGDNLKIMVQHLKRLS----PIMLVVLITPPPVDEDGRMEYAKSLYG 136 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~---~~~~~~~~~~~~~l~~~i~~~~~~~----p~~~ivl~~~~p~~~~~~~~~~~~~~~ 136 (247)
.||+||+..|..+........ .......+.|..+++.+++.+.... |..++++.+..|.......-.. .+
T Consensus 100 ~pdvvV~nsG~W~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~~~---gg 176 (263)
T PF13839_consen 100 RPDVVVINSGLWYLRRSGFIEWGDNKEINPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDWNS---GG 176 (263)
T ss_pred CCCEEEEEcchhhhhcchhcccCCCcCcchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCcccccccccc---CC
Confidence 799999999999984310000 0122467889999999999888654 5678999888776554320000 00
Q ss_pred hc-ccccchhhhhhHHHHHHHHHHHH-HhcCCCeeechHHHHh-cc-c-c-------cccccccccC-CChhHHHHHHHH
Q 025869 137 EK-AMKLPERTNEMTGVYARQCIETA-KDLGVPFIDLWSKMQE-TE-G-W-------QKKFLSDGLH-LTEEGNAVVHKE 203 (247)
Q Consensus 137 ~~-~~~~~~~~~~~~~~~~~~~~~~a-~~~~v~~vD~~~~~~~-~~-~-~-------~~~~~~Dg~H-p~~~G~~~iA~~ 203 (247)
.. ........+.....+++++.++. ...++.++|+...+.. .. + - ...-..||+| +.+.-.+.+.+.
T Consensus 177 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~~~~Dc~Hw~~p~v~d~~~~l 256 (263)
T PF13839_consen 177 SCNPPRREEITNEQIDELNEALREALKKNSRVHLLDIFTMLSSFRPDDAHPGIYRNQWPRQPQDCLHWCLPGVIDTWNEL 256 (263)
T ss_pred CcCcccccCCCHHHHHHHHHHHHHHhhcCCCceeeeecchhhhccccccCcccccCCCCCCCCCCcCcCCCcHHHHHHHH
Confidence 00 01122345667788888888887 7788999999433332 22 1 0 0011489999 888888899998
Q ss_pred HHHHH
Q 025869 204 VVEVF 208 (247)
Q Consensus 204 l~~~l 208 (247)
|...|
T Consensus 257 L~~~l 261 (263)
T PF13839_consen 257 LLNLL 261 (263)
T ss_pred HHHHh
Confidence 88765
No 43
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=98.40 E-value=8.9e-06 Score=66.99 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=118.6
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC---cccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA---NDAA 78 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~---ND~~ 78 (247)
++.++++|||-+ ..+.. ..+.+. -+++.++|++.+|.+.......+.++.+. ..+||+|++.... |+..
T Consensus 63 kk~~~~fG~SRs-~~F~~----~~i~~~-~~dw~~yNFS~P~~~P~y~~y~le~i~~~--g~kPd~v~le~sp~~Fn~~s 134 (345)
T PF07611_consen 63 KKLLVVFGSSRS-LPFSN----EYIEKK-YPDWEVYNFSVPGGTPAYYLYWLEKILED--GIKPDFVILEVSPEGFNKNS 134 (345)
T ss_pred ceEEEEEecCcc-cccCh----HHHHhh-CCCCeEEEecCCCCchHHHHHHHHHHHhC--CCCCCEEEEEcCHhHhcCCc
Confidence 346999999999 65532 223333 45689999999999998888889998875 7799999998544 6542
Q ss_pred ccC---C----CCCC-----------------------------------------------------------------
Q 025869 79 LFG---R----TSER----------------------------------------------------------------- 86 (247)
Q Consensus 79 ~~~---~----~~~~----------------------------------------------------------------- 86 (247)
... . .+..
T Consensus 135 ~~~~~~~L~y~~d~~Fil~~~d~~s~~d~~~y~~~rlF~~~~~~p~~~~i~~r~k~~~~~~~~~~~~~~~~~L~~~~~~~ 214 (345)
T PF07611_consen 135 GFFKDYNLRYSFDPRFILRHADRFSKDDVDYYFAKRLFATSRYPPRLKNISARIKNKKLEAYEKLRELTIRNLKKGEGNA 214 (345)
T ss_pred chhhcchhhcCCCHHHHHHHHHhcCHHHHHHHHHHHhheeeccCCCHHHHHHHhcCcchhhHHHHHHHHHHHHHhccccc
Confidence 110 0 0000
Q ss_pred --C-----CCC---------------------hhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhc
Q 025869 87 --Q-----HVP---------------------VEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEK 138 (247)
Q Consensus 87 --~-----~~~---------------------~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~ 138 (247)
. ..+ .+.-..-++++++.+++. +++++++.|.-...-. .
T Consensus 215 ~~~~~~~~~~d~ekL~~~s~~~~~~~l~~f~~s~~q~~F~e~~L~~ake~--~I~~vl~~P~V~~~~~-~---------- 281 (345)
T PF07611_consen 215 FSPFSPYVENDPEKLEKSSERIFKWYLSSFTFSETQFFFLEKFLKLAKEN--GIPVVLWWPKVSPPYE-K---------- 281 (345)
T ss_pred cCCCCCcCCCCHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHc--CCcEEEEEeccCHHHH-H----------
Confidence 0 000 001345688999999998 7777877774321110 0
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 139 AMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
.-+.......+...+++++++.++.++|++.. ....=..+.|+-|.+..=+.-.++.+.+.+
T Consensus 282 ----~~~~~~~~~~w~~~i~~l~~~~~~~~~dmn~d----~~~~C~~F~D~~HlS~~Cy~e~~~~l~~~~ 343 (345)
T PF07611_consen 282 ----LYKELKVYESWWPIIKKLAKEYGIPFLDMNED----PSYKCDDFSDASHLSPDCYPELMDILFKRY 343 (345)
T ss_pred ----HHHhhchhhHHHHHHHHHHhcCCceEecccCC----CCcchhhccCccccCcccchHHHHHHHHhc
Confidence 01122345688899999999999999999762 111114478999999999998888887754
No 44
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=98.20 E-value=1.2e-05 Score=66.01 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=83.2
Q ss_pred EEEEccCccccccCCCCCCCCCChhHH----HHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccc
Q 025869 68 TTIFFGANDAALFGRTSERQHVPVEEY----GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLP 143 (247)
Q Consensus 68 vii~~G~ND~~~~~~~~~~~~~~~~~~----~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~ 143 (247)
..++.|.||....... .......+ +.++...++.+.+.+ ...|++++.|...-.+.... .....
T Consensus 165 ~~~~ggand~~~~~~~---~a~~~q~~~~~~~~~~~~~Vq~L~~AG-A~~i~v~~lpDl~l~P~~~~--------~~~~~ 232 (370)
T COG3240 165 YFLWGGANDYLALPML---KAAAYQQLEGSTKADQSSAVQRLIAAG-ARNILVMTLPDLSLTPAGKA--------YGTEA 232 (370)
T ss_pred HHHhhcchhhhccccc---chhhhHHHhcchhhHHHHHHHHHHHhh-ccEEEEeecccccccccccc--------ccchH
Confidence 4566789998754211 11122222 235667777777774 23356666655444332221 11111
Q ss_pred hhhhhhHHHHHHHHHHHHHhcC--CCeeechHHHHhccc----------------------------------ccccccc
Q 025869 144 ERTNEMTGVYARQCIETAKDLG--VPFIDLWSKMQETEG----------------------------------WQKKFLS 187 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~a~~~~--v~~vD~~~~~~~~~~----------------------------------~~~~~~~ 187 (247)
.+..+....||..+++-.++.+ +..+|++..+.+-.. ..+++++
T Consensus 233 ~~a~~~t~~~Na~L~~~L~~~g~nIi~iD~~~llk~im~nPa~fGlant~~~~c~~~~~~~~~~a~~p~~~~~~~~ylFa 312 (370)
T COG3240 233 IQASQATIAFNASLTSQLEQLGGNIIRIDTYTLLKEIMTNPAEFGLANTTAPACDATVSNPACSASLPALCAAPQKYLFA 312 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEeEhHHHHHHHHhCHHhcCcccCCCcccCcccCCcccccccccccCCccceeee
Confidence 2455677789998888888776 777899887765210 1127899
Q ss_pred cccCCChhHHHHHHHHHHHHHHhc
Q 025869 188 DGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 188 Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
|.+|||..+|+++|+.+...|...
T Consensus 313 D~vHPTt~~H~liAeyila~l~ap 336 (370)
T COG3240 313 DSVHPTTAVHHLIAEYILARLAAP 336 (370)
T ss_pred cccCCchHHHHHHHHHHHHHHhCc
Confidence 999999999999999999988653
No 45
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=98.09 E-value=2.8e-05 Score=55.21 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCee
Q 025869 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFI 169 (247)
Q Consensus 90 ~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~v 169 (247)
...+|. .++-+++.+++. ++.++++.+|-.+.- ... .+ ...+..+.+.+.++..|+++|+.++
T Consensus 31 ~SpEy~-Dl~l~L~~~k~~--g~~~lfVi~PvNg~w--ydy---------tG---~~~~~r~~~y~kI~~~~~~~gf~v~ 93 (130)
T PF04914_consen 31 KSPEYD-DLQLLLDVCKEL--GIDVLFVIQPVNGKW--YDY---------TG---LSKEMRQEYYKKIKYQLKSQGFNVA 93 (130)
T ss_dssp S-THHH-HHHHHHHHHHHT--T-EEEEEE----HHH--HHH---------TT-----HHHHHHHHHHHHHHHHTTT--EE
T ss_pred CCccHH-HHHHHHHHHHHc--CCceEEEecCCcHHH--HHH---------hC---CCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 345554 589999999999 777777776543211 110 00 1234567889999999999999999
Q ss_pred echHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHh
Q 025869 170 DLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 170 D~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
|+.+.- ...+++.|-+||..+|=-.+-+.|.+.+.+
T Consensus 94 D~s~~~-----y~~yfm~D~iHlgw~GWv~vd~~i~~f~~~ 129 (130)
T PF04914_consen 94 DFSDDE-----YEPYFMQDTIHLGWKGWVYVDQAIYPFYKE 129 (130)
T ss_dssp E-TTGT-----TSTTSBSSSSSB-THHHHHHHHHHHHHHHS
T ss_pred ecccCC-----CCCceeeecccCchhhHHHHHHHHHHHHhc
Confidence 996532 245899999999999999999999887764
No 46
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=97.97 E-value=7.4e-05 Score=59.27 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=82.0
Q ss_pred CCcEEEEEccCccccccC--------CCCC------CC-----CCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC-CCC
Q 025869 64 PPVATTIFFGANDAALFG--------RTSE------RQ-----HVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP-PVD 123 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~--------~~~~------~~-----~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~-p~~ 123 (247)
+.|++||.+|+.-.+... +++- .. ..+.++..+.++.+++.+++.+|+++||+.-.| |..
T Consensus 101 ~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilTVSPVrl~ 180 (251)
T PF08885_consen 101 EADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILTVSPVRLI 180 (251)
T ss_pred hCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEEeccchhh
Confidence 689999999998765432 1111 01 267788999999999999999999998887655 222
Q ss_pred cchhhhHhhhhhhhcccccchhhhh-hHHHHHHHHHHHHHh-cCCCeeechHHHHhcccccccccccccCCChhHHHHHH
Q 025869 124 EDGRMEYAKSLYGEKAMKLPERTNE-MTGVYARQCIETAKD-LGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVH 201 (247)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~-~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA 201 (247)
...... ..-.-|. .-.....++.++++. .++.|+.-++.+.+.......|..|-.|||+.|-+.+-
T Consensus 181 ~T~~~~------------d~~~an~~SKs~Lr~a~~~l~~~~~~v~YFPSYEiv~d~lrdyrfy~~D~~Hps~~aV~~I~ 248 (251)
T PF08885_consen 181 ATFRDR------------DGLVANQYSKSTLRAAAHELVRAFDDVDYFPSYEIVMDELRDYRFYAEDMRHPSPQAVDYIW 248 (251)
T ss_pred cccccc------------cchhhhhhhHHHHHHHHHHHHhcCCCceEcchHhhccCcccccccccccCCCCCHHHHHHHH
Confidence 210000 0001111 112333444455544 46889999998887654444678899999999987664
Q ss_pred H
Q 025869 202 K 202 (247)
Q Consensus 202 ~ 202 (247)
+
T Consensus 249 ~ 249 (251)
T PF08885_consen 249 E 249 (251)
T ss_pred h
Confidence 4
No 47
>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes. In the latter two taxonomic groups some of the proteins are annotated as either sialic acid-specific 9-O-acetylesterase (3.1.1.53 from EC) or acetylxylan esterase related enzyme. The function of this domain is unknown.; PDB: 3PT5_A 2APJ_C 1ZMB_D.
Probab=96.30 E-value=0.086 Score=42.26 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=88.9
Q ss_pred cHHHHHHHHhcccCcEEecCCCCCchHH-------------------------------HHHHhhhhcCCCCCCCCcEEE
Q 025869 21 GWGAALADAYCRKADVLLRGYGGYNTRW-------------------------------ALFLLHHIFPLDNSNPPVATT 69 (247)
Q Consensus 21 ~~~~~l~~~~~~~~~v~n~g~~G~~t~~-------------------------------~~~~l~~~~~~~~~~~~d~vi 69 (247)
.+...|.+.++..+-+++.+++|..... ....+..+. ....+-|+
T Consensus 73 ~F~~~l~~~~~~pVglI~~a~GGt~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~i~~~~----~~~i~gvl 148 (255)
T PF03629_consen 73 YFGKELQKALGVPVGLINCAWGGTSIEAWMPGESLEWDPELKAWLYKTYAQNKGYPGALYNAMIAPLK----AYGIKGVL 148 (255)
T ss_dssp HHHHHHHHCCTCEEEEEEEE-TT-BGGGGSTTSTTEE-TT--B-STT---------SHHHHHHHHHHH----HHEEEEEE
T ss_pred HHHHHHhhcCCCcEEEEecccCCeehhhcCCcccccccccccccccccccccchhhHHHHHHHHHHHh----ccceEEEE
Confidence 4456666666666778899998864320 011111111 11456677
Q ss_pred EEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhh
Q 025869 70 IFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTN 147 (247)
Q Consensus 70 i~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (247)
.+=|-+|. .. ..|...|..+++.+|+.. +..+++++..++.......+. ..+
T Consensus 149 W~QGEsD~-~~-----------~~Y~~~l~~li~~~R~~~~~~~lPf~~~ql~~~~~~~~~~~--------------~~~ 202 (255)
T PF03629_consen 149 WYQGESDA-NA-----------EAYRELLKALIEDWRADWGDPDLPFVIGQLSPYNGTNNEPA--------------GIN 202 (255)
T ss_dssp EE--GGGS-SC-----------TCHHHHHHHHHHHHHHHTT-TTS-EEEEE-SCCCTTCGHHC--------------CT-
T ss_pred EeCCCCCC-CH-----------HHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcccCCCCcc--------------ccc
Confidence 78888888 31 289999999999999987 788899888876544321110 012
Q ss_pred hhHHHHHHHHHHHHHh-cCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHh
Q 025869 148 EMTGVYARQCIETAKD-LGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~-~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
.....++++.++++++ .++.+++..+ ..|..|.++.+++.+++.++....+
T Consensus 203 ~~~~~vr~aQ~~~~~~~~~~~~v~t~d------------~~~~~~i~~~~~~~~G~R~a~~al~ 254 (255)
T PF03629_consen 203 EGWAEVREAQRRVAEEDPNTGMVSTSD------------LGDPDDIHPAGKRELGERLAEAALR 254 (255)
T ss_dssp TTHHHHHHHHHHHHHHSTTEEEEE-TT-------------B-TTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCEEEEEccC------------CCCCCCcCHHHHHHHHHHHHHHhhh
Confidence 2344677777788855 4566665433 2566788999999999999887764
No 48
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=95.45 E-value=0.35 Score=45.11 Aligned_cols=103 Identities=11% Similarity=0.090 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhc-CCCeeechH
Q 025869 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDL-GVPFIDLWS 173 (247)
Q Consensus 95 ~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~vD~~~ 173 (247)
...|+.+|+...++ +.+||-+..| ..+.+..... ++. ............+.++++.+++ ++.++|-++
T Consensus 807 ~~~l~~~i~~~~~~--~~~~ig~~~p-~~p~y~~t~~---fg~-----~g~~rs~a~~~~~~~~~~~~~y~~f~~~denk 875 (912)
T TIGR02171 807 MNSLKAFIDETAKK--GVKVIGTIFP-QSPGYKNTGS---FGR-----YGPRRSIAKKIIDSFKKMEKTYPHFILFDENK 875 (912)
T ss_pred HHHHHHHHHHHHhC--CCEEEEEECC-CCCCccccCc---ccc-----cCcchhhHHHHHHHHHHHHhhCCceEEEecCc
Confidence 55677888888888 6656555443 3222222111 111 1111122334555555666554 566777754
Q ss_pred HHHhcccccccccccccCCChhHHHHHHHHHHHHHHh
Q 025869 174 KMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 174 ~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
+.++ ++...+..|.-|+...|.+++.-.|=..|++
T Consensus 876 -~g~h-dy~~~ma~~~dhl~~~ga~~~t~rldsll~~ 910 (912)
T TIGR02171 876 -DGLH-DYTDDMANNSDHLSDEGAKQFTYRLDSLLKK 910 (912)
T ss_pred -CCcc-cccccccccccccchhhHHHHHHHHHHHHhc
Confidence 4444 2455778899999999999999887766654
No 49
>PF14286 DHHW: DHHW protein
Probab=94.70 E-value=0.21 Score=42.42 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHH
Q 025869 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKM 175 (247)
Q Consensus 96 ~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~ 175 (247)
+.....|..+.+..++.++.+|..|........... ... .........+.+..... .+|.+||+++.+
T Consensus 154 ~~~a~~in~~a~~l~~~~vy~mlvPta~~i~~~~~~---------~~~--~~~dq~~~i~~~~~~L~-~~I~~ID~~~~L 221 (378)
T PF14286_consen 154 DKYASAINSFAKKLPNINVYFMLVPTASEIYLPDLP---------KYA--PSYDQKQNIDYIYSMLD-KNIKFIDVYDTL 221 (378)
T ss_pred HHHHHHHHHHHHHCCCCceEEEEccChhhhcCcccc---------chh--ccccHHHHHHHHHHHhh-cCceEEehHHHH
Confidence 344455566666667888999988754322110000 000 01111122222222222 479999999999
Q ss_pred HhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 176 QETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 176 ~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
..+....-++-.| .|+|..|.-...+.+++.+
T Consensus 222 ~~hk~E~iYyrTD-HHWt~~GAyyay~~~~~~~ 253 (378)
T PF14286_consen 222 KKHKDEYIYYRTD-HHWTTLGAYYAYQEFAKSM 253 (378)
T ss_pred hhccccceEeecc-CCcccchHHHHHHHHHHHc
Confidence 9875433233445 5999999998888888765
No 50
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=88.11 E-value=3.7 Score=34.28 Aligned_cols=94 Identities=17% Similarity=0.343 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCC-CeeechHHH
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGV-PFIDLWSKM 175 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v-~~vD~~~~~ 175 (247)
.++.+++.+++. ++.++++.+|-.+.= ..+ .+. .-+.++.|.+.++.--+..|. .+-|+.+
T Consensus 296 Dlqlll~~f~ka--gadv~FV~~PvNgkW--~dY---------tG~---~k~~~q~~y~Kik~Ql~sqGF~~iaDfs~-- 357 (415)
T COG3966 296 DLQLLLDTFKKA--GADVIFVIIPVNGKW--YDY---------TGL---NKDGRQAYYKKIKSQLRSQGFTQIADFSD-- 357 (415)
T ss_pred cHHHHHHHHHhc--CCCeEEEecCCCCce--ecc---------cCc---CHHHHHHHHHHHHHHHHHcCceeehhhhc--
Confidence 588899999998 566777777643321 110 010 112344566666666666777 4555533
Q ss_pred HhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 176 QETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 176 ~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+ +...+++.|-+|+.=+|--.+=+.|.+.++..
T Consensus 358 --~-~~epyfm~DtIHlGWkGWv~~Dkai~~F~ktp 390 (415)
T COG3966 358 --D-GYEPYFMKDTIHLGWKGWVAFDKAIAKFMKTP 390 (415)
T ss_pred --c-CCCcceeccceeecchhHHHHHHHHHHHhcCC
Confidence 2 23458899999999999999999999888663
No 51
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.36 E-value=4.9 Score=35.16 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcCCCeeechHHHHhcccccccc---cccccCCCh-hHHHHHHHHHHHHHHhc
Q 025869 150 TGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKF---LSDGLHLTE-EGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 150 ~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~---~~Dg~Hp~~-~G~~~iA~~l~~~l~~~ 211 (247)
..+..+.+.++|++.+++++|....+.+.+... .+ .-|-.|.|+ -|.++.++.+...|...
T Consensus 210 RarLIArV~aiAaR~dVp~vDPt~Lm~dwGQaR-aLe~~GlDltHYTP~Fa~~iv~~~fkg~in~~ 274 (831)
T PRK15180 210 RSRLIKNVDTIAARMDIPCVNPTNLMEKWGQKR-ALEKNGDDLTHYTDMFGDAIVAAIFKGVINNT 274 (831)
T ss_pred HHHHHHHHHHHHhcCCCcccCchhhhcccchhh-cccCCCCCcccCChHHHHHHHHHHHhcccCCc
Confidence 446667788889999999999999888764321 22 345579999 78888888888877664
No 52
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=9 Score=29.68 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhC-CCCeEEEEcC
Q 025869 92 EEYGDNLKIMVQHLKRLS-PIMLVVLITP 119 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~~~-p~~~ivl~~~ 119 (247)
....+++.+.++++|.+. +++.|++++.
T Consensus 99 ~~Tfenv~rWL~ELRdhad~nivimLvGN 127 (222)
T KOG0087|consen 99 RQTFENVERWLKELRDHADSNIVIMLVGN 127 (222)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence 444559999999999987 5554444443
No 53
>KOG1388 consensus Attractin and platelet-activating factor acetylhydrolase [Signal transduction mechanisms; Defense mechanisms]
Probab=85.64 E-value=0.079 Score=40.47 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=89.1
Q ss_pred cEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEcc-CccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q 025869 35 DVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFG-ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (247)
Q Consensus 35 ~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G-~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ 113 (247)
.-.| |.++.+++....+.+.... ....++.++.+.| +|.-.. .+.+....+...+..+.+..+.++
T Consensus 52 ~~cN-Gh~~c~t~~v~~~~~N~~~--g~~c~kc~~g~~GdtN~g~c----------~~~~~~g~~~~~~~~~~~c~c~~k 118 (217)
T KOG1388|consen 52 CQCN-GHSDCNTQHVCWRCENGTT--GAHCEKCIVGFYGDTNGGKC----------QPCDCNGGASACVTLTGKCFCTTK 118 (217)
T ss_pred HHhc-CCCCcccceeeeeccCccc--cccCCceEEEEEecCCCCcc----------CHhhhcCCeeeeeccCCccccccc
Confidence 3457 9999988866554333332 2557899999999 776542 455666667778888888889999
Q ss_pred EEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhccccc-ccccccccCC
Q 025869 114 VVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQ-KKFLSDGLHL 192 (247)
Q Consensus 114 ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~-~~~~~Dg~Hp 192 (247)
+|+...-|..+.+..- .. ...+.+ .|...+. .....+.+.+..+-+.-.++.. ..-+.|-.|+
T Consensus 119 gvvgd~c~~~e~~N~~------r~----~~~kgt----cyy~l~i--d~~ftf~l~~~d~~fv~sd~~i~~~d~fd~~~~ 182 (217)
T KOG1388|consen 119 GVVGDLCPKCEVPNRY------RG----KPLKGT----CYYELLI--DGQFTFHLLQEDDGFVTSDNFISTHDMFDYLHL 182 (217)
T ss_pred eEecccCccccccccc------cc----Cccccc----eeeeeec--ccccccceeecCCCceeeccccccCCcccchhh
Confidence 9999887765543110 00 000111 2211111 1123444555544443332211 1114678999
Q ss_pred ChhHHHHHHHHHHHHHHhc
Q 025869 193 TEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 193 ~~~G~~~iA~~l~~~l~~~ 211 (247)
+.+|+.++...+++.+.+.
T Consensus 183 ~~~g~~~ic~~~~~l~~~~ 201 (217)
T KOG1388|consen 183 TNAGNTFICNPLWELYFSL 201 (217)
T ss_pred ccCCCceecchHHHHHhhh
Confidence 9999999999888877766
No 54
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.09 E-value=15 Score=28.27 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHH-hCC-CCeEEEEcC
Q 025869 50 LFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKR-LSP-IMLVVLITP 119 (247)
Q Consensus 50 ~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p-~~~ivl~~~ 119 (247)
.++++.+.+. .-.+..++||.+-.+|.. +++ +..+.|+.++. +++ ++.|++++.
T Consensus 81 QERFrslips-Y~Rds~vaviVyDit~~~-----------Sfe----~t~kWi~dv~~e~gs~~viI~LVGn 136 (221)
T KOG0094|consen 81 QERFRSLIPS-YIRDSSVAVIVYDITDRN-----------SFE----NTSKWIEDVRRERGSDDVIIFLVGN 136 (221)
T ss_pred HHHHhhhhhh-hccCCeEEEEEEeccccc-----------hHH----HHHHHHHHHHhccCCCceEEEEEcc
Confidence 3555555543 233567777766444443 233 44455555554 444 355566655
No 55
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=82.13 E-value=9.5 Score=31.06 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHHHHHHhC-CCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcC---
Q 025869 90 PVEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG--- 165 (247)
Q Consensus 90 ~~~~~~~~l~~~i~~~~~~~-p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--- 165 (247)
..+-....|..+++.+++.+ ||+++.+++= .. . |+ .......+.+.+|.+.+++++.+.+
T Consensus 37 gEelaL~~L~~lc~~I~~vY~PGa~v~I~SD-----G~--V-----f~----DllgV~D~~v~~Y~~~Lr~l~~~~~~~~ 100 (278)
T PF05141_consen 37 GEELALRRLNGLCQAIEAVYPPGAKVTIISD-----GH--V-----FN----DLLGVPDEEVWAYGEALRELAEEKGLDH 100 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT-EEEEEE-------HH--H-----HG----GGTT--HHHHHHHHHHHHHHHHHCT-TT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcEEEEEec-----Cc--E-----ec----cccCCCHHHHHHHHHHHHHHHHhcCCCe
Confidence 34446678899999998876 7998888753 11 1 11 1122234567799999999999987
Q ss_pred CCeeechHH
Q 025869 166 VPFIDLWSK 174 (247)
Q Consensus 166 v~~vD~~~~ 174 (247)
+.|+++.+.
T Consensus 101 I~f~~l~dl 109 (278)
T PF05141_consen 101 IKFFRLEDL 109 (278)
T ss_dssp EEEE-GGG-
T ss_pred EEEeCHHHh
Confidence 556666555
No 56
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.97 E-value=10 Score=28.96 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=50.1
Q ss_pred eEEEEcccccccc------cCCCcHHHHHHHHhcccCcEEecCCCCCch------HHHHHHhhhhcCCCCCCCCcEEEEE
Q 025869 4 QIVLFGDSITQQS------FGSAGWGAALADAYCRKADVLLRGYGGYNT------RWALFLLHHIFPLDNSNPPVATTIF 71 (247)
Q Consensus 4 ~i~~~GDS~~~~g------~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t------~~~~~~l~~~~~~~~~~~~d~vii~ 71 (247)
+|+++|||-+ +- |.++.|+.......+-++...+.-+.|-+. ....++++.+... .-...+-|||.
T Consensus 11 KiiliGds~V-GKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~s-yYR~ahGii~v 88 (205)
T KOG0084|consen 11 KIILIGDSGV-GKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSS-YYRGAHGIIFV 88 (205)
T ss_pred EEEEECCCCc-ChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHh-hccCCCeEEEE
Confidence 7999999988 43 223444433333333222223344444321 1112344443332 11245556665
Q ss_pred ccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEcC
Q 025869 72 FGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLITP 119 (247)
Q Consensus 72 ~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-p~~~ivl~~~ 119 (247)
+ |+ +-.+...++...+++++... .+..+++++.
T Consensus 89 y---Di------------T~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGN 122 (205)
T KOG0084|consen 89 Y---DI------------TKQESFNNVKRWIQEIDRYASENVPKLLVGN 122 (205)
T ss_pred E---Ec------------ccHHHhhhHHHHHHHhhhhccCCCCeEEEee
Confidence 4 44 33555667888888888865 3334555554
No 57
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.68 E-value=14 Score=25.54 Aligned_cols=73 Identities=12% Similarity=-0.054 Sum_probs=44.8
Q ss_pred HHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHH
Q 025869 25 ALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQ 103 (247)
Q Consensus 25 ~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~ 103 (247)
.+...+. .++++++.|.. ..... ........ +||+|.|+.- .......+.++++
T Consensus 18 ~~~~~l~~~G~~V~~lg~~-~~~~~---l~~~~~~~----~pdvV~iS~~-----------------~~~~~~~~~~~i~ 72 (119)
T cd02067 18 IVARALRDAGFEVIDLGVD-VPPEE---IVEAAKEE----DADAIGLSGL-----------------LTTHMTLMKEVIE 72 (119)
T ss_pred HHHHHHHHCCCEEEECCCC-CCHHH---HHHHHHHc----CCCEEEEecc-----------------ccccHHHHHHHHH
Confidence 3344442 45888888833 33332 33333333 8999888542 1222456788999
Q ss_pred HHHHhCC-CCeEEEEcCCCC
Q 025869 104 HLKRLSP-IMLVVLITPPPV 122 (247)
Q Consensus 104 ~~~~~~p-~~~ivl~~~~p~ 122 (247)
.+++.++ ++.|++-+.++.
T Consensus 73 ~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 73 ELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHcCCCCCeEEEECCCCC
Confidence 9999987 777777776543
No 58
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=77.01 E-value=40 Score=29.61 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=36.8
Q ss_pred CCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCC
Q 025869 61 NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (247)
Q Consensus 61 ~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~ 123 (247)
...+|++|+++==..=++ .-.++.+.+.++++++.+|+++ +-|++++..|..
T Consensus 251 D~dkPklVfFfDEAHLLF---------~da~kall~~ieqvvrLIRSKG--VGv~fvTQ~P~D 302 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLF---------NDAPKALLDKIEQVVRLIRSKG--VGVYFVTQNPTD 302 (502)
T ss_pred CCCCceEEEEEechhhhh---------cCCCHHHHHHHHHHHHHhhccC--ceEEEEeCCCCC
Confidence 456899998872111111 1245778899999999999994 458888887754
No 59
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=73.76 E-value=37 Score=25.74 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=26.8
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
..|.+++.+...|.. + ..+++..+++++...+++++++++.
T Consensus 78 ~ad~illVfD~t~~~-----------S----f~~~~~w~~~i~~~~~~~piilVGN 118 (189)
T cd04121 78 GAQGIILVYDITNRW-----------S----FDGIDRWIKEIDEHAPGVPKILVGN 118 (189)
T ss_pred CCCEEEEEEECcCHH-----------H----HHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 678888887555443 2 3344566666666667888888875
No 60
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=72.94 E-value=43 Score=27.32 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=56.7
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEE------ec-CCC---CC--chHHHHHHhhhhcCCCCCCCCcEEEE
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVL------LR-GYG---GY--NTRWALFLLHHIFPLDNSNPPVATTI 70 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~------n~-g~~---G~--~t~~~~~~l~~~~~~~~~~~~d~vii 70 (247)
++|+.+.|+.+ +|+.+.+-..-.-+.++-++... |. |.+ |. .++++...++.+.......+.|.|+-
T Consensus 1 k~vlaIqShVv-~G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davlt 79 (281)
T COG2240 1 KRILAIQSHVV-YGSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLT 79 (281)
T ss_pred CcEEEEeeeEe-ecccccHhHHHHHHHcCCceeeeceEEecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEE
Confidence 57999999999 66554443333334444222222 21 111 11 33555566666665334556777766
Q ss_pred EccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 71 FFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 71 ~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.+ .+..+-.+.+..+++.+|+.+|++ ++++.|
T Consensus 80 GY----------------lgs~~qv~~i~~~v~~vk~~~P~~-~~l~DP 111 (281)
T COG2240 80 GY----------------LGSAEQVRAIAGIVKAVKEANPNA-LYLCDP 111 (281)
T ss_pred cc----------------CCCHHHHHHHHHHHHHHhccCCCe-EEEeCC
Confidence 32 233444667999999999998885 344443
No 61
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=71.41 E-value=61 Score=27.24 Aligned_cols=147 Identities=13% Similarity=0.102 Sum_probs=80.4
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhh--hhc-
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLY--GEK- 138 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~--~~~- 138 (247)
...||.|-| +|.+...-..........+.+.+-+...++.+|+..|.++|++-...+-......-+...+. +..
T Consensus 123 G~~pd~VQV---GNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~ 199 (332)
T PF07745_consen 123 GVTPDMVQV---GNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDF 199 (332)
T ss_dssp T--ESEEEE---SSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-
T ss_pred CCCccEEEe---CccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCc
Confidence 557888887 56654332211222456778888899999999999999999888776554432233332221 111
Q ss_pred ---ccccchhhhhhHHHHHHHHHHHHHhcCCCe--eechHHHHhc--ccccccc----cccccCCChhHHHHHHHHHHHH
Q 025869 139 ---AMKLPERTNEMTGVYARQCIETAKDLGVPF--IDLWSKMQET--EGWQKKF----LSDGLHLTEEGNAVVHKEVVEV 207 (247)
Q Consensus 139 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~--vD~~~~~~~~--~~~~~~~----~~Dg~Hp~~~G~~~iA~~l~~~ 207 (247)
.......+...+..+...+..++++++-++ +.+.-++... .+....+ ...++=.|+.|++.+-+.+.+.
T Consensus 200 DviGlSyYP~w~~~l~~l~~~l~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~ 279 (332)
T PF07745_consen 200 DVIGLSYYPFWHGTLEDLKNNLNDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINA 279 (332)
T ss_dssp SEEEEEE-STTST-HHHHHHHHHHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCcchHHHHHHHHHHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHH
Confidence 111122233355666777777777776443 3333222211 1111011 3456777999999999999999
Q ss_pred HHhc
Q 025869 208 FSVA 211 (247)
Q Consensus 208 l~~~ 211 (247)
+...
T Consensus 280 v~~~ 283 (332)
T PF07745_consen 280 VKNV 283 (332)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 9883
No 62
>PRK03670 competence damage-inducible protein A; Provisional
Probab=70.24 E-value=16 Score=29.27 Aligned_cols=69 Identities=17% Similarity=0.060 Sum_probs=42.5
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
|+--|+.+||-+. .|.-...-...+.+.+. .++++....+.+..-....+.+...... ..|+||+..|+
T Consensus 1 m~a~Ii~iGdEll-~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~----~~DlVIttGGl 70 (252)
T PRK03670 1 MFAEIITVGDELL-TGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSR----KPEVLVISGGL 70 (252)
T ss_pred CEEEEEEeCCcCc-CCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhC----CCCEEEECCCc
Confidence 5667999999998 44332222334444432 2367777777776666555555554432 57999998664
No 63
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=69.05 E-value=3.7 Score=28.53 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=39.2
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
++|.++|.|... ..|...+.+.+. .+++++-..-.+..... ...+..+.+ ...++|++++..
T Consensus 1 ksiAVvGaS~~~-----~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G-~~~y~sl~e--~p~~iDlavv~~--------- 63 (116)
T PF13380_consen 1 KSIAVVGASDNP-----GKFGYRVLRNLKAAGYEVYPVNPKGGEILG-IKCYPSLAE--IPEPIDLAVVCV--------- 63 (116)
T ss_dssp -EEEEET--SST-----TSHHHHHHHHHHHTT-EEEEESTTCSEETT-EE-BSSGGG--CSST-SEEEE-S---------
T ss_pred CEEEEEcccCCC-----CChHHHHHHHHHhCCCEEEEECCCceEECc-EEeeccccC--CCCCCCEEEEEc---------
Confidence 479999999863 256555555543 22344432222211110 011222221 124889999853
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
+.+ .+.++++++.+. +++-+|+.+
T Consensus 64 --------~~~----~~~~~v~~~~~~--g~~~v~~~~ 87 (116)
T PF13380_consen 64 --------PPD----KVPEIVDEAAAL--GVKAVWLQP 87 (116)
T ss_dssp ---------HH----HHHHHHHHHHHH--T-SEEEE-T
T ss_pred --------CHH----HHHHHHHHHHHc--CCCEEEEEc
Confidence 333 455677777777 555677766
No 64
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=66.69 E-value=21 Score=28.21 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=36.7
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN 75 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N 75 (247)
|||.|++|||++-. .-.....+.....-.+...|-|-..-..+.-....... +.-+.|+.+|.-
T Consensus 221 lKpdV~fFGdnvn~------dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~-----k~pi~IvNIGpT 284 (305)
T KOG2683|consen 221 LKPDVTFFGDNVNK------DKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEK-----KKPIAIVNIGPT 284 (305)
T ss_pred cCCceEEecCCCCh------HHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhh-----cCcEEEEecCCc
Confidence 68999999999984 23334444443222455666655444444333334333 455677777754
No 65
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=65.76 E-value=27 Score=28.08 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHH
Q 025869 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSK 174 (247)
Q Consensus 95 ~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~ 174 (247)
.+.+.++++.++.. +. +|+.+. . .....+.+++.|++.+++++|+...
T Consensus 39 ~~~~~~il~~i~~~--~~-iV~~Tl--------------------------v---~~~lr~~l~~~~~~~~i~~~Dll~~ 86 (255)
T PF03618_consen 39 EEQLDEILEEIKEE--NA-IVFYTL--------------------------V---DPELREYLEEFCREHGIPCVDLLGP 86 (255)
T ss_pred HHHHHHHHHHHhcc--CC-EEEEeC--------------------------C---CHHHHHHHHHHHHhcCCCEEeccHH
Confidence 45677888888774 22 666665 1 1255666788899999999999987
Q ss_pred HHhc
Q 025869 175 MQET 178 (247)
Q Consensus 175 ~~~~ 178 (247)
+...
T Consensus 87 ~l~~ 90 (255)
T PF03618_consen 87 LLSA 90 (255)
T ss_pred HHHH
Confidence 7653
No 66
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=64.60 E-value=35 Score=24.22 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=49.2
Q ss_pred EecCCCCCchHHHHHHhhhh-cCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEE
Q 025869 37 LLRGYGGYNTRWALFLLHHI-FPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVV 115 (247)
Q Consensus 37 ~n~g~~G~~t~~~~~~l~~~-~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~iv 115 (247)
.-.|.+|..-......+.+. ... ..+-+.|-.+++++|+-.. -..++|...|...|...-.+-|..-+|
T Consensus 57 SfHG~tGtGKn~v~~liA~~ly~~--G~~S~~V~~f~~~~hFP~~--------~~v~~Yk~~L~~~I~~~v~~C~rslFI 126 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRLIAEHLYKS--GMKSPFVHQFIATHHFPHN--------SNVDEYKEQLKSWIRGNVSRCPRSLFI 126 (127)
T ss_pred EeecCCCCcHHHHHHHHHHHHHhc--ccCCCceeeecccccCCCc--------hHHHHHHHHHHHHHHHHHHhCCcCeee
Confidence 35677887666555555443 332 4577889999999999743 378899999999998888877765443
No 67
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=62.79 E-value=82 Score=25.55 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=52.6
Q ss_pred CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q 025869 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (247)
Q Consensus 34 ~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ 113 (247)
.-++|.++.|... .++++.++ +||+++|....++--..-.....-.+. ..+..+=..++..+++.+..+
T Consensus 65 aIVv~q~vpGt~~-----af~kIkek----RpDIl~ia~~~~EDp~~i~~~aDi~~~-~D~~~~G~~i~~~Ak~mGAkt- 133 (275)
T PF12683_consen 65 AIVVSQAVPGTAE-----AFRKIKEK----RPDILLIAGEPHEDPEVISSAADIVVN-PDEISRGYTIVWAAKKMGAKT- 133 (275)
T ss_dssp EEEEE-SS---HH-----HHHHHHHH-----TTSEEEESS--S-HHHHHHHSSEEEE---HHHHHHHHHHHHHHTT-S--
T ss_pred EEEEeCCCcchHH-----HHHHHHhc----CCCeEEEcCCCcCCHHHHhhccCeEec-cchhhccHHHHHHHHHcCCce-
Confidence 4466788887322 34455544 899999987766421000000000011 224455567888888885443
Q ss_pred EEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHH
Q 025869 114 VVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSK 174 (247)
Q Consensus 114 ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~ 174 (247)
+|.++-|- . ...+.+.+..+.+++.|++.|+.|+....+
T Consensus 134 FVh~sfpr-h---------------------ms~~~l~~Rr~~M~~~C~~lGi~fv~~taP 172 (275)
T PF12683_consen 134 FVHYSFPR-H---------------------MSYELLARRRDIMEEACKDLGIKFVEVTAP 172 (275)
T ss_dssp EEEEEETT-G---------------------GGSHHHHHHHHHHHHHHHHCT--EEEEEE-
T ss_pred EEEEechh-h---------------------cchHHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 44333311 0 112355677788899999999999988643
No 68
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=62.69 E-value=47 Score=28.43 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHh---cCCCeeechH
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKD---LGVPFIDLWS 173 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~v~~vD~~~ 173 (247)
.=+.+++++++++-..-+.+...||..-...... ++... ..........++|...+.++++. .||.|=-+ .
T Consensus 105 gQrwfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~----~g~~~-~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~I-s 178 (384)
T PF14587_consen 105 GQRWFLKAAKERGVNIFEAFSNSPPWWMTKNGSA----SGGDD-GSDNLKPDNYDAFADYLADVVKHYKKWGINFDYI-S 178 (384)
T ss_dssp HHHHHHHHHHHTT---EEEE-SSS-GGGSSSSSS----B-S-S-SS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEE-E
T ss_pred HHHHHHHHHHHcCCCeEEEeecCCCHHHhcCCCC----CCCCc-cccccChhHHHHHHHHHHHHHHHHHhcCCcccee-C
Confidence 4456888999886554444555555321110000 01000 01112233455666666666654 46543222 3
Q ss_pred HHHhcccccccccccccCCChhHHHHHHHHHHHHHHhcCCCCC
Q 025869 174 KMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVAGLSSE 216 (247)
Q Consensus 174 ~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~~~~~~ 216 (247)
+++++.-.-..-...|.|.+..-...+.+.|.+.|++.++...
T Consensus 179 P~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~ 221 (384)
T PF14587_consen 179 PFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK 221 (384)
T ss_dssp --S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-E
T ss_pred CcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce
Confidence 4554421112235688999999999999999999999976654
No 69
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=62.21 E-value=48 Score=25.41 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=40.3
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP- 110 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p- 110 (247)
.++++++.|.. ..... ........ +||+|.++.- .......+.++++.+++.++
T Consensus 109 ~G~~vi~lG~~-~p~~~---l~~~~~~~----~~d~v~lS~~-----------------~~~~~~~~~~~i~~lr~~~~~ 163 (201)
T cd02070 109 NGFEVIDLGRD-VPPEE---FVEAVKEH----KPDILGLSAL-----------------MTTTMGGMKEVIEALKEAGLR 163 (201)
T ss_pred CCCEEEECCCC-CCHHH---HHHHHHHc----CCCEEEEecc-----------------ccccHHHHHHHHHHHHHCCCC
Confidence 44888888843 23332 23333333 8898888641 12224578999999999977
Q ss_pred -CCeEEEEcCC
Q 025869 111 -IMLVVLITPP 120 (247)
Q Consensus 111 -~~~ivl~~~~ 120 (247)
+++|++-+.+
T Consensus 164 ~~~~i~vGG~~ 174 (201)
T cd02070 164 DKVKVMVGGAP 174 (201)
T ss_pred cCCeEEEECCc
Confidence 7777777664
No 70
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=61.25 E-value=12 Score=26.91 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=41.6
Q ss_pred EEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 5 IVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 5 i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
|+.+||.+. .|.....-...+.+.+. .++++...++.........+.+.+... +.|+||...|+
T Consensus 2 Ii~~GdEl~-~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-----~~D~VittGG~ 66 (144)
T PF00994_consen 2 IISTGDELL-SGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALD-----RADLVITTGGT 66 (144)
T ss_dssp EEEECHHHH-TTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHH-----TTSEEEEESSS
T ss_pred EEEECccCc-CCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhc-----cCCEEEEcCCc
Confidence 788999999 55443333444555443 236677777777777766666666554 35999998765
No 71
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.68 E-value=46 Score=22.03 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=43.3
Q ss_pred eEEEEcc--cccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 4 QIVLFGD--SITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 4 ~i~~~GD--S~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
+|+++|. .... .+...+.+ ++ ......|..+...... ..++..+. ++|+||+..+...-.
T Consensus 1 ~vliVGG~~~~~~------~~~~~~~~-~G--~~~~~hg~~~~~~~~~-~~l~~~i~-----~aD~VIv~t~~vsH~--- 62 (97)
T PF10087_consen 1 SVLIVGGREDRER------RYKRILEK-YG--GKLIHHGRDGGDEKKA-SRLPSKIK-----KADLVIVFTDYVSHN--- 62 (97)
T ss_pred CEEEEcCCcccHH------HHHHHHHH-cC--CEEEEEecCCCCccch-hHHHHhcC-----CCCEEEEEeCCcChH---
Confidence 4788887 4442 34434333 44 3444444433222211 23444443 799999987544432
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEc
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~ 118 (247)
.+..+-+.+++. +.++++..
T Consensus 63 ---------------~~~~vk~~akk~--~ip~~~~~ 82 (97)
T PF10087_consen 63 ---------------AMWKVKKAAKKY--GIPIIYSR 82 (97)
T ss_pred ---------------HHHHHHHHHHHc--CCcEEEEC
Confidence 355666677777 66677664
No 72
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=60.58 E-value=18 Score=26.07 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+.|+|++..|.--.- + ....+.+ .+-++++.+.+.+..|++.+++++.|
T Consensus 67 ~~~aDivvitag~~~~~-----g---~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 67 LKDADIVVITAGVPRKP-----G---MSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp GTTESEEEETTSTSSST-----T---SSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred cccccEEEEeccccccc-----c---ccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 34678888887763110 0 0122333 34467788888888999877777653
No 73
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=59.11 E-value=30 Score=25.88 Aligned_cols=65 Identities=15% Similarity=0.000 Sum_probs=40.0
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
.|+.+||-+. .|.-...-...|...+. .++++......+.......+.+.+... ..|+||+..|+
T Consensus 3 ~Ii~~GdEl~-~G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~-----~~dlVIttGG~ 68 (170)
T cd00885 3 EIIAIGDELL-SGQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE-----RADLVITTGGL 68 (170)
T ss_pred EEEEECcccc-CCeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-----CCCEEEECCCC
Confidence 5889999998 45333333344454442 236666666666666655555555543 57998888654
No 74
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=57.40 E-value=43 Score=26.94 Aligned_cols=67 Identities=18% Similarity=0.035 Sum_probs=46.3
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHh-cccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~-~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
+--|+++||=+- .|.--..=...|++.+ ..++++.-.-..|..-....+.+..... ++|+||+..|.
T Consensus 3 ~a~iI~vG~ElL-~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~-----r~D~vI~tGGL 70 (255)
T COG1058 3 KAEIIAVGDELL-SGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASE-----RADVVITTGGL 70 (255)
T ss_pred eEEEEEEcccee-cCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHh-----CCCEEEECCCc
Confidence 446899999998 5543333344556555 3458888888888887766666666554 59999998764
No 75
>PTZ00344 pyridoxal kinase; Provisional
Probab=57.16 E-value=1.1e+02 Score=25.10 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=14.1
Q ss_pred CCceEEEEcccccccccCC
Q 025869 1 MRPQIVLFGDSITQQSFGS 19 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~ 19 (247)
|.|+|+.+.|+.. .|+.+
T Consensus 3 ~~~~vl~i~~~~~-~G~~G 20 (296)
T PTZ00344 3 MEKKVLSIQSHVT-HGYVG 20 (296)
T ss_pred CCCeEEEEcceee-ccccc
Confidence 5789999999999 55443
No 76
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=57.15 E-value=69 Score=22.90 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=27.1
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP-IMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p-~~~ivl~~~ 119 (247)
+.|.+++.+-.||.. -..++..+++.++...+ .+.+++++.
T Consensus 71 ~~~~~ii~fd~~~~~---------------S~~~~~~~~~~i~~~~~~~~~iivvg~ 112 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEE---------------SFENLKKWLEEIQKYKPEDIPIIVVGN 112 (162)
T ss_dssp TESEEEEEEETTBHH---------------HHHTHHHHHHHHHHHSTTTSEEEEEEE
T ss_pred ccccccccccccccc---------------cccccccccccccccccccccceeeec
Confidence 678888887555542 23446677777776665 577777765
No 77
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=56.46 E-value=23 Score=24.00 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
+.|.+||.++++.++. .++..|-++.-+.
T Consensus 4 ~~Fv~Nm~~Iv~~l~~-~~~~~I~iv~~~D 32 (103)
T PF06935_consen 4 PEFVENMKKIVERLRN-DPGEPIEIVDGPD 32 (103)
T ss_pred HHHHHHHHHHHHHHHH-CCCCCEEEEECcC
Confidence 6789999999999986 4577788887663
No 78
>PRK00955 hypothetical protein; Provisional
Probab=55.98 E-value=73 Score=29.30 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=57.4
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc-ccccc-
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN-DAALF- 80 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N-D~~~~- 80 (247)
-|++-||...+.. .-+...+.+.+. .++.|-..+...|... .-+.++. +|+++++-.++| |....
T Consensus 16 ~i~v~gdayvdhp---~fg~a~i~r~L~~~G~~v~ii~qp~~~~~---~~~~~~g------~P~l~~~vs~g~~dsmv~~ 83 (620)
T PRK00955 16 FILVTGDAYVDHP---SFGTAIIGRVLEAEGFRVGIIAQPNWRDL---EDFKKLG------KPRLFFLVSAGNMDSMVNH 83 (620)
T ss_pred EEEEeCcccccCC---ccHHHHHHHHHHHCCCEEEEecCCCcCCh---HHHHhhC------CCcEEEEeccccHHHHHhh
Confidence 3789999999753 345566666663 4477767777766533 2233333 689987644433 42111
Q ss_pred ----C--------CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 81 ----G--------RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 81 ----~--------~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
. .+++..+..++. +.-.+.+.+|+.+|++.||+-++-
T Consensus 84 yt~~~~~r~~d~ytpgg~~~~rpdr---a~i~y~~~ik~~~p~~~IvlGG~e 132 (620)
T PRK00955 84 YTASKKLRSKDAYSPGGKMGLRPDR---ATIVYCNKIKEAYPDVPIIIGGIE 132 (620)
T ss_pred cchhhhcccccccCCCCccCCCcch---HHHHHHHHHHHHCCCCcEEeCChh
Confidence 0 112223333333 233455667777889877776663
No 79
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=55.84 E-value=56 Score=21.49 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=27.9
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.||++++.+...+.. ..++++.++...+.+++++++.
T Consensus 43 ~~d~iiid~~~~~~~-------------------~~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 43 PPDLIIIDLELPDGD-------------------GLELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp TESEEEEESSSSSSB-------------------HHHHHHHHHHHTTTSEEEEEES
T ss_pred CceEEEEEeeecccc-------------------ccccccccccccccccEEEecC
Confidence 699999976555532 3467777788778899999986
No 80
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=55.00 E-value=1.1e+02 Score=24.77 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=42.9
Q ss_pred cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q 025869 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (247)
Q Consensus 33 ~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~ 112 (247)
.+.+.+-|++|.+... .+.+.++ +-++|. +|-|-...+. .-+.++.++...++++.+.++++
T Consensus 7 ~IgvFDSGVGGLsVlr---ei~~~LP-----~e~~iY--~~D~a~~PYG------~ks~e~I~~~~~~i~~~l~~~~i-- 68 (269)
T COG0796 7 PIGVFDSGVGGLSVLR---EIRRQLP-----DEDIIY--VGDTARFPYG------EKSEEEIRERTLEIVDFLLERGI-- 68 (269)
T ss_pred eEEEEECCCCcHHHHH---HHHHHCC-----CCcEEE--EecCCCCCCC------CCCHHHHHHHHHHHHHHHHHcCC--
Confidence 3668899999976652 2233332 234444 4444333322 24678889999999999999964
Q ss_pred eEEEEcC
Q 025869 113 LVVLITP 119 (247)
Q Consensus 113 ~ivl~~~ 119 (247)
+++++..
T Consensus 69 k~lVIAC 75 (269)
T COG0796 69 KALVIAC 75 (269)
T ss_pred CEEEEec
Confidence 4555544
No 81
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=54.95 E-value=1.1e+02 Score=24.51 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=42.9
Q ss_pred cEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHH-HhCCCCe
Q 025869 35 DVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLK-RLSPIML 113 (247)
Q Consensus 35 ~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~p~~~ 113 (247)
.+.+-|+||.+... .+.+.. |+.=+|.+|-|-...+. .-+.++....+.++++.+. +. ++.
T Consensus 2 gvfDSGiGGltv~~---~l~~~~-------p~~~~iy~~D~~~~PYG------~ks~~~i~~~~~~~~~~L~~~~--g~d 63 (251)
T TIGR00067 2 GVFDSGVGGLSVLK---EIRKQL-------PKEHYIYVGDTKRFPYG------EKSPEFILEYVLELLTFLKERH--NIK 63 (251)
T ss_pred EEEeCCccHHHHHH---HHHHHC-------CCCCEEEEecCCCCCCC------CCCHHHHHHHHHHHHHHHHHhC--CCC
Confidence 46778888866653 333333 33334555555554332 2477888999999999998 77 566
Q ss_pred EEEEcCC
Q 025869 114 VVLITPP 120 (247)
Q Consensus 114 ivl~~~~ 120 (247)
.+++...
T Consensus 64 ~ivIaCN 70 (251)
T TIGR00067 64 LLVVACN 70 (251)
T ss_pred EEEEeCc
Confidence 7776553
No 82
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=54.93 E-value=50 Score=27.29 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcch
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDG 126 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~ 126 (247)
...-++.++.+.|..+++..|++++++..++..
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKSt 148 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKST 148 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHH
Confidence 344455566667777789999999998776654
No 83
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=54.89 E-value=42 Score=22.93 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=42.2
Q ss_pred HHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHH
Q 025869 24 AALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMV 102 (247)
Q Consensus 24 ~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i 102 (247)
..++..+.. ++++...+..-.. . +..+.+.+. +||+|.+..-. ......+.+++
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~-~---~l~~~~~~~----~pd~V~iS~~~-----------------~~~~~~~~~l~ 72 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPP-E---ELVEALRAE----RPDVVGISVSM-----------------TPNLPEAKRLA 72 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-H-H---HHHHHHHHT----TCSEEEEEESS-----------------STHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCCCCH-H---HHHHHHhcC----CCcEEEEEccC-----------------cCcHHHHHHHH
Confidence 344444432 4666555443211 2 233333333 89998885421 11234567888
Q ss_pred HHHHHhCCCCeEEEEcCC
Q 025869 103 QHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 103 ~~~~~~~p~~~ivl~~~~ 120 (247)
+.+|+.+|++++++-++.
T Consensus 73 ~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 73 RAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHTTCTTSEEEEEESS
T ss_pred HHHHhcCCCCEEEEECCc
Confidence 889999999988888874
No 84
>PRK05086 malate dehydrogenase; Provisional
Probab=54.21 E-value=46 Score=27.61 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|..--. .....+.+.. -++.+++.+++.+|++.+++++.|
T Consensus 68 ~~~DiVIitaG~~~~~--------~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 68 EGADVVLISAGVARKP--------GMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCEEEEcCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 3579999988874221 0124455555 688889999999888755555544
No 85
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=52.90 E-value=40 Score=25.18 Aligned_cols=62 Identities=21% Similarity=0.176 Sum_probs=31.3
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCC-chHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGY-NTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~-~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
.+|+++|++--.. ......|.+.++ ++.+.. ...|. ........+..+... +||+|++.+|.
T Consensus 49 ~~ifllG~~~~~~----~~~~~~l~~~yP-~l~ivg-~~~g~f~~~~~~~i~~~I~~~----~pdiv~vglG~ 111 (172)
T PF03808_consen 49 KRIFLLGGSEEVL----EKAAANLRRRYP-GLRIVG-YHHGYFDEEEEEAIINRINAS----GPDIVFVGLGA 111 (172)
T ss_pred CeEEEEeCCHHHH----HHHHHHHHHHCC-CeEEEE-ecCCCCChhhHHHHHHHHHHc----CCCEEEEECCC
Confidence 4788898876531 122334444443 222221 12232 222333444455444 89999998753
No 86
>PLN00135 malate dehydrogenase
Probab=52.12 E-value=55 Score=27.17 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=33.8
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHh-CCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRL-SPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~-~p~~~ivl~~~~ 120 (247)
.+.|+|||..|...-.. ....+.+ .+-++.+.+.+.++ +|++.+++++.|
T Consensus 57 ~daDiVVitAG~~~k~g--------~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNP 110 (309)
T PLN00135 57 KGVNIAVMVGGFPRKEG--------MERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANP 110 (309)
T ss_pred CCCCEEEEeCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 36899999998864421 1123333 34477888888885 899988888754
No 87
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=51.93 E-value=31 Score=27.57 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHH
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQ 176 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~ 176 (247)
.++..++.++....+..+|++...-.-.... ........+....+.++++|+++++++|-+...-.
T Consensus 116 ~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~--------------~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr 181 (259)
T PF03796_consen 116 DIESKIRRLKREGKKVDVVFIDYLQLLKSED--------------SSDNRRQEIGEISRELKALAKELNIPVIALSQLNR 181 (259)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC--------------SSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSG
T ss_pred HHHHHHHHHHhhccCCCEEEechHHHhcCCC--------------CCCCHHHHHHHHHHHHHHHHHHcCCeEEEccccCh
Confidence 4455555555554467788886643211110 01112234667788899999999999987655433
No 88
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=51.87 E-value=1.5e+02 Score=25.12 Aligned_cols=205 Identities=16% Similarity=0.131 Sum_probs=107.8
Q ss_pred ceEEEEcccccccccCC--------------CcHHHHHHHHhcccCcEEecCCCCCch-----HHHHHHhhhhcCCCCCC
Q 025869 3 PQIVLFGDSITQQSFGS--------------AGWGAALADAYCRKADVLLRGYGGYNT-----RWALFLLHHIFPLDNSN 63 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~--------------~~~~~~l~~~~~~~~~v~n~g~~G~~t-----~~~~~~l~~~~~~~~~~ 63 (247)
-||+.+=|.+. .|.++ -+-...|...++...+++-.=++|.+. ......+..+++ ..
T Consensus 4 ~kvv~yiNQff-agiGGee~Ad~~p~~~~g~vGp~~~l~~~l~~~~eIv~TiiCGDnyf~en~eea~~~i~~mv~---~~ 79 (349)
T PF07355_consen 4 MKVVHYINQFF-AGIGGEEKADTPPEVREGPVGPGLMLEKALKDDAEIVATIICGDNYFNENKEEALKKILEMVK---KL 79 (349)
T ss_pred eEEEEEehhhh-cccCccccCCCCCccccCCCChHHHHHHHhcCCCEEEEEEEECcchhhhCHHHHHHHHHHHHH---hc
Confidence 37777777777 55442 144667788887666777666666533 334444444443 46
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccc
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLP 143 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~ 143 (247)
+||+||..-.. +..+|-..-..+.+.+.+.. +++.| ..+.+=+. ....+-...|-.+.....
T Consensus 80 ~pD~viaGPaF---------------nagrYG~acg~v~~aV~e~~-~IP~v-taM~~ENp-gv~~yk~~~~Ivkt~~~a 141 (349)
T PF07355_consen 80 KPDVVIAGPAF---------------NAGRYGVACGEVAKAVQEKL-GIPVV-TAMYEENP-GVEMYKKDVYIVKTKKSA 141 (349)
T ss_pred CCCEEEEcCCc---------------CCchHHHHHHHHHHHHHHhh-CCCEE-EEecccCh-hHHHHhhccEEEECCCcc
Confidence 89998875333 34445555666666666553 44333 33322111 111111111222222223
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 025869 144 ERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVAGLSSEEMPYDFP 223 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~~~~~~~~p~~~p 223 (247)
..+++.+..+....+++++...+.--.-...+. .+... .+.....|.++.-+.|.+.|+.. +-......|
T Consensus 142 ~gm~~al~~ma~l~~kl~~ge~i~~~~~egy~~--~g~r~-----~~~~~~~~a~Rav~ml~~kl~ge---~f~tE~pmp 211 (349)
T PF07355_consen 142 AGMRDALPAMAKLAKKLAKGEEIGSPEEEGYFP--RGIRK-----NVFHEKRGAERAVDMLLKKLKGE---PFETEYPMP 211 (349)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCcccccccc--CccEE-----eeccccchHHHHHHHHHHHhCCC---cccccCcCC
Confidence 345555666666666655543221110000000 00111 12234558888888888877664 445556778
Q ss_pred CCCCCCCCCccchHHH
Q 025869 224 HHSQIDAKNPEKTFQQ 239 (247)
Q Consensus 224 ~~~~~~~~~~~~~~~~ 239 (247)
.+..|+++-|.+++..
T Consensus 212 ~fd~v~p~p~vKdLs~ 227 (349)
T PF07355_consen 212 VFDRVPPAPPVKDLSK 227 (349)
T ss_pred CCCCCCCCCCCCcHHH
Confidence 8889998888877654
No 89
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=51.83 E-value=17 Score=26.06 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccC------CChhHHHHHHH
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLH------LTEEGNAVVHK 202 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~H------p~~~G~~~iA~ 202 (247)
.....+.++++++|++.++.++.+ ..++|++| |...++.++-.
T Consensus 30 ~~~~~l~~~l~~~~~~~~~eI~a~------------~v~pdHVHlli~~pp~~~~~~~~~~ 78 (136)
T COG1943 30 EVLNLLRSILREVAEQKNFEILAM------------EVMPDHVHLLITLPPKDSVSSIVNR 78 (136)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEE------------EecCCEEEEEEecCCCCCHHHHHHH
Confidence 367789999999999999888776 33556665 34555555543
No 90
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=51.13 E-value=56 Score=28.67 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCCeeec
Q 025869 153 YARQCIETAKDLGVPFIDL 171 (247)
Q Consensus 153 ~~~~~~~~a~~~~v~~vD~ 171 (247)
..+.+.++|++.|+.++=-
T Consensus 109 ~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 109 LEQELVEIARKYGMRLLGP 127 (447)
T ss_pred HHHHHHHHHHHcCCEEEec
Confidence 3456777888888877643
No 91
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=51.13 E-value=85 Score=24.69 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=42.3
Q ss_pred HHHHHhhhhcCCCCCCCCcEEEEEc-----c-CccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 48 WALFLLHHIFPLDNSNPPVATTIFF-----G-ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~d~vii~~-----G-~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
...+.++++.. +-|++||.. | .||+..+...-.+--.+.+.--+.+++|.+.+++..++.-|+++.-
T Consensus 104 ~~f~klK~iW~-----~rdilIVEG~~sR~GvgnDLFdnaksI~rIicPsknAf~~~d~I~~~i~~~~~~~LiLiaLG 176 (225)
T PF08759_consen 104 RYFEKLKQIWK-----DRDILIVEGEKSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIKKYAKDKLILIALG 176 (225)
T ss_pred HHHHHHHHHhC-----CCcEEEEecCCeecCCCchhhhCccceEEEECCchhhHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 33456666665 468888873 2 3787755433233334566667789999999998877654444444
No 92
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=50.83 E-value=42 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
...++++.+|+.+|+++|++-++.+
T Consensus 54 ~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 54 EALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred HHHHHHHHHHHHCCCCEEEECCcch
Confidence 5778889999999998888887744
No 93
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=50.48 E-value=89 Score=26.19 Aligned_cols=67 Identities=12% Similarity=-0.177 Sum_probs=33.7
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
++|.++.+... +|. .+...+.+.+. .++++.....--..+..+...+.++... +||+|++.....|.
T Consensus 141 ~kvaiv~~~~~-~g~---~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~----~pd~V~~~~~~~~~ 208 (351)
T cd06334 141 KKIALVYHDSP-FGK---EPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRS----GPDYVILWGWGVMN 208 (351)
T ss_pred CeEEEEeCCCc-cch---hhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHc----CCCEEEEecccchH
Confidence 47777777544 332 23333333332 1244443322222233344455565544 89999987655554
No 94
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=50.48 E-value=69 Score=22.62 Aligned_cols=66 Identities=15% Similarity=-0.019 Sum_probs=36.0
Q ss_pred EEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc
Q 025869 5 IVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN 75 (247)
Q Consensus 5 i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N 75 (247)
|+.+||-+...+.....-...+.+.+. .++++..............+.+.++.. ..|+|++..|+=
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~-----~~dliittGG~g 68 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALE-----RADLVITTGGTG 68 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHh-----CCCEEEEcCCCC
Confidence 678999988543221222233444332 225555555555555555555555543 589888876643
No 95
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=50.38 E-value=59 Score=27.03 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=33.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+|||..|...-.. ....+.+.. -++++++.+++.+|++.+++++.|
T Consensus 72 ~~adivIitag~~~k~g--------~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP 124 (315)
T PRK00066 72 KDADLVVITAGAPQKPG--------ETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNP 124 (315)
T ss_pred CCCCEEEEecCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 46799999888754321 112333333 467778888999999888777754
No 96
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=49.51 E-value=44 Score=27.72 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=33.5
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
..+.|+|||..|..=- + .....+.+.. -++.+.+.+.+.+|++.+++++.|-
T Consensus 66 ~~daDivvitaG~~~k-----~---g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 66 LKGADVVVIPAGVPRK-----P---GMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred cCCCCEEEEeCCCCCC-----C---CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 4467999998886411 1 1123344443 4667778888889999777777653
No 97
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=49.41 E-value=59 Score=24.08 Aligned_cols=65 Identities=12% Similarity=-0.032 Sum_probs=37.4
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+.+||+... .+. .-...+...+. .++++...++-...-....+.+.+... ..+.|+|++..|+
T Consensus 8 ~vit~~d~~~~-~~d--~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~---~~~~DlVIttGGt 73 (163)
T TIGR02667 8 AILTVSDTRTE-EDD--TSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIA---DPDVQVILITGGT 73 (163)
T ss_pred EEEEEeCcCCc-cCC--CcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEECCCc
Confidence 46779998764 221 11223333332 226677777776666655566655542 1268999888664
No 98
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=49.17 E-value=53 Score=24.46 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=29.8
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecC-CCCCch-HHHHHHhhhhcCCCCCCCCcEEEEEcc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRG-YGGYNT-RWALFLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g-~~G~~t-~~~~~~l~~~~~~~~~~~~d~vii~~G 73 (247)
.+|+++|.+-... ......+.+.++ ++.+ .| ..|.-. ....+....+.. .+||+|++.+|
T Consensus 47 ~~v~llG~~~~~~----~~~~~~l~~~yp-~l~i--~g~~~g~~~~~~~~~i~~~I~~----~~pdiv~vglG 108 (171)
T cd06533 47 LRVFLLGAKPEVL----EKAAERLRARYP-GLKI--VGYHHGYFGPEEEEEIIERINA----SGADILFVGLG 108 (171)
T ss_pred CeEEEECCCHHHH----HHHHHHHHHHCC-CcEE--EEecCCCCChhhHHHHHHHHHH----cCCCEEEEECC
Confidence 4788888776531 112223444443 2222 23 333322 222234444444 48999999875
No 99
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.07 E-value=1.2e+02 Score=23.46 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeee
Q 025869 92 EEYGDNLKIMVQHLKRLSP-IMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFID 170 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~~~p-~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD 170 (247)
+.-..++...++.+.++.+ ++.++|++.---... ....-.+.-+++|.++|+.|.-
T Consensus 97 e~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-----------------------~R~V~~e~ge~lA~e~G~~F~E 153 (207)
T KOG0078|consen 97 EKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-----------------------KRQVSKERGEALAREYGIKFFE 153 (207)
T ss_pred hHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-----------------------cccccHHHHHHHHHHhCCeEEE
Confidence 4445677788888888875 677777766110000 0001113345668999999987
Q ss_pred chHHH
Q 025869 171 LWSKM 175 (247)
Q Consensus 171 ~~~~~ 175 (247)
.....
T Consensus 154 tSAk~ 158 (207)
T KOG0078|consen 154 TSAKT 158 (207)
T ss_pred ccccC
Confidence 75543
No 100
>PRK06298 type III secretion system protein; Validated
Probab=48.73 E-value=46 Score=28.26 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHH-----hCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCC
Q 025869 92 EEYGDNLKIMVQHLKR-----LSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGV 166 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~-----~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v 166 (247)
.+.+...+++-+++.. .-|++.+|++.|..+.-+-. |.....+-..-..+-.+.....++++|+++||
T Consensus 232 P~iK~rrR~~~re~~~~~m~~~V~~AdVVItNPTH~AVALk-------Yd~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~V 304 (356)
T PRK06298 232 PEIKGRRRQIAQEIAYEDTSSQVKHASAVVSNPKDIAVAIG-------YMPEKYKAPWIIAMGINLRAKRIIAEAEKYGV 304 (356)
T ss_pred HHHHHHHHHHHHHHHHhHHhhcCCCCcEEEECCCceEEEeE-------eCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCC
Confidence 3355555555444433 34889999998875422110 11000011111233345778889999999999
Q ss_pred CeeechHHHHhcccccccccccccCC-ChhHHHHHHHHHHHHHHh
Q 025869 167 PFIDLWSKMQETEGWQKKFLSDGLHL-TEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 167 ~~vD~~~~~~~~~~~~~~~~~Dg~Hp-~~~G~~~iA~~l~~~l~~ 210 (247)
+++.--..-..-. ...+--++ .+.=|+.+|+.+.-..+-
T Consensus 305 Piven~pLARaLy-----~~~evg~~IP~ely~AVA~IL~~v~~l 344 (356)
T PRK06298 305 PIMRNVPLAHQLL-----DEGKELKFIPESTYEAIGEILLYITSL 344 (356)
T ss_pred CEEeCHHHHHHHH-----HcCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 9987644332210 01111111 345677888766554443
No 101
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=48.56 E-value=40 Score=30.96 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHH-----hCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCC
Q 025869 92 EEYGDNLKIMVQHLKR-----LSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGV 166 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~-----~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v 166 (247)
.+.+...+++-+++.. .-|++.+|++.|....=+-+ |.....+-..-..+-.+.....+++.|+++||
T Consensus 494 P~iK~r~R~~~re~~~~~m~~~V~~AdvVitNPTH~AVAL~-------Y~~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~V 566 (609)
T PRK12772 494 PQIKAKIKQKQREMAMQRMMQEVPKATVVVTNPTHIAVALK-------YEEGKDEAPKVVAKGADYVALKIKEIAKENDV 566 (609)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcEEEECCCceEEEeE-------eCCCCCCCCEEEEeeCcHHHHHHHHHHHHCCC
Confidence 3455555555555543 34889999998875422110 11110111112333445778889999999999
Q ss_pred CeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHH
Q 025869 167 PFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 167 ~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
+++.--..-..-.. ..-.|.. =.++=|+.+|+.+.-..
T Consensus 567 Pive~~~LAR~Ly~---~~evg~~-IP~ely~aVA~iL~~v~ 604 (609)
T PRK12772 567 PIIENKPLARLIYK---KVEIDQE-IPQDMYQAVAEILAIVY 604 (609)
T ss_pred cEEeCHHHHHHHHH---cCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 99876443222100 0001111 14556777777665443
No 102
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=48.28 E-value=63 Score=26.69 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+|||..|+..-.. ....+.+ .+.++.+++.+.+..|+..+++++.|
T Consensus 68 ~~aDiVIitag~p~~~~--------~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP 120 (305)
T TIGR01763 68 ANSDIVVITAGLPRKPG--------MSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP 120 (305)
T ss_pred CCCCEEEEcCCCCCCcC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 46799999988753210 0122333 34566777888888888877777765
No 103
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=47.98 E-value=58 Score=27.09 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=33.0
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
..+.|+||+..|..-.- .....+.+ .+-++++.+.+.+..|++.+++++.|-
T Consensus 65 ~~daDivvitaG~~~~~--------g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 65 LKGADVVVIPAGVPRKP--------GMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred cCCCCEEEEeCCCCCCC--------CccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch
Confidence 34679999998864221 01123333 334677778888889999777776653
No 104
>PTZ00325 malate dehydrogenase; Provisional
Probab=47.87 E-value=64 Score=26.97 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=32.5
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
...|+||+..|...... ....+.+.. .++.+++.+++++++..|++.+.|
T Consensus 75 ~gaDvVVitaG~~~~~~--------~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 75 RGADLVLICAGVPRKPG--------MTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CCCCEEEECCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 36799999888754321 012334444 688899999999988755555444
No 105
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=47.80 E-value=46 Score=28.14 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHH-----hCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCC
Q 025869 92 EEYGDNLKIMVQHLKR-----LSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGV 166 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~-----~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v 166 (247)
.+.+...+++-+++.. .-|++.+|++.|....-+-. |......-..-..+-.+.....++++|+++||
T Consensus 231 P~iK~rrR~~~re~~~~~m~~~V~~AdVVItNPTH~AVAL~-------Yd~~~~~aP~VvAKG~d~~A~~Ir~iA~e~~V 303 (349)
T PRK12721 231 PEIKQKRRELQSEIQSGSLANNVKKSTAVVRNPTHIAVCLY-------YHPGETPLPRVLEKGKDAQALHIVKLAERNGI 303 (349)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCcEEEEcCCceEEEEE-------eCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCC
Confidence 3455555555554432 34889999998875422110 11000011111233345778889999999999
Q ss_pred CeeechH
Q 025869 167 PFIDLWS 173 (247)
Q Consensus 167 ~~vD~~~ 173 (247)
+++.--.
T Consensus 304 Piven~p 310 (349)
T PRK12721 304 PVVENIP 310 (349)
T ss_pred CEEeCHH
Confidence 9986544
No 106
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.57 E-value=93 Score=21.57 Aligned_cols=63 Identities=11% Similarity=0.000 Sum_probs=39.5
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP- 110 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p- 110 (247)
.++++++.|..- .... ......+ .+||+|.++. ....+...++++++.+++.++
T Consensus 26 ~G~~vi~lG~~v-p~e~---~~~~a~~----~~~d~V~iS~-----------------~~~~~~~~~~~~~~~L~~~~~~ 80 (122)
T cd02071 26 AGFEVIYTGLRQ-TPEE---IVEAAIQ----EDVDVIGLSS-----------------LSGGHMTLFPEVIELLRELGAG 80 (122)
T ss_pred CCCEEEECCCCC-CHHH---HHHHHHH----cCCCEEEEcc-----------------cchhhHHHHHHHHHHHHhcCCC
Confidence 348888888762 3332 2333333 3899999964 224456678999999999866
Q ss_pred CCeEEEEcC
Q 025869 111 IMLVVLITP 119 (247)
Q Consensus 111 ~~~ivl~~~ 119 (247)
..++++-+.
T Consensus 81 ~i~i~~GG~ 89 (122)
T cd02071 81 DILVVGGGI 89 (122)
T ss_pred CCEEEEECC
Confidence 544444443
No 107
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=47.02 E-value=22 Score=27.31 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechH
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWS 173 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~ 173 (247)
+..+++++++.++++ ++++++++- -|.+.+.-++.+.|+++-+.+.
T Consensus 89 lT~Gi~eLv~~L~~~--~~~v~liSG--------------------------------GF~~~i~~Va~~Lgi~~~n~yA 134 (227)
T KOG1615|consen 89 LTPGIRELVSRLHAR--GTQVYLISG--------------------------------GFRQLIEPVAEQLGIPKSNIYA 134 (227)
T ss_pred cCCCHHHHHHHHHHc--CCeEEEEcC--------------------------------ChHHHHHHHHHHhCCcHhhhhh
Confidence 445788999999999 788998876 2333444557778887755544
Q ss_pred HHHhcccccccccccccCCChhHHH
Q 025869 174 KMQETEGWQKKFLSDGLHLTEEGNA 198 (247)
Q Consensus 174 ~~~~~~~~~~~~~~Dg~Hp~~~G~~ 198 (247)
-........++...|-.-||..|..
T Consensus 135 N~l~fd~~Gk~~gfd~~~ptsdsgg 159 (227)
T KOG1615|consen 135 NELLFDKDGKYLGFDTNEPTSDSGG 159 (227)
T ss_pred heeeeccCCcccccccCCccccCCc
Confidence 3222222233445577778777654
No 108
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=46.20 E-value=69 Score=26.37 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..|+||+..|...--. ....+.+ ..-++++.+.+++..|++.+++++.|
T Consensus 66 ~aDiVIitag~p~~~~--------~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP 117 (300)
T cd00300 66 DADIVVITAGAPRKPG--------ETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP 117 (300)
T ss_pred CCCEEEEcCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence 5789999888743311 1123333 34477888888999999988777754
No 109
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=46.09 E-value=48 Score=27.97 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHh-----CCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcC
Q 025869 91 VEEYGDNLKIMVQHLKRL-----SPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG 165 (247)
Q Consensus 91 ~~~~~~~l~~~i~~~~~~-----~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 165 (247)
..+.+...+++-+++..+ -|.+.+|+..|..+.-+-. |......-..-..+-.+.....++++|+++|
T Consensus 229 dP~iK~r~R~~~re~~~~~m~~~V~~AdVVitNPTH~AVAL~-------Yd~~~~~AP~VvAKG~d~~A~~Ir~iA~e~~ 301 (342)
T TIGR01404 229 DPEIKSKRRELHQEILSEQLKSDVKRSTLVVANPTHIAIGIY-------YKPGETPLPLIICKGTDAQALAVRAYAEEAG 301 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCCCcEEEECCceeEEEeE-------ECCCCCCCCEEEEeeCcHHHHHHHHHHHHcC
Confidence 334566666665555433 4789899998875421110 1100001111123344577888999999999
Q ss_pred CCeeechHH
Q 025869 166 VPFIDLWSK 174 (247)
Q Consensus 166 v~~vD~~~~ 174 (247)
|+++.--..
T Consensus 302 VPiven~pL 310 (342)
T TIGR01404 302 IPVVRDIPL 310 (342)
T ss_pred CCEeeCHHH
Confidence 999876543
No 110
>PRK00865 glutamate racemase; Provisional
Probab=46.04 E-value=1.6e+02 Score=23.72 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=44.1
Q ss_pred CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q 025869 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (247)
Q Consensus 34 ~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ 113 (247)
+.+.+-|+||.+... .+.+.++ +-++ |.+|-|-...+. .-+.++..+.+.++++.+.+. ++.
T Consensus 8 IgvfDSGiGGLtvl~---~i~~~lp-----~~~~--iY~~D~~~~PYG------~ks~~~i~~~~~~~~~~L~~~--g~d 69 (261)
T PRK00865 8 IGVFDSGVGGLTVLR---EIRRLLP-----DEHI--IYVGDTARFPYG------EKSEEEIRERTLEIVEFLLEY--GVK 69 (261)
T ss_pred EEEEECCccHHHHHH---HHHHHCC-----CCCE--EEEecCCCCCCC------CCCHHHHHHHHHHHHHHHHhC--CCC
Confidence 678899999976653 3334333 2344 444544443321 247788889999999999987 555
Q ss_pred EEEEcCC
Q 025869 114 VVLITPP 120 (247)
Q Consensus 114 ivl~~~~ 120 (247)
.+++...
T Consensus 70 ~iVIaCN 76 (261)
T PRK00865 70 MLVIACN 76 (261)
T ss_pred EEEEeCc
Confidence 6766553
No 111
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.86 E-value=1.6e+02 Score=23.86 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=29.4
Q ss_pred CCchHHHHHHhhhhcCCCCCCCCcE-EEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 43 GYNTRWALFLLHHIFPLDNSNPPVA-TTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 43 G~~t~~~~~~l~~~~~~~~~~~~d~-vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
|.+....++.+..+.+. .+++ +++|.=.|.+. ...++++++.+++.+-+- +++...
T Consensus 75 g~t~~~~lel~~~~r~~----~~~~Pivlm~Y~Npi~----------------~~Gie~F~~~~~~~GvdG-livpDL 131 (265)
T COG0159 75 GVTLEDTLELVEEIRAK----GVKVPIVLMTYYNPIF----------------NYGIEKFLRRAKEAGVDG-LLVPDL 131 (265)
T ss_pred CCCHHHHHHHHHHHHhc----CCCCCEEEEEeccHHH----------------HhhHHHHHHHHHHcCCCE-EEeCCC
Confidence 34455555666665543 3332 44444445544 345677777887775332 444444
No 112
>PRK00549 competence damage-inducible protein A; Provisional
Probab=45.78 E-value=67 Score=27.92 Aligned_cols=68 Identities=16% Similarity=0.043 Sum_probs=41.8
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
|+-.|+.+||-+. .|.-...-...+.+.+. .++++.....-+.......+.+.... .+.|+||+..|.
T Consensus 1 m~~~ii~~G~Ell-~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~-----~~~DlVItTGGl 69 (414)
T PRK00549 1 MKAEIIAVGTELL-LGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAE-----ERSDLIITTGGL 69 (414)
T ss_pred CEEEEEEeccccc-CCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhc-----cCCCEEEECCCC
Confidence 6678999999998 44322222334444432 23667777777766665555555433 268999998664
No 113
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=45.72 E-value=54 Score=27.87 Aligned_cols=104 Identities=15% Similarity=0.075 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHH-----HhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCC
Q 025869 92 EEYGDNLKIMVQHLK-----RLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGV 166 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~-----~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v 166 (247)
.+.+...+++-+++. +.-|++.+|++.|..+.-+-. |.....+-..-..+-.+.....++++|+++||
T Consensus 240 P~iK~r~Rq~~re~~~~~m~~~V~~AdVVItNPTH~AVAL~-------Yd~~~~~aP~VvAKG~d~~A~~Ir~~A~e~~V 312 (358)
T PRK13109 240 PSVKARLRSLAQDRARNRMLANVPRATLVIANPTHFAIALR-------YERSENPAPLVVAKGQDLIALKIREIAEENGI 312 (358)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEeE-------eCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCC
Confidence 345556666655553 344889999998875422110 11000011111223345778889999999999
Q ss_pred CeeechHHHHhcccccccccccccC-CChhHHHHHHHHHHHH
Q 025869 167 PFIDLWSKMQETEGWQKKFLSDGLH-LTEEGNAVVHKEVVEV 207 (247)
Q Consensus 167 ~~vD~~~~~~~~~~~~~~~~~Dg~H-p~~~G~~~iA~~l~~~ 207 (247)
+++---..-..-. ...+--+ -.+.=|+.+|+.+.-.
T Consensus 313 Piven~pLARaLy-----~~~evg~~IP~ely~AVA~ILa~v 349 (358)
T PRK13109 313 PVIEDKPLARSLY-----DAVQVDQVIPAEFYRPVAQILYFL 349 (358)
T ss_pred CEEeCHHHHHHHH-----HhCCCCCcCCHHHHHHHHHHHHHH
Confidence 9986644322210 0111111 1345577777766543
No 114
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=45.23 E-value=1.3e+02 Score=22.41 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=26.1
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
..|.+++.+-..|. +.|...+...++.+++..|.+++++++.
T Consensus 72 ~a~~~ilvfdit~~--------------~Sf~~~~~~w~~~i~~~~~~~~iilVgn 113 (178)
T cd04131 72 DSDAVLICFDISRP--------------ETLDSVLKKWRGEIQEFCPNTKVLLVGC 113 (178)
T ss_pred CCCEEEEEEECCCh--------------hhHHHHHHHHHHHHHHHCCCCCEEEEEE
Confidence 56888887744333 3333334566666776667777888765
No 115
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=45.05 E-value=67 Score=27.91 Aligned_cols=68 Identities=15% Similarity=0.029 Sum_probs=42.3
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
||--|+.+||-+. .|.-...-...+.+.+. .++++.....-+.......+.+..... +.|+||+..|.
T Consensus 1 m~v~Ii~tGdEll-~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~-----~~DlVIttGGl 69 (413)
T TIGR00200 1 LKAEIISVGDELL-LGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASE-----RADVLIFNGGL 69 (413)
T ss_pred CEEEEEEECcccc-CCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-----CCCEEEEcCCC
Confidence 6778999999998 45322222223333331 237777777777777655555555443 68999998664
No 116
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=44.63 E-value=1.7e+02 Score=23.79 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHH
Q 025869 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSK 174 (247)
Q Consensus 95 ~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~ 174 (247)
.+.+.+++++++...+ +|+.+. . ..+..+.+++.|+.+|++++|+...
T Consensus 45 ~~~~~~i~~~~~~~~~---iV~~Tl--------------------------v---~~elr~~l~~~~~~~~i~~vdll~p 92 (269)
T PRK05339 45 EEKADEVLEEINAERP---IVFYTL--------------------------V---DPELREILEERCAEFGIPCIDILGP 92 (269)
T ss_pred HHHHHHHHHHHHhcCC---EEEEeC--------------------------C---CHHHHHHHHHHHHHcCCCEEeccHH
Confidence 4467778888876432 666665 1 1256667788899999999999988
Q ss_pred HHhc
Q 025869 175 MQET 178 (247)
Q Consensus 175 ~~~~ 178 (247)
+.+.
T Consensus 93 ~i~~ 96 (269)
T PRK05339 93 LIAP 96 (269)
T ss_pred HHHH
Confidence 7764
No 117
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=44.05 E-value=53 Score=27.07 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=32.2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+|||..|..-.. .....+.+.. -++++.+.+++.+|++.+++++.|
T Consensus 63 ~daDivVitag~~rk~--------g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 115 (299)
T TIGR01771 63 KDADLVVITAGAPQKP--------GETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNP 115 (299)
T ss_pred CCCCEEEECCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3678999987763211 0113333333 467778888888999988888765
No 118
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=43.93 E-value=1.4e+02 Score=25.28 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=34.3
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc--ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEE
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIF 71 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~--~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~ 71 (247)
+.||+++.||-.- -..+.+.+. .+++++..+.+|... ++...+ .+||+|++-
T Consensus 1 ~irVlvVddsal~--------R~~i~~~l~~~~~i~vv~~a~ng~~a------~~~~~~----~~PDVi~ld 54 (350)
T COG2201 1 KIRVLVVDDSALM--------RKVISDILNSDPDIEVVGTARNGREA------IDKVKK----LKPDVITLD 54 (350)
T ss_pred CcEEEEEcCcHHH--------HHHHHHHHhcCCCeEEEEecCCHHHH------HHHHHh----cCCCEEEEe
Confidence 4589999999883 446666664 336777888877333 233333 389999993
No 119
>PRK09108 type III secretion system protein HrcU; Validated
Probab=43.75 E-value=56 Score=27.71 Aligned_cols=105 Identities=17% Similarity=0.091 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHH-----hCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCC
Q 025869 92 EEYGDNLKIMVQHLKR-----LSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGV 166 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~-----~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v 166 (247)
.+.+...+++-+++.. .-|++.+|+..|..+.-+-. |.....+-.--..+-.+.....++++|+++||
T Consensus 233 P~iK~rrRq~~re~a~~~m~~~V~~AdvVItNPTH~AVAL~-------Y~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~V 305 (353)
T PRK09108 233 PHIKGERKRLARELAFAPPRQRVARANVVVVNPTHYAVALR-------YAPDEHPLPRVIAKGVDDGALALRRHAHALGI 305 (353)
T ss_pred HHHHHHHHHHHHHHHHhHHhccCCCCcEEEECCCceEEEeE-------eCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCC
Confidence 3455555555554433 34889999998875422110 11000011111233345778889999999999
Q ss_pred CeeechHHHHhccccccccccc-ccCCChhHHHHHHHHHHHHHH
Q 025869 167 PFIDLWSKMQETEGWQKKFLSD-GLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 167 ~~vD~~~~~~~~~~~~~~~~~D-g~Hp~~~G~~~iA~~l~~~l~ 209 (247)
+++.--..-..- |..+ |----+.=|+.+|+.+.-..+
T Consensus 306 Pvven~pLARaL------y~~~vg~~IP~ely~aVA~iL~~v~~ 343 (353)
T PRK09108 306 PIVGNPPVARAL------YRVELDEPIPEELFETVAAILRWVDE 343 (353)
T ss_pred CEEeCHHHHHHH------hcCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 998765433321 1111 111134457777776655443
No 120
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=43.56 E-value=1.3e+02 Score=26.48 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHhC
Q 025869 87 QHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
..++-+.|..+=++.++++++.+
T Consensus 158 ~dipRe~Y~eAEervI~ELk~ig 180 (492)
T PF09547_consen 158 TDIPRENYVEAEERVIEELKEIG 180 (492)
T ss_pred cCCChHHHHHHHHHHHHHHHHhC
Confidence 34677889999999999999986
No 121
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=43.51 E-value=1.3e+02 Score=23.36 Aligned_cols=72 Identities=28% Similarity=0.304 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHH-HhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCe--eec
Q 025869 95 GDNLKIMVQHLK-RLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPF--IDL 171 (247)
Q Consensus 95 ~~~l~~~i~~~~-~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~--vD~ 171 (247)
...|..+++++. ..+.+.++++++.=|-.+.+..-. .|.. .....++.-.... .+.++++++.+++.+ +..
T Consensus 87 l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk---~Y~~--~~~~~~~~~ltg~-~~~~~~~~k~~~V~~~~v~~ 160 (207)
T COG1999 87 LAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLK---KYAE--LNFDPRWIGLTGT-PEQIEEVAKAYGVFYSKVPL 160 (207)
T ss_pred HHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHH---HHhc--ccCCCCeeeeeCC-HHHHHHHHHHhcceeeeccc
Confidence 445777777777 566688889998877666532221 1333 0111112112222 355677788888776 544
Q ss_pred h
Q 025869 172 W 172 (247)
Q Consensus 172 ~ 172 (247)
.
T Consensus 161 ~ 161 (207)
T COG1999 161 D 161 (207)
T ss_pred C
Confidence 4
No 122
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=43.46 E-value=66 Score=23.92 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCcEEEEEccCccccccCCCCCC----------------CCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSER----------------QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~----------------~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.-++|++.+|++-.. .+..+.. ......-...||++.++++++++++..||.+..
T Consensus 24 ~~~iv~lCIGTDRst-GDsLGPLVGt~L~~~~~~~~~VyGTL~~PVHA~NL~e~l~~I~~~~~~~~IIAIDA 94 (163)
T PF06866_consen 24 NREIVFLCIGTDRST-GDSLGPLVGTKLKEMGFPNFNVYGTLDEPVHALNLEETLNEIKKKHPNPFIIAIDA 94 (163)
T ss_pred CCCEEEEEECCCCCc-cccccchhhHHHHhcCCCCceEEECCCCCcchhhHHHHHHHHHHHCCCCeEEEEEC
Confidence 668899999997542 1111110 011222357799999999999988887887753
No 123
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.14 E-value=77 Score=26.33 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+|||..|..-.. .....+.+.. -++++.+.+++..|+..+++++.|
T Consensus 70 ~~adivvitaG~~~k~--------g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP 122 (312)
T cd05293 70 ANSKVVIVTAGARQNE--------GESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP 122 (312)
T ss_pred CCCCEEEECCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh
Confidence 3678999988775331 0113333333 467788888989999977777754
No 124
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=43.06 E-value=83 Score=22.62 Aligned_cols=67 Identities=13% Similarity=-0.010 Sum_probs=39.4
Q ss_pred ceEEEEccccccccc------CCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 3 PQIVLFGDSITQQSF------GSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~------~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-.|+.+||-+...+. ....-...+...+. .++++...+..+.......+.+.+... +.|+||+..|+
T Consensus 3 v~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~-----~~DliIttGG~ 76 (144)
T TIGR00177 3 VAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVD-----EADVVLTTGGT 76 (144)
T ss_pred EEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHh-----CCCEEEECCCC
Confidence 357889999885221 11122233333331 236777778777776655555655443 68999998654
No 125
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=42.97 E-value=38 Score=27.85 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=28.9
Q ss_pred EEEccCcccccc----CCCCC----CCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 69 TIFFGANDAALF----GRTSE----RQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 69 ii~~G~ND~~~~----~~~~~----~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
++.+|+||+..+ +.... .....-..+.+.++.+++.+++. +..+-+++-
T Consensus 200 F~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~--g~~vsvCGe 256 (293)
T PF02896_consen 200 FFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKA--GKPVSVCGE 256 (293)
T ss_dssp EEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHT--T-EEEEESG
T ss_pred EEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhc--CcEEEEecC
Confidence 567899998432 10000 01112334677888888889888 666777765
No 126
>PLN02199 shikimate kinase
Probab=42.92 E-value=1e+02 Score=25.57 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCCeEEEEcCCCCCcch
Q 025869 98 LKIMVQHLKRLSPIMLVVLITPPPVDEDG 126 (247)
Q Consensus 98 l~~~i~~~~~~~p~~~ivl~~~~p~~~~~ 126 (247)
|.+.-+.++...++..|++++++..++..
T Consensus 89 Lk~~a~~i~~~l~~~~I~LIG~~GSGKST 117 (303)
T PLN02199 89 LKRKAEEVKPYLNGRSMYLVGMMGSGKTT 117 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 77777888887778889999998766653
No 127
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=42.85 E-value=62 Score=27.38 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHH-----hCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCC
Q 025869 92 EEYGDNLKIMVQHLKR-----LSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGV 166 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~-----~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v 166 (247)
.+.+...+++-+++.. .-|++.+|++.|..+.-.-. |......-.....+-.+.....++++|+++||
T Consensus 231 P~iK~rrR~~~re~a~~~m~~~V~~AdVVItNPTH~AVal~-------Y~~~~~~aP~vvakG~~~~A~~I~~~A~~~~v 303 (347)
T TIGR00328 231 PEVKGRIRQMQREAARRRMMQEVPKADVVITNPTHYAVALK-------YDPGKMPAPVVVAKGVDELALKIKEIARENNV 303 (347)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEeE-------eCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCC
Confidence 3455555555554433 34889999998875432110 11000011111233345778889999999999
Q ss_pred CeeechHHHHhcccccccccccccCCChhHHHHHHHHHHH
Q 025869 167 PFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 167 ~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
+++.--..-..-.. ..-.|. --.+.-|+.+|+.+.-
T Consensus 304 Pi~~~~~LAr~Ly~---~~~~g~-~IP~~ly~aVA~il~~ 339 (347)
T TIGR00328 304 PIVENPPLARALYR---QVEIGQ-EIPPELYKAVAEVLAY 339 (347)
T ss_pred CEEeCHHHHHHHHH---cCCCCC-cCCHHHHHHHHHHHHH
Confidence 99866443332100 000011 1245667777776543
No 128
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=42.13 E-value=61 Score=29.59 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHH------HhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcC
Q 025869 92 EEYGDNLKIMVQHLK------RLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG 165 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~------~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 165 (247)
.+.+...+++-+++. +.-|++.+|++.|..+.-+-. |......-...+.+-.+.....++++|+++|
T Consensus 529 PeIKaRRRqlqREmar~rRMm~~VpkADVVITNPTHyAVALK-------Ydp~~~~APiVVAKG~D~lAlrIReiAeE~g 601 (646)
T PRK12773 529 RSLQARRRQLARDMMNKRKMLAKVPEADVVITNPTHFAVALE-------YKPGIHKAPIVIAKGVDDFALLIIRIARENG 601 (646)
T ss_pred HHHHHHHHHHHHHHHhhcchhhcCCCCcEEEECCCceEEEEE-------ECCCCCCCCEEEEEeCcHHHHHHHHHHHHcC
Confidence 345555555555444 244899999998875422110 1100001111133344578888999999999
Q ss_pred CCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHH
Q 025869 166 VPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEV 207 (247)
Q Consensus 166 v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~ 207 (247)
|+++.--+.-..-.. ..-.| ---.+.=|+.+|+.+.-.
T Consensus 602 VPIVENpPLARALY~---~veVG-q~IP~eLYeAVAeILa~V 639 (646)
T PRK12773 602 VPTVEDRLQARGLYE---EVELG-AEVPQQFYRAIATILSRL 639 (646)
T ss_pred CcEEECHHHHHHHHH---cCCCC-CcCCHHHHHHHHHHHHHH
Confidence 999876443222100 00001 112455577777766543
No 129
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=42.00 E-value=2e+02 Score=23.74 Aligned_cols=100 Identities=9% Similarity=0.024 Sum_probs=54.2
Q ss_pred eEEEEcccccccccCCCcHH-HHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc-ccccc
Q 025869 4 QIVLFGDSITQQSFGSAGWG-AALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN-DAALF 80 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~-~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N-D~~~~ 80 (247)
-|++-||...++. ++. ..+.+.+. .++.|--.+...|.+.. -+.++- +|.+.+.-.++| |...+
T Consensus 19 vilVtGDAYVDHP----sFG~AiIgR~Le~~GyrVgIiaQPdw~~~~---df~~lG------~PrLff~VsaGn~DSMV~ 85 (302)
T PF08497_consen 19 VILVTGDAYVDHP----SFGAAIIGRVLEAHGYRVGIIAQPDWRSPE---DFKRLG------RPRLFFGVSAGNMDSMVN 85 (302)
T ss_pred EEEEeCcccccCc----chhHHHHHHHHHHcCCeEEEEeCCCCCChH---HHHHhC------CCcEEEEEccccHHHHHH
Confidence 3788999999754 332 33444442 33667667777776663 233322 688876665554 43211
Q ss_pred C-------------CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 81 G-------------RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 81 ~-------------~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
+ .+++..+..++.-.-- -.+.+|+.+|++.||+-+.
T Consensus 86 hYTa~kk~R~~DaYtPGG~~g~RPDRAtiV---Y~n~ir~~f~~vPiiiGGI 134 (302)
T PF08497_consen 86 HYTASKKRRSDDAYTPGGKAGRRPDRATIV---YTNLIREAFKDVPIIIGGI 134 (302)
T ss_pred hhccccccccccCCCCCCCCCCCCCchhhH---HHHHHHHHCCCCCEEEecc
Confidence 0 1223333444443333 3445566677886776655
No 130
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=41.85 E-value=68 Score=27.60 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHH-----hCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCC
Q 025869 93 EYGDNLKIMVQHLKR-----LSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVP 167 (247)
Q Consensus 93 ~~~~~l~~~i~~~~~-----~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~ 167 (247)
+.+...+++-+++.. .-|++.+|++.|..+.-+-. |.....+-.....+-.+.....++++|+++||+
T Consensus 239 ~iK~r~Rq~~re~a~~~m~~~V~~AdVVItNPTH~AVALk-------Y~~~~~~AP~VvAKG~d~~A~~Ir~~A~e~~VP 311 (386)
T PRK12468 239 HVKGRIRQQQRAMARRRMMVDVPKADVIVTNPTHYAVALQ-------YNESKMSAPKVLAKGAGAVALRIRELGAEHRIP 311 (386)
T ss_pred HHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEEE-------eCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCc
Confidence 355555555554433 34889999998875432210 110000111112333457788899999999999
Q ss_pred eeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHH
Q 025869 168 FIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 168 ~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~ 209 (247)
++.--..-..-.. ..-.| ---.+.-|+.+|+.+.-..+
T Consensus 312 iven~pLARaLy~---~~evg-~~IP~ely~AVA~ILa~V~~ 349 (386)
T PRK12468 312 LLEAPPLARALFR---HSEVG-QHIPATLYAAVAEVLAWVYQ 349 (386)
T ss_pred EEeCHHHHHHHHH---hCCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 9876543332110 00011 12256678888886654443
No 131
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.70 E-value=93 Score=25.37 Aligned_cols=42 Identities=7% Similarity=-0.134 Sum_probs=24.7
Q ss_pred HHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q 025869 50 LFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVL 116 (247)
Q Consensus 50 ~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl 116 (247)
...+.++... +||+|++....+|. ..+++++++.+-..+++.
T Consensus 182 ~~~v~~l~~~----~pd~v~~~~~~~~~---------------------~~~~~~~~~~G~~~~~~~ 223 (312)
T cd06346 182 SSEVAAAAAG----GPDALVVIGYPETG---------------------SGILRSAYEQGLFDKFLL 223 (312)
T ss_pred HHHHHHHHhc----CCCEEEEecccchH---------------------HHHHHHHHHcCCCCceEe
Confidence 3455555544 89999886544443 256666776654444444
No 132
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=41.55 E-value=1.2e+02 Score=23.64 Aligned_cols=63 Identities=8% Similarity=-0.074 Sum_probs=40.2
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ 111 (247)
.++++++.|..- .... ......+ .+||+|.+++- .......++++++.+++.+++
T Consensus 115 ~G~~Vi~LG~~v-p~e~---~v~~~~~----~~~~~V~lS~~-----------------~~~~~~~~~~~i~~L~~~~~~ 169 (213)
T cd02069 115 NGYEVIDLGVMV-PIEK---ILEAAKE----HKADIIGLSGL-----------------LVPSLDEMVEVAEEMNRRGIK 169 (213)
T ss_pred CCCEEEECCCCC-CHHH---HHHHHHH----cCCCEEEEccc-----------------hhccHHHHHHHHHHHHhcCCC
Confidence 348888888653 2222 2333333 38899888642 223355788999999998887
Q ss_pred CeEEEEcC
Q 025869 112 MLVVLITP 119 (247)
Q Consensus 112 ~~ivl~~~ 119 (247)
++|++-+.
T Consensus 170 ~~i~vGG~ 177 (213)
T cd02069 170 IPLLIGGA 177 (213)
T ss_pred CeEEEECh
Confidence 77666664
No 133
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=41.42 E-value=93 Score=25.63 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|..... .....+.+.. -++++.+.+++.+|++.+++++.|
T Consensus 67 ~~aDIVIitag~~~~~--------g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP 119 (306)
T cd05291 67 KDADIVVITAGAPQKP--------GETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNP 119 (306)
T ss_pred CCCCEEEEccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCh
Confidence 4679999988764321 0123333333 467788888889999977777754
No 134
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.39 E-value=63 Score=27.42 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=48.5
Q ss_pred HHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccc
Q 025869 106 KRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKF 185 (247)
Q Consensus 106 ~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~ 185 (247)
.+.-|++.+|+..|..+.-+-. |..+...-......-.+...-.++++|+++||+++---+.-..- +.
T Consensus 257 ~~~Vp~AdvVItNPTH~AVAlk-------Y~~~~~~AP~VvAKG~d~~AlkIreiA~e~~Ipi~enppLARaL-----Y~ 324 (363)
T COG1377 257 MSDVPKADVVITNPTHYAVALK-------YDPEKMPAPVVVAKGVDLVALKIREIAKEHGIPIIENPPLARAL-----YR 324 (363)
T ss_pred HhhCCCCCEEeeCcCceeeeee-------eccccCCCCEEEEeCCcHHHHHHHHHHHHcCCceecChHHHHHH-----HH
Confidence 4445899999998876532211 11110001111222334667789999999999988654332221 00
Q ss_pred ccc-ccCCChhHHHHHHHHHHHHHH
Q 025869 186 LSD-GLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 186 ~~D-g~Hp~~~G~~~iA~~l~~~l~ 209 (247)
..+ +-+--+.=|+.+|+.+.-..+
T Consensus 325 ~~~v~~~IP~e~y~aVaevL~~V~~ 349 (363)
T COG1377 325 QVEVGQQIPEELYKAVAEVLAYVYQ 349 (363)
T ss_pred hcCccccCCHHHHHHHHHHHHHHHH
Confidence 111 112345567788876654443
No 135
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=41.13 E-value=1.4e+02 Score=24.20 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=41.7
Q ss_pred HHHHhhhhcCCCCCCCCcEEEEEc------cCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 49 ALFLLHHIFPLDNSNPPVATTIFF------GANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 49 ~~~~l~~~~~~~~~~~~d~vii~~------G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+.++++.. +-|++||.. =+||+..+...-.+--.+...-.+.+.++.+.+++..++.-|+++.-|
T Consensus 123 ~F~~lK~iW~-----~rdIliVEG~~sR~GvGndLF~naksI~rIicPsknAy~~yd~I~e~i~~~~k~~LiLlaLGP 195 (265)
T TIGR03728 123 YFEKLKQIWK-----NKDILIVEGETSRSGVGNDLFDNAKSIKRIICPSKNAFSKYDEILEAIRENAKNKLILLMLGP 195 (265)
T ss_pred HHHHHHHHhC-----CCcEEEEecccccccCchhhhhCcccEEEEeCCChhHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 3455666665 468888873 248887553322223345666677899999999988766545555443
No 136
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=41.06 E-value=97 Score=27.71 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=38.2
Q ss_pred CCCcEEEEEccCccccccCC-CCCCCC-CChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 63 NPPVATTIFFGANDAALFGR-TSERQH-VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~-~~~~~~-~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.+.|.+||++ |...+.+ ..++.+ .+.++..+.+ +.++.+++.+|+.+|++.+..+
T Consensus 57 ~~~d~~ViS~---D~L~yGGLv~SR~~~~~~~~~~~rl-~~l~~lk~~~p~~~iyaf~~Im 113 (497)
T PF13552_consen 57 PDADAAVIST---DMLLYGGLVPSRIHHLSLEEALERL-ERLRELKARNPNLPIYAFSTIM 113 (497)
T ss_pred ccCCEEEEEH---HhhhhcCcHhhcCCCCCHHHHHHHH-HHHHHHHHHCCCCeEEEEEEEe
Confidence 3789999987 6654432 223333 4566666655 8889999999999999887653
No 137
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.87 E-value=1.3e+02 Score=21.46 Aligned_cols=67 Identities=7% Similarity=-0.122 Sum_probs=42.0
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP- 110 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p- 110 (247)
.++++++.|..- ... +......+. +||+|.++.-.. .....++++++++++.++
T Consensus 30 ~G~eVi~LG~~v-p~e---~i~~~a~~~----~~d~V~lS~~~~-----------------~~~~~~~~~~~~L~~~~~~ 84 (137)
T PRK02261 30 AGFEVINLGVMT-SQE---EFIDAAIET----DADAILVSSLYG-----------------HGEIDCRGLREKCIEAGLG 84 (137)
T ss_pred CCCEEEECCCCC-CHH---HHHHHHHHc----CCCEEEEcCccc-----------------cCHHHHHHHHHHHHhcCCC
Confidence 448999998763 222 233333333 899999964211 224567788888988854
Q ss_pred CCeEEEEcCCCCC
Q 025869 111 IMLVVLITPPPVD 123 (247)
Q Consensus 111 ~~~ivl~~~~p~~ 123 (247)
+.+|++-+.+...
T Consensus 85 ~~~i~vGG~~~~~ 97 (137)
T PRK02261 85 DILLYVGGNLVVG 97 (137)
T ss_pred CCeEEEECCCCCC
Confidence 6767777766543
No 138
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.72 E-value=1.1e+02 Score=25.33 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=31.7
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCC---hhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVP---VEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~---~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+|||..|..-- ++.+ .+.+.. -+++++..+.+.+|+..+++++.|
T Consensus 67 ~~aDivvitaG~~~k---------pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 67 ADADIIVITAGPSID---------PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred CCCCEEEECCCCCCC---------CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 467888888776321 1122 444444 467888888889999876666665
No 139
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=40.69 E-value=87 Score=24.19 Aligned_cols=64 Identities=27% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCc-EEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKAD-VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAND 76 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~-v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND 76 (247)
+||.|++||+++... .|... .+.... .+ ++..|-|..... +......... ....+++|..+...
T Consensus 130 lrP~VV~FgE~lp~~-----~~~~a-~~~~~~-aDlllviGTSl~V~p-a~~l~~~~~~----~g~~vi~iN~~~~~ 194 (206)
T cd01410 130 LKDTIVDFGERLPPE-----NWMGA-AAAACR-ADLFLCLGTSLQVTP-AANLPLKAAR----AGGRLVIVNLQPTP 194 (206)
T ss_pred cCCcEEECCCCCCHH-----HHHHH-HHHHhc-CCEEEEECcCceehh-HHHHHHHHHh----cCCeEEEECCCCCC
Confidence 589999999998841 24322 222322 33 456777764332 2222222222 25677777665443
No 140
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=40.64 E-value=1.1e+02 Score=22.77 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHhcCCCe-eechHHHHhcccccccccccccCCChhH
Q 025869 149 MTGVYARQCIETAKDLGVPF-IDLWSKMQETEGWQKKFLSDGLHLTEEG 196 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~-vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G 196 (247)
.+.+..+.+.++|+++++.+ |+-+..+.. .+..||+|++...
T Consensus 40 ~~~~~a~~l~~~~~~~~~~liin~~~~la~------~~~~dGvHl~~~~ 82 (180)
T PF02581_consen 40 ELLELARRLAELCQKYGVPLIINDRVDLAL------ELGADGVHLGQSD 82 (180)
T ss_dssp HHHHHHHHHHHHHHHTTGCEEEES-HHHHH------HCT-SEEEEBTTS
T ss_pred HHHHHHHHHHHHhhcceEEEEecCCHHHHH------hcCCCEEEecccc
Confidence 44466677788888888774 444333332 3567999988764
No 141
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=40.42 E-value=1e+02 Score=23.00 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeec
Q 025869 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDL 171 (247)
Q Consensus 96 ~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~ 171 (247)
..++++.+.+++.. +..+|++.+...-.. ...+ .+....++.+.++++|+++|+.++=+
T Consensus 127 ~~~~~l~~~~~~~~-~~~lvviD~l~~~~~---------------~~~~-~~~~~~~~~~~l~~la~~~~~~vi~v 185 (193)
T PF13481_consen 127 EDLEELEAALKELY-GPDLVVIDPLQSLHD---------------GDEN-SNSAVAQLMQELKRLAKEYGVAVILV 185 (193)
T ss_dssp HHHHHHHHHHTT-----SEEEEE-GGGG-----------------S-TT--HHHHHHHHHHHHHHHHHH--EEEEE
T ss_pred HHHHHHHHHHhhcC-CCcEEEEcCHHHHhc---------------CCCC-CHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 34566667666622 466888877321000 0111 12223688888999999999876543
No 142
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.17 E-value=1.1e+02 Score=25.48 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=33.1
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhC-CCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLS-PIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~-p~~~ivl~~~~ 120 (247)
..+.|+|||..|...--. ....+.+ .+-++.+...+.+.. |.+.+++++.|
T Consensus 76 ~~daDivvitaG~~~k~g--------~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 76 FKDADWALLVGAKPRGPG--------MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred hCCCCEEEEeCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 446799999888753310 1133333 344778888888888 48877777743
No 143
>PRK01215 competence damage-inducible protein A; Provisional
Probab=40.00 E-value=93 Score=25.18 Aligned_cols=65 Identities=8% Similarity=-0.131 Sum_probs=39.9
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+.+||-+. .|.-...-...+.+.+. .++++......+.......+.+..... +.|+||+..|+
T Consensus 7 ~Ii~~GdEll-~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~-----~~DlVIttGG~ 72 (264)
T PRK01215 7 WIITIGNELL-IGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAID-----RADVVVSTGGL 72 (264)
T ss_pred EEEEEChhcc-CCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhc-----CCCEEEEeCCC
Confidence 4778999988 44322222333444332 236777777777776666666666554 46999998665
No 144
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=39.87 E-value=1.3e+02 Score=27.16 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=17.3
Q ss_pred ccccccccccCCChhHHHHHHHH
Q 025869 181 WQKKFLSDGLHLTEEGNAVVHKE 203 (247)
Q Consensus 181 ~~~~~~~Dg~Hp~~~G~~~iA~~ 203 (247)
+...|..|++-++++..+.+.+.
T Consensus 453 AkkIYGA~~V~~s~~A~kqL~~~ 475 (557)
T PRK13505 453 ATKIYGAKGVEFSPKAKKQLKQI 475 (557)
T ss_pred HHHccCCCCeeECHHHHHHHHHH
Confidence 34467789999999888877654
No 145
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.74 E-value=60 Score=26.05 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=31.2
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHh--------cccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEcc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAY--------CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~--------~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G 73 (247)
|-||+|+|-++.+ .....+-.++ .+.+..+-.+=+|..|. .+..++.+.-- ++|+-.+.+|
T Consensus 91 reRIi~lg~~Idd------~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vta-glAIYDtMq~i----k~~V~Tic~G 159 (275)
T KOG0840|consen 91 RERIVFLGQPIDD------DVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTA-GLAIYDTMQYI----KPDVSTICVG 159 (275)
T ss_pred HhheeeeCCcCcH------HHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccch-hhhHHHHHHhh----CCCceeeehh
Confidence 3477888877775 3333333332 12244444445554443 33455554433 6777766654
No 146
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=38.61 E-value=92 Score=23.47 Aligned_cols=59 Identities=19% Similarity=0.108 Sum_probs=29.4
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchH-HHHHHhhhhcCCCCCCCCcEEEEEcc
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTR-WALFLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~-~~~~~l~~~~~~~~~~~~d~vii~~G 73 (247)
+|+++|.+-.. ...-...+.+.++ ++.+. |..|.-.. ...+...++.. .+||+|+|.+|
T Consensus 50 ~vfllG~~~~v----~~~~~~~l~~~yP-~l~i~--g~~g~f~~~~~~~i~~~I~~----s~~dil~VglG 109 (177)
T TIGR00696 50 PIFLYGGKPDV----LQQLKVKLIKEYP-KLKIV--GAFGPLEPEERKAALAKIAR----SGAGIVFVGLG 109 (177)
T ss_pred eEEEECCCHHH----HHHHHHHHHHHCC-CCEEE--EECCCCChHHHHHHHHHHHH----cCCCEEEEEcC
Confidence 67777755432 0122334444442 23333 33454333 22334455544 48999999875
No 147
>PF01359 Transposase_1: Transposase (partial DDE domain); InterPro: IPR001888 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the mariner transposase []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3HOT_B 3HOS_A 3K9K_B 3F2K_B 3K9J_B 2F7T_A.
Probab=38.56 E-value=58 Score=21.00 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=31.3
Q ss_pred cEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q 025869 66 VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (247)
Q Consensus 66 d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ 111 (247)
-.+.|+.+...+....-+.....++.+.|...|+++.+.++...|.
T Consensus 31 vMl~vwWd~~Gvi~~e~L~~~~TIts~~Y~~ql~~l~~~l~~krp~ 76 (81)
T PF01359_consen 31 VMLSVWWDAKGVIHYELLPPGKTITSEYYCQQLDKLKQALREKRPE 76 (81)
T ss_dssp EEEEEEEETTEEEEEEEESTT---SHHHHHHHHHHHHHHHHHHTCC
T ss_pred eEEEEEeeccCcEeeeeCCCCccccHHHHHHHHHHHHHHHHHhChH
Confidence 4566677666554443334446688999999999999999988664
No 148
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=38.27 E-value=1.4e+02 Score=22.86 Aligned_cols=66 Identities=9% Similarity=-0.115 Sum_probs=35.0
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcc----cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCR----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~----~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+.+||++. .|.....-...+.+.+.. ...+ ..++-...-....+.+.++.. ..+.|+||+..|+
T Consensus 7 aIItvSd~~~-~G~i~D~ng~~L~~~L~~~G~~g~~v-~~~iVpDd~~~I~~aL~~a~~---~~~~DlIITTGGt 76 (193)
T PRK09417 7 GLVSISDRAS-SGVYEDKGIPALEEWLASALTSPFEI-ETRLIPDEQDLIEQTLIELVD---EMGCDLVLTTGGT 76 (193)
T ss_pred EEEEEcCcCC-CCceeechHHHHHHHHHHcCCCCceE-EEEECCCCHHHHHHHHHHHhh---cCCCCEEEECCCC
Confidence 5888999988 443322223344444431 1122 224444455544555555543 1268999988654
No 149
>PRK08506 replicative DNA helicase; Provisional
Probab=38.09 E-value=1.6e+02 Score=26.16 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHhcCCCeeechH
Q 025869 149 MTGVYARQCIETAKDLGVPFIDLWS 173 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~vD~~~ 173 (247)
.+....+.++.+|+++++++|=+..
T Consensus 326 ev~~isr~LK~lAkel~ipVi~lsQ 350 (472)
T PRK08506 326 QISEISRGLKLLARELDIPIIALSQ 350 (472)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEee
Confidence 4556778899999999999886654
No 150
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=37.99 E-value=2e+02 Score=22.67 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
..+.+++.+-..| .+.|...+...++.++...++.++++++.
T Consensus 84 ~ad~vIlVyDit~--------------~~Sf~~~~~~w~~~i~~~~~~~piilVgN 125 (232)
T cd04174 84 DSDAVLLCFDISR--------------PETVDSALKKWKAEIMDYCPSTRILLIGC 125 (232)
T ss_pred CCcEEEEEEECCC--------------hHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5677777763322 23444334556666666556777777765
No 151
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=37.68 E-value=96 Score=24.13 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=27.0
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
+||+|++-+...|. ..++.+.+.++...|+++|++++...
T Consensus 52 ~~DvvllDi~~p~~------------------~G~~~~~~~i~~~~p~~~vvvlt~~~ 91 (216)
T PRK10100 52 SGSIILLDMMEADK------------------KLIHYWQDTLSRKNNNIKILLLNTPE 91 (216)
T ss_pred CCCEEEEECCCCCc------------------cHHHHHHHHHHHhCCCCcEEEEECCc
Confidence 48999995433322 13444456677888999999998854
No 152
>PLN02602 lactate dehydrogenase
Probab=37.62 E-value=1.1e+02 Score=25.96 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHH---HHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+|||..|..--. .....+.+..| ++++.+.+.+..|++.+++++.|
T Consensus 104 ~daDiVVitAG~~~k~--------g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNP 156 (350)
T PLN02602 104 AGSDLCIVTAGARQIP--------GESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNP 156 (350)
T ss_pred CCCCEEEECCCCCCCc--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 4678899887763221 01233444443 67888888889999988877754
No 153
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=37.50 E-value=1.5e+02 Score=20.93 Aligned_cols=65 Identities=17% Similarity=0.017 Sum_probs=36.9
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
.|+..||-+.. |....+-...+...+. .++++...+.-...-....+.+.+... +.|+|+...|+
T Consensus 3 ~ii~~G~El~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~-----~~DlvittGG~ 68 (133)
T cd00758 3 AIVTVSDELSQ-GQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASR-----EADLVLTTGGT 68 (133)
T ss_pred EEEEeCccccC-CceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHh-----cCCEEEECCCC
Confidence 57889998873 3222222333333332 125666666666666655556655543 47988887654
No 154
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=37.39 E-value=2e+02 Score=22.47 Aligned_cols=42 Identities=24% Similarity=0.213 Sum_probs=25.7
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
..|++++.+-..|. +.+..-...+...++...+++++++++.
T Consensus 72 ~~d~illvfdis~~--------------~Sf~~i~~~w~~~~~~~~~~~piiLVgn 113 (222)
T cd04173 72 DSDAVLICFDISRP--------------ETLDSVLKKWQGETQEFCPNAKVVLVGC 113 (222)
T ss_pred CCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 67888888744433 3333333445555666667888888765
No 155
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=37.10 E-value=93 Score=26.01 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=32.7
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCC-CCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSP-IMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p-~~~ivl~~~~ 120 (247)
..+.|+|||..|...--. ....+.+ .+-++.+.+.+.+..| ++.+++++.|
T Consensus 77 ~~daDvVVitAG~~~k~g--------~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 131 (323)
T TIGR01759 77 FKDVDAALLVGAFPRKPG--------MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP 131 (323)
T ss_pred hCCCCEEEEeCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 346799999988753210 1122333 4457788888888887 8877777643
No 156
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=36.98 E-value=3.1e+02 Score=24.50 Aligned_cols=75 Identities=15% Similarity=0.020 Sum_probs=42.8
Q ss_pred HHHHHHHHh-cc---cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHH
Q 025869 22 WGAALADAY-CR---KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN 97 (247)
Q Consensus 22 ~~~~l~~~~-~~---~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~ 97 (247)
|...++..+ .. .+.+++.-....+.... ...+.. .+||+|.|..=+ .....
T Consensus 24 gl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~---~~~l~~----~~pdvVgis~~t------------------~~~~~ 78 (497)
T TIGR02026 24 WVAYIGGALLDAGYHDVTFLDAMTGPLTDEKL---VERLRA----HCPDLVLITAIT------------------PAIYI 78 (497)
T ss_pred HHHHHHHHHHhcCCcceEEecccccCCCHHHH---HHHHHh----cCcCEEEEecCc------------------ccHHH
Confidence 344555544 22 34555544444333322 223333 379999985311 01234
Q ss_pred HHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 98 LKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 98 l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
..++++.+|+..|++.||+-++.+
T Consensus 79 a~~~~~~~k~~~P~~~iV~GG~h~ 102 (497)
T TIGR02026 79 ACETLKFARERLPNAIIVLGGIHP 102 (497)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCc
Confidence 667889999999999888877643
No 157
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=36.90 E-value=1.8e+02 Score=21.75 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=26.1
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
..|.+++.+-..|. +.+..-+...++.++...|.+++++++.
T Consensus 76 ~ad~~ilvyDit~~--------------~Sf~~~~~~w~~~i~~~~~~~piilVgN 117 (182)
T cd04172 76 DSDAVLICFDISRP--------------ETLDSVLKKWKGEIQEFCPNTKMLLVGC 117 (182)
T ss_pred CCCEEEEEEECCCH--------------HHHHHHHHHHHHHHHHHCCCCCEEEEeE
Confidence 57888887743332 3333333566777777667777888765
No 158
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=36.47 E-value=74 Score=25.35 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~ 78 (247)
+||.|++||+++... .|.. ..+.....=-++..|-|..... +......... ....+++|..+..+..
T Consensus 153 lrP~Vv~FgE~~p~~-----~~~~-~~~~~~~aDl~lviGTSl~V~p-a~~l~~~~~~----~g~~~i~iN~~~t~~d 219 (244)
T PRK14138 153 IRPNIVFFGEALPQD-----ALRE-AIRLSSKASLMIVMGSSLVVYP-AAELPLITVR----SGGKLVIVNLGETPLD 219 (244)
T ss_pred ECCCEEECCCcCCHH-----HHHH-HHHHHhcCCEEEEeCcCCeeec-HhHHHHHHHH----cCCeEEEEcCCCCCCC
Confidence 589999999998841 2322 2233322213456777764333 2222211111 2567888888766543
No 159
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=36.43 E-value=1.2e+02 Score=25.27 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=39.6
Q ss_pred EEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 5 IVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 5 i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
|+.+||++. .|-....-...|...+. .++.+...++-........+.+.++... ..|+||...|+
T Consensus 160 Iltvsde~~-~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~----~~DlIITTGGt 225 (312)
T PRK03604 160 VLVLSDSIA-AGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAE----GYALIITTGGT 225 (312)
T ss_pred EEEECCcCC-CCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhC----CCCEEEECCCC
Confidence 889999998 44322233334444442 2366777777766666555666665432 67988887654
No 160
>PLN02629 powdery mildew resistance 5
Probab=36.33 E-value=20 Score=30.73 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=33.4
Q ss_pred CCcEEEEEccCccccc-------cCCCCCC--CCCC-hhHHHHHHHHHHHHHHHhC--CCCeEEEEcCCCCCc
Q 025869 64 PPVATTIFFGANDAAL-------FGRTSER--QHVP-VEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPVDE 124 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~-------~~~~~~~--~~~~-~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~~p~~~ 124 (247)
..|++||..|..=... ....+.. ..++ ...|+..|+...+-+.+.. .+..+++.+..|...
T Consensus 205 ~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~Hf 277 (387)
T PLN02629 205 DADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHY 277 (387)
T ss_pred cCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCcccc
Confidence 4699999987741100 0000000 1122 2356777777777665532 356688888887653
No 161
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=36.30 E-value=96 Score=25.21 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCc-EEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKAD-VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~-v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
+||.|++||+++... .|. ...+.... .+ ++..|-|+.... +......... ....+|+|..+....
T Consensus 174 lrP~VV~FGE~lp~~-----~~~-~a~~~~~~-aDlllviGTSl~V~p-a~~l~~~a~~----~g~~vi~IN~~~t~~ 239 (271)
T PTZ00409 174 FKPNVILFGEVIPKS-----LLK-QAEKEIDK-CDLLLVVGTSSSVST-ATNLCYRAHR----KKKKIVEVNISKTYI 239 (271)
T ss_pred ccCcEEEeCCcCCHH-----HHH-HHHHHHHc-CCEEEEECCCCcccC-HHHHHHHHHH----cCCCEEEECCCCCCC
Confidence 589999999998741 232 22333322 34 456777765433 2222222222 256788888776543
No 162
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=35.78 E-value=93 Score=26.50 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHH-----hCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCC
Q 025869 93 EYGDNLKIMVQHLKR-----LSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVP 167 (247)
Q Consensus 93 ~~~~~l~~~i~~~~~-----~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~ 167 (247)
+.+...+++-+++.. .-|++.+|++.|..+.-.-. |......-.....+-.+.....+++.|+++||+
T Consensus 239 ~iK~rrR~~~re~a~~~m~~~V~~AdVVItNPTH~AVal~-------Y~~~~~~aP~vvakg~~~~A~~i~~~A~~~~vp 311 (359)
T PRK05702 239 EVKGRIRQLQREMARRRMMAAVPKADVVITNPTHYAVALK-------YDRGKMAAPVVVAKGVDEVALKIREIAREHNVP 311 (359)
T ss_pred HHHHHHHHHHHHHHHhHHhhcCCCCcEEEECCCceEEEeE-------eCCCCCCCCEEEEeeCcHHHHHHHHHHHHcCCC
Confidence 345555555554432 34889999998875432210 110000111112333457778899999999999
Q ss_pred eeechHHHHhcccccccccccccCCChhHHHHHHHHHH
Q 025869 168 FIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVV 205 (247)
Q Consensus 168 ~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~ 205 (247)
++.--..-..-.. ..-.+. --.+.=|+.+|+.+.
T Consensus 312 i~~~~~LAr~Ly~---~~~~g~-~Ip~~~~~aVA~il~ 345 (359)
T PRK05702 312 IVENPPLARALYA---TVEIGQ-EIPEELYKAVAEVLA 345 (359)
T ss_pred EEeCHHHHHHHHH---cCCCCC-ccCHHHHHHHHHHHH
Confidence 9876543332110 000011 124556777777554
No 163
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=35.64 E-value=1.5e+02 Score=20.50 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeee
Q 025869 92 EEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFID 170 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD 170 (247)
+.+.+.+.+.++.++..+...++.++..- -+.....|.+..++.|++.|+.+..
T Consensus 10 ~~i~~~l~~~i~~l~~~~~~P~Laii~vg-------------------------~d~~S~~Y~~~k~k~~~~~Gi~~~~ 63 (117)
T PF00763_consen 10 KEIKEELKEEIEKLKEKGITPKLAIILVG-------------------------DDPASISYVRSKQKAAEKLGIEFEL 63 (117)
T ss_dssp HHHHHHHHHHHHHHHHCT---EEEEEEES---------------------------HHHHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEecC-------------------------CChhHHHHHHHHHHHHHHcCCceEE
Confidence 45666777888888777433334443330 1124458888889999999987643
No 164
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=35.63 E-value=85 Score=24.88 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCCchHHHHHHhhhhcCCC-CCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 42 GGYNTRWALFLLHHIFPLD-NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 42 ~G~~t~~~~~~l~~~~~~~-~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
+|.+....+..+++.+... ....||+|+...|+. +...++. +.-.++++-..++=+..++.+|.. +.+++.++.
T Consensus 225 ~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTD-iLeGDpL-G~L~ISp~Gi~~RDelVFr~~R~~--~iPvvMltS 299 (324)
T KOG1344|consen 225 NGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTD-ILEGDPL-GNLAISPEGIIERDELVFRTFRAL--GIPVVMLTS 299 (324)
T ss_pred cCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCc-cccCCCC-CCeeecccccchhhHHHHHHHHHc--CCcEEEEec
Confidence 3444444444443333211 245899999999884 3333322 223467777888888899999998 666777665
No 165
>TIGR02841 spore_YyaC putative sporulation protein YyaC. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, also called YyaC, is a member of that panel and is otherwise uncharacterized. The second round of PSI-BLAST shows many similarities to the germination protease GPR, which is found in exactly the same set of organisms and has a known role in the sporulation/germination process.
Probab=35.44 E-value=70 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
...|+++.++++++.+|+..|+.+..
T Consensus 45 HA~NL~e~l~~I~~~~~~~~iIAIDA 70 (140)
T TIGR02841 45 HAKNLEEKLKIIKKKHPNPFIIAIDA 70 (140)
T ss_pred ccccHHHHHHHHHHhCCCCeEEEEEC
Confidence 56799999999999999887777753
No 166
>PRK08840 replicative DNA helicase; Provisional
Probab=35.37 E-value=1.5e+02 Score=26.25 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeechHHH
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDLWSKM 175 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~~~~~ 175 (247)
..+....+.++.+|++++|++|=+...-
T Consensus 352 ~ei~~isr~LK~lAkel~ipVi~LsQLn 379 (464)
T PRK08840 352 LEIAEISRSLKALAKELNVPVVALSQLN 379 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 3467888999999999999998776443
No 167
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=35.27 E-value=90 Score=25.32 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=38.2
Q ss_pred HHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 47 RWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
....+.++.+.. -+.+-.+++|.+|+...-.. .....-.++.+.++++++.+++++
T Consensus 155 ~~a~~n~~~I~~-----~~gvd~i~~G~~Dls~slg~--~~~~~~pev~~ai~~v~~a~~~~G 210 (267)
T PRK10128 155 KTALDNLDEILD-----VEGIDGVFIGPADLSASLGY--PDNAGHPEVQRIIETSIRRIRAAG 210 (267)
T ss_pred HHHHHhHHHHhC-----CCCCCEEEECHHHHHHHcCC--CCCCCCHHHHHHHHHHHHHHHHcC
Confidence 344455566554 36778888999998653221 122345678899999999999994
No 168
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=35.25 E-value=30 Score=27.61 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=28.8
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEE
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIF 71 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~ 71 (247)
|++|+++|||+.+.++..+- + ..-.++-.|+=..... +.++++.. .+|+|++.
T Consensus 179 R~NvlLlGDslgD~~Ma~G~-~--------~~~~~lkIGFLn~~ve---~~l~~Y~~-----~yDIVlv~ 231 (246)
T PF05822_consen 179 RTNVLLLGDSLGDLHMADGV-P--------DEENVLKIGFLNDKVE---ENLEKYLE-----AYDIVLVD 231 (246)
T ss_dssp --EEEEEESSSGGGGTTTT--S----------SEEEEEEEE-SSHH---HHHHHHHC-----CSSEEEET
T ss_pred CCcEEEecCccCChHhhcCC-C--------ccccEEEEEecccCHH---HHHHHHHh-----cCCEEEEC
Confidence 67899999999986543321 1 0112333333223333 45666665 68999984
No 169
>PRK01254 hypothetical protein; Provisional
Probab=35.16 E-value=3.4e+02 Score=25.50 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=54.6
Q ss_pred eEEEEcccccccccCCCcHH-HHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc-ccccc
Q 025869 4 QIVLFGDSITQQSFGSAGWG-AALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN-DAALF 80 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~-~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N-D~~~~ 80 (247)
-|++-||...++. ++. ..+.+.+. .++.|--.+...|.+.. -+.++- +|.+.+.-.++| |...+
T Consensus 42 iilVtGDAYVDHP----sFG~AiigR~Le~~G~rVgIiaQPdw~~~~---df~~lG------~PrLffgVsaGn~DSMvn 108 (707)
T PRK01254 42 IIIVTGDAYVDHP----SFGMAIIGRMLEAQGFRVGIIAQPDWSSKD---DFMRLG------KPNLFFGVTAGNMDSMIN 108 (707)
T ss_pred EEEEeCcccccCc----cchHHHHHHHHHHcCCeEEEEeCCCCCChH---HHHHhC------CCcEEEEeccccHHHHHH
Confidence 3789999999754 332 33444442 23666666667666542 233322 678766654444 53221
Q ss_pred C-------------CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 81 G-------------RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 81 ~-------------~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
+ .+++..+..++. +.....+.+|+.+|++.||+-+.
T Consensus 109 ~YTa~kk~R~~DaYtPgg~~g~RPdr---A~ivy~~~~r~~f~~~pvilGGi 157 (707)
T PRK01254 109 RYTADRKLRHDDAYTPDNVAGKRPDR---ATLVYTQRCKEAYKDVPVILGGI 157 (707)
T ss_pred hcccccccccccCcCCCCCCCCCCCh---hHHHHHHHHHHHCCCCCEEeccc
Confidence 0 112223333443 34455667777788887777665
No 170
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=34.91 E-value=1.3e+02 Score=24.20 Aligned_cols=76 Identities=12% Similarity=0.038 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCee
Q 025869 90 PVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFI 169 (247)
Q Consensus 90 ~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~v 169 (247)
+.++....+..+...+.+. +.++|++.....-. .. .+. ..+........+..+...++.+|.++++.+|
T Consensus 114 ~~~~l~~~L~~l~~~l~~~--~ikLIVIDSIaalf---r~----e~~--~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVv 182 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSES--KIKLIVIDSIAALF---RS----EFS--GRGDLAERQRMLARLARILKRLARKYNIAVV 182 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHS--CEEEEEEETSSHHH---HH----HSG--STTTHHHHHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHhhcccc--ceEEEEecchHHHH---HH----HHc--cchhhHHHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4555666666665666554 78888887744211 00 010 0011122345677888899999999999988
Q ss_pred echHHHH
Q 025869 170 DLWSKMQ 176 (247)
Q Consensus 170 D~~~~~~ 176 (247)
=.+....
T Consensus 183 vTNqv~~ 189 (256)
T PF08423_consen 183 VTNQVTT 189 (256)
T ss_dssp EEEEECS
T ss_pred eeceeee
Confidence 6665543
No 171
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=34.79 E-value=56 Score=20.89 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=20.1
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEec
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLR 39 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~ 39 (247)
++++++|-|.-. +...++...|+.+.+.+..
T Consensus 40 K~VLViGaStGy------GLAsRIa~aFg~gA~TiGV 70 (78)
T PF12242_consen 40 KKVLVIGASTGY------GLASRIAAAFGAGADTIGV 70 (78)
T ss_dssp SEEEEES-SSHH------HHHHHHHHHHCC--EEEEE
T ss_pred ceEEEEecCCcc------cHHHHHHHHhcCCCCEEEE
Confidence 489999999873 6777888887655444443
No 172
>PRK03673 hypothetical protein; Provisional
Probab=34.74 E-value=1.2e+02 Score=26.25 Aligned_cols=68 Identities=18% Similarity=0.075 Sum_probs=43.5
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHh-cccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~-~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
||-.|+.+||=+. .|.-..+-...|+..+ ..++++......+..-......+..... +.|+||+..|.
T Consensus 2 ~~v~Iis~GdEll-~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~-----~~DlVI~tGGl 70 (396)
T PRK03673 2 LRVEMLSTGDEVL-HGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQ-----HADVLIVNGGL 70 (396)
T ss_pred CEEEEEEecccCC-CCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhc-----cCCEEEEcCCC
Confidence 4557999999998 4432222233444433 2337777788888777766666665443 68999998775
No 173
>PLN00106 malate dehydrogenase
Probab=34.68 E-value=1.5e+02 Score=24.74 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=33.0
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
....|+||+..|....-. ....+.+ ..-+.++.+.+++.+|++.+++++.|-
T Consensus 84 l~~aDiVVitAG~~~~~g--------~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 84 LKGADLVIIPAGVPRKPG--------MTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred cCCCCEEEEeCCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 346799999888653310 0122333 334778888889999998666666554
No 174
>PRK08006 replicative DNA helicase; Provisional
Probab=34.54 E-value=1.4e+02 Score=26.42 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHhcCCCeeechHHH
Q 025869 149 MTGVYARQCIETAKDLGVPFIDLWSKM 175 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~vD~~~~~ 175 (247)
.+....+.++.+|++++|++|=+...-
T Consensus 360 ei~~isr~LK~lAkel~ipVi~LsQLn 386 (471)
T PRK08006 360 EIAEISRSLKALAKELQVPVVALSQLN 386 (471)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 467888899999999999998765443
No 175
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=34.32 E-value=1.7e+02 Score=25.33 Aligned_cols=28 Identities=32% Similarity=0.260 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeechHHH
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDLWSKM 175 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~~~~~ 175 (247)
..+....+.++.+|+++++++|=+...-
T Consensus 327 ~~~~~i~~~Lk~lAke~~i~Vi~lsQln 354 (421)
T TIGR03600 327 EELGGISRGLKALAKELDVPVVLLAQLN 354 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEecccC
Confidence 3456778889999999999998776543
No 176
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=34.16 E-value=1.1e+02 Score=25.03 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|...... ........+-...++.+++.+.+..|...+++++.|
T Consensus 65 ~dADiVIit~g~p~~~~-----~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP 117 (300)
T cd01339 65 AGSDVVVITAGIPRKPG-----MSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP 117 (300)
T ss_pred CCCCEEEEecCCCCCcC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 35799999888643211 000001123345567888888888888876666654
No 177
>PHA02542 41 41 helicase; Provisional
Probab=34.01 E-value=1.7e+02 Score=25.94 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeechHHHH
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDLWSKMQ 176 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~~~~~~ 176 (247)
..+....+.++.+|++++|++|=+...-.
T Consensus 327 ~ei~~Isr~LK~lAkel~vpVi~lsQLnR 355 (473)
T PHA02542 327 TYVKAIAEELRGLAVEHDVVVWTAAQTTR 355 (473)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEeeCc
Confidence 35678889999999999999987655443
No 178
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=33.90 E-value=2.1e+02 Score=21.71 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.+++.++...|.++||+++...
T Consensus 69 ~~~~~l~~~~~~~~iIvls~~~ 90 (216)
T PRK10840 69 TLIKYIKRHFPSLSIIVLTMNN 90 (216)
T ss_pred HHHHHHHHHCCCCcEEEEEecC
Confidence 4566667777888888887643
No 179
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=33.58 E-value=1.8e+02 Score=22.61 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhcCCCeeechHH
Q 025869 149 MTGVYARQCIETAKDLGVPFIDLWSK 174 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~vD~~~~ 174 (247)
.+..+.+.++++|+++++.++=+...
T Consensus 147 ~~~~~~~~L~~la~~~~~~ii~~~q~ 172 (242)
T cd00984 147 EVAEISRSLKLLAKELNVPVIALSQL 172 (242)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 35677788999999999998876543
No 180
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=33.57 E-value=82 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=26.3
Q ss_pred EEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 67 ATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 67 ~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.++|.+|+|--. -.+++++.++.+.+. ++.+++.++..
T Consensus 3 ~v~i~lGSN~g~---------------~~~~l~~A~~~L~~~-~~~~i~~~S~~ 40 (159)
T PRK10239 3 VAYIAIGSNLAS---------------PLEQVNAALKALGDI-PESRILAVSSF 40 (159)
T ss_pred EEEEEEeCchhh---------------HHHHHHHHHHHHhcC-CCCeEEEECCC
Confidence 478999999421 156788888888765 67667766644
No 181
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=33.49 E-value=1.4e+02 Score=24.79 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=29.7
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCC-CeEEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPI-MLVVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~-~~ivl~~~~ 120 (247)
+.|+|||..|....-. ....+.+.. -++.+...+.+..|. +.+++++.|
T Consensus 60 daDiVVitaG~~~k~g--------~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNP 112 (313)
T TIGR01756 60 DIDCAFLVASVPLKPG--------EVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNP 112 (313)
T ss_pred CCCEEEECCCCCCCcC--------CCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 6899999888753321 123333333 466777788888744 556666643
No 182
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.42 E-value=64 Score=25.28 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCCe-eechHHHHhcccccccccccccCCChh
Q 025869 150 TGVYARQCIETAKDLGVPF-IDLWSKMQETEGWQKKFLSDGLHLTEE 195 (247)
Q Consensus 150 ~~~~~~~~~~~a~~~~v~~-vD~~~~~~~~~~~~~~~~~Dg~Hp~~~ 195 (247)
+.+..+.++++|+++|+.+ ||-+-.+.. .+..||+|+.+.
T Consensus 56 ~~~~a~~l~~l~~~~gv~liINd~~dlA~------~~~adGVHLg~~ 96 (221)
T PRK06512 56 FQKQAEKLVPVIQEAGAAALIAGDSRIAG------RVKADGLHIEGN 96 (221)
T ss_pred HHHHHHHHHHHHHHhCCEEEEeCHHHHHH------HhCCCEEEECcc
Confidence 4466677888999999886 443332322 345789999854
No 183
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=32.85 E-value=2.2e+02 Score=23.46 Aligned_cols=62 Identities=27% Similarity=0.211 Sum_probs=36.4
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHh-cccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC-ccccc
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA-NDAAL 79 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~-~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~-ND~~~ 79 (247)
++++.||--.. + . ..+.+.. +.+.+|.-.|-=|..+......+.. .+|++.+|..|- |....
T Consensus 184 s~LlTGD~e~~-~----E--~~l~~~~~~l~~dVLkV~HHGS~tSss~~Fl~~-------v~Pk~AliS~G~~N~ygh 247 (293)
T COG2333 184 SFLLTGDLEEK-G----E--KLLKKYGPDLRADVLKVGHHGSKTSSSLAFLEA-------VKPKVALISSGRNNRYGH 247 (293)
T ss_pred eEEEecCCCch-h----H--HHHHhhCCCccceEEEeccCCccccCcHHHHHh-------cCCcEEEEEeeccCCCCC
Confidence 67777777663 1 2 3333333 3346677766655544433333333 479999999999 55554
No 184
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.52 E-value=1.6e+02 Score=24.57 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=32.4
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhH---HHHHHHHHHHHHHHhC-CCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEE---YGDNLKIMVQHLKRLS-PIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~---~~~~l~~~i~~~~~~~-p~~~ivl~~~~ 120 (247)
.+.|+||+..|.-.--. ....+. -.+-++++...+.+.. |++.+++++.|
T Consensus 75 ~~aDiVVitAG~~~~~g--------~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 128 (323)
T cd00704 75 KDVDVAILVGAFPRKPG--------MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNP 128 (323)
T ss_pred CCCCEEEEeCCCCCCcC--------CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 46799999888643321 112233 3344778888888884 99888887643
No 185
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=32.35 E-value=1.3e+02 Score=26.15 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=29.7
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
..+||+++++. |+.. +.+..+.+++.+.++++-+....++
T Consensus 91 ~lkPdvvffLG---DLfD-----eG~~~~~eEf~~~~~RfkkIf~~k~ 130 (410)
T KOG3662|consen 91 RLKPDVVFFLG---DLFD-----EGQWAGDEEFKKRYERFKKIFGRKG 130 (410)
T ss_pred ccCCCEEEEec---cccc-----cCccCChHHHHHHHHHHHHhhCCCC
Confidence 45899999987 5542 2355789999999999766666553
No 186
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=32.12 E-value=1.5e+02 Score=24.60 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=31.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCC-hhH---HHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVP-VEE---YGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~-~~~---~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|.-... +.+ .+. -.+.++.+.+.+.+..|+..+++.+.|
T Consensus 71 ~~aDiViitag~p~~~---------~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 71 AGSDIVIITAGVPRKE---------GMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred CCCCEEEEecCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 4679999988863321 112 222 234567777778888888877777754
No 187
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=31.99 E-value=78 Score=24.67 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCee-echHHHHhcccccccccccccCCChh
Q 025869 151 GVYARQCIETAKDLGVPFI-DLWSKMQETEGWQKKFLSDGLHLTEE 195 (247)
Q Consensus 151 ~~~~~~~~~~a~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~ 195 (247)
.+..+.++.+|+++++.|+ |-+--+.. ....||+|..+.
T Consensus 51 ~~~a~~~~~lc~~~~v~liINd~~dlA~------~~~AdGVHlGq~ 90 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIINDRVDLAL------AVGADGVHLGQD 90 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEecCcHHHHH------hCCCCEEEcCCc
Confidence 4667888999999999964 33332332 346799998776
No 188
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=31.95 E-value=1.7e+02 Score=25.59 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 95 GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 95 ~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.+++.++..++.+.+++.++++.|
T Consensus 184 ~~~le~a~~~a~~~~~~vk~lll~nP 209 (447)
T PLN02607 184 PQALEAAYQEAEAANIRVRGVLITNP 209 (447)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCC
Confidence 34566667777777667777777544
No 189
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=31.83 E-value=1.7e+02 Score=20.04 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 95 GDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 95 ~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
......+++.++..+.+.+|+++.-..
T Consensus 51 ~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 51 EDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred chhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 456779999999999999999987744
No 190
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=31.76 E-value=2.9e+02 Score=22.59 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=57.2
Q ss_pred CCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 43 GYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG-RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 43 G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
|.++.......+--.+ ...++++| |.++.. ..+.........=...|.++++..++++.+ |++...-.
T Consensus 28 g~~t~~~k~yIDfAa~----~G~eYvlv-----D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVg--i~lw~~~~ 96 (273)
T PF10566_consen 28 GATTETQKRYIDFAAE----MGIEYVLV-----DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVG--IWLWYHSE 96 (273)
T ss_dssp SSSHHHHHHHHHHHHH----TT-SEEEE-----BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-E--EEEEEECC
T ss_pred CCCHHHHHHHHHHHHH----cCCCEEEe-----ccccccccccccccccccCCccCHHHHHHHHHHcCCC--EEEEEeCC
Confidence 6677766555554333 37888888 443321 000001111111124799999999999544 44443321
Q ss_pred C------CcchhhhHhhhh--hhhcc--cccchh-hhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcc---cccccccc
Q 025869 122 V------DEDGRMEYAKSL--YGEKA--MKLPER-TNEMTGVYARQCIETAKDLGVPFIDLWSKMQETE---GWQKKFLS 187 (247)
Q Consensus 122 ~------~~~~~~~~~~~~--~~~~~--~~~~~~-~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~---~~~~~~~~ 187 (247)
- .+......+..+ .|... .+...+ ....++-|.+++++.|+. + ..||++......+ .+...+..
T Consensus 97 ~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~-~-LmvnfHg~~kPtG~~RTyPN~mT~ 174 (273)
T PF10566_consen 97 TGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY-K-LMVNFHGATKPTGLRRTYPNLMTR 174 (273)
T ss_dssp HTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT-T--EEEETTS---TTHHHCSTTEEEE
T ss_pred cchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc-C-cEEEecCCcCCCcccccCccHHHH
Confidence 1 000111111111 11110 111122 233455666666555543 3 5788887766543 24445556
Q ss_pred cccCCChh
Q 025869 188 DGLHLTEE 195 (247)
Q Consensus 188 Dg~Hp~~~ 195 (247)
.|++=.+.
T Consensus 175 EgVrG~E~ 182 (273)
T PF10566_consen 175 EGVRGQEY 182 (273)
T ss_dssp --S--GGG
T ss_pred HHhhhhhh
Confidence 66665554
No 191
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=31.66 E-value=77 Score=28.92 Aligned_cols=51 Identities=10% Similarity=-0.042 Sum_probs=32.3
Q ss_pred EEEccCccccccC-----C---CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 69 TIFFGANDAALFG-----R---TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 69 ii~~G~ND~~~~~-----~---~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
+|++|+||+..+. . .+......-..+...++.+++.+++. +..+-+++-..
T Consensus 448 f~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~--g~~v~vCGe~A 506 (575)
T PRK11177 448 FFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAE--GKWTGMCGELA 506 (575)
T ss_pred EEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhc--CCeEEEeCCCC
Confidence 5678999986521 0 01112223455777899999999988 65577766543
No 192
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.39 E-value=1.5e+02 Score=19.11 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeech
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLW 172 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~ 172 (247)
..++.++.+++. .++++++..- . ...+.+.+...|++++++++...
T Consensus 15 G~~~v~kai~~g--kaklViiA~D----~------------------------~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 15 GTKQTVKALKRG--SVKEVVVAED----A------------------------DPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred cHHHHHHHHHcC--CeeEEEEECC----C------------------------CHHHHHHHHHHHHHcCCCEEEEC
Confidence 456677777765 6667777550 0 11344556677999999987775
No 193
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=31.29 E-value=2e+02 Score=22.03 Aligned_cols=63 Identities=13% Similarity=-0.031 Sum_probs=37.7
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC--
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-- 109 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-- 109 (247)
.++++++.|..= .... ......+ .+||+|.++. ........++++++.+++.+
T Consensus 111 ~G~~vi~LG~~v-p~e~---~v~~~~~----~~pd~v~lS~-----------------~~~~~~~~~~~~i~~l~~~~~~ 165 (197)
T TIGR02370 111 NGFDVIDLGRDV-PIDT---VVEKVKK----EKPLMLTGSA-----------------LMTTTMYGQKDINDKLKEEGYR 165 (197)
T ss_pred CCcEEEECCCCC-CHHH---HHHHHHH----cCCCEEEEcc-----------------ccccCHHHHHHHHHHHHHcCCC
Confidence 348888887653 2232 2333333 3899988864 11222446788999999984
Q ss_pred CCCeEEEEcC
Q 025869 110 PIMLVVLITP 119 (247)
Q Consensus 110 p~~~ivl~~~ 119 (247)
++.+|++-+.
T Consensus 166 ~~v~i~vGG~ 175 (197)
T TIGR02370 166 DSVKFMVGGA 175 (197)
T ss_pred CCCEEEEECh
Confidence 3466666554
No 194
>PRK05442 malate dehydrogenase; Provisional
Probab=31.23 E-value=2e+02 Score=24.15 Aligned_cols=51 Identities=8% Similarity=0.008 Sum_probs=31.8
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhC-CCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLS-PIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~-p~~~ivl~~~~ 120 (247)
..+.|+|||..|.-.--. ....+.+ .+-++++.+.+.+.. |++.+++++.|
T Consensus 78 ~~daDiVVitaG~~~k~g--------~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 78 FKDADVALLVGARPRGPG--------MERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred hCCCCEEEEeCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 446799999887643210 1123333 344777888888866 68877777744
No 195
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.10 E-value=1.5e+02 Score=19.15 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeech
Q 025869 98 LKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLW 172 (247)
Q Consensus 98 l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~ 172 (247)
..+.++.++.. .+++|++..- . .....+.+...|+.++|+++...
T Consensus 13 ~~~vlkaIk~g--kakLViiA~D----a------------------------~~~~~k~i~~~c~~~~Vpv~~~~ 57 (82)
T PRK13601 13 AKQTLKAITNC--NVLQVYIAKD----A------------------------EEHVTKKIKELCEEKSIKIVYID 57 (82)
T ss_pred hHHHHHHHHcC--CeeEEEEeCC----C------------------------CHHHHHHHHHHHHhCCCCEEEeC
Confidence 45666777765 6777777551 0 11344556677999999997554
No 196
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=31.04 E-value=3.7e+02 Score=23.67 Aligned_cols=66 Identities=20% Similarity=0.106 Sum_probs=37.6
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
+|+-+||+|=. +-......+.++.. .++..++.-|...+++.+....+... .--+-.++.+++-|-
T Consensus 141 QkigIF~gaGv----gk~~L~~~ia~~~~--~~v~Vfa~iGeR~rE~~ef~~~~~~~---~~l~rtvlv~~~ade 206 (436)
T PRK02118 141 QKIPIFSVSGE----PYNALLARIALQAE--ADIIILGGMGLTFDDYLFFKDTFENA---GALDRTVMFIHTASD 206 (436)
T ss_pred CEEEEEeCCCC----CHHHHHHHHHHhhC--CCeEEEEEeccchhHHHHHHHHHhhC---CCcceEEEEEECCCC
Confidence 47888888732 22233344444444 45667777888888877777766653 223444444444443
No 197
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=30.38 E-value=2.2e+02 Score=23.76 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCCcEEEEEccCccccccCCCCCCCC-CChhHHHHH---HHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQH-VPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~-~~~~~~~~~---l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
...|+|+|..|..=- ++ ...+.+..| ++.+.+.+.+.+|+..+++++.|
T Consensus 68 ~~aDiVvitAG~prK---------pGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNP 120 (313)
T COG0039 68 KGADIVVITAGVPRK---------PGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120 (313)
T ss_pred cCCCEEEEeCCCCCC---------CCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCc
Confidence 356788877655422 22 234445444 45666677777888866666665
No 198
>PRK06904 replicative DNA helicase; Validated
Probab=30.14 E-value=2.1e+02 Score=25.40 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHhcCCCeeechHH
Q 025869 149 MTGVYARQCIETAKDLGVPFIDLWSK 174 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~vD~~~~ 174 (247)
.+....+.++.+|+++++++|=+...
T Consensus 358 ei~~isr~LK~lAkel~ipVi~lsQL 383 (472)
T PRK06904 358 EIAEISRSLKALAKELKVPVVALSQL 383 (472)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 45678888999999999999876544
No 199
>PRK06223 malate dehydrogenase; Reviewed
Probab=29.71 E-value=1.3e+02 Score=24.76 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=30.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|.-... +.........-...++++++.+.+..|+..+++.+.|
T Consensus 69 ~~aDiVii~~~~p~~~-----~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 121 (307)
T PRK06223 69 AGSDVVVITAGVPRKP-----GMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNP 121 (307)
T ss_pred CCCCEEEECCCCCCCc-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 3578888887753211 0000001123345577778888888888766666554
No 200
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=29.69 E-value=2e+02 Score=20.14 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCCeeechHH
Q 025869 153 YARQCIETAKDLGVPFIDLWSK 174 (247)
Q Consensus 153 ~~~~~~~~a~~~~v~~vD~~~~ 174 (247)
..+.+++++++.|++++-....
T Consensus 27 a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 27 AAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp CHHHHHHHHHHHTSEEEEEGGG
T ss_pred HHHHHHHHHHHHCCCEEecCcc
Confidence 3466778899999999877644
No 201
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=29.08 E-value=3e+02 Score=23.21 Aligned_cols=67 Identities=22% Similarity=0.164 Sum_probs=38.3
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCc-EEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KAD-VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~-v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~ 78 (247)
++++++++..+ +|. ++...+...+.. +.+ +....+.-..+. +...+.++... +||+|++..-..|..
T Consensus 149 k~v~ii~~~~~-yg~---~~~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~v~~i~~~----~~d~v~~~~~~~~~~ 217 (366)
T COG0683 149 KRVAIIGDDYA-YGE---GLADAFKAALKALGGEVVVEEVYAPGDTD-FSALVAKIKAA----GPDAVLVGGYGPDAA 217 (366)
T ss_pred cEEEEEeCCCC-cch---hHHHHHHHHHHhCCCeEEEEEeeCCCCCC-hHHHHHHHHhc----CCCEEEECCCCccch
Confidence 47899998888 443 677777777642 232 222333222222 44556666654 899777655555543
No 202
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.83 E-value=2.2e+02 Score=24.09 Aligned_cols=52 Identities=15% Similarity=-0.008 Sum_probs=32.0
Q ss_pred HHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 48 WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
...+++..+.+. ...+|+|+| |....+ -.+..++++.+|+.+|+..|+.-..
T Consensus 108 ~d~er~~~L~~~--~~g~D~ivi-----D~AhGh-------------s~~~i~~ik~ik~~~P~~~vIaGNV 159 (346)
T PRK05096 108 ADFEKTKQILAL--SPALNFICI-----DVANGY-------------SEHFVQFVAKAREAWPDKTICAGNV 159 (346)
T ss_pred HHHHHHHHHHhc--CCCCCEEEE-----ECCCCc-------------HHHHHHHHHHHHHhCCCCcEEEecc
Confidence 334555555542 235677777 544322 4567788999999998876555443
No 203
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=28.46 E-value=2.2e+02 Score=23.82 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=32.3
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhC-CCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLS-PIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~-p~~~ivl~~~~ 120 (247)
..+.|+||+..|...-.. ....+.+ .+-++.+.+.+.+.. |++.+++++.|
T Consensus 73 ~~~aDiVVitAG~~~~~~--------~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNP 127 (324)
T TIGR01758 73 FTDVDVAILVGAFPRKEG--------MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNP 127 (324)
T ss_pred hCCCCEEEEcCCCCCCCC--------CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 346899999888753311 0123333 334777888888884 88877777743
No 204
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=28.38 E-value=1.5e+02 Score=23.78 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=31.2
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
+.|+|++..|.-.... .........-..-++++.+.+++..|++.+++.+.|
T Consensus 70 ~aDiVv~t~~~~~~~g-----~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP 121 (263)
T cd00650 70 DADVVIITAGVGRKPG-----MGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNP 121 (263)
T ss_pred CCCEEEECCCCCCCcC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 5688888766432210 000011223344577888888889999987777643
No 205
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=28.21 E-value=1.4e+02 Score=24.14 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=34.3
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCc-EEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKAD-VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAND 76 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~-v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND 76 (247)
+||.|++||+++... .|... .+.+.. .+ ++..|-|..... ........... ...+|+|..+...
T Consensus 179 lrP~VV~FGE~lp~~-----~~~~a-~~~~~~-aDlllviGTSl~V~p-a~~l~~~a~~~----g~~viiIN~~~t~ 243 (260)
T cd01409 179 LKPDVVFFGENVPRD-----RVVTA-AARLAE-ADALLVLGSSLMVYS-GYRFVLAAAEA----GLPIAIVNIGPTR 243 (260)
T ss_pred ECCCEEECCCCCCHH-----HHHHH-HHHHhc-CCEEEEeCcCceecc-hhhHHHHHHHC----CCcEEEEcCCCCC
Confidence 489999999998841 23322 333322 34 456777765432 11222222222 5677888766543
No 206
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=27.86 E-value=1.2e+02 Score=23.58 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCCCe-eechHHHHhcccccccccccccCCChhH
Q 025869 150 TGVYARQCIETAKDLGVPF-IDLWSKMQETEGWQKKFLSDGLHLTEEG 196 (247)
Q Consensus 150 ~~~~~~~~~~~a~~~~v~~-vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G 196 (247)
..+....+.++++++++.+ |+-+..+.. .+..||+|+.+.-
T Consensus 48 ~~~la~~l~~~~~~~~~~liInd~~~lA~------~~~adGVHlg~~d 89 (211)
T PRK03512 48 VEADVVAAIALGRRYQARLFINDYWRLAI------KHQAYGVHLGQED 89 (211)
T ss_pred HHHHHHHHHHHHHHhCCeEEEeCHHHHHH------HcCCCEEEcChHh
Confidence 3455566677888888875 443333332 3467999998654
No 207
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=27.83 E-value=1.4e+02 Score=25.34 Aligned_cols=27 Identities=7% Similarity=-0.064 Sum_probs=16.8
Q ss_pred HHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 47 RWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
..+...+.++... +||+|++.+...|.
T Consensus 175 ~Df~~~l~~i~~~----~pD~V~~~~~g~~~ 201 (374)
T TIGR03669 175 SQFSSTIQNIQKA----DPDFVMSMLVGANH 201 (374)
T ss_pred chHHHHHHHHHHc----CCCEEEEcCcCCcH
Confidence 3444556666654 89999986544443
No 208
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.81 E-value=2.4e+02 Score=21.94 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCCeeechHHHH
Q 025869 152 VYARQCIETAKDLGVPFIDLWSKMQ 176 (247)
Q Consensus 152 ~~~~~~~~~a~~~~v~~vD~~~~~~ 176 (247)
+-...++..|+++|+.+|.+-.+..
T Consensus 135 EEa~~~Rne~~k~gislvpLvaPsT 159 (268)
T KOG4175|consen 135 EEAETLRNEARKHGISLVPLVAPST 159 (268)
T ss_pred HHHHHHHHHHHhcCceEEEeeCCCC
Confidence 3345667788999999988865543
No 209
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.76 E-value=2.6e+02 Score=20.80 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcc
Q 025869 93 EYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED 125 (247)
Q Consensus 93 ~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~ 125 (247)
....+|.++.+.+...+...+++.++.-|-.+.
T Consensus 70 ~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DT 102 (174)
T PF02630_consen 70 TTLANLSQLQKQLGEEGKDVQFVFISVDPERDT 102 (174)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-
T ss_pred HHHHHHHHHHHHhhhccCceEEEEEEeCCCCCC
Confidence 345678888888888766788999998776554
No 210
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=27.66 E-value=1.8e+02 Score=22.26 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCCeEEEEcCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+++.+++..|++++++++..
T Consensus 66 ~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 66 QRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHHHHCCCCeEEEEECC
Confidence 488889999999999998764
No 211
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=27.62 E-value=2.3e+02 Score=23.94 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=30.1
Q ss_pred HHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEE
Q 025869 48 WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (247)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~ 117 (247)
...+++..+.+. ...+|+|+| |....+ -.++.+.++.+|+.+|+..|+.-
T Consensus 107 ~d~er~~~L~~a--~~~~d~ivi-----D~AhGh-------------s~~~i~~ik~ir~~~p~~~viaG 156 (343)
T TIGR01305 107 NDLEKMTSILEA--VPQLKFICL-----DVANGY-------------SEHFVEFVKLVREAFPEHTIMAG 156 (343)
T ss_pred HHHHHHHHHHhc--CCCCCEEEE-----ECCCCc-------------HHHHHHHHHHHHhhCCCCeEEEe
Confidence 334555555543 234677777 544322 45677888889988887644433
No 212
>PRK08156 type III secretion system protein SpaS; Validated
Probab=27.23 E-value=4e+02 Score=22.80 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHH-----hCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCC
Q 025869 93 EYGDNLKIMVQHLKR-----LSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVP 167 (247)
Q Consensus 93 ~~~~~l~~~i~~~~~-----~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~ 167 (247)
+.+...+++-+++.. .-|++.+|++.|..+.-+-. |......-..-..+-.+.....++++|+++||+
T Consensus 227 ~iK~r~R~~~re~a~~rm~~~Vp~AdVVItNPTH~AVALk-------Yd~~~~~AP~VvAKG~d~~A~~IreiA~e~~VP 299 (361)
T PRK08156 227 EIKSKRREAHQEILSEQVKSDIRNSRLIVANPTHIAIGIY-------FNPELAPIPFISVRETNQRALAVRAYAEKVGVP 299 (361)
T ss_pred HHHHHHHHHHHHHHHhHHhccCCCCcEEEECCCeEEEEEE-------ecCCCCCCCEEEEecCcHHHHHHHHHHHHCCCC
Confidence 355555555555443 34889999998875421110 110000111112333457788899999999999
Q ss_pred eeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHh
Q 025869 168 FIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 168 ~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
++.--..-..-.. ..-.|..= -+.=|+.+|+.+.-..+-
T Consensus 300 iven~pLARaLY~---~vevg~~I-P~ely~AVA~iLa~v~~l 338 (361)
T PRK08156 300 VVRDIKLARRLYK---THRRYSFV-SLEDLDEVLRLLIWLEQV 338 (361)
T ss_pred EeeCHHHHHHHHH---hCCCCCcC-CHHHHHHHHHHHHHHHHH
Confidence 9876543322100 00111111 234477888876554443
No 213
>KOG2126 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=27.19 E-value=1.1e+02 Score=29.20 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=51.1
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEE-ccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIF-FGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~-~G~ND~~~~~ 81 (247)
++++++||| .|...+-.++.+.+..--+++.+..+.+- ..++.+.+.....++|++|-. +|..=++.-.
T Consensus 155 k~vvflGDd---------TW~~LFp~~f~~s~s~pSfnv~DLdtVDn-~v~~~if~~l~s~dwdVlIAHfLGVDH~GHk~ 224 (895)
T KOG2126|consen 155 KSVVFLGDD---------TWTSLFPNQFNKSYSFPSFNVHDLDTVDN-GVIEKIFKSLNSKDWDVLIAHFLGVDHCGHKH 224 (895)
T ss_pred CeEEEecCc---------cHHHhChHhhcCCCCCCCCCCccccccch-HHHHHhhhhhccCchHHHHHHHhCcccccccC
Confidence 356666665 57777777776554444555555433211 233333333234578887764 5665554322
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEc
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLIT 118 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~-p~~~ivl~~ 118 (247)
++ .+.....-...|.++|+++-+.- -++-+++++
T Consensus 225 GP---dH~~M~~KL~qmD~vI~~ii~~mdedTlLvVmG 259 (895)
T KOG2126|consen 225 GP---DHPEMADKLVQMDRVINEIIKKMDEDTLLVVMG 259 (895)
T ss_pred CC---CCHHHHHHHHHHHHHHHHHHHHhccCeeEEEec
Confidence 21 11112222334556666555443 255566664
No 214
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=27.19 E-value=1.7e+02 Score=22.78 Aligned_cols=65 Identities=20% Similarity=0.113 Sum_probs=36.1
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
+||.|+++|+++.. .|.......-..+ -++..|-+.... .+......... ....+++|..+..+.
T Consensus 143 lrP~Vv~fgE~~p~------~~~~a~~~~~~~D-l~lvlGTSl~V~-p~~~l~~~~~~----~~~~~i~iN~~~~~~ 207 (218)
T cd01407 143 LRPDVVFFGESLPE------ELDEAAEALAKAD-LLLVIGTSLQVY-PAAGLPLYAPE----RGAPVVIINLEPTPA 207 (218)
T ss_pred cCCCeEECCCCCcH------HHHHHHHHHhcCC-EEEEeCCCcccc-cHHHHHHHHHH----CCCeEEEECCCCCCC
Confidence 58999999999874 2544443333322 255677665433 23333333222 256778887665443
No 215
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=27.12 E-value=57 Score=27.52 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHh-----CCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcC
Q 025869 91 VEEYGDNLKIMVQHLKRL-----SPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG 165 (247)
Q Consensus 91 ~~~~~~~l~~~i~~~~~~-----~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 165 (247)
..+.+...+++-+++... -|++.+|+..|..+.-+-. |......-.....+-.+.....++++|+++|
T Consensus 232 dP~iK~rrR~~~re~~~~~~~~~V~~A~vVItNPTH~AVAL~-------Y~~~~~~aP~vvAKG~d~~A~~Ir~~A~~~~ 304 (343)
T PF01312_consen 232 DPEIKSRRRQLQREMARRRMMAAVPKADVVITNPTHYAVALR-------YDPGEMPAPIVVAKGADELALRIREIAREHG 304 (343)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHT-SEEEEETTTEEEEEE-------EETTTCSSEEEEEEEECHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhhhhccCCcCcEEEECCcceeEEEE-------eCCCCCCCCEEeeeccHHHHHHHHHHHHHcC
Confidence 334555655555554432 2678899998875421110 1110001111122234477788999999999
Q ss_pred CCeeechHH
Q 025869 166 VPFIDLWSK 174 (247)
Q Consensus 166 v~~vD~~~~ 174 (247)
|+++.--..
T Consensus 305 VPiven~pL 313 (343)
T PF01312_consen 305 VPIVENPPL 313 (343)
T ss_dssp --EEE-HHH
T ss_pred CCeeeCHHH
Confidence 999876543
No 216
>COG2403 Predicted GTPase [General function prediction only]
Probab=27.08 E-value=1.2e+02 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.481 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEE
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLI 117 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~ 117 (247)
....++++.+.+++.+|++.|+..
T Consensus 282 ~~~kvrkI~~~I~~iNP~A~Vi~~ 305 (449)
T COG2403 282 MAEKVRKIVRNIEEINPKAEVILA 305 (449)
T ss_pred chHHHHHHHHHHHhhCCCcEEEec
Confidence 466899999999999999987776
No 217
>PRK07004 replicative DNA helicase; Provisional
Probab=26.98 E-value=2.1e+02 Score=25.24 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeechHH
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDLWSK 174 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~~~~ 174 (247)
..+....+.++.+|++++|++|=+...
T Consensus 347 ~ei~~Isr~LK~lAkel~ipVi~lsQL 373 (460)
T PRK07004 347 TEISEISRSLKSLAKELDVPVIALSQL 373 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 346688899999999999999866543
No 218
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.74 E-value=1.8e+02 Score=23.37 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeec
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDL 171 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~ 171 (247)
-.+.+.++++.+++. ++++|+..+.. ..+..+.+.++|++.|+.++.+
T Consensus 191 s~~~l~~l~~~ik~~--~v~~if~e~~~----------------------------~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 191 SPADIAAFQNAIKNR--QIDALIVNPQQ----------------------------ASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred CHHHHHHHHHHHHhC--CCCEEEeCCCC----------------------------CcHHHHHHHHHHHHcCCCEEee
Confidence 356789999999998 77788876611 0133344556788889988765
No 219
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=26.67 E-value=3.8e+02 Score=22.34 Aligned_cols=114 Identities=19% Similarity=0.277 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHHHHHHHHhCC-CCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCC
Q 025869 89 VPVEEYGDNLKIMVQHLKRLSP-IMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVP 167 (247)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~~~~p-~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~ 167 (247)
+.-+..+++|+-+++..+.++- --.+++.+||-.++..... -+|.+.|+.
T Consensus 29 iGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~-----------------------------IIA~Emgvn 79 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAH-----------------------------IIANELGVN 79 (332)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHH-----------------------------HHHHHhcCC
Confidence 3556788999999999988762 2357777777765543111 123444433
Q ss_pred ee-----------echHHHHhcccccccccccccCC-ChhHHHHHHHHHHHHHHhc----CCCCCCCCCCCCCCCCCCCC
Q 025869 168 FI-----------DLWSKMQETEGWQKKFLSDGLHL-TEEGNAVVHKEVVEVFSVA----GLSSEEMPYDFPHHSQIDAK 231 (247)
Q Consensus 168 ~v-----------D~~~~~~~~~~~~~~~~~Dg~Hp-~~~G~~~iA~~l~~~l~~~----~~~~~~~p~~~p~~~~~~~~ 231 (247)
+- |+-..+..- .....++.|-+|= ++.-.+.+-.++.+.--.. +....++....|+|.=+.+|
T Consensus 80 ~k~tsGp~leK~gDlaaiLt~L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 80 LKITSGPALEKPGDLAAILTNL-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred eEecccccccChhhHHHHHhcC-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 32 333333321 1234678899984 4433333333333322222 66667778899999877765
Q ss_pred C
Q 025869 232 N 232 (247)
Q Consensus 232 ~ 232 (247)
.
T Consensus 159 T 159 (332)
T COG2255 159 T 159 (332)
T ss_pred c
Confidence 4
No 220
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=26.63 E-value=2.2e+02 Score=22.48 Aligned_cols=63 Identities=19% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCc-EEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKAD-VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAND 76 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~-v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND 76 (247)
+||.|++||+++.. .+.....+... ..+ ++..|-|..... +.... +.... ...+|+|..+...
T Consensus 150 lrP~Vv~FGE~lp~------~~~~~~~~~~~-~aDlllvvGTSl~V~p-a~~l~-~~~~~----~~~~v~iN~~~~~ 213 (235)
T cd01408 150 VKPDIVFFGESLPS------RFFSHMEEDKE-EADLLIVIGTSLKVAP-FASLP-SRVPS----EVPRVLINREPVG 213 (235)
T ss_pred ccCcEEECCCCCCH------HHHHHHHHHHh-cCCEEEEECCCCeecc-HHHHH-HHHhC----CCcEEEEeCCCCC
Confidence 58999999999874 23333333332 233 446777765433 22222 22222 3567778765443
No 221
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=26.37 E-value=3e+02 Score=21.17 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=27.8
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.+||++++-++.-+.. =-+.++.+++..|.+++++++...
T Consensus 45 ~~pdvvl~Dl~mP~~~-------------------G~e~~~~l~~~~p~~~vvvlt~~~ 84 (211)
T COG2197 45 LKPDVVLLDLSMPGMD-------------------GLEALKQLRARGPDIKVVVLTAHD 84 (211)
T ss_pred cCCCEEEEcCCCCCCC-------------------hHHHHHHHHHHCCCCcEEEEeccC
Confidence 4899999954333321 225677777888999999998744
No 222
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=26.15 E-value=1.9e+02 Score=23.49 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=42.3
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
||+++|.|=. .+..+.+.+.. +++++-....-...... +.+.+++. ..+||+||...|..+...-.
T Consensus 2 riLI~GasG~--------lG~~l~~~l~~~~~~v~~~~r~~~dl~d~-~~~~~~~~---~~~pd~Vin~aa~~~~~~ce- 68 (286)
T PF04321_consen 2 RILITGASGF--------LGSALARALKERGYEVIATSRSDLDLTDP-EAVAKLLE---AFKPDVVINCAAYTNVDACE- 68 (286)
T ss_dssp EEEEETTTSH--------HHHHHHHHHTTTSEEEEEESTTCS-TTSH-HHHHHHHH---HH--SEEEE------HHHHH-
T ss_pred EEEEECCCCH--------HHHHHHHHHhhCCCEEEEeCchhcCCCCH-HHHHHHHH---HhCCCeEeccceeecHHhhh-
Confidence 6888885433 34566666653 33444443322111111 12222222 13699998888776532100
Q ss_pred CCCCCCCChhHHH---HHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 83 TSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 83 ~~~~~~~~~~~~~---~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+...+. .....+.+.++.. ++++|.++.-
T Consensus 69 -----~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~STd 102 (286)
T PF04321_consen 69 -----KNPEEAYAINVDATKNLAEACKER--GARLIHISTD 102 (286)
T ss_dssp -----HSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEEEG
T ss_pred -----hChhhhHHHhhHHHHHHHHHHHHc--CCcEEEeecc
Confidence 01222233 3445666677776 7788888764
No 223
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=26.12 E-value=2.4e+02 Score=21.75 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=33.8
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHh---c-----ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEcc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAY---C-----RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~---~-----~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G 73 (247)
+.||+++|+.+.. .....+...+ . ..+.++-..-+|... .++..++.+..- ++++.++..|
T Consensus 26 ~~Riifl~~~i~~------~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~-~GlaIyd~m~~~----~~~V~Ti~~G 94 (201)
T PRK14513 26 KDRIIFVGTPIES------QMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVY-AGLAIYDTMRYI----KAPVSTICVG 94 (201)
T ss_pred hCCEEEECCEEcH------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCchh-hHHHHHHHHHhc----CCCEEEEEEe
Confidence 4588899988875 3333333322 1 235555555566433 344566665543 6677776544
No 224
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=25.93 E-value=1.9e+02 Score=25.45 Aligned_cols=51 Identities=8% Similarity=-0.017 Sum_probs=31.2
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHH---HHHHHHHHHHHH-hCCCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKR-LSPIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~~-~~p~~~ivl~~~~ 120 (247)
..+.|+|||..|.-.-- .....+.+. +-++++.+.+.+ ..|++++++++.|
T Consensus 174 ~kdaDiVVitAG~prkp--------G~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 174 FQDAEWALLIGAKPRGP--------GMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred hCcCCEEEECCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 34568888877653211 112333333 346777888888 5889988888754
No 225
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.92 E-value=3.4e+02 Score=22.45 Aligned_cols=21 Identities=14% Similarity=-0.186 Sum_probs=12.6
Q ss_pred HHHHhhhhcCCCCCCCCcEEEEEcc
Q 025869 49 ALFLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 49 ~~~~l~~~~~~~~~~~~d~vii~~G 73 (247)
+...+.++... +||.|++...
T Consensus 182 ~s~~i~~i~~~----~~d~v~~~~~ 202 (347)
T cd06335 182 MTAQLLRAKAA----GADAIIIVGN 202 (347)
T ss_pred HHHHHHHHHhC----CCCEEEEEec
Confidence 33445555544 7888888643
No 226
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=25.61 E-value=95 Score=29.38 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=30.4
Q ss_pred EEEccCccccccC--CCCCC------CCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 69 TIFFGANDAALFG--RTSER------QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 69 ii~~G~ND~~~~~--~~~~~------~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
++.+|+||+..+. ..... ....-..+...++.+++.+++. +..+-+++-..
T Consensus 614 F~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~--g~~v~vCGe~a 672 (748)
T PRK11061 614 FISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQH--GLPVSLCGEMA 672 (748)
T ss_pred EEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhC--cCEEEEcCCcc
Confidence 6789999985431 00010 1112233566777788888777 67777777654
No 227
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=25.28 E-value=3.2e+02 Score=23.89 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcCCC-CCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeech
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITPPP-VDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLW 172 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~ 172 (247)
|+..-..+++.+|+..|+ +|+.+..| .--.+.....+-+-.++ + ..+....+.-...+++.-.+.|++++..-
T Consensus 381 YIAat~~LvDmiRSyAaG--FIFTTSLPP~vl~GAleaVr~lk~~e--g--~~lR~~hqrnv~~~kq~l~~~GiPVi~~p 454 (570)
T KOG1360|consen 381 YIAATRKLVDMIRSYAAG--FIFTTSLPPMVLAGALEAVRILKSEE--G--RVLRRQHQRNVKYVKQLLMELGIPVIPNP 454 (570)
T ss_pred eehhhhhHHHHHHHhcCc--eEEecCCChHHHHhHHHHHHHHhhhh--h--HHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 777888999999999777 67766544 22222111110001111 0 11222333444556666777899888764
Q ss_pred HH
Q 025869 173 SK 174 (247)
Q Consensus 173 ~~ 174 (247)
..
T Consensus 455 SH 456 (570)
T KOG1360|consen 455 SH 456 (570)
T ss_pred cc
Confidence 43
No 228
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.94 E-value=2.2e+02 Score=23.55 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=28.7
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEe-cCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLL-RGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFF 72 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n-~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~ 72 (247)
+++.+++++.. .|. .+...+...+. .+.++.. .-+... ...+...+.++... ++|+|++..
T Consensus 145 ~~v~~l~~~~~-~g~---~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~i~~l~~~----~~d~v~~~~ 207 (347)
T cd06340 145 KTVALVHEDTE-FGT---SVAEAIKKFAKERGFEIVEDISYPAN-ARDLTSEVLKLKAA----NPDAILPAS 207 (347)
T ss_pred ceEEEEecCch-HhH---HHHHHHHHHHHHcCCEEEEeeccCCC-CcchHHHHHHHHhc----CCCEEEEcc
Confidence 46777777655 221 22333333332 2244432 222211 22333455555544 789888754
No 229
>PRK05636 replicative DNA helicase; Provisional
Probab=24.85 E-value=2.2e+02 Score=25.59 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeechHHH
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDLWSKM 175 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~~~~~ 175 (247)
..+....+.++.+|++++|++|=+...-
T Consensus 398 ~ei~~isr~LK~lAkel~ipVi~lsQLn 425 (505)
T PRK05636 398 QEVSEFSRQLKLLAKELDVPLIAISQLN 425 (505)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeecC
Confidence 3567888999999999999998765443
No 230
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=24.68 E-value=1.8e+02 Score=23.34 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=36.6
Q ss_pred HHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 47 RWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
......++.+.. -+.+-.+++|.||+...-.. .....-.++...+.++++.+++++
T Consensus 148 ~~av~n~~eI~a-----v~gvd~l~iG~~DLs~slG~--~~~~~~~~v~~a~~~v~~aa~a~G 203 (249)
T TIGR03239 148 QKGVDNVDEIAA-----VDGVDGIFVGPSDLAAALGH--LGNPNHPDVQKAIRHIFDRAAAHG 203 (249)
T ss_pred HHHHHhHHHHhC-----CCCCCEEEEChHHHHHHcCC--CCCCCCHHHHHHHHHHHHHHHHcC
Confidence 334455555553 25677889999998753221 112233567888999999999995
No 231
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=24.48 E-value=3e+02 Score=21.28 Aligned_cols=11 Identities=9% Similarity=0.431 Sum_probs=9.0
Q ss_pred eEEEEcccccc
Q 025869 4 QIVLFGDSITQ 14 (247)
Q Consensus 4 ~i~~~GDS~~~ 14 (247)
+|+++|.....
T Consensus 19 ~v~viG~~~~~ 29 (227)
T PF01915_consen 19 KVAVIGPNADN 29 (227)
T ss_dssp EEEEESTTTTS
T ss_pred EEEEEcCcccc
Confidence 79999987774
No 232
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=24.46 E-value=1.8e+02 Score=24.89 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCCee
Q 025869 155 RQCIETAKDLGVPFI 169 (247)
Q Consensus 155 ~~~~~~a~~~~v~~v 169 (247)
+.+.++|++++++++
T Consensus 209 r~v~~ia~ky~ipvv 223 (471)
T COG3033 209 KAVYEIAKKYDIPVV 223 (471)
T ss_pred HHHHHHHHHcCCcEE
Confidence 556788999999865
No 233
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=24.41 E-value=3.4e+02 Score=23.53 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHhcCCC-eeechHHHHh------cccccccccccccCCChhHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 025869 149 MTGVYARQCIETAKDLGVP-FIDLWSKMQE------TEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVAGLSSEEMPYD 221 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~-~vD~~~~~~~------~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~~~~~~~~p~~ 221 (247)
.++...+.+..++.-.|++ +||+-....- -......+..||-|-..+-.+.+=+.++-.+.+.+..-...-..
T Consensus 137 Ei~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLdkhl~l~maK~gk~n~~~~~k 216 (476)
T KOG2651|consen 137 EIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLDKHLLLAMAKEGKRNPQVVQK 216 (476)
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHHHHHHHHHHHhcccCchhhhc
Confidence 4556777777777777876 7887643221 11122355679999999989999999988888886655555566
Q ss_pred CCCCCCCCCCCccch
Q 025869 222 FPHHSQIDAKNPEKT 236 (247)
Q Consensus 222 ~p~~~~~~~~~~~~~ 236 (247)
.|.+..+..+++..+
T Consensus 217 sp~Hlpi~~v~~v~s 231 (476)
T KOG2651|consen 217 SPRHLPIHVVRWVDS 231 (476)
T ss_pred CCCCCCccccccCCh
Confidence 676777777777763
No 234
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=24.33 E-value=2.7e+02 Score=19.91 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.+..+.+.+++.. +..++++.|-
T Consensus 42 ~~~~l~~~i~~~~--i~~iVvGlP~ 64 (138)
T PRK00109 42 DWDRLEKLIKEWQ--PDGLVVGLPL 64 (138)
T ss_pred HHHHHHHHHHHhC--CCEEEEeccC
Confidence 4666777777774 4467777654
No 235
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=24.26 E-value=2.9e+02 Score=20.18 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHhcCCCe--ee--chHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 149 MTGVYARQCIETAKDLGVPF--ID--LWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~--vD--~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
.++..++.+++.|++.++.+ .- ....+.+.... ..-..||+=.|+.|+-..+=++.++|+..
T Consensus 27 tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~-a~~~~dgiIINpga~THtSiAl~DAl~~~ 92 (146)
T PRK13015 27 TLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHE-ARGDVAGIVINPGAYTHTSVAIRDALAAL 92 (146)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHH-hhhcCCEEEEcchHHhhhHHHHHHHHHcC
Confidence 45678888889999887653 21 11223322111 11235999999999999999999999875
No 236
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.23 E-value=1.6e+02 Score=23.67 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCc
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~ 124 (247)
.+.+.++.++++ ++++|.++-.+...
T Consensus 190 ~~~~~~~~ak~~--ga~iI~IT~~~~s~ 215 (278)
T PRK11557 190 ELNLAADEALRV--GAKVLAITGFTPNA 215 (278)
T ss_pred HHHHHHHHHHHc--CCCEEEEcCCCCCc
Confidence 466788889988 78899998865433
No 237
>PRK05748 replicative DNA helicase; Provisional
Probab=24.20 E-value=3.8e+02 Score=23.50 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHhcCCCeeechHHHH
Q 025869 149 MTGVYARQCIETAKDLGVPFIDLWSKMQ 176 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~vD~~~~~~ 176 (247)
.+....+.++.+|+++++++|=+...-.
T Consensus 339 ~i~~i~~~LK~lAke~~i~vi~lsQlnr 366 (448)
T PRK05748 339 EVSEISRSLKALAKELKVPVIALSQLSR 366 (448)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEecccCh
Confidence 4667888999999999999987765433
No 238
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=24.10 E-value=4.1e+02 Score=22.57 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHH
Q 025869 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKM 175 (247)
Q Consensus 96 ~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~ 175 (247)
+-+++++..+++..|. ++++.+.. .+. ...+..+...+.|.+..+++|..+++.++=+.-..
T Consensus 181 kl~rRfek~~~Q~rp~--~vViDp~v-------~f~---------~G~s~s~vqv~~fi~~~rkla~~l~caIiy~hHts 242 (402)
T COG3598 181 KLYRRFEKILEQKRPD--FVVIDPFV-------AFY---------EGKSISDVQVKEFIKKTRKLARNLECAIIYIHHTS 242 (402)
T ss_pred HHHHHHHHHHHHhCCC--eEEEcchh-------hhc---------CCccchhHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4577888888888665 67776632 111 11223455678899999999999988766554443
Q ss_pred H
Q 025869 176 Q 176 (247)
Q Consensus 176 ~ 176 (247)
.
T Consensus 243 k 243 (402)
T COG3598 243 K 243 (402)
T ss_pred c
Confidence 3
No 239
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=24.05 E-value=4.1e+02 Score=21.82 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=56.5
Q ss_pred CceEEEEcccccccccCC---CcHHHHHHHHhcccCcEE------ec-CC---CCC--chHHHHHHhhhhcCCCCCCCCc
Q 025869 2 RPQIVLFGDSITQQSFGS---AGWGAALADAYCRKADVL------LR-GY---GGY--NTRWALFLLHHIFPLDNSNPPV 66 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~---~~~~~~l~~~~~~~~~v~------n~-g~---~G~--~t~~~~~~l~~~~~~~~~~~~d 66 (247)
.+||+.+=.+.. .||.+ ..|+=++- +-+++++ |. |+ -|. +..+..+.+..+... ...+.|
T Consensus 9 ~kRVLSIQShVv-hGYVGNkaAtFPLQll---GwdVD~insVqFSNHtGY~~~kG~~~~~~eL~dL~egl~~n-n~~~Y~ 83 (308)
T KOG2599|consen 9 TKRVLSIQSHVV-HGYVGNKAATFPLQLL---GWDVDVINSVQFSNHTGYAHVKGQVLNEEELEDLYEGLLLN-NLNKYD 83 (308)
T ss_pred CccEEEEeeeee-eeeccccccccchhhh---ccccccccceeeccccCCccccccccCHHHHHHHHHHHhhc-cccccc
Confidence 358999998888 66653 23332222 2223333 32 22 122 334444555555543 222455
Q ss_pred EEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcc
Q 025869 67 ATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDED 125 (247)
Q Consensus 67 ~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~ 125 (247)
.|+-.. .+...+.+.+..+++++++.+|+ ++|+.=|-+++.
T Consensus 84 ~vLTGY----------------~~n~~~l~~i~~iv~~lk~~np~--~~wv~DPVmGDn 124 (308)
T KOG2599|consen 84 AVLTGY----------------LPNVSFLQKIADIVKKLKKKNPN--LTWVCDPVMGDN 124 (308)
T ss_pred eeeeec----------------cCChhHHHHHHHHHHHHHhcCCC--eEEEeCccccCC
Confidence 544321 35566788899999999999877 666666655543
No 240
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=24.02 E-value=3e+02 Score=22.62 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=25.2
Q ss_pred HHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 49 ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 49 ~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
+...+.++... ++|+|++..... ....+++++++.+-..+++....
T Consensus 185 ~~~~v~~l~~~----~~d~i~~~~~~~---------------------~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 185 LSPLISKAKAA----GPDAVVVAGHFP---------------------DAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred hHHHHHHHHhc----CCCEEEECCcch---------------------hHHHHHHHHHHcCCCCCEEEEec
Confidence 33445555443 788888754222 24466677777654544554433
No 241
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=23.97 E-value=2.2e+02 Score=20.19 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechH
Q 025869 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWS 173 (247)
Q Consensus 95 ~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~ 173 (247)
+..+.++++.++.. ...+|++.-. .++......+...++.+.+++|+.++-+..
T Consensus 54 Rp~l~~ll~~~~~g--~vd~vvv~~l-----------------------dRl~R~~~d~~~~~~~l~~~~gv~l~~~~~ 107 (140)
T cd03770 54 RPGFNRMIEDIEAG--KIDIVIVKDM-----------------------SRLGRNYLKVGLYMEILFPKKGVRFIAIND 107 (140)
T ss_pred CHHHHHHHHHHHcC--CCCEEEEecc-----------------------chhccCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 55788999988876 3345555331 123333445555666666667998877654
No 242
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=23.94 E-value=2.7e+02 Score=23.04 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=40.4
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEe-cCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc-cccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLL-RGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN-DAAL 79 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n-~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N-D~~~ 79 (247)
.+|.+++.... .|. .+...+.+.+. .++++.. ..+.- +...+...+.++... ++|.|++..... |
T Consensus 139 ~~v~il~~d~~-~g~---~~~~~~~~~l~~~G~~vv~~~~~~~-~~~D~s~~i~~i~~~----~~d~v~~~~~~~~~--- 206 (347)
T cd06336 139 KKVALLGPNDA-YGQ---PWVAAYKAAWEAAGGKVVSEEPYDP-GTTDFSPIVTKLLAE----KPDVIFLGGPSPAP--- 206 (347)
T ss_pred ceEEEEccCCc-hhH---HHHHHHHHHHHHcCCEEeeecccCC-CCcchHHHHHHHHhc----CCCEEEEcCCCchH---
Confidence 36666765544 221 33333434332 1233432 22221 223333445555443 788887754333 2
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEc
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~ 118 (247)
...+++++++.+...+++.+.
T Consensus 207 ------------------~~~~~~~~~~~g~~~~~~~~~ 227 (347)
T cd06336 207 ------------------AALVIKQARELGFKGGFLSCT 227 (347)
T ss_pred ------------------HHHHHHHHHHcCCCccEEecc
Confidence 335666777665444454443
No 243
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=23.93 E-value=1.2e+02 Score=21.36 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhc
Q 025869 100 IMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDL 164 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 164 (247)
++.+.+-++ +.++|+.+.|...+.++...+.|+.-+.+-+....+.-+++---..+++.|+-.
T Consensus 58 EladeLpe~--~PRFvl~sYpt~t~DGr~stPL~~Iyw~P~~~~~e~~MmYAgak~~~~~~~~~~ 120 (143)
T KOG1736|consen 58 ELADELPER--QPRFVLYSYPTTTDDGRVSTPLCFIYWSPVGCKPEQQMMYAGAKNMLVQTAELT 120 (143)
T ss_pred HHHhhcccc--CCcEEEEECcccccCCcccccEEEEEecCccCCHHHHHHHHHHHHHHHHHhhhe
Confidence 556677777 455999999988888777776666433333444433333444444455555443
No 244
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.90 E-value=2.6e+02 Score=22.70 Aligned_cols=57 Identities=12% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCc
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDE 124 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~ 124 (247)
..|++++.+|..--+.. +.....+.++..+..+++.+.+++.+|++ |+++.--|+..
T Consensus 170 GaDiiv~H~GlT~gG~~---Ga~~~~sl~~a~~~~~~i~~aa~~v~~di-i~l~hGGPI~~ 226 (268)
T PF09370_consen 170 GADIIVAHMGLTTGGSI---GAKTALSLEEAAERIQEIFDAARAVNPDI-IVLCHGGPIAT 226 (268)
T ss_dssp T-SEEEEE-SS-------------S--HHHHHHHHHHHHHHHHCC-TT--EEEEECTTB-S
T ss_pred CCCEEEecCCccCCCCc---CccccCCHHHHHHHHHHHHHHHHHhCCCe-EEEEeCCCCCC
Confidence 67999999987754422 22245688999999999999999999887 44444445443
No 245
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=23.89 E-value=4.4e+02 Score=24.02 Aligned_cols=19 Identities=0% Similarity=0.031 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHHHHHhc
Q 025869 193 TEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 193 ~~~G~~~iA~~l~~~l~~~ 211 (247)
+..+-.++++....-|.+.
T Consensus 490 ~~~~~dR~~Rls~HlL~Qr 508 (600)
T KOG1625|consen 490 LQSNGDRLARLSSHLLTQR 508 (600)
T ss_pred CCcchHHHHHHHHHHhhcc
Confidence 6666778888888888887
No 246
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.82 E-value=2.1e+02 Score=23.01 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=35.6
Q ss_pred HHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 49 ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 49 ~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
....++.+.. -+.+-.+++|.||+...-... ....-.++...+.++++.+++++
T Consensus 157 av~ni~eI~a-----v~gvd~l~iG~~DLs~slG~~--~~~~~~~v~~a~~~v~~aa~~~G 210 (256)
T PRK10558 157 GVDNVDAIAA-----TEGVDGIFVGPSDLAAALGHL--GNASHPDVQKAIQHIFARAKAHG 210 (256)
T ss_pred HHHHHHHHhC-----CCCCcEEEECHHHHHHHcCCC--CCCCCHHHHHHHHHHHHHHHHcC
Confidence 3444555553 256788899999986532211 12233568888999999999984
No 247
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=23.81 E-value=3.4e+02 Score=25.26 Aligned_cols=61 Identities=28% Similarity=0.271 Sum_probs=32.5
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHh-cccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccc
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAY-CRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~-~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~ 78 (247)
++++.||.-.+ +.. .+.+.. ..+.++.-.+-=|..+....+.+++ .+|++++|..|.|...
T Consensus 576 ~~L~tGD~~~~------~E~-~l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~~-------v~P~~aiiS~g~~N~y 637 (662)
T TIGR00361 576 SWLLTGDLEAE------GEQ-EVMRVFPNIKADVLQVGHHGSKTSTSEELIQQ-------VQPKVAIISAGRNNRW 637 (662)
T ss_pred eEEEecCCCHH------HHH-HHHhcccCcCccEEEeCCCCCCCCChHHHHHh-------cCCCEEEEECCCCCCC
Confidence 57777777553 222 222222 2246677655544332211122332 3799999999986543
No 248
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=23.69 E-value=1.7e+02 Score=25.20 Aligned_cols=50 Identities=6% Similarity=-0.029 Sum_probs=29.6
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHH---HHHHHHHHHHHHhC-CCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLS-PIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~~~~-p~~~ivl~~~~ 120 (247)
.+.|+|||..|.-..- .....+.+. +-++++.+.+.+.. |++++++++.|
T Consensus 119 kdaDIVVitAG~prkp--------g~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 119 EDADWALLIGAKPRGP--------GMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred CCCCEEEECCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 4568888877653211 012333333 34667777787755 88877777754
No 249
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.67 E-value=41 Score=26.58 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhCCCCeEEEEcC
Q 025869 98 LKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 98 l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
=+++++.+++..|...+.++..
T Consensus 269 kd~a~E~~~a~spE~e~~~lnn 290 (315)
T COG4030 269 KDRAFEVLSAVSPETEIYILNN 290 (315)
T ss_pred HHHHHHHHHhhCcccceecccC
Confidence 4566667777667766666654
No 250
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=23.55 E-value=3e+02 Score=20.10 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhcCCCe--eec--hHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 149 MTGVYARQCIETAKDLGVPF--IDL--WSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~--vD~--~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
.+++..+.+++.|.+.|+.+ .-. ...+.+.... ..-..||+=.|+.|+-..+=++.++|+..
T Consensus 27 tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~-a~~~~dgiiINpga~THtSiAl~DAl~~~ 92 (146)
T PRK05395 27 TLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHE-ARDGADGIIINPGAYTHTSVALRDALAAV 92 (146)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHh-cccCCcEEEECchHHHHHHHHHHHHHHcC
Confidence 46688888889899888653 211 1222221111 11146999999999999999999999886
No 251
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=23.51 E-value=1.7e+02 Score=24.26 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=21.8
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 025869 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (247)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~ 122 (247)
++.++ .+.++++++..++. ++.+++...|..
T Consensus 50 Yp~~e-l~~l~~L~~~a~~~--~V~Fv~aisPg~ 80 (306)
T PF07555_consen 50 YPEEE-LAELKELADAAKAN--GVDFVYAISPGL 80 (306)
T ss_dssp --HHH-HHHHHHHHHHHHHT--T-EEEEEEBGTT
T ss_pred CCHHH-HHHHHHHHHHHHHc--CCEEEEEECccc
Confidence 34444 57899999999999 777888776544
No 252
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.40 E-value=3.2e+02 Score=22.85 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=31.5
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHH---HHHHHHHHHHhC-CCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLS-PIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~-p~~~ivl~~~~ 120 (247)
...|+||+..|.-..... ...+.+..| ++.+...+.+.. |++.+++++.|
T Consensus 77 ~~aDiVI~tAG~~~~~~~--------~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (325)
T cd01336 77 KDVDVAILVGAMPRKEGM--------ERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP 130 (325)
T ss_pred CCCCEEEEeCCcCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 468999999887543211 123444444 456777888885 68877777753
No 253
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=23.39 E-value=3.3e+02 Score=22.63 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCCeeechH
Q 025869 152 VYARQCIETAKDLGVPFIDLWS 173 (247)
Q Consensus 152 ~~~~~~~~~a~~~~v~~vD~~~ 173 (247)
+..+.++++.+++|+++.|...
T Consensus 273 e~~~~~~~~~~e~glPv~Dp~r 294 (301)
T PF07755_consen 273 EAKAAIERIEEELGLPVTDPLR 294 (301)
T ss_dssp HHHHHHHHHHHHH-S-EE-HHH
T ss_pred HHHHHHHHHHHHHCCCeeeccc
Confidence 5566778888999999999753
No 254
>PRK15029 arginine decarboxylase; Provisional
Probab=23.04 E-value=5.2e+02 Score=24.69 Aligned_cols=93 Identities=12% Similarity=0.107 Sum_probs=47.8
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
+|+++=|-........+.....+...+. .++++.. ..++ ..+... +.. ..++|+|++-+ ....
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~-a~s~---~dAl~~---l~~---~~~~DlVLLD~-----~LPd- 65 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIK-STSF---DDGFAI---LSS---NEAIDCLMFSY-----QMEH- 65 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEE-ECCH---HHHHHH---HHh---cCCCcEEEEEC-----CCCC-
Confidence 4788887774211111233445555553 2244432 2222 222222 221 12789999943 3211
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.+. .+.+.++++.+|+.++++.|++++...
T Consensus 66 --------~dG-~~~~~ell~~IR~~~~~iPIIlLTar~ 95 (755)
T PRK15029 66 --------PDE-HQNVRQLIGKLHERQQNVPVFLLGDRE 95 (755)
T ss_pred --------Ccc-chhHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 111 113467888888877788899988654
No 255
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=23.04 E-value=2.6e+02 Score=19.19 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeech
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLW 172 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~ 172 (247)
..+.+++.+...+.. .++++-.-|.+.... ..++. ...+.+++.++..|+.++|..
T Consensus 47 ~~R~i~~~aL~~~A~-~vil~HNHPsG~~~P------------------S~~D~-~~T~~l~~~~~~l~i~llDHi 102 (113)
T cd08071 47 HPREIFKEALRHNAA-AIILAHNHPSGDPTP------------------SREDI-ELTKRLKEAGELLGIRLLDHI 102 (113)
T ss_pred CHHHHHHHHHHHhhh-eEEEEeeCCCCCCCC------------------CHHHH-HHHHHHHHHHHHCCCEEeeEE
Confidence 356777666655433 355555544433211 11122 344777888999999999974
No 256
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.91 E-value=4.1e+02 Score=21.80 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHhC---CCCeEEEEcC
Q 025869 91 VEEYGDNLKIMVQHLKRLS---PIMLVVLITP 119 (247)
Q Consensus 91 ~~~~~~~l~~~i~~~~~~~---p~~~ivl~~~ 119 (247)
.+++.+.+++.++.+++++ |...+|+++.
T Consensus 11 A~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~ 42 (278)
T PRK14172 11 ALKIKEEIKNFVEERKENGLSIPKIASILVGN 42 (278)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEEEeCC
Confidence 4567778888888887654 4433444443
No 257
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=22.90 E-value=2.1e+02 Score=22.86 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=13.5
Q ss_pred HHhhhhcCCCCCCCCcEEEEEcc
Q 025869 51 FLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 51 ~~l~~~~~~~~~~~~d~vii~~G 73 (247)
...+++... +||+|++.+|
T Consensus 148 ~i~~~I~~s----~~dil~VglG 166 (243)
T PRK03692 148 ALFERIHAS----GAKIVTVAMG 166 (243)
T ss_pred HHHHHHHhc----CCCEEEEECC
Confidence 445555544 8999999875
No 258
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=22.61 E-value=2.1e+02 Score=22.34 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=34.2
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCc-EEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKAD-VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~-v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
+||.|+++|+++... .|. ...+.... .+ ++..|-|+....- ......... ....+|+|..+..+.
T Consensus 146 lrP~Vv~fgE~lp~~-----~~~-~a~~~~~~-~Dl~lvvGTSl~V~p~-~~l~~~a~~----~g~~~i~iN~~~~~~ 211 (222)
T cd01413 146 IRPDVVLFGEPLPQA-----LLR-EAIEAAKE-ADLFIVLGSSLVVYPA-NLLPLIAKE----NGAKLVIVNADETPF 211 (222)
T ss_pred cCCCEEECCCCCCHH-----HHH-HHHHHHhc-CCEEEEEccCCEeccH-hHHHHHHHH----cCCeEEEEcCCCCCC
Confidence 589999999988741 232 22233322 23 4567777653331 122211111 256788887766543
No 259
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=22.35 E-value=4.7e+02 Score=23.14 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=39.7
Q ss_pred cCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEc
Q 025869 39 RGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT 118 (247)
Q Consensus 39 ~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~ 118 (247)
+|..|.......++++++.+. ..+-.+|++ -|+.. +...+-..|+++++.....-|. -|||++
T Consensus 259 ~Gg~~~~~~k~sA~L~~lE~~--~~d~~fVfL----SdV~L----------D~~~vm~aL~kifqgy~~~pP~-~iIlcG 321 (525)
T KOG3818|consen 259 LGGDSKIAFKCSARLRSLEAE--NTDTSFVFL----SDVFL----------DDKKVMEALRKIFQGYKDAPPT-AIILCG 321 (525)
T ss_pred cCCcchhhhHHHHHHHHHHHh--CcCceEEEE----ehhcc----------ccHHHHHHHHHHHhhccCCCCe-EEEEec
Confidence 455555666677788877665 223344444 36653 4455666788887777765444 477777
Q ss_pred CC
Q 025869 119 PP 120 (247)
Q Consensus 119 ~~ 120 (247)
.-
T Consensus 322 ~F 323 (525)
T KOG3818|consen 322 SF 323 (525)
T ss_pred cc
Confidence 63
No 260
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.32 E-value=3.5e+02 Score=21.96 Aligned_cols=79 Identities=11% Similarity=0.041 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCC-CcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHH
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPV-DEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKM 175 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~ 175 (247)
..-++++++|+.++++++++|++... ...+...+...+....- ..-...+.--+..+.+.+.|+++|+.+|-+-.+.
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gv--dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPt 157 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGV--DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPT 157 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCC--CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34578888898888989999998532 22222222211100000 0001111222555667778889998888776554
Q ss_pred Hh
Q 025869 176 QE 177 (247)
Q Consensus 176 ~~ 177 (247)
..
T Consensus 158 t~ 159 (265)
T COG0159 158 TP 159 (265)
T ss_pred CC
Confidence 43
No 261
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.88 E-value=3e+02 Score=19.51 Aligned_cols=65 Identities=12% Similarity=-0.046 Sum_probs=40.1
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP- 110 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p- 110 (247)
.+++|++.|.-- +... ......+. ++|+|.++. ....+...+..+++.+++.++
T Consensus 29 ~GfeVi~lg~~~-s~e~---~v~aa~e~----~adii~iSs-----------------l~~~~~~~~~~~~~~L~~~g~~ 83 (132)
T TIGR00640 29 LGFDVDVGPLFQ-TPEE---IARQAVEA----DVHVVGVSS-----------------LAGGHLTLVPALRKELDKLGRP 83 (132)
T ss_pred CCcEEEECCCCC-CHHH---HHHHHHHc----CCCEEEEcC-----------------chhhhHHHHHHHHHHHHhcCCC
Confidence 448888888762 3332 23333433 889988842 234557778999999999865
Q ss_pred CCeEEEEcCCC
Q 025869 111 IMLVVLITPPP 121 (247)
Q Consensus 111 ~~~ivl~~~~p 121 (247)
..++++-+.+|
T Consensus 84 ~i~vivGG~~~ 94 (132)
T TIGR00640 84 DILVVVGGVIP 94 (132)
T ss_pred CCEEEEeCCCC
Confidence 44444444333
No 262
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=21.69 E-value=1.4e+02 Score=17.58 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHhc
Q 025869 195 EGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 195 ~G~~~iA~~l~~~l~~~ 211 (247)
-||+.|-+++.+.+.++
T Consensus 23 GGyk~IRnY~r~Kid~a 39 (59)
T PF07125_consen 23 GGYKVIRNYFRRKIDDA 39 (59)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 47888888888888776
No 263
>PRK08760 replicative DNA helicase; Provisional
Probab=21.65 E-value=3.3e+02 Score=24.24 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHhcCCCeeechHHH
Q 025869 149 MTGVYARQCIETAKDLGVPFIDLWSKM 175 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~vD~~~~~ 175 (247)
.+....+.++.+|+++++++|=+...-
T Consensus 363 ei~~Isr~LK~lAkel~ipVi~lsQLn 389 (476)
T PRK08760 363 EISEISRSLKGLAKELNVPVIALSQLN 389 (476)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEeeccC
Confidence 456778889999999999998776543
No 264
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=21.51 E-value=2.2e+02 Score=25.06 Aligned_cols=71 Identities=11% Similarity=-0.075 Sum_probs=42.9
Q ss_pred HHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHH
Q 025869 23 GAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMV 102 (247)
Q Consensus 23 ~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i 102 (247)
-..++..+. +..+++......+.....+ .. .+||+|.|..-+-. .....++.
T Consensus 37 L~ylAa~l~-~~~iiD~~~~~~~~~~~~~----~~-----~~~Dlv~is~~t~~------------------~~~~~~ia 88 (472)
T TIGR03471 37 LAQPAAMIP-GSRLVDAPPHGVTIDDTLA----IA-----KDYDLVVLHTSTPS------------------FPSDVKTA 88 (472)
T ss_pred HHHHHHhcc-CceEEeCCcccCCHHHHHH----Hh-----cCCCEEEEECCCcc------------------hHHHHHHH
Confidence 345555554 3567776655555543222 11 26899998532111 22455678
Q ss_pred HHHHHhCCCCeEEEEcCCC
Q 025869 103 QHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 103 ~~~~~~~p~~~ivl~~~~p 121 (247)
+.+|+.+|+++||+.++.+
T Consensus 89 ~~iK~~~p~~~vv~GG~h~ 107 (472)
T TIGR03471 89 EALKEQNPATKIGFVGAHV 107 (472)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 9999999999888887754
No 265
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=21.42 E-value=3.1e+02 Score=19.54 Aligned_cols=47 Identities=13% Similarity=-0.098 Sum_probs=19.7
Q ss_pred CcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 65 PVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 65 ~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.|+|||..+..+... ........+++..++..++. +..+|++.+...
T Consensus 2 aD~ivVlG~~~~~~~---------~~~~~~~~R~~~a~~L~~~g-~~~~il~SGg~~ 48 (155)
T PF02698_consen 2 ADAIVVLGSALDPDG---------QLSPESRERLDEAARLYKAG-YAPRILFSGGYG 48 (155)
T ss_dssp -SEEEEES--------------------S-HHHHHHHHHHHH-H-HT--EEEE--SS
T ss_pred CcEEEECCcCccccc---------cccHhHHHHHHHHHHHHhcC-CCCeEEECCCCC
Confidence 577777652332221 12334566788888888864 355577776543
No 266
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.41 E-value=3.7e+02 Score=22.16 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=30.7
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEe-cCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLL-RGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAND 76 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n-~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND 76 (247)
++|.++.++.. +|. .+...+.+.+.. ++++.. ..+.. ....+...+.++... ++|.|++.....+
T Consensus 145 ~~va~l~~~~~-~g~---~~~~~~~~~~~~~G~~vv~~~~~~~-~~~d~~~~v~~l~~~----~~d~v~~~~~~~~ 211 (344)
T cd06345 145 KTAAIVAEDAA-WGK---GIDAGIKALLPEAGLEVVSVERFSP-DTTDFTPILQQIKAA----DPDVIIAGFSGNV 211 (344)
T ss_pred ceEEEEecCch-hhh---HHHHHHHHHHHHcCCeEEEEEecCC-CCCchHHHHHHHHhc----CCCEEEEeecCch
Confidence 36777777654 321 333444444422 244432 22221 122233445555544 7898888654433
No 267
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=21.35 E-value=1.6e+02 Score=20.98 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=31.2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.+++.+||.+..|--+.. .......+++.+.+.+..|+.+|+++.=
T Consensus 50 ~~i~~iVvGlP~~~~G~~-----------~~~~~~v~~f~~~L~~~~~~ipV~~~DE 95 (135)
T PF03652_consen 50 YQIDGIVVGLPLNMDGSE-----------SEQARRVRKFAEELKKRFPGIPVILVDE 95 (135)
T ss_dssp CCECEEEEEEEBBCTSSC------------CCHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred hCCCEEEEeCCcccCCCc-----------cHHHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 378999999887765532 2224556777777777767888888854
No 268
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.31 E-value=3.3e+02 Score=19.79 Aligned_cols=70 Identities=10% Similarity=-0.045 Sum_probs=43.1
Q ss_pred HHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHH
Q 025869 24 AALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMV 102 (247)
Q Consensus 24 ~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i 102 (247)
..+.+.|. .+++++|.|.--.... ......+. +.++|.++. -...+...+..++
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp~e----~v~aA~~~----dv~vIgvSs-----------------l~g~h~~l~~~lv 84 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTPEE----AVRAAVEE----DVDVIGVSS-----------------LDGGHLTLVPGLV 84 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCHHH----HHHHHHhc----CCCEEEEEe-----------------ccchHHHHHHHHH
Confidence 34444442 3489999888743322 23333333 788888863 1233466788999
Q ss_pred HHHHHhCCCCeEEEEc
Q 025869 103 QHLKRLSPIMLVVLIT 118 (247)
Q Consensus 103 ~~~~~~~p~~~ivl~~ 118 (247)
+.+|+.+.+..+++++
T Consensus 85 e~lre~G~~~i~v~~G 100 (143)
T COG2185 85 EALREAGVEDILVVVG 100 (143)
T ss_pred HHHHHhCCcceEEeec
Confidence 9999998766553443
No 269
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=21.24 E-value=1.7e+02 Score=25.75 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=26.4
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 025869 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (247)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~ 122 (247)
.+......-|++++..+++.+|..+|++-.=...
T Consensus 195 ~sa~g~~~fL~~~l~~lr~~~~~~~ILvR~DSgF 228 (448)
T PF13701_consen 195 HSAKGAAEFLKRVLRRLRQRWPDTRILVRGDSGF 228 (448)
T ss_pred ChHHHHHHHHHHHHHHHhhhCccceEEEEecCcc
Confidence 3456688899999999999999888877654433
No 270
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.03 E-value=5.2e+02 Score=21.90 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=22.4
Q ss_pred cEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 66 VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 66 d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
-.|+++.|.|-.+= . ..+.++...+++. +-++++...
T Consensus 139 p~Vil~vGVNG~GK------------T---TTIaKLA~~l~~~--g~~VllaA~ 175 (340)
T COG0552 139 PFVILFVGVNGVGK------------T---TTIAKLAKYLKQQ--GKSVLLAAG 175 (340)
T ss_pred cEEEEEEecCCCch------------H---hHHHHHHHHHHHC--CCeEEEEec
Confidence 46777899998862 1 1344555666666 445665544
No 271
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.99 E-value=3.2e+02 Score=19.42 Aligned_cols=67 Identities=9% Similarity=-0.112 Sum_probs=40.8
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP- 110 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p- 110 (247)
.++++++.|..- +... ..+...+. ++|+|.++. +. .+....+.++++.+++.+.
T Consensus 26 ~GfeVidLG~~v-~~e~---~v~aa~~~----~adiVglS~----L~-------------t~~~~~~~~~~~~l~~~gl~ 80 (128)
T cd02072 26 AGFNVVNLGVLS-PQEE---FIDAAIET----DADAILVSS----LY-------------GHGEIDCKGLREKCDEAGLK 80 (128)
T ss_pred CCCEEEECCCCC-CHHH---HHHHHHHc----CCCEEEEec----cc-------------cCCHHHHHHHHHHHHHCCCC
Confidence 448999999874 2232 23333333 889988852 11 1123467788888888865
Q ss_pred CCeEEEEcCCCCC
Q 025869 111 IMLVVLITPPPVD 123 (247)
Q Consensus 111 ~~~ivl~~~~p~~ 123 (247)
+.++++-+.+++.
T Consensus 81 ~v~vivGG~~~i~ 93 (128)
T cd02072 81 DILLYVGGNLVVG 93 (128)
T ss_pred CCeEEEECCCCCC
Confidence 6666666665443
No 272
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=20.98 E-value=1.8e+02 Score=21.91 Aligned_cols=38 Identities=29% Similarity=0.291 Sum_probs=25.8
Q ss_pred CeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhc
Q 025869 112 MLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQET 178 (247)
Q Consensus 112 ~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~ 178 (247)
..|++++++-.+++... +.+|+..+.+|+|....+...
T Consensus 3 ~~IvLiG~mGaGKSTIG-----------------------------r~LAk~L~~~F~D~D~~Ie~~ 40 (172)
T COG0703 3 MNIVLIGFMGAGKSTIG-----------------------------RALAKALNLPFIDTDQEIEKR 40 (172)
T ss_pred ccEEEEcCCCCCHhHHH-----------------------------HHHHHHcCCCcccchHHHHHH
Confidence 35899998776665322 234677788888887776654
No 273
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.96 E-value=2.3e+02 Score=23.08 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCeEEEE
Q 025869 92 EEYGDNLKIMVQHLKRLSPIMLVVLI 117 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~~~p~~~ivl~ 117 (247)
+.+.+.++++-+.+++..|++ ||++
T Consensus 31 ~~~~~a~~~i~~~v~~~~PDv-iVvi 55 (279)
T PRK13365 31 KPLFDGYEPVAAWLAEQKADV-LVFF 55 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCE-EEEE
Confidence 678899999999999998886 4444
No 274
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=20.96 E-value=1e+02 Score=19.10 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCeeechHHHHhccc-----ccccccccc-------cCCChhHHHHHHHHHHHHHHh
Q 025869 157 CIETAKDLGVPFIDLWSKMQETEG-----WQKKFLSDG-------LHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 157 ~~~~a~~~~v~~vD~~~~~~~~~~-----~~~~~~~Dg-------~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
++-+|.+.|-..+|++..++.... +..-+..|+ -|.|-.+....+..+...+++
T Consensus 6 lklvaaqvgsqwid~y~sla~aterevaafsngytadherayaalqhwtird~~~~~~~~~~~~rq 71 (84)
T cd08778 6 LKLVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLISALRQ 71 (84)
T ss_pred HHHHHHHHhhHHHHHHHHHhhhhHHHHHHHcCCCcccHHHHHHHHHhhhccChHHHHHHHHHHHHH
Confidence 344455555566666665554211 111223333 477777776666666555544
No 275
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=20.93 E-value=1.7e+02 Score=25.93 Aligned_cols=73 Identities=7% Similarity=0.043 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeee
Q 025869 91 VEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFID 170 (247)
Q Consensus 91 ~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD 170 (247)
.++-.+.++++|+.++++ +++.++...- . +.+ .++ . ...+. ...+....|.+-.+.+.++++ . |+
T Consensus 88 N~~gl~~Y~~lid~l~~~--GI~P~VTL~H-~-dlP--~~L---~--~~GGW--~n~~~v~~F~~YA~~~f~~fg-d-Vk 152 (467)
T TIGR01233 88 NEKGVEFYHKLFAECHKR--HVEPFVTLHH-F-DTP--EAL---H--SNGDF--LNRENIEHFIDYAAFCFEEFP-E-VN 152 (467)
T ss_pred CHHHHHHHHHHHHHHHHc--CCEEEEeccC-C-CCc--HHH---H--HcCCC--CCHHHHHHHHHHHHHHHHHhC-C-CC
Confidence 455688999999999999 6666665441 1 111 111 0 00111 122344556555566677777 5 66
Q ss_pred chHHHHhc
Q 025869 171 LWSKMQET 178 (247)
Q Consensus 171 ~~~~~~~~ 178 (247)
.+-.+++.
T Consensus 153 ~WiT~NEP 160 (467)
T TIGR01233 153 YWTTFNEI 160 (467)
T ss_pred EEEEecch
Confidence 66666654
No 276
>PRK04940 hypothetical protein; Provisional
Probab=20.85 E-value=1e+02 Score=23.32 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=38.5
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCC---------CCch---HHHHHHhhhhcCCCCCCCCcEEEEE
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYG---------GYNT---RWALFLLHHIFPLDNSNPPVATTIF 71 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~---------G~~t---~~~~~~l~~~~~~~~~~~~d~vii~ 71 (247)
.++++|.|+-- -|...|+..++-+.-++|=++. |... ....+.+..+. ..+|+.+.+.
T Consensus 61 ~~~liGSSLGG------yyA~~La~~~g~~aVLiNPAv~P~~~L~~~ig~~~~y~~~~~~h~~eL~----~~~p~r~~vl 130 (180)
T PRK04940 61 RPLICGVGLGG------YWAERIGFLCGIRQVIFNPNLFPEENMEGKIDRPEEYADIATKCVTNFR----EKNRDRCLVI 130 (180)
T ss_pred CcEEEEeChHH------HHHHHHHHHHCCCEEEECCCCChHHHHHHHhCCCcchhhhhHHHHHHhh----hcCcccEEEE
Confidence 58899999972 5889999998755445553322 2111 11112222222 3478877777
Q ss_pred ccCcccc
Q 025869 72 FGANDAA 78 (247)
Q Consensus 72 ~G~ND~~ 78 (247)
+.+-|-.
T Consensus 131 lq~gDEv 137 (180)
T PRK04940 131 LSRNDEV 137 (180)
T ss_pred EeCCCcc
Confidence 7777764
No 277
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=20.78 E-value=3.6e+02 Score=19.93 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=23.7
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
..|.+++.+-.+|.. . .+++..+++.++...++.+++++..
T Consensus 73 ~~d~iilv~d~~~~~--------------s-~~~~~~~~~~i~~~~~~~piilv~n 113 (193)
T cd04118 73 GAKAAIVCYDLTDSS--------------S-FERAKFWVKELQNLEEHCKIYLCGT 113 (193)
T ss_pred CCCEEEEEEECCCHH--------------H-HHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 578888887555432 2 2234556666666555566666654
No 278
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=20.51 E-value=1.5e+02 Score=26.96 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=30.4
Q ss_pred EEEccCcccccc----C----CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 69 TIFFGANDAALF----G----RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 69 ii~~G~ND~~~~----~----~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
+|++|+||+..+ . ..+......-..+...++.+++.++++ +..+-+++.
T Consensus 447 f~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~--g~~v~vCGe 503 (565)
T TIGR01417 447 FFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAE--GIWVGMCGE 503 (565)
T ss_pred EEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHc--CCeEEEeCC
Confidence 677899998652 1 011111223346777888999999888 555665554
No 279
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=20.45 E-value=3.5e+02 Score=24.16 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
-.+.|.++++.+++. +++.|++.+
T Consensus 405 S~~~L~~Li~~IK~~--~V~~IF~Ep 428 (479)
T TIGR03772 405 SLADRRRLTRTIENL--KVPAVFLEP 428 (479)
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeC
Confidence 366799999999999 777888876
No 280
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=20.43 E-value=2.8e+02 Score=18.54 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeec
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDL 171 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~ 171 (247)
...+.++.++.. .+++|++..- . -....+.+...|++++++++..
T Consensus 20 G~~~v~kai~~g--kaklViiA~D----~------------------------~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 20 GSKRTIKAIKLG--KAKLVIVASN----C------------------------PKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred cHHHHHHHHHcC--CceEEEEeCC----C------------------------CHHHHHHHHHHHHHcCCCEEEE
Confidence 455667777765 6777777651 0 0133355567789999997664
No 281
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=3.5e+02 Score=24.78 Aligned_cols=128 Identities=10% Similarity=0.099 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHH---HhcCCCeeec
Q 025869 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETA---KDLGVPFIDL 171 (247)
Q Consensus 95 ~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~v~~vD~ 171 (247)
..+++.+++.++++.| .||++.-...-...+.+.. .....+..||.+.++- +..||.+|--
T Consensus 382 ArRVRdLF~aAk~~AP--cIIFIDEiDavG~kR~~~~--------------~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 382 ARRVRDLFAAAKARAP--CIIFIDEIDAVGGKRNPSD--------------QHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred HHHHHHHHHHHHhcCC--eEEEEechhhhcccCCccH--------------HHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 4578999999999954 4788765432111111110 1133446677666653 3346666532
Q ss_pred h-------HHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc-CCCCCCCCCCCCCCCCCCCCCccchHHHH
Q 025869 172 W-------SKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA-GLSSEEMPYDFPHHSQIDAKNPEKTFQQQ 240 (247)
Q Consensus 172 ~-------~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~-~~~~~~~p~~~p~~~~~~~~~~~~~~~~~ 240 (247)
. +++.-.+.+...... --|.-+|...|-+.....+... ...+.-+..-.|.|+-.+-+|=+++...+
T Consensus 446 TNfpe~LD~AL~RPGRFD~~v~V--p~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlk 520 (752)
T KOG0734|consen 446 TNFPEALDKALTRPGRFDRHVTV--PLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALK 520 (752)
T ss_pred cCChhhhhHHhcCCCccceeEec--CCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHH
Confidence 2 222222211111111 1367789887777666655554 66677777888888888777766665544
No 282
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.21 E-value=4.1e+02 Score=20.38 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 025869 96 DNLKIMVQHLKRLSPIMLVVLITPPPV 122 (247)
Q Consensus 96 ~~l~~~i~~~~~~~p~~~ivl~~~~p~ 122 (247)
+++.++++.++++ ++++|.++..+-
T Consensus 123 ~~v~~a~~~Ak~~--G~~vI~IT~~~~ 147 (196)
T PRK10886 123 RDIVKAVEAAVTR--DMTIVALTGYDG 147 (196)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 3688899999999 888888887553
Done!