Query 025869
Match_columns 247
No_of_seqs 139 out of 1398
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 19:25:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mil_A Isoamyl acetate-hydroly 100.0 4.5E-34 1.5E-38 225.6 18.8 221 2-234 3-235 (240)
2 4hf7_A Putative acylhydrolase; 100.0 1.6E-32 5.6E-37 212.8 15.7 180 3-211 27-208 (209)
3 4h08_A Putative hydrolase; GDS 100.0 2.1E-31 7.1E-36 205.1 16.8 177 2-211 20-197 (200)
4 2q0q_A ARYL esterase; SGNH hyd 100.0 9.3E-31 3.2E-35 203.5 14.0 184 1-210 1-214 (216)
5 1yzf_A Lipase/acylhydrolase; s 100.0 4.3E-30 1.5E-34 196.3 16.9 181 2-211 1-189 (195)
6 3dci_A Arylesterase; SGNH_hydr 100.0 1.9E-30 6.5E-35 204.3 13.5 182 2-211 23-229 (232)
7 3dc7_A Putative uncharacterize 100.0 6E-30 2E-34 201.3 16.2 194 3-212 22-224 (232)
8 3hp4_A GDSL-esterase; psychrot 100.0 2E-29 6.9E-34 191.4 14.8 174 1-211 1-181 (185)
9 3rjt_A Lipolytic protein G-D-S 100.0 3.5E-29 1.2E-33 194.2 15.8 187 2-209 8-214 (216)
10 3p94_A GDSL-like lipase; serin 100.0 1.7E-29 5.8E-34 194.6 13.8 178 4-211 24-202 (204)
11 1ivn_A Thioesterase I; hydrola 100.0 1.7E-28 5.8E-33 187.2 18.2 173 3-212 2-178 (190)
12 2hsj_A Putative platelet activ 100.0 1E-28 3.4E-33 191.8 15.8 178 2-208 34-213 (214)
13 1k7c_A Rhamnogalacturonan acet 100.0 4E-29 1.4E-33 196.8 12.6 186 4-211 2-215 (233)
14 3bzw_A Putative lipase; protei 100.0 1.8E-28 6.3E-33 197.6 15.0 200 3-211 27-262 (274)
15 1vjg_A Putative lipase from th 100.0 1.7E-28 5.7E-33 191.3 13.9 181 3-206 21-209 (218)
16 1es9_A PAF-AH, platelet-activa 100.0 4.3E-28 1.5E-32 190.8 16.3 175 2-211 38-215 (232)
17 1fxw_F Alpha2, platelet-activa 100.0 3.7E-28 1.3E-32 190.8 13.8 175 2-211 39-216 (229)
18 3skv_A SSFX3; jelly roll, GDSL 99.9 3.4E-27 1.2E-31 197.3 15.0 189 2-215 185-382 (385)
19 2o14_A Hypothetical protein YX 99.9 8E-26 2.7E-30 189.4 15.9 184 3-211 163-362 (375)
20 2vpt_A Lipolytic enzyme; ester 99.9 4.3E-27 1.5E-31 183.0 7.1 172 3-211 6-198 (215)
21 1esc_A Esterase; 2.10A {Strept 99.9 1.2E-24 4.2E-29 177.9 14.8 206 3-211 6-303 (306)
22 2wao_A Endoglucanase E; plant 99.9 2.2E-23 7.5E-28 172.9 12.4 175 2-211 122-330 (341)
23 2waa_A Acetyl esterase, xylan 99.9 1.5E-22 5E-27 168.2 13.6 167 3-211 133-336 (347)
24 2w9x_A AXE2A, CJCE2B, putative 99.9 1.3E-21 4.5E-26 163.6 13.5 175 2-211 142-356 (366)
25 3kvn_X Esterase ESTA; beta bar 99.6 2.8E-14 9.5E-19 127.2 14.1 194 3-209 16-317 (632)
26 4i8i_A Hypothetical protein; 5 99.3 1.4E-10 4.8E-15 92.1 15.1 187 4-211 12-226 (271)
27 1zmb_A Acetylxylan esterase re 98.1 9.1E-05 3.1E-09 59.3 13.0 158 21-211 59-227 (290)
28 3bma_A D-alanyl-lipoteichoic a 97.2 0.0019 6.6E-08 53.7 9.3 96 95-211 275-371 (407)
29 2apj_A Putative esterase; AT4G 97.2 0.0093 3.2E-07 46.8 12.6 143 21-210 97-257 (260)
30 3nvb_A Uncharacterized protein 96.5 0.014 4.7E-07 48.5 9.0 183 4-211 24-217 (387)
31 3pt5_A NANS (YJHS), A 9-O-acet 93.4 0.16 5.6E-06 40.8 6.1 47 65-120 183-239 (337)
32 3kcn_A Adenylate cyclase homol 87.0 4.3 0.00015 27.9 8.3 81 2-119 4-84 (151)
33 3cu5_A Two component transcrip 83.9 7.9 0.00027 26.2 9.8 84 1-121 1-87 (141)
34 2qxy_A Response regulator; reg 82.4 6.3 0.00022 26.5 7.4 80 2-120 4-84 (142)
35 3nhm_A Response regulator; pro 80.7 8.1 0.00028 25.5 7.4 82 2-121 4-87 (133)
36 4e7p_A Response regulator; DNA 80.7 11 0.00038 25.6 8.6 84 3-121 21-104 (150)
37 3hzh_A Chemotaxis response reg 79.7 8.8 0.0003 26.5 7.5 84 2-120 36-120 (157)
38 3cfy_A Putative LUXO repressor 79.6 4.9 0.00017 27.1 5.9 82 1-120 3-85 (137)
39 3lua_A Response regulator rece 77.8 12 0.0004 25.1 7.5 82 2-120 4-90 (140)
40 3kto_A Response regulator rece 76.5 14 0.00048 24.5 7.6 81 3-121 7-90 (136)
41 3hv2_A Response regulator/HD d 76.3 10 0.00035 25.9 6.9 82 2-121 14-96 (153)
42 1srr_A SPO0F, sporulation resp 75.4 6.9 0.00023 25.6 5.6 82 1-120 2-84 (124)
43 3eul_A Possible nitrate/nitrit 75.3 17 0.00056 24.7 8.9 39 64-121 61-99 (152)
44 3eqz_A Response regulator; str 74.8 15 0.00052 24.1 8.9 80 2-119 3-82 (135)
45 3eod_A Protein HNR; response r 73.8 9.8 0.00033 25.0 6.1 81 3-121 8-89 (130)
46 3hdg_A Uncharacterized protein 72.9 13 0.00046 24.6 6.7 81 3-121 8-89 (137)
47 1mvo_A PHOP response regulator 72.5 8.4 0.00029 25.6 5.5 83 1-121 2-85 (136)
48 3jte_A Response regulator rece 72.1 19 0.00065 24.0 8.7 84 2-121 3-87 (143)
49 1qkk_A DCTD, C4-dicarboxylate 72.0 14 0.00048 25.2 6.8 80 2-119 3-83 (155)
50 1tmy_A CHEY protein, TMY; chem 71.9 17 0.00058 23.3 8.5 83 1-120 1-84 (120)
51 3kbq_A Protein TA0487; structu 71.7 4.5 0.00015 29.3 4.0 67 2-74 5-72 (172)
52 2rjn_A Response regulator rece 70.5 19 0.00066 24.4 7.2 80 3-120 8-88 (154)
53 3pzy_A MOG; ssgcid, seattle st 69.7 5.4 0.00018 28.6 4.0 65 4-74 11-76 (164)
54 2qr3_A Two-component system re 69.5 12 0.00041 24.9 5.8 84 3-119 4-88 (140)
55 3hdv_A Response regulator; PSI 68.9 17 0.00059 24.0 6.5 82 2-120 7-90 (136)
56 3gl9_A Response regulator; bet 68.8 15 0.00051 23.9 6.1 82 1-120 1-85 (122)
57 3snk_A Response regulator CHEY 68.7 14 0.00046 24.6 5.9 39 63-120 58-96 (135)
58 3i42_A Response regulator rece 68.7 12 0.00042 24.4 5.6 81 3-121 4-87 (127)
59 4dad_A Putative pilus assembly 68.2 24 0.00082 23.6 7.5 38 64-120 67-104 (146)
60 2jba_A Phosphate regulon trans 68.0 13 0.00044 24.2 5.6 81 1-119 1-84 (127)
61 3kht_A Response regulator; PSI 67.7 16 0.00056 24.4 6.2 38 64-120 51-90 (144)
62 3cg4_A Response regulator rece 67.6 20 0.00067 23.9 6.6 82 2-121 7-91 (142)
63 2qsj_A DNA-binding response re 67.3 13 0.00046 25.3 5.8 22 100-121 67-88 (154)
64 2zay_A Response regulator rece 66.6 16 0.00056 24.5 6.1 82 2-120 8-91 (147)
65 1jlj_A Gephyrin; globular alph 66.6 9.1 0.00031 28.1 4.9 67 4-74 18-88 (189)
66 3rqi_A Response regulator prot 66.3 23 0.00078 25.2 7.0 82 2-121 7-89 (184)
67 1yio_A Response regulatory pro 66.2 34 0.0012 24.6 8.8 82 2-121 4-86 (208)
68 3n53_A Response regulator rece 65.3 14 0.00048 24.6 5.5 81 3-121 4-86 (140)
69 3cz5_A Two-component response 63.8 31 0.0011 23.3 8.3 81 3-120 6-88 (153)
70 1dbw_A Transcriptional regulat 63.7 27 0.00092 22.6 6.7 81 2-120 3-84 (126)
71 2g2c_A Putative molybdenum cof 63.6 8 0.00027 27.7 4.0 66 4-74 9-79 (167)
72 1y5e_A Molybdenum cofactor bio 63.1 22 0.00076 25.3 6.3 65 4-74 17-82 (169)
73 4dkx_A RAS-related protein RAB 62.7 20 0.00068 26.7 6.2 10 4-13 15-24 (216)
74 3a10_A Response regulator; pho 62.4 21 0.0007 22.7 5.7 21 100-120 62-82 (116)
75 2gkg_A Response regulator homo 61.8 14 0.00048 23.9 4.8 79 1-117 4-86 (127)
76 2jk1_A HUPR, hydrogenase trans 61.1 33 0.0011 22.7 7.6 82 2-121 1-82 (139)
77 3pzs_A PM kinase, pyridoxamine 61.1 46 0.0016 25.9 8.4 27 92-119 89-115 (289)
78 3grc_A Sensor protein, kinase; 61.0 20 0.00069 23.8 5.6 79 3-119 7-88 (140)
79 3f6p_A Transcriptional regulat 60.9 30 0.001 22.2 6.6 80 1-119 1-81 (120)
80 3e59_A Pyoverdine biosynthesis 60.7 27 0.00091 28.1 6.7 67 87-169 82-149 (330)
81 3rfq_A Pterin-4-alpha-carbinol 60.3 11 0.00038 27.6 4.2 65 4-74 34-99 (185)
82 2b4a_A BH3024; flavodoxin-like 60.2 24 0.00082 23.3 5.9 38 64-120 60-98 (138)
83 1dz3_A Stage 0 sporulation pro 59.2 34 0.0012 22.2 9.3 82 1-119 1-85 (130)
84 3gt7_A Sensor protein; structu 58.5 40 0.0014 22.8 7.1 81 2-120 7-90 (154)
85 3b2n_A Uncharacterized protein 57.6 37 0.0013 22.2 8.6 22 100-121 66-87 (133)
86 1kgs_A DRRD, DNA binding respo 56.8 26 0.0009 25.6 6.1 82 1-120 1-83 (225)
87 3cnb_A DNA-binding response re 56.3 40 0.0014 22.2 8.1 82 2-120 8-93 (143)
88 2pbq_A Molybdenum cofactor bio 56.0 15 0.0005 26.6 4.3 66 4-74 9-78 (178)
89 2qv0_A Protein MRKE; structura 56.0 29 0.00099 23.0 5.8 21 100-120 72-92 (143)
90 1y81_A Conserved hypothetical 55.8 16 0.00054 25.2 4.3 20 155-174 106-125 (138)
91 3crn_A Response regulator rece 55.7 40 0.0014 22.0 7.6 81 2-120 3-84 (132)
92 3ist_A Glutamate racemase; str 55.1 71 0.0024 24.7 9.1 69 33-119 7-75 (269)
93 2gzm_A Glutamate racemase; enz 54.8 71 0.0024 24.6 9.8 69 33-119 5-73 (267)
94 2yxb_A Coenzyme B12-dependent 54.6 53 0.0018 23.1 9.2 65 32-121 45-110 (161)
95 2is8_A Molybdopterin biosynthe 54.6 15 0.00052 26.1 4.1 68 3-74 4-72 (164)
96 1mld_A Malate dehydrogenase; o 52.9 35 0.0012 27.1 6.4 52 64-120 68-119 (314)
97 3heb_A Response regulator rece 52.6 44 0.0015 22.4 6.3 39 63-120 58-98 (152)
98 1uuy_A CNX1, molybdopterin bio 49.9 20 0.00069 25.5 4.2 67 4-74 9-81 (167)
99 2e85_A Hydrogenase 3 maturatio 49.9 45 0.0016 23.5 6.0 42 1-46 4-49 (159)
100 3t6k_A Response regulator rece 49.5 41 0.0014 22.2 5.6 79 3-119 5-86 (136)
101 3pqe_A L-LDH, L-lactate dehydr 49.3 34 0.0012 27.4 5.8 51 62-120 71-124 (326)
102 1s8n_A Putative antiterminator 48.5 71 0.0024 22.8 7.5 81 1-119 12-93 (205)
103 3f6c_A Positive transcription 48.2 54 0.0018 21.3 9.1 81 4-121 3-84 (134)
104 3ldh_A Lactate dehydrogenase; 47.9 49 0.0017 26.6 6.5 51 62-120 87-140 (330)
105 1zuw_A Glutamate racemase 1; ( 47.0 97 0.0033 23.9 9.7 68 34-119 6-74 (272)
106 1ez4_A Lactate dehydrogenase; 46.9 40 0.0014 26.9 5.9 53 63-120 71-123 (318)
107 3men_A Acetylpolyamine aminohy 46.5 23 0.00079 28.9 4.4 75 36-118 262-337 (362)
108 3gvi_A Malate dehydrogenase; N 46.1 31 0.0011 27.6 5.1 51 62-120 73-126 (324)
109 1oju_A MDH, malate dehydrogena 45.5 40 0.0014 26.6 5.6 49 63-120 68-120 (294)
110 1mkz_A Molybdenum cofactor bio 45.4 26 0.00088 25.1 4.1 65 4-74 14-79 (172)
111 2jfz_A Glutamate racemase; cel 45.3 99 0.0034 23.5 9.9 68 34-119 3-70 (255)
112 3jsz_A LGT1, putative uncharac 44.8 64 0.0022 26.4 6.5 88 97-211 151-238 (525)
113 3p7m_A Malate dehydrogenase; p 44.6 45 0.0015 26.6 5.8 49 63-120 72-124 (321)
114 3nep_X Malate dehydrogenase; h 44.2 43 0.0015 26.7 5.6 51 62-120 67-120 (314)
115 3klo_A Transcriptional regulat 44.1 90 0.0031 22.7 7.7 22 100-121 71-93 (225)
116 3iwt_A 178AA long hypothetical 43.8 31 0.001 24.7 4.4 68 4-74 19-91 (178)
117 2pjk_A 178AA long hypothetical 43.0 49 0.0017 23.8 5.4 68 4-74 19-91 (178)
118 3r0j_A Possible two component 42.9 46 0.0016 24.9 5.5 81 3-121 24-105 (250)
119 2gwr_A DNA-binding response re 42.8 94 0.0032 22.8 7.3 82 1-121 4-86 (238)
120 3hhp_A Malate dehydrogenase; M 42.5 53 0.0018 26.1 5.9 48 64-120 69-120 (312)
121 3o63_A Probable thiamine-phosp 42.3 30 0.001 26.4 4.3 40 150-195 81-121 (243)
122 1dc7_A NTRC, nitrogen regulati 42.2 43 0.0015 21.3 4.7 21 100-120 64-84 (124)
123 4aj2_A L-lactate dehydrogenase 42.0 49 0.0017 26.6 5.7 50 63-120 86-138 (331)
124 2oqr_A Sensory transduction pr 42.0 44 0.0015 24.4 5.2 81 1-120 3-84 (230)
125 4a1f_A DNAB helicase, replicat 41.8 47 0.0016 26.8 5.6 66 97-176 142-207 (338)
126 3ilh_A Two component response 41.6 72 0.0025 20.9 9.8 88 3-120 10-101 (146)
127 1zgz_A Torcad operon transcrip 41.4 66 0.0022 20.3 8.2 81 1-120 1-82 (122)
128 3lte_A Response regulator; str 41.1 70 0.0024 20.6 6.2 79 3-119 7-88 (132)
129 3tl2_A Malate dehydrogenase; c 40.7 39 0.0013 26.9 4.9 51 62-120 76-129 (315)
130 1k66_A Phytochrome response re 40.3 58 0.002 21.5 5.3 21 100-120 79-101 (149)
131 1a2o_A CHEB methylesterase; ba 40.0 1.4E+02 0.0049 23.9 9.3 82 1-120 1-85 (349)
132 1di6_A MOGA, molybdenum cofact 38.8 46 0.0016 24.4 4.7 67 4-74 7-76 (195)
133 1iuk_A Hypothetical protein TT 38.2 64 0.0022 22.0 5.1 61 4-72 15-78 (140)
134 3h5i_A Response regulator/sens 38.1 83 0.0029 20.6 6.5 82 3-121 6-88 (140)
135 1p2f_A Response regulator; DRR 38.1 1.1E+02 0.0038 22.0 9.4 81 1-121 1-81 (220)
136 3c3w_A Two component transcrip 37.9 1.2E+02 0.0039 22.2 7.5 22 100-121 64-85 (225)
137 2rdm_A Response regulator rece 37.9 69 0.0023 20.6 5.3 82 3-121 6-89 (132)
138 3d0o_A L-LDH 1, L-lactate dehy 37.7 45 0.0016 26.4 4.8 53 63-120 73-125 (317)
139 5mdh_A Malate dehydrogenase; o 37.4 1.1E+02 0.0036 24.6 7.0 53 63-120 78-131 (333)
140 2pln_A HP1043, response regula 37.3 52 0.0018 21.5 4.6 20 100-120 75-95 (137)
141 3ezx_A MMCP 1, monomethylamine 37.2 1.2E+02 0.0043 22.4 9.4 65 32-121 119-187 (215)
142 3q9b_A Acetylpolyamine amidohy 37.1 26 0.00089 28.4 3.3 73 37-117 245-318 (341)
143 1smk_A Malate dehydrogenase, g 36.8 87 0.003 24.9 6.4 53 64-122 76-128 (326)
144 2jfn_A Glutamate racemase; cel 36.4 1.5E+02 0.0051 23.0 8.3 70 33-119 23-92 (285)
145 2d4a_B Malate dehydrogenase; a 36.0 59 0.002 25.7 5.3 49 63-119 66-117 (308)
146 3t8y_A CHEB, chemotaxis respon 35.7 1E+02 0.0035 21.0 8.8 20 100-120 88-107 (164)
147 3bul_A Methionine synthase; tr 35.3 2.3E+02 0.0077 24.8 9.7 65 32-121 125-189 (579)
148 2xxj_A L-LDH, L-lactate dehydr 35.1 41 0.0014 26.7 4.2 49 63-120 66-118 (310)
149 2x0j_A Malate dehydrogenase; o 34.7 48 0.0016 26.1 4.4 49 63-120 68-120 (294)
150 2v5j_A 2,4-dihydroxyhept-2-ENE 34.2 71 0.0024 25.0 5.4 54 49-109 178-231 (287)
151 3vku_A L-LDH, L-lactate dehydr 33.7 41 0.0014 27.0 4.0 51 62-120 74-127 (326)
152 1a04_A Nitrate/nitrite respons 33.6 1.3E+02 0.0044 21.5 9.6 82 3-121 6-89 (215)
153 2kl8_A OR15; structural genomi 33.6 73 0.0025 18.6 5.7 63 89-168 10-72 (85)
154 1xhf_A DYE resistance, aerobic 32.8 94 0.0032 19.6 5.8 80 2-120 3-83 (123)
155 1y6j_A L-lactate dehydrogenase 32.5 93 0.0032 24.6 5.9 49 63-120 73-125 (318)
156 3q9s_A DNA-binding response re 32.1 1.6E+02 0.0053 21.9 7.7 21 100-121 98-118 (249)
157 1b8p_A Protein (malate dehydro 31.9 1.2E+02 0.004 24.2 6.4 49 63-120 82-135 (329)
158 1ldn_A L-lactate dehydrogenase 31.1 1.3E+02 0.0043 23.8 6.5 53 62-119 72-124 (316)
159 3fxt_A Nucleoside diphosphate- 31.0 68 0.0023 21.3 4.0 47 64-120 31-77 (113)
160 3zs7_A Pyridoxal kinase; trans 30.8 1E+02 0.0034 24.2 5.8 92 2-110 3-106 (300)
161 2zqz_A L-LDH, L-lactate dehydr 30.7 46 0.0016 26.6 3.8 49 63-120 75-127 (326)
162 3max_A HD2, histone deacetylas 30.6 1.3E+02 0.0045 24.5 6.5 50 62-119 245-294 (367)
163 1y80_A Predicted cobalamin bin 30.4 1.6E+02 0.0054 21.5 7.1 65 32-121 115-181 (210)
164 2d59_A Hypothetical protein PH 30.4 1.3E+02 0.0044 20.5 8.1 16 155-170 114-129 (144)
165 1ccw_A Protein (glutamate muta 30.1 1.3E+02 0.0044 20.3 6.4 64 32-120 30-94 (137)
166 1cfz_A Hydrogenase 2 maturatio 29.7 1.4E+02 0.005 20.8 11.8 41 1-45 1-47 (162)
167 2wnw_A Activated by transcript 29.6 2.5E+02 0.0085 23.5 14.2 149 51-214 70-231 (447)
168 2vws_A YFAU, 2-keto-3-deoxy su 29.5 68 0.0023 24.7 4.5 54 49-109 157-210 (267)
169 2qzj_A Two-component response 29.2 99 0.0034 20.2 4.9 80 2-120 4-84 (136)
170 2vjv_A Transposase ORFA; DNA-b 29.2 36 0.0012 23.9 2.7 24 148-171 39-62 (159)
171 4a69_A Histone deacetylase 3,; 28.9 1.4E+02 0.0048 24.4 6.4 76 36-119 218-295 (376)
172 2nt0_A Glucosylceramidase; cer 28.5 2.7E+02 0.0093 23.6 14.0 155 51-213 103-273 (497)
173 2jfq_A Glutamate racemase; cel 28.4 2.1E+02 0.0071 22.2 8.9 69 33-119 24-92 (286)
174 3fi9_A Malate dehydrogenase; s 28.1 66 0.0022 26.0 4.3 49 64-120 76-128 (343)
175 2i2x_B MTAC, methyltransferase 27.9 1.3E+02 0.0045 22.9 5.9 65 32-121 150-214 (258)
176 3luf_A Two-component system re 27.7 1.3E+02 0.0045 22.6 5.9 12 2-13 4-15 (259)
177 3u31_A SIR2A, transcriptional 27.7 58 0.002 25.6 3.8 64 1-75 191-254 (290)
178 1k68_A Phytochrome response re 27.5 1.2E+02 0.0043 19.3 8.6 39 63-120 54-94 (140)
179 1o6z_A MDH, malate dehydrogena 27.2 78 0.0027 24.8 4.6 49 62-119 68-120 (303)
180 1p6q_A CHEY2; chemotaxis, sign 26.6 1.3E+02 0.0043 19.1 6.1 21 100-120 68-90 (129)
181 1iv0_A Hypothetical protein; r 26.6 85 0.0029 20.0 3.9 26 94-121 36-61 (98)
182 1ur5_A Malate dehydrogenase; o 26.4 84 0.0029 24.7 4.6 49 63-119 69-120 (309)
183 3uhf_A Glutamate racemase; str 26.4 2.3E+02 0.0077 22.0 9.6 68 34-119 27-94 (274)
184 2ayx_A Sensor kinase protein R 26.3 2E+02 0.0069 21.4 6.9 22 100-121 190-211 (254)
185 1pzg_A LDH, lactate dehydrogen 26.0 1.7E+02 0.0057 23.3 6.4 53 63-120 77-134 (331)
186 1t2d_A LDH-P, L-lactate dehydr 25.7 1.7E+02 0.0059 23.1 6.4 53 63-120 71-128 (322)
187 2hjr_A Malate dehydrogenase; m 25.7 1.8E+02 0.0061 23.1 6.5 49 63-119 81-132 (328)
188 2vvt_A Glutamate racemase; iso 25.5 2.4E+02 0.0081 21.9 9.8 69 33-119 26-94 (290)
189 2v6b_A L-LDH, L-lactate dehydr 25.3 1.4E+02 0.0047 23.4 5.7 51 64-119 67-117 (304)
190 1dxe_A 2-dehydro-3-deoxy-galac 25.3 83 0.0028 24.0 4.3 55 48-109 156-210 (256)
191 3ew8_A HD8, histone deacetylas 25.2 2.1E+02 0.0072 23.5 6.8 74 37-118 227-302 (388)
192 3ik2_A Endoglucanase A; TIM-li 25.2 74 0.0025 27.3 4.2 80 88-173 195-275 (517)
193 3pu6_A Uncharacterized protein 24.9 1.8E+02 0.0061 20.3 7.1 40 1-44 3-45 (157)
194 3nl6_A Thiamine biosynthetic b 24.7 1.6E+02 0.0053 25.5 6.2 40 151-196 55-95 (540)
195 3eq2_A Probable two-component 24.5 2E+02 0.0068 23.1 6.8 80 3-120 6-86 (394)
196 3kyj_B CHEY6 protein, putative 24.4 1.5E+02 0.0052 19.3 8.2 81 2-119 13-95 (145)
197 2pl1_A Transcriptional regulat 23.3 1.4E+02 0.0048 18.5 4.8 21 100-120 61-81 (121)
198 1zz1_A Histone deacetylase-lik 23.0 1.7E+02 0.0059 23.8 5.9 53 62-117 255-307 (369)
199 2f5g_A Transposase, putative; 23.0 51 0.0017 22.1 2.4 24 148-171 31-54 (133)
200 4bas_A ADP-ribosylation factor 22.7 2E+02 0.0067 20.0 6.3 12 2-13 17-28 (199)
201 3dz8_A RAS-related protein RAB 22.5 2E+02 0.0068 20.0 6.8 10 4-13 25-34 (191)
202 2dwu_A Glutamate racemase; iso 22.5 2.6E+02 0.009 21.4 9.0 68 34-119 10-77 (276)
203 2jlj_A YSCU, YOP proteins tran 22.2 59 0.002 22.6 2.6 105 91-206 21-130 (144)
204 1xrs_B D-lysine 5,6-aminomutas 22.0 2.7E+02 0.0094 21.4 6.7 65 33-119 157-223 (262)
205 3u95_A Glycoside hydrolase, fa 21.6 3.1E+02 0.011 23.1 7.5 27 94-120 135-161 (477)
206 4h3d_A 3-dehydroquinate dehydr 21.5 2.7E+02 0.0093 21.2 10.7 102 34-172 19-120 (258)
207 2vt1_B Surface presentation of 21.5 85 0.0029 20.0 3.0 53 150-206 25-77 (93)
208 3v7e_A Ribosome-associated pro 21.4 1.5E+02 0.005 18.0 4.5 45 98-172 16-60 (82)
209 3bzy_B ESCU; auto cleavage pro 21.2 68 0.0023 19.9 2.5 51 151-205 26-76 (83)
210 1obb_A Maltase, alpha-glucosid 21.2 2.4E+02 0.0084 23.9 6.7 30 91-120 125-154 (480)
211 3mfq_A TROA, high-affinity zin 20.9 1.2E+02 0.0042 23.4 4.5 49 94-172 197-245 (282)
212 1hjs_A Beta-1,4-galactanase; 4 20.9 3.2E+02 0.011 21.7 12.1 122 90-211 149-287 (332)
213 2fyx_A Transposase, putative; 20.5 71 0.0024 21.8 2.8 23 149-171 42-64 (143)
214 1guz_A Malate dehydrogenase; o 20.5 1.4E+02 0.0048 23.4 4.9 50 63-120 68-120 (310)
215 2j48_A Two-component sensor ki 20.1 1.6E+02 0.0055 17.9 5.1 81 3-121 2-85 (119)
No 1
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-34 Score=225.62 Aligned_cols=221 Identities=33% Similarity=0.526 Sum_probs=179.2
Q ss_pred CceEEEEcccccccccCC---------CcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEc
Q 025869 2 RPQIVLFGDSITQQSFGS---------AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFF 72 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~---------~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~ 72 (247)
+++|++||||++++|++. .+|...|++.+...+.++|.|++|.++.+...++.+.+.. ..+||+|+|++
T Consensus 3 ~~~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~--~~~pd~vvi~~ 80 (240)
T 3mil_A 3 YEKFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILPEILKH--ESNIVMATIFL 80 (240)
T ss_dssp CEEEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTTTTEEEEEEECTTCCHHHHHHHHHHHHHH--CCCEEEEEEEC
T ss_pred cccEEEEccchhhhhcCcccccccchHhHHHHHHHHHhccceEEEecCcCcccHHHHHHHHHHHhcc--cCCCCEEEEEe
Confidence 469999999999657654 2499999999987789999999999999988888776642 24899999999
Q ss_pred cCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHH
Q 025869 73 GANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGV 152 (247)
Q Consensus 73 G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (247)
|+||.... .....+.+++.++++++++.+++. +++|++++++|+......... .........+.++.+.+
T Consensus 81 G~ND~~~~----~~~~~~~~~~~~~l~~~i~~~~~~--~~~vil~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 150 (240)
T 3mil_A 81 GANDACSA----GPQSVPLPEFIDNIRQMVSLMKSY--HIRPIIIGPGLVDREKWEKEK----SEEIALGYFRTNENFAI 150 (240)
T ss_dssp CTTTTSSS----STTCCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCCHHHHHHHC----HHHHHTTCCCCHHHHHH
T ss_pred ecCcCCcc----CCCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCchhhhhhc----cccccccccchHHHHHH
Confidence 99999642 124568999999999999999998 668999999998765432211 00111123456778899
Q ss_pred HHHHHHHHHHhcCCCeeechHHHHhccc-ccccccccccCCChhHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCCCCCC
Q 025869 153 YARQCIETAKDLGVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA--GLSSEEMPYDFPHHSQID 229 (247)
Q Consensus 153 ~~~~~~~~a~~~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~--~~~~~~~p~~~p~~~~~~ 229 (247)
|+++++++|++.++.|||++..+.+..+ ....++.||+|||++||++||+.+++.|++. +..+..+|...|++.+++
T Consensus 151 ~n~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~~~~p~~~~~~~p~~~p~~~~~~ 230 (240)
T 3mil_A 151 YSDALAKLANEEKVPFVALNKAFQQEGGDAWQQLLTDGLHFSGKGYKIFHDELLKVIETFYPQYHPKNMQYKLKDWRDVL 230 (240)
T ss_dssp HHHHHHHHHHHTTCCEECHHHHHHHHHGGGGGGGBSSSSSBCHHHHHHHHHHHHHHHHHHCGGGSGGGSCCCSCCGGGCC
T ss_pred HHHHHHHHHHHhCCeEEehHHHHhhcCCccHhhccCCCCCcCHHHHHHHHHHHHHHHHHhccccChhhCCCCCCChhhcC
Confidence 9999999999999999999998887543 2346789999999999999999999999997 666778999999999998
Q ss_pred CCCcc
Q 025869 230 AKNPE 234 (247)
Q Consensus 230 ~~~~~ 234 (247)
+.++-
T Consensus 231 ~~~~~ 235 (240)
T 3mil_A 231 DDGSN 235 (240)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 87653
No 2
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-32 Score=212.81 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=145.4
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
++|+|+|||+|+ +|...+.+.+.. ..++|+|++|.++.+++.++++... ..+||+|+|++|+||+....
T Consensus 27 ~~Iv~~GDSit~------gw~~~~~~~~~~-~~viN~Gi~G~tt~~~l~r~~~~v~---~~~Pd~vvi~~G~ND~~~~~- 95 (209)
T 4hf7_A 27 KRVVFMGNXITE------GWVRTHPDFFKT-NGYIGRGISGQTSYQFLLRFREDVI---NLSPALVVINAGTNDVAENT- 95 (209)
T ss_dssp CCEEEEESHHHH------HHHHHCHHHHHH-HTEEEEECTTCCHHHHHHHHHHHTG---GGCCSEEEECCCHHHHTTSS-
T ss_pred CeEEEECcHHHh------ChhHHHHHhcCC-CCEEEeccCcccHHHHHHHHHHHHH---hcCCCEEEEEeCCCcCcccc-
Confidence 479999999996 688777777753 3799999999999998888876432 24899999999999986432
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHH
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAK 162 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 162 (247)
...+.+.+.++++.+++.++.. +++|++++++|....+... .....++.+.+||+.++++|+
T Consensus 96 ----~~~~~~~~~~~l~~ii~~~~~~--~~~iil~~~~P~~~~~~~~------------~~~~~~~~i~~~n~~i~~~a~ 157 (209)
T 4hf7_A 96 ----GAYNEDYTFGNIASMAELAKAN--KIKVILTSVLPAAEFPWRR------------EIKDAPQKIQSLNARIEAYAK 157 (209)
T ss_dssp ----SSCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCSCCTTCT------------TCCCHHHHHHHHHHHHHHHHH
T ss_pred ----ccccHHHHHHHHHHhhHHHhcc--CceEEEEeeeccCcccccc------------cccchhHHHHHHHHHHHHHHH
Confidence 3356788999999999999875 8899999998876544222 112345677899999999999
Q ss_pred hcCCCeeechHHHHhccc--ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 163 DLGVPFIDLWSKMQETEG--WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 163 ~~~v~~vD~~~~~~~~~~--~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+.++.|||++..+....+ ....++.||+|||++||++||+.+.+.|++.
T Consensus 158 ~~~v~~iD~~~~~~~~~~~~~~~~~~~DglHpn~~Gy~~~a~~i~~~l~k~ 208 (209)
T 4hf7_A 158 ANKIPFVNYYQPMVVGENKALNPQYTKDGVHPTGEGYDIMEALIKQAIEKA 208 (209)
T ss_dssp HTTCCEECSHHHHEETTTTEECGGGBSSSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCeEeecHHHHhcccccccCcccCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999998865432 2456789999999999999999999999874
No 3
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=2.1e-31 Score=205.07 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=145.9
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCch-HHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNT-RWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t-~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
.|||++||||+|. +|...+.+.+.....+.|.|.+|.++ ......+++... ..+||+|+|++|+||..
T Consensus 20 ~prVl~iGDSit~------G~~~~l~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~pd~Vvi~~G~ND~~-- 88 (200)
T 4h08_A 20 LPHVLLIGNSITR------GYYGKVEAALKEKAYVGRLSNSKSVGDPALIEELAVVLK---NTKFDVIHFNNGLHGFD-- 88 (200)
T ss_dssp SCEEEEEESHHHH------HHHHHHHHHTTTTCEEEEEEESCCTTCHHHHHHHHHHHH---HSCCSEEEECCCSSCTT--
T ss_pred CCeEEEEchhHHh------hhHHHHHHHhccCCeEEEEeccCCccHHHHHHHHHHHHh---cCCCCeEEEEeeeCCCC--
Confidence 5799999999996 69999999998777888988876544 444555655443 24899999999999975
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHH
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIET 160 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (247)
.+.++|.++|+++++.+++.+|+++|++++++|+...... ......+..+..||++++++
T Consensus 89 --------~~~~~~~~~l~~ii~~l~~~~p~~~ii~~~~~P~~~~~~~------------~~~~~~~~~~~~~n~~~~~~ 148 (200)
T 4h08_A 89 --------YTEEEYDKSFPKLIKIIRKYAPKAKLIWANTTPVRTGEGM------------KEFAPITERLNVRNQIALKH 148 (200)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCEESGGG------------CEECTHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHhhhCCCccEEEeccCCCcccccc------------cccchhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999887543211 12344677888999999999
Q ss_pred HHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 161 AKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 161 a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
|+++++.|+|++..+.... ...+..||+|||++||++||+.+++.|++.
T Consensus 149 a~~~~v~~iD~~~~~~~~~--~~~~~~Dg~Hpn~~Gy~~~A~~i~~~i~~~ 197 (200)
T 4h08_A 149 INRASIEVNDLWKVVIDHP--EYYAGGDGTHPIDAGYSALANQVIKVIKNV 197 (200)
T ss_dssp HHHTTCEEECHHHHHTTCG--GGTTTSCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcceEEEecHHhHhcCH--HHhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887653 235678999999999999999999999875
No 4
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=99.97 E-value=9.3e-31 Score=203.52 Aligned_cols=184 Identities=23% Similarity=0.303 Sum_probs=145.8
Q ss_pred CCceEEEEcccccccccC-------------CCcHHHHHHHHhcccCcEEecCCCCCchH---------HHHHHhhhhcC
Q 025869 1 MRPQIVLFGDSITQQSFG-------------SAGWGAALADAYCRKADVLLRGYGGYNTR---------WALFLLHHIFP 58 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~-------------~~~~~~~l~~~~~~~~~v~n~g~~G~~t~---------~~~~~l~~~~~ 58 (247)
|+++|+++|||+| .|++ ..+|+..+++.++..+.++|.|++|.++. ....++...+.
T Consensus 1 ~~~~i~~~GDSit-~G~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~l~~~l~ 79 (216)
T 2q0q_A 1 MAKRILCFGDSLT-WGWVPVEDGAPTERFAPDVRWTGVLAQQLGADFEVIEEGLSARTTNIDDPTDPRLNGASYLPSCLA 79 (216)
T ss_dssp -CEEEEEEESHHH-HTBCCCTTCCCBCBCCTTTSHHHHHHHHHCTTEEEEEEECTTCBSSCCBTTBTTCBHHHHHHHHHH
T ss_pred CCceEEEEecCcc-cCcCCCCCccccccCCcccchHHHHHHHhCCCCeEEecCcCcccccccCCccccccHHHHHHHHHH
Confidence 7899999999999 5654 34799999999977788999999999887 34455554442
Q ss_pred CCCCCCC-cEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC-------CCCeEEEEcCCCCCcchhhhH
Q 025869 59 LDNSNPP-VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-------PIMLVVLITPPPVDEDGRMEY 130 (247)
Q Consensus 59 ~~~~~~~-d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-------p~~~ivl~~~~p~~~~~~~~~ 130 (247)
. .+| |+|+|++|+||+... ...+.+++.++++++++.+++.+ |.++|+++++|+.... +...
T Consensus 80 ~---~~p~d~vvi~~G~ND~~~~------~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~~p~~~~~-~~~~ 149 (216)
T 2q0q_A 80 T---HLPLDLVIIMLGTNDTKAY------FRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVSPPPLAPM-PHPW 149 (216)
T ss_dssp H---HCSCSEEEEECCTGGGSGG------GCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEECCCCCCC-CSHH
T ss_pred h---CCCCCEEEEEecCcccchh------cCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEeCCCcCcc-cCCc
Confidence 1 256 999999999999742 13578999999999999999998 8899999999887653 1111
Q ss_pred hhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHh
Q 025869 131 AKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
. .. .....+....+||++++++|+++++.|+|++..+. .+..||+|||++||++||+.+++.|++
T Consensus 150 ~----~~----~~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~~~~~-------~~~~Dg~Hpn~~G~~~~a~~i~~~l~~ 214 (216)
T 2q0q_A 150 F----QL----IFEGGEQKTTELARVYSALASFMKVPFFDAGSVIS-------TDGVDGIHFTEANNRDLGVALAEQVRS 214 (216)
T ss_dssp H----HH----HTTTHHHHHTTHHHHHHHHHHHHTCCEEEGGGTCC-------CCSTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred c----hh----hhccHHHHHHHHHHHHHHHHHHcCCcEEchhHhcc-------cCCCCccCcCHHHHHHHHHHHHHHHHH
Confidence 1 00 01134556778999999999999999999987764 367899999999999999999999976
No 5
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=99.97 E-value=4.3e-30 Score=196.29 Aligned_cols=181 Identities=30% Similarity=0.424 Sum_probs=148.0
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHh----cc----cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEcc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAY----CR----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFG 73 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~----~~----~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G 73 (247)
+++|+++|||++ .|++..+|...+...+ +. .+.+.|.|++|.++.....++.+... ..+||+|+|++|
T Consensus 1 m~~i~~~GDS~t-~g~~~~~~~~~l~~~l~~~~~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G 76 (195)
T 1yzf_A 1 MRKIVLFGDSIT-AGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVL---IEKPDEVVIFFG 76 (195)
T ss_dssp CEEEEEEESHHH-HCBTTBSSCSHHHHHHHHHHHHTTBCCEEEEEEECTTCCHHHHHHHHHHHTG---GGCCSEEEEECC
T ss_pred CCeEEEEccccc-cCcCCCChHHHHHHHHHHhccccCCceEEEEeCCCCCCCHHHHHHHHHHhhh---hcCCCEEEEEee
Confidence 478999999999 6676667765555544 32 47899999999999988877776543 258999999999
Q ss_pred CccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHH
Q 025869 74 ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVY 153 (247)
Q Consensus 74 ~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
+||.... ...+.+++.++++.+++.++ +++|++++++|..... .....+.....|
T Consensus 77 ~ND~~~~------~~~~~~~~~~~l~~~i~~~~----~~~vi~~~~~p~~~~~---------------~~~~~~~~~~~~ 131 (195)
T 1yzf_A 77 ANDASLD------RNITVATFRENLETMIHEIG----SEKVILITPPYADSGR---------------RPERPQTRIKEL 131 (195)
T ss_dssp TTTTCTT------SCCCHHHHHHHHHHHHHHHC----GGGEEEECCCCCCTTT---------------CTTSCHHHHHHH
T ss_pred ccccCcc------CCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCCCcccc---------------chhhhHHHHHHH
Confidence 9999731 23578999999999999998 6679999998875431 112356678899
Q ss_pred HHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 154 ARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 154 ~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
|++++++|++.++.|+|++..+....++...+..||+|||++||+++|+.+++.|++.
T Consensus 132 n~~~~~~a~~~~~~~iD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~~l~~~ 189 (195)
T 1yzf_A 132 VKVAQEVGAAHNLPVIDLYKAMTVYPGTDEFLQADGLHFSQVGYELLGALIVREIKGR 189 (195)
T ss_dssp HHHHHHHHHHTTCCEECHHHHHHHSTTGGGGBCTTSSSBCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCeEEehHHHHhhcCCccccccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887666567899999999999999999999999886
No 6
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=1.9e-30 Score=204.31 Aligned_cols=182 Identities=22% Similarity=0.259 Sum_probs=146.0
Q ss_pred CceEEEEcccccccccCC---------CcHHHHHHHHhcccCcEEecCCCCCchH----------HHHHHhhhhcCCCCC
Q 025869 2 RPQIVLFGDSITQQSFGS---------AGWGAALADAYCRKADVLLRGYGGYNTR----------WALFLLHHIFPLDNS 62 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~---------~~~~~~l~~~~~~~~~v~n~g~~G~~t~----------~~~~~l~~~~~~~~~ 62 (247)
.++|++||||+| .|++. .+|+..|++.++.++.++|.|++|.++. ....+++..+. .
T Consensus 23 ~~~I~~lGDSit-~G~~~~~~~~~~~~~~w~~~l~~~l~~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~l~~~l~---~ 98 (232)
T 3dci_A 23 MKTVLAFGDSLT-WGADPATGLRHPVEHRWPDVLEAELAGKAKVHPEGLGGRTTCYDDHAGPACRNGARALEVALS---C 98 (232)
T ss_dssp CEEEEEEESHHH-HTBCTTTCCBCCGGGSHHHHHHHHHTTSEEEEEEECTTCBSSCCCCSSSSCCBHHHHHHHHHH---H
T ss_pred CCEEEEEECccc-cCCCCCCcccCCcCCccHHHHHHHhCCCCeEEEcccCCccccccCcccccchhHHHHHHHHHh---h
Confidence 468999999999 56653 5999999999987789999999999985 55566665543 1
Q ss_pred CCC-cEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCcchhhhHhhhhhh
Q 025869 63 NPP-VATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-----PIMLVVLITPPPVDEDGRMEYAKSLYG 136 (247)
Q Consensus 63 ~~~-d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-----p~~~ivl~~~~p~~~~~~~~~~~~~~~ 136 (247)
.+| |+|+|++|+||+.... ..+.+++.++|+++++.+++.+ |+++|++++++++.......+ .
T Consensus 99 ~~p~d~VvI~~GtND~~~~~------~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p~~~~~~~~~~~-----~ 167 (232)
T 3dci_A 99 HMPLDLVIIMLGTNDIKPVH------GGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAPPPCVAGPGGEP-----A 167 (232)
T ss_dssp HCSCSEEEEECCTTTTSGGG------TSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEECCCCCCCTTSSC-----G
T ss_pred CCCCCEEEEEeccCCCcccc------CCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCcCcccCccc-----c
Confidence 367 9999999999998532 2478999999999999999987 899999999988755421010 0
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 137 EKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
. .........|+++++++|++.++.|||++..+. .+..||+|||++||++||+.+++.|++.
T Consensus 168 ~------~~~~~~~~~~~~~~~~~a~~~~v~~iD~~~~~~-------~~~~DgvHpn~~G~~~~A~~l~~~l~~~ 229 (232)
T 3dci_A 168 G------GRDIEQSMRLAPLYRKLAAELGHHFFDAGSVAS-------ASPVDGVHLDASATAAIGRALAAPVRDI 229 (232)
T ss_dssp G------GCCHHHHTTHHHHHHHHHHHHTCEEEEGGGTCC-------CCTTTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred c------ccHHHHHHHHHHHHHHHHHHhCCeEEcchHhcC-------cccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 0 113456678999999999999999999875442 4689999999999999999999999875
No 7
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=99.97 E-value=6e-30 Score=201.32 Aligned_cols=194 Identities=16% Similarity=0.163 Sum_probs=149.4
Q ss_pred ceEEEEcccccccccC--CCcHHHHHHHHhcccCcEEecCCCCCchH----HHHHHhhhhcCCCCCCCCcEEEEEccCcc
Q 025869 3 PQIVLFGDSITQQSFG--SAGWGAALADAYCRKADVLLRGYGGYNTR----WALFLLHHIFPLDNSNPPVATTIFFGAND 76 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~--~~~~~~~l~~~~~~~~~v~n~g~~G~~t~----~~~~~l~~~~~~~~~~~~d~vii~~G~ND 76 (247)
.+|+++|||+| .|++ ..+|+..+.+.++ ...+.|.|++|.++. ....++.+ . ..+||+|+|++|+||
T Consensus 22 ~~i~~lGDSit-~G~g~~~~~~~~~l~~~l~-~~~v~N~g~~G~t~~~~~~~~~~~~~~-~----~~~pd~Vii~~G~ND 94 (232)
T 3dc7_A 22 KRPAWLGDSIT-ANNGLATVHYHDILAADWD-VERSDNLGISGSTIGSRYDAMAVRYQA-I----PEDADFIAVFGGVND 94 (232)
T ss_dssp SSEEEEESTTT-STTCSSSSCHHHHHHHHHT-CSCCEEEECTTCCSSTTSSCHHHHGGG-S----CTTCSEEEEECCHHH
T ss_pred ceEEEEccccc-ccCCCCCCcHHHHHHHHhC-CceeEEeeeCCcccccChHHHHHHHHh-c----CCCCCEEEEEEeccc
Confidence 58999999999 4543 2389999999985 347999999999988 35555555 2 238999999999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHH
Q 025869 77 AALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQ 156 (247)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+..............++|..+|+.+++.+++.+|+++|+++++++........ ........+..+.+|+++
T Consensus 95 ~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 165 (232)
T 3dc7_A 95 YGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGS---------FSAVTNGLGYRQSDYEAA 165 (232)
T ss_dssp HHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTT---------BCSSCCTTSCCHHHHHHH
T ss_pred cccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEeCcccCCccCCc---------ccccccccchHHHHHHHH
Confidence 87643333333356778999999999999999999999999988765432110 001122345567899999
Q ss_pred HHHHHHhcCCCeeechHHHHhcc---cccccccccccCCChhHHHHHHHHHHHHHHhcC
Q 025869 157 CIETAKDLGVPFIDLWSKMQETE---GWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVAG 212 (247)
Q Consensus 157 ~~~~a~~~~v~~vD~~~~~~~~~---~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~~ 212 (247)
++++|+++++.|+|++..+.... .....+..||+|||++||++||+.+.+.|++..
T Consensus 166 i~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~~~~DgvHpn~~G~~~iA~~i~~~l~~~~ 224 (232)
T 3dc7_A 166 IAQMTADYGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDSHF 224 (232)
T ss_dssp HHHHHHHHTCCEEEHHHHSSCCTTSHHHHHHHBSSSSSBCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCcEEecccccCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998854221 123467899999999999999999999999973
No 8
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=99.96 E-value=2e-29 Score=191.41 Aligned_cols=174 Identities=19% Similarity=0.324 Sum_probs=139.3
Q ss_pred CCceEEEEcccccccccC---CCcHHHHHHHHhcc---cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 1 MRPQIVLFGDSITQQSFG---SAGWGAALADAYCR---KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~---~~~~~~~l~~~~~~---~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
|+++|+++|||++ .|++ ..+|+..+.+.+.. .+.+.|.|++|.++.....+++..... .+||+|+|++|+
T Consensus 1 ~~~~i~~~GDSit-~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~---~~pd~vvi~~G~ 76 (185)
T 3hp4_A 1 MDNTILILGDXLS-AAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQ---YEPTHVLIELGA 76 (185)
T ss_dssp -CEEEEEEECTTT-TTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHH---HCCSEEEEECCH
T ss_pred CCCeEEEECCccc-ccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhh---cCCCEEEEEeec
Confidence 6789999999999 5654 35999999998853 478999999999999888777776532 379999999999
Q ss_pred ccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC-CCCcchhhhHhhhhhhhcccccchhhhhhHHHH
Q 025869 75 NDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP-PVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVY 153 (247)
Q Consensus 75 ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
||... ..+.+++.++++++++.+++. ++++++++.+ |... .......|
T Consensus 77 ND~~~--------~~~~~~~~~~~~~~i~~~~~~--~~~vvl~~~~~p~~~---------------------~~~~~~~~ 125 (185)
T 3hp4_A 77 NDGLR--------GFPVKKMQTNLTALVKKSQAA--NAMTALMEIYIPPNY---------------------GPRYSKMF 125 (185)
T ss_dssp HHHHT--------TCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCSTT---------------------CHHHHHHH
T ss_pred ccCCC--------CcCHHHHHHHHHHHHHHHHHc--CCeEEEEeCCCCCcc---------------------cHHHHHHH
Confidence 99964 358899999999999999999 6778888752 2111 01234689
Q ss_pred HHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 154 ARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 154 ~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+++++++|+++++.|+|++..... .....+..||+|||++||++||+.+++.|++.
T Consensus 126 ~~~~~~~a~~~~~~~vd~~~~~~~--~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~~~ 181 (185)
T 3hp4_A 126 TSSFTQISEDTNAHLMNFFMLDIA--GKSDLMQNDSLHPNKKAQPLIRDEMYDSIKKW 181 (185)
T ss_dssp HHHHHHHHHHHCCEEECCTTTTTT--TCGGGBCTTSSSBCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEcchhhhcC--CCcccccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999754322 12346688999999999999999999999864
No 9
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=99.96 E-value=3.5e-29 Score=194.24 Aligned_cols=187 Identities=19% Similarity=0.235 Sum_probs=145.2
Q ss_pred CceEEEEcccccccccC-----------CCcHHHHHHHHhcc-----cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCC
Q 025869 2 RPQIVLFGDSITQQSFG-----------SAGWGAALADAYCR-----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPP 65 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~-----------~~~~~~~l~~~~~~-----~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~ 65 (247)
.++|+++|||+++++.. ..+|+..+.+.+.. .+.+.|.|++|.++.....++..... ..+|
T Consensus 8 ~~~i~~~GDSit~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~---~~~p 84 (216)
T 3rjt_A 8 GSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVM---ALQP 84 (216)
T ss_dssp TCEEEEEESHHHHTTCCSSCEESSTTTTCSSHHHHHHHHHHHHCGGGCCEEEECCCTTCCHHHHHHHHHHHTG---GGCC
T ss_pred CCEEEEEeccccccCCCcccccccccccCccHHHHHHHHHHhhCCCCCeEEEECCCCCccHHHHHHHHHhHHh---hcCC
Confidence 35999999999954221 36899999988743 37899999999999988777654332 2479
Q ss_pred cEEEEEccCccccccCCCC--CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccc
Q 025869 66 VATTIFFGANDAALFGRTS--ERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLP 143 (247)
Q Consensus 66 d~vii~~G~ND~~~~~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~ 143 (247)
|+|+|++|+||........ .....+.++|.++++++++.+++. +++++++++++..... .
T Consensus 85 d~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~~~vil~~p~~~~~~~----------------~ 146 (216)
T 3rjt_A 85 DYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPR--VREMFLLSPFYLEPNR----------------S 146 (216)
T ss_dssp SEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGG--SSEEEEECCCCCCCCT----------------T
T ss_pred CEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhc--CCeEEEECCCcCCCCc----------------c
Confidence 9999999999987431100 001456899999999999999999 8889999865433221 1
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcc--cccccccccccCCChhHHHHHHHHHHHHHH
Q 025869 144 ERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETE--GWQKKFLSDGLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 144 ~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~--~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~ 209 (247)
...+....+||++++++|+++++.|+|++..+.+.. .....+..||+|||++||++||+.+++.|.
T Consensus 147 ~~~~~~~~~~n~~~~~~a~~~~~~~vD~~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~l~ 214 (216)
T 3rjt_A 147 DPMRKTVDAYIEAMRDVAASEHVPFVDVQAEFDRLLAHLNTWVLAPDRVHPYLNGHLVIARAFLTAVG 214 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCCEECHHHHHHHHHTTSCHHHHCSSSSSCCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCeEEEcHHHHHHHHhcCCCcccccCCcCCChHHHHHHHHHHHHHhc
Confidence 124667889999999999999999999999888752 233467899999999999999999999874
No 10
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=99.96 E-value=1.7e-29 Score=194.58 Aligned_cols=178 Identities=24% Similarity=0.297 Sum_probs=143.3
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRT 83 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~ 83 (247)
+|+++|||+++ +|...+.+.+.. ..++|.|++|.++.....++.+... ..+||+|+|++|+||.....
T Consensus 24 ~i~~~GDSit~------g~~~~~~~~~~~-~~v~n~g~~G~~~~~~~~~~~~~~~---~~~pd~vvi~~G~ND~~~~~-- 91 (204)
T 3p94_A 24 NVVFMGNSITD------GWWPADSTFFIR-NNFVDRGISGQTTSEMLVRFRQDVI---NLKPKAVVILAGINDIAHNN-- 91 (204)
T ss_dssp EEEEEESHHHH------THHHHCTTHHHH-HTEEEEECTTCCHHHHHHHHHHHTG---GGCEEEEEEECCHHHHTTTT--
T ss_pred eEEEEccchhh------cccchHHHhccc-CceEEcccCcccHHHHHHHHHHHHH---hCCCCEEEEEeecCcccccc--
Confidence 89999999996 576665555543 3799999999999988777765433 24799999999999998532
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHh
Q 025869 84 SERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKD 163 (247)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 163 (247)
...+.+++.++++.+++.+++ ++++|++++++|.....+.+ ....+.....||++++++|++
T Consensus 92 ---~~~~~~~~~~~~~~~i~~~~~--~~~~vil~~~~p~~~~~~~~-------------~~~~~~~~~~~n~~l~~~a~~ 153 (204)
T 3p94_A 92 ---GVIALENVFGNLVSMAELAKA--NHIKVIFCSVLPAYDFPWRP-------------GMQPADKVIQLNKWIKEYADK 153 (204)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHHH--TTCEEEEECCCCCSCBTTBT-------------TCCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHh--CCCeEEEEeCCCCCCCCCCc-------------cccHHHHHHHHHHHHHHHHHH
Confidence 225789999999999999998 48899999998876543221 012456778999999999999
Q ss_pred cCCCeeechHHHHhccc-ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 164 LGVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 164 ~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+++.|+|++..+.+..+ ....+..||+|||++||++||+.+++.|++.
T Consensus 154 ~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~l~~~l~~~ 202 (204)
T 3p94_A 154 NGLTYVDYHSAMKDERNGLPANLSKDGVHPTLEGYKIMEKIVLEAIHKT 202 (204)
T ss_dssp TTCEEECHHHHHCCTTSSCCTTTBSSSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEchhhhhhcccccccccccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999876543 2346789999999999999999999999874
No 11
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=99.96 E-value=1.7e-28 Score=187.22 Aligned_cols=173 Identities=17% Similarity=0.281 Sum_probs=139.1
Q ss_pred ceEEEEcccccccccC---CCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 3 PQIVLFGDSITQQSFG---SAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~---~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
++|+++|||++ .|++ ..+|+..+.+.++..+.+.|.|++|.++.....+++..+.. .+||+|+|++|+||...
T Consensus 2 ~~i~~~GDSit-~g~~~~~~~~~~~~l~~~l~~~~~v~n~g~~G~~~~~~~~~~~~~~~~---~~pd~Vii~~G~ND~~~ 77 (190)
T 1ivn_A 2 DTLLILGDSLS-AGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQ---HQPRWVLVELGGNDGLR 77 (190)
T ss_dssp EEEEEEECHHH-HCSSSCGGGSHHHHHHHHC-CCEEEEECCCTTCCHHHHHHHHHHHHHH---HCCSEEEEECCTTTTSS
T ss_pred CcEEEEecCcc-cCCCCCCCcCHHHHHHHHhccCcEEEecCCCCchHHHHHHHHHHHHHh---cCCCEEEEEeecccccc
Confidence 68999999999 5554 35899999999987678999999999998887777765432 37999999999999974
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC-CCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHH
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP-PVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCI 158 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (247)
..+.+++.++++++++.+++. ++++++++++ |... .......+|++++
T Consensus 78 --------~~~~~~~~~~l~~li~~~~~~--~~~vil~~~~~p~~~---------------------~~~~~~~~n~~~~ 126 (190)
T 1ivn_A 78 --------GFQPQQTEQTLRQILQDVKAA--NAEPLLMQIRLPANY---------------------GRRYNEAFSAIYP 126 (190)
T ss_dssp --------SCCHHHHHHHHHHHHHHHHHT--TCEEEEECCCCCGGG---------------------CHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHc--CCCEEEEeccCCcch---------------------hHHHHHHHHHHHH
Confidence 257899999999999999998 6778888752 2110 0124568999999
Q ss_pred HHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhcC
Q 025869 159 ETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVAG 212 (247)
Q Consensus 159 ~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~~ 212 (247)
++|+++++.|+|++...... ....+..||+|||++||++||+.+.+.|++..
T Consensus 127 ~~a~~~~v~~iD~~~~~~~~--~~~~~~~Dg~Hpn~~G~~~~a~~i~~~l~~~~ 178 (190)
T 1ivn_A 127 KLAKEFDVPLLPFFMEEVYL--KPQWMQDDGIHPNRDAQPFIADWMAKQLQPLV 178 (190)
T ss_dssp HHHHHTTCCEECCTHHHHHT--CGGGBCTTSSSBCGGGHHHHHHHHHHHHTTTT
T ss_pred HHHHHcCCeEEccHHhhccC--CchhhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998543321 12357789999999999999999999999873
No 12
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=99.96 E-value=1e-28 Score=191.82 Aligned_cols=178 Identities=26% Similarity=0.422 Sum_probs=142.9
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
+++|+++|||++. |+ +|. +.++....+.|.|++|.++.....++..... ..+||+|+|++|+||...
T Consensus 34 ~~~i~~~GDSit~-g~---~~~----~~l~~~~~v~n~g~~G~~~~~~~~~l~~~~~---~~~pd~vvi~~G~ND~~~-- 100 (214)
T 2hsj_A 34 EPNILFIGDSIVE-YY---PLQ----ELFGTSKTIVNRGIRGYQTGLLLENLDAHLY---GGAVDKIFLLIGTNDIGK-- 100 (214)
T ss_dssp CCSEEEEESHHHH-TC---CHH----HHHCSSSCEEEEECTTCCHHHHHHTGGGGCC---CSCCCEEEEECCHHHHHT--
T ss_pred cCCEEEEecchhc-CC---CHH----HHcCCcceEEecCccchhHHHHHHHhhHHHH---hcCCCEEEEEEecCcCCc--
Confidence 4589999999995 43 565 4455556789999999999988777766332 348999999999999974
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHH
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETA 161 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 161 (247)
+.+.+++.++++.+++.+++.+|+++|++++++|.......... .....+.....+|++++++|
T Consensus 101 ------~~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~----------~~~~~~~~~~~~n~~l~~~a 164 (214)
T 2hsj_A 101 ------DVPVNEALNNLEAIIQSVARDYPLTEIKLLSILPVNEREEYQQA----------VYIRSNEKIQNWNQAYQELA 164 (214)
T ss_dssp ------TCCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCCCSGGGHHH----------HTTCCHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccccccc----------cccccHHHHHHHHHHHHHHH
Confidence 25789999999999999999999999999999988755321100 11234667889999999999
Q ss_pred Hhc-CCCeeechHHHHhccc-ccccccccccCCChhHHHHHHHHHHHHH
Q 025869 162 KDL-GVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVF 208 (247)
Q Consensus 162 ~~~-~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l 208 (247)
+++ ++.|+|++..+.+..+ ....++.||+|||++||++||+.+++.|
T Consensus 165 ~~~~~~~~iD~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~~l 213 (214)
T 2hsj_A 165 SAYMQVEFVPVFDCLTDQAGQLKKEYTTDGLHLSIAGYQALSKSLKDYL 213 (214)
T ss_dssp TTCTTEEEECCGGGSBCTTSSBCGGGBSSSSSBCHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEhHHHHhCcCCchhhhccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999 9999999998876432 3446788999999999999999999887
No 13
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=99.96 E-value=4e-29 Score=196.81 Aligned_cols=186 Identities=20% Similarity=0.262 Sum_probs=138.7
Q ss_pred eEEEEccccccccc---CCCcHHHHHHHHhcccCcEEecCCCCCchHHHHH--HhhhhcCCCCCCCCcEEEEEccCcccc
Q 025869 4 QIVLFGDSITQQSF---GSAGWGAALADAYCRKADVLLRGYGGYNTRWALF--LLHHIFPLDNSNPPVATTIFFGANDAA 78 (247)
Q Consensus 4 ~i~~~GDS~~~~g~---~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~--~l~~~~~~~~~~~~d~vii~~G~ND~~ 78 (247)
+|+++|||+++++. ...+|+..|++.++ +.++|.|++|.++..+.. +++..+.. ..++|+|+|++|+||..
T Consensus 2 ~I~~~GDS~t~g~~~~~~~~gw~~~l~~~l~--~~v~N~gi~G~tt~~~~~~~r~~~~l~~--~~~~d~ViI~~G~ND~~ 77 (233)
T 1k7c_A 2 TVYLAGDSTMAKNGGGSGTNGWGEYLASYLS--ATVVNDAVAGRSARSYTREGRFENIADV--VTAGDYVIVEFGHNDGG 77 (233)
T ss_dssp EEEEECCTTTSTTTTSTTCCCGGGGSGGGBS--SEEEECCCTTCCHHHHHHTTHHHHHHHH--CCTTCEEEECCCTTSCS
T ss_pred EEEEEecCCCcCCCCCCCCCCHHHHHHHhCC--ceEEecccCCccHHHHHHcccHHHHHhh--CCCCCEEEEEccCCCCC
Confidence 79999999995432 23589999998887 889999999999987653 45554432 12459999999999997
Q ss_pred ccCCCCCC-----------------CCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccc
Q 025869 79 LFGRTSER-----------------QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMK 141 (247)
Q Consensus 79 ~~~~~~~~-----------------~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~ 141 (247)
.......+ +..+.++|.++|+++++.+++. ++++|+++++|..... . +
T Consensus 78 ~~~~~~~r~~~~g~g~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--g~~vil~tp~p~~~~~--~------~----- 142 (233)
T 1k7c_A 78 SLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAK--GAKVILSSQTPNNPWE--T------G----- 142 (233)
T ss_dssp CGGGCCSCCCBSSSSSCEEEEEETTEEEEEEBHHHHHHHHHHHHHHT--TCEEEEECCCCCCTTT--T------S-----
T ss_pred CcCCcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHC--CCEEEEECCCCccccC--C------C-----
Confidence 53100000 1123578999999999999988 6789999988754211 0 0
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHHhcc---c---ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 142 LPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQETE---G---WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~---~---~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
..+.....|+++++++|++++++|||++..+.+.. + ....+..||+|||++||++||+.+++.|++.
T Consensus 143 ---~~~~~~~~y~~~~~~vA~~~~v~~iD~~~~~~~~~~~~g~~~~~~~~~~DgiHpn~~G~~~iA~~i~~~l~~~ 215 (233)
T 1k7c_A 143 ---TFVNSPTRFVEYAELAAEVAGVEYVDHWSYVDSIYETLGNATVNSYFPIDHTHTSPAGAEVVAEAFLKAVVCT 215 (233)
T ss_dssp ---SCCCCCCHHHHHHHHHHHHHTCEEECHHHHHHHHHHHHCHHHHHHTCSSSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccchHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHhChhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 11223458999999999999999999998876531 1 1224458999999999999999999999986
No 14
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=99.96 E-value=1.8e-28 Score=197.62 Aligned_cols=200 Identities=19% Similarity=0.179 Sum_probs=146.0
Q ss_pred ceEEEEcccccccccC-----CCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 3 PQIVLFGDSITQQSFG-----SAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~-----~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
.+|+++|||+|+ |++ ..+| ..|++.++ +.+.|.|++|.++..+..++++++.. ...+||+|+|++|+||+
T Consensus 27 ~~iv~lGDSiT~-G~~~~~~~~~~w-~~l~~~l~--~~v~N~G~~G~tt~~~~~~~~~~l~~-~~~~pd~V~I~~G~ND~ 101 (274)
T 3bzw_A 27 KKVGYIGDSITD-PNCYGDNIKKYW-DFLKEWLG--ITPFVYGISGRQWDDVPRQAEKLKKE-HGGEVDAILVFMGTNDY 101 (274)
T ss_dssp CEEEEEESTTTC-TTTTGGGCCCHH-HHHHHHHC--CEEEECCCTTCCGGGHHHHHHHHHHH-HTTTCCEEEEECCHHHH
T ss_pred CEEEEEecCccc-CCCCCCccCccH-HHHHHHhC--CeEEEeecCCCCHHHHHHHHHHHHhc-cCCCCCEEEEEEecccC
Confidence 589999999994 543 2478 89999887 88999999999988777766665431 12489999999999999
Q ss_pred cccCCCCCC-------------------------CCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhh
Q 025869 78 ALFGRTSER-------------------------QHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAK 132 (247)
Q Consensus 78 ~~~~~~~~~-------------------------~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~ 132 (247)
......+.. ...+.++|.++|+.+++.+++.+|+++|+++++++..........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~lr~~~p~a~Iilitp~~~~~~~~~~~~- 180 (274)
T 3bzw_A 102 NSSVPIGEWFTEQEEQVLSAHGEMKKMVTRKKRTPVMTQDTYRGRINIGITQLKKLFPDKQIVLLTPLHRSLANFGDKN- 180 (274)
T ss_dssp HTTCCCCCSEEEEEEEEEEEESSCCEEEEEEEEEECCCSSSHHHHHHHHHHHHHHHCTTSEEEEECCCCCCCEECSTTE-
T ss_pred cccCCCccccccchhhhhcccchhhcccccccccccCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccccccccccccc-
Confidence 754321110 134567899999999999999999999999999876542110000
Q ss_pred hhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHH-hcc--cccccc---cccccCCChhHHHHHHHHHHH
Q 025869 133 SLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQ-ETE--GWQKKF---LSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~-~~~--~~~~~~---~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
.. .......+.+....+|+++++++|+++++.|||++..+. +.. .....+ ..||+|||++||++||+.+..
T Consensus 181 --~~-p~~~~~~~~~~~~~~~n~~i~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~iA~~i~~ 257 (274)
T 3bzw_A 181 --VQ-PDESYQNGCGEYIDAYVQAIKEAGNIWGIPVIDFNAVTGMNPMVEEQLIYFYDAGYDRLHPDTKGQERMARTLMY 257 (274)
T ss_dssp --EE-CCTTBCCTTSCCHHHHHHHHHHHHHHHTCCEECHHHHTCCCTTSGGGGGGEEETTTEEEEECHHHHHHHHHHHHH
T ss_pred --cC-cccccchhhHHHHHHHHHHHHHHHHHcCCCEEcchhhhccCccccccccccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 00 000011123455779999999999999999999999885 211 122233 589999999999999999988
Q ss_pred HHHhc
Q 025869 207 VFSVA 211 (247)
Q Consensus 207 ~l~~~ 211 (247)
.|.+.
T Consensus 258 ~ll~~ 262 (274)
T 3bzw_A 258 QLLAL 262 (274)
T ss_dssp HGGGS
T ss_pred HHhcc
Confidence 88765
No 15
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=99.96 E-value=1.7e-28 Score=191.27 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=141.6
Q ss_pred ceEEEEcccccccccC---CCcHHHHHHHHhc---ccCcEEecCCCCCchHHHHHHhhh-hcCCCCCCCCcEEEEEccCc
Q 025869 3 PQIVLFGDSITQQSFG---SAGWGAALADAYC---RKADVLLRGYGGYNTRWALFLLHH-IFPLDNSNPPVATTIFFGAN 75 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~---~~~~~~~l~~~~~---~~~~v~n~g~~G~~t~~~~~~l~~-~~~~~~~~~~d~vii~~G~N 75 (247)
.+|+++|||++ .|++ ..+|+..+.+.+. ..+.+.|.|++|.++.....++.. ........+||+|+|++|+|
T Consensus 21 ~~i~~lGDSit-~g~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~N 99 (218)
T 1vjg_A 21 IRICFVGDSFV-NGTGDPECLGWTGRVCVNANKKGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLN 99 (218)
T ss_dssp EEEEEEESHHH-HTTTCTTSCHHHHHHHHHHHHTTEEEEEEEEECTTCCHHHHHHHHHHHHHTTCCTTSEEEEEEECCHH
T ss_pred ceEEEEccccc-cCCCCCCCCCHHHHHHHHHHhcCCCeEEEeCCCCCcCHHHHHHHhHHhhhhhhccCCCCEEEEEecCC
Confidence 48999999999 5554 3589999998874 357899999999999887777655 33321234899999999999
Q ss_pred cccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHH
Q 025869 76 DAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYAR 155 (247)
Q Consensus 76 D~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
|...... ....+.+++.++++++++.+++. ++|++++++|..... ....+....+||+
T Consensus 100 D~~~~~~---~~~~~~~~~~~~l~~li~~l~~~---~~iil~~~~p~~~~~----------------~~~~~~~~~~~n~ 157 (218)
T 1vjg_A 100 DTTLENG---KPRVSIAETIKNTREILTQAKKL---YPVLMISPAPYIEQQ----------------DPGRRRRTIDLSQ 157 (218)
T ss_dssp HHCEETT---EESSCHHHHHHHHHHHHHHHHHH---SCEEEECCCCCCCTT----------------CTTHHHHHHHHHH
T ss_pred cchhhcc---cccCCHHHHHHHHHHHHHHHHHh---CcEEEECCCCccccc----------------cchHHHHHHHHHH
Confidence 9973100 12468899999999999999998 679999998873200 0124567789999
Q ss_pred HHHHHHHhcCCCeeechHHHHhccccccccc-ccccCCChhHHHHHHHHHHH
Q 025869 156 QCIETAKDLGVPFIDLWSKMQETEGWQKKFL-SDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 156 ~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~-~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
+++++|++.++.|+|++..+....++...++ .||+|||++||++||+.+++
T Consensus 158 ~l~~~a~~~~v~~iD~~~~~~~~~~~~~~~~~~DgvHpn~~G~~~~A~~i~~ 209 (218)
T 1vjg_A 158 QLALVCQDLDVPYLDVFPLLEKPSVWLHEAKANDGVHPQAGGYTEFARIVEN 209 (218)
T ss_dssp HHHHHHHHHTCCEECCTGGGSTTSSHHHHHHHTTSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcEEehHHhhccchhhhhhccccCCCCCCHHHHHHHHHHHHc
Confidence 9999999999999999998887654333344 59999999999999999987
No 16
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=99.96 E-value=4.3e-28 Score=190.75 Aligned_cols=175 Identities=21% Similarity=0.273 Sum_probs=139.7
Q ss_pred CceEEEEcccccccccCC-CcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGS-AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~-~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|++||||+++ |++. ..|... +. ++.++|.|++|.++.....++.+..- ...+||+|+|++|+||+.
T Consensus 38 ~~~i~~~GDSit~-g~~~~~~~~~~----l~-~~~v~n~g~~G~t~~~~~~~~~~~~l--~~~~pd~vvi~~G~ND~~-- 107 (232)
T 1es9_A 38 EPEVVFIGDSLVQ-LMHQCEIWREL----FS-PLHALNFGIGGDSTQHVLWRLENGEL--EHIRPKIVVVWVGTNNHG-- 107 (232)
T ss_dssp CCSEEEEESHHHH-THHHHSCHHHH----TG-GGCEEEEECTTCCHHHHHHHHHTTTT--TTCCCSEEEEECCTTCTT--
T ss_pred CCCEEEEechHhh-ccCccccHHHH----CC-CCceEEeecccccHHHHHHHHhcCcc--ccCCCCEEEEEeecCCCC--
Confidence 3589999999995 3321 234433 43 46899999999999987777665211 134899999999999996
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHH-
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIE- 159 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (247)
.+.+++.++++++++.+++.+|+++|++++++|...... ..+....++|+++++
T Consensus 108 --------~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~~~p~~~~~~-----------------~~~~~~~~~n~~l~~~ 162 (232)
T 1es9_A 108 --------HTAEQVTGGIKAIVQLVNERQPQARVVVLGLLPRGQHPN-----------------PLREKNRRVNELVRAA 162 (232)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCSSSCC-----------------HHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHHHCCCCeEEEecCCCCCCCch-----------------hHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988754321 234567799999999
Q ss_pred HHHhcCCCeeechHHHHhccc-ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 160 TAKDLGVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 160 ~a~~~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+|++.++.|||++..+.+..+ ....++.||+|||++||++||+.+.+.|++.
T Consensus 163 ~a~~~~v~~iD~~~~~~~~~g~~~~~~~~Dg~Hpn~~G~~~~a~~i~~~l~~~ 215 (232)
T 1es9_A 163 LAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRL 215 (232)
T ss_dssp HHSCTTEEEECCCCCCSCTTSCCCTTTBTTSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCEEEeChHHhcCCCCCcChhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 888899999999998876433 2245667999999999999999999999987
No 17
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=99.95 E-value=3.7e-28 Score=190.79 Aligned_cols=175 Identities=21% Similarity=0.274 Sum_probs=139.8
Q ss_pred CceEEEEcccccccccCC-CcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGS-AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~-~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
..+|++||||+++ |++. ..|.. .+. ++.++|.|++|.++.....++.+..- ...+||+|+|++|+||+.
T Consensus 39 ~~~i~~~GDSit~-g~~~~~~~~~----~~~-~~~v~n~g~~G~t~~~~~~~~~~~~l--~~~~pd~vvi~~G~ND~~-- 108 (229)
T 1fxw_F 39 EPDVLFVGDSMVQ-LMQQYEIWRE----LFS-PLHALNFGIGGDTTRHVLWRLKNGEL--ENIKPKVIVVWVGTNNHE-- 108 (229)
T ss_dssp CCSEEEEESHHHH-GGGGSHHHHH----HTG-GGTEEEEECTTCCHHHHHHHHHTTTT--SSCCCSEEEEECCTTCTT--
T ss_pred CCCEEEEecchhc-CCCCchhHHH----HcC-CCcceeeccCcchHHHHHHHHHcCcc--ccCCCCEEEEEEecCCCC--
Confidence 3589999999995 4432 23543 343 47899999999999988777665211 135899999999999993
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHH
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIET 160 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (247)
.+.+++.++|+.+++.+++.+|+++|++++++|...... ..+.....+|++++++
T Consensus 109 --------~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~-----------------~~~~~~~~~n~~l~~~ 163 (229)
T 1fxw_F 109 --------NTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPN-----------------PLRQKNAKVNQLLKVS 163 (229)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSSCC-----------------HHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCCCCchh-----------------hHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999988654321 2455677999999999
Q ss_pred HH-hcCCCeeechHHHHhccc-ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 161 AK-DLGVPFIDLWSKMQETEG-WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 161 a~-~~~v~~vD~~~~~~~~~~-~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
|. +.++.|+|++..+.+..+ ....++.||+|||++||++||+.+.+.|++.
T Consensus 164 a~~~~~v~~iD~~~~~~~~~g~~~~~~~~DgvHpn~~G~~~~a~~l~~~l~~~ 216 (229)
T 1fxw_F 164 LPKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQL 216 (229)
T ss_dssp SSSSSSEEEECCCCSCBCTTSCBCTTTBTTSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCeEEEeCHHHhhccCCCcchhhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 97 689999999988875432 2346678999999999999999999999987
No 18
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=99.95 E-value=3.4e-27 Score=197.31 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=138.5
Q ss_pred CceEEEEcccccccccCC----CcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 2 RPQIVLFGDSITQQSFGS----AGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~----~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
+++|+++|||+| .|++. .+|+..+++.++ ++++|.|++|.++... ..+.+.+. ..+||+|||++|+||+
T Consensus 185 ~~~Iv~~GDSiT-~G~g~~~~~~~w~~~la~~l~--~~viN~GisG~~~~~~-~~~~~~l~---~~~pdlVvI~lGtND~ 257 (385)
T 3skv_A 185 KPHWIHYGDSIC-HGRGAASPSRTWLALAARAEG--LDLQSLSFAADGSHLQ-PMFARLIR---DLPADLISLRVGTSNF 257 (385)
T ss_dssp CCEEEEEECSSC-TTTTCSSGGGSHHHHHHHHHT--CEEEEECCTGGGGSCC-HHHHHHHH---HSCCSEEEEEESHHHH
T ss_pred CceEEEEecccc-CCCCCCCCCCCHHHHHHHhcC--CcEEEeecCCCcccHH-HHHHHHHh---ccCCCEEEEEeeccCC
Confidence 468999999999 56542 489999999987 7899999999432211 11222221 1379999999999999
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHH
Q 025869 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQC 157 (247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (247)
... .+.+++.++++.+++.+++.+|+++|+++++++.......+ ........+..+.+++++
T Consensus 258 ~~~--------~~~~~~~~~l~~li~~ir~~~P~a~Illv~p~~~P~~~~~p----------~~~~~~l~~~~~~l~~~~ 319 (385)
T 3skv_A 258 MDG--------DGFVDFPANLVGFVQIIRERHPLTPIVLGSSVYSPFWDELP----------ADDKPTVADYREQVVKVA 319 (385)
T ss_dssp TTT--------CCTTTHHHHHHHHHHHHHTTCSSSCEEEEECCCCTTTTTSC----------CTTSCCHHHHHHHHHHHH
T ss_pred CCC--------CCHHHHHHHHHHHHHHHHHHCCCCcEEEEcCCCCcccccCC----------ccchhhHHHHHHHHHHHH
Confidence 742 57899999999999999999999999999987542111000 000112334455777788
Q ss_pred HHHHHh--cCCCeeechHHHHhccc---ccccccccccCCChhHHHHHHHHHHHHHHhcCCCC
Q 025869 158 IETAKD--LGVPFIDLWSKMQETEG---WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVAGLSS 215 (247)
Q Consensus 158 ~~~a~~--~~v~~vD~~~~~~~~~~---~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~~~~~ 215 (247)
+++|++ .++.|||....+..... ....+..||+|||++||++||+.+++.|++.+..|
T Consensus 320 ~~lA~~g~~~v~~vd~~~l~~~~~~~~~~~~l~~~DGlHPn~~Gy~~mA~~l~~~L~~~g~~p 382 (385)
T 3skv_A 320 ELLRKHGDQNVHYLDGMRVWGPERGMELYLEKPDKYPTHPNAVGHEIFAESSRREMAALGVLP 382 (385)
T ss_dssp HHHHHTTCTTEEEECHHHHSCTTCCGGGBCSCTTSCCCSBCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCCEEEEecHHHcCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 888876 78999999766544321 11347899999999999999999999999986654
No 19
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=99.94 E-value=8e-26 Score=189.36 Aligned_cols=184 Identities=21% Similarity=0.204 Sum_probs=139.6
Q ss_pred ceEEEEcccccccccC-----CCcHHHHHHHHhccc-CcEEecCCCCCchHHHHH--HhhhhcCCCCCCCC-cEEEEEcc
Q 025869 3 PQIVLFGDSITQQSFG-----SAGWGAALADAYCRK-ADVLLRGYGGYNTRWALF--LLHHIFPLDNSNPP-VATTIFFG 73 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~-----~~~~~~~l~~~~~~~-~~v~n~g~~G~~t~~~~~--~l~~~~~~~~~~~~-d~vii~~G 73 (247)
.+|+++|||+++++++ ..+|+..|.+.+... +.+.|.|++|.++..++. +++..+. ..+| |+|+|++|
T Consensus 163 ~~Iv~lGDSiT~G~~g~~~~~~~~w~~~L~~~L~~~~~~v~N~GisG~tt~~~l~~~rl~~~l~---~~~p~d~VvI~~G 239 (375)
T 2o14_A 163 RTIYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDKHTFQVRNMASGGQIARGFRNDGQLEAILK---YIKPGDYFMLQLG 239 (375)
T ss_dssp CEEEEEECTTTSCCSSTTTCSBCCHHHHGGGTSCTTTCEEEECCCTTCCHHHHHHSSHHHHHHT---TCCTTCEEEEECC
T ss_pred cEEEEecCccccCCcCCCCCCCCCHHHHHHHHhccCCceEEEeccCCCcHhhhhhcccHHHHHH---hCCCCCEEEEEEE
Confidence 4999999999953142 458999999998743 669999999999987763 5555443 2367 99999999
Q ss_pred CccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHH
Q 025869 74 ANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVY 153 (247)
Q Consensus 74 ~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
+||+... ...+.+++.++|+++++.++++ +++||++++++.... + .. ....+.....|
T Consensus 240 ~ND~~~~------~~~~~~~~~~~l~~ii~~lr~~--~a~vilvtP~~~~~~----~-----~~-----~~~~~~~~~~~ 297 (375)
T 2o14_A 240 INDTNPK------HKESEAEFKEVMRDMIRQVKAK--GADVILSTPQGRATD----F-----TS-----EGIHSSVNRWY 297 (375)
T ss_dssp TGGGCGG------GCCCHHHHHHHHHHHHHHHHTT--TCEEEEECCCCCTTC----B-----CT-----TSCBCCTTSTT
T ss_pred ccCCCcc------CCCCHHHHHHHHHHHHHHHHHC--CCEEEEECCCCcccc----c-----Cc-----ccchhHHHHHH
Confidence 9999753 1247899999999999999988 678999986653210 0 00 01123345678
Q ss_pred HHHHHHHHHhcCCCeeechHHHHhcc---c---ccccc-cccccCCChhHHHHHHHHHHHHHHhc
Q 025869 154 ARQCIETAKDLGVPFIDLWSKMQETE---G---WQKKF-LSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 154 ~~~~~~~a~~~~v~~vD~~~~~~~~~---~---~~~~~-~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+++++++|+++++.|||++..+.+.. + ....+ ..||+|||++||++||+.+.+.|++.
T Consensus 298 ~~~i~~lA~~~~v~~iDl~~~~~~~~~~~g~~~~~~~~~~~DgvHpn~~G~~~~A~~i~~~L~~~ 362 (375)
T 2o14_A 298 RASILALAEEEKTYLIDLNVLSSAYFTSIGPERTLGLYMDGDTLHPNRAGADALARLAVQELKRQ 362 (375)
T ss_dssp HHHHHHHHHHTTCEEECHHHHHHHHHHHHCHHHHHTTBCTTCSSSBBHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEehHHHHHHHHHhcCcccchhhhcCCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999876521 1 12233 47999999999999999999999987
No 20
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=99.94 E-value=4.3e-27 Score=182.98 Aligned_cols=172 Identities=19% Similarity=0.234 Sum_probs=127.8
Q ss_pred ceEEEEcccccccccC---CCcHHHHHHHHhcc---cCcEE--------------ecCCCCCchHHHHHHhhhhcCCCCC
Q 025869 3 PQIVLFGDSITQQSFG---SAGWGAALADAYCR---KADVL--------------LRGYGGYNTRWALFLLHHIFPLDNS 62 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~---~~~~~~~l~~~~~~---~~~v~--------------n~g~~G~~t~~~~~~l~~~~~~~~~ 62 (247)
.+|+++|||+| .|++ ..+|+..+.+.+.. .+.++ |.|++|.++.....+++..+. .
T Consensus 6 ~~i~~~GDSit-~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~---~ 81 (215)
T 2vpt_A 6 IKIMPVGDSCT-EGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLN---T 81 (215)
T ss_dssp EEEEEEESHHH-HTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHH---H
T ss_pred eEEEecccccc-cCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhh---c
Confidence 48999999999 5554 34899999988753 23444 899999999988777776542 2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhccccc
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKL 142 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~ 142 (247)
.+||+|+|++|+||+.... +...++++.+++.+++.+|+++|++++++|....
T Consensus 82 ~~pd~vvi~~G~ND~~~~~----------~~~~~~l~~li~~i~~~~p~~~ii~~~~~p~~~~----------------- 134 (215)
T 2vpt_A 82 HNPDVVFLWIGGNDLLLNG----------NLNATGLSNLIDQIFTVKPNVTLFVADYYPWPEA----------------- 134 (215)
T ss_dssp HCCSEEEEECCHHHHHHHC----------CCCHHHHHHHHHHHHHHCTTCEEEEECCCSCSGG-----------------
T ss_pred cCCCEEEEEccccccCCCC----------ChhHHHHHHHHHHHHHhCCCCEEEEEeCCCChHH-----------------
Confidence 3799999999999997432 1125789999999999999999999998876321
Q ss_pred chhhhhhHHHHHHHHHHHH-HhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 143 PERTNEMTGVYARQCIETA-KDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~a-~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
....++. +++..++.+ .+.++.|+|++..+.+.. ..+..||+|||++||++||+.+++.|++.
T Consensus 135 ~~~~n~~---l~~~~~~~~~~~~~v~~iD~~~~~~~~~---~~~~~Dg~Hpn~~G~~~~a~~i~~~l~~~ 198 (215)
T 2vpt_A 135 IKQYNAV---IPGIVQQKANAGKKVYFVKLSEIQFDRN---TDISWDGLHLSEIGYKKIANIWYKYTIDI 198 (215)
T ss_dssp GHHHHTT---HHHHHHHHHHTTCCEEEECGGGSCCCHH---HHBCTTSSSBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHhcCCCEEEEeccccccCcc---ccccCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 0112222 222223332 257899999998776432 35789999999999999999999998875
No 21
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A
Probab=99.92 E-value=1.2e-24 Score=177.89 Aligned_cols=206 Identities=16% Similarity=0.108 Sum_probs=141.9
Q ss_pred ceEEEEcccccccccCC-----------------CcHHHHHHHHhccc----CcEEecCCCCCchHHHHHHh--------
Q 025869 3 PQIVLFGDSITQQSFGS-----------------AGWGAALADAYCRK----ADVLLRGYGGYNTRWALFLL-------- 53 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~-----------------~~~~~~l~~~~~~~----~~v~n~g~~G~~t~~~~~~l-------- 53 (247)
.+|++||||++ .|++. .+|+..+++.++.. +++.|.|++|.++.......
T Consensus 6 ~~~valGDS~t-aG~g~~~~~~~~~~~~~c~rs~~~y~~~la~~l~~~~~~~~~~~n~a~sG~tt~~~~~~~~~~~~~~~ 84 (306)
T 1esc_A 6 VPTVFFGDSYT-ANFGIAPVTNQDSERGWCFQAKENYPAVATRSLADKGITLDVQADVSCGGALIHHFWEKQELPFGAGE 84 (306)
T ss_dssp EEEEECCSHHH-HTTTCSSBTTTTSGGGGGTCBTTCHHHHHHHHHHTTTCEEEEEEECCCTTCCGGGGTSCEECGGGCCE
T ss_pred ceEEEECchhh-hCCCCCCCCCCcCCCCCCcCCccCHHHHHHHHhccccCCcceEEEeeccCcccccccccccccccccc
Confidence 38999999999 56541 46999999998743 68999999999998643221
Q ss_pred --hhhcCCCCCCCCcEEEEEccCcccccc----CCCC--C-------CC-----------------------CCChhHHH
Q 025869 54 --HHIFPLDNSNPPVATTIFFGANDAALF----GRTS--E-------RQ-----------------------HVPVEEYG 95 (247)
Q Consensus 54 --~~~~~~~~~~~~d~vii~~G~ND~~~~----~~~~--~-------~~-----------------------~~~~~~~~ 95 (247)
.++.. ...++|+|+|++|+||+... .+.. . .+ ....+++.
T Consensus 85 ~~~ql~~--l~~~~dlV~i~iGgND~~~~~~~~~c~~~~~~~~~~~~~p~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 162 (306)
T 1esc_A 85 LPPQQDA--LKQDTQLTVGSLGGNTLGFNRILKQCSDELRKPSLLPGDPVDGDEPAAKCGEFFGTGDGKQWLDDQFERVG 162 (306)
T ss_dssp ECCGGGG--CCTTCCEEEECCCHHHHTHHHHHHHTCTTTTSSCSSCCCCSSTTSCGGGHHHHTTTSHHHHHHHHHHHHHH
T ss_pred chhHHHh--ccCCCCEEEEEecCCcccHHHHHHHHhccccccccccCCcccccccCCcchhhhhcccchHHHHHHHHHHH
Confidence 01111 23479999999999998422 0000 0 00 00123488
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCCcchh-hhHhh---hhhhhccccc---chhhhhhHHHHHHHHHHHHHhcCCCe
Q 025869 96 DNLKIMVQHLKRLSPIMLVVLITPPPVDEDGR-MEYAK---SLYGEKAMKL---PERTNEMTGVYARQCIETAKDLGVPF 168 (247)
Q Consensus 96 ~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~-~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~v~~ 168 (247)
.+|+.+++.++++.|+++|+++++|++..... ..+.. .....-.... ....+.....+|++++++|+++|+.|
T Consensus 163 ~~l~~il~~ir~~~p~a~I~lvgyp~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~A~~~g~~~ 242 (306)
T 1esc_A 163 AELEELLDRIGYFAPDAKRVLVGYPRLVPEDTTKCLTAAPGQTQLPFADIPQDALPVLDQIQKRLNDAMKKAAADGGADF 242 (306)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEECCCCCSCSCGGGGGSCCTTCSSCTTTTCCTTTHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCChhccCCCCCCCcCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999999999887643221 00000 0000000011 33456778899999999999999999
Q ss_pred eechHHHHhcc------ccccc------------ccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 169 IDLWSKMQETE------GWQKK------------FLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 169 vD~~~~~~~~~------~~~~~------------~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
||++..+..+. .+... ...|++|||++||+.||+.+.+.|++.
T Consensus 243 vD~~~~f~~~~~c~~~~~w~~~~~~~~~~~~~~~~~~d~~HPn~~G~~~iA~~v~~~l~~~ 303 (306)
T 1esc_A 243 VDLYAGTGANTACDGADRGIGGLLEDSQLELLGTKIPWYAHPNDKGRDIQAKQVADKIEEI 303 (306)
T ss_dssp ECTGGGCTTSSTTSTTSCSBCCSSSEEEEESSSCEEECSSCBCHHHHHHHHHHHHHHHHHH
T ss_pred EeCcccccCCCCCCCchhhhhcccccccccccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999886553 12111 137999999999999999999999864
No 22
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=99.90 E-value=2.2e-23 Score=172.91 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=121.0
Q ss_pred CceEEEEcccccccccCC-----------------CcHHHHHHHHhcccCcEEecCCCCCch---------HHHHHHhhh
Q 025869 2 RPQIVLFGDSITQQSFGS-----------------AGWGAALADAYCRKADVLLRGYGGYNT---------RWALFLLHH 55 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~-----------------~~~~~~l~~~~~~~~~v~n~g~~G~~t---------~~~~~~l~~ 55 (247)
+++|+++|||+| .|++. .+|+..+++.++.. +.+.+++|.+. .....++.+
T Consensus 122 ~~~I~~iGDSiT-~G~g~~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~--~~~~~~sG~~~~~n~g~~g~~~~~~~~~~ 198 (341)
T 2wao_A 122 ERKIEFIGDSIT-CAYGNEGTSKEQSFTPKNENSYMSYAAITARNLNAS--ANMIAWSGIGLTMNYGGAPGPLIMDRYPY 198 (341)
T ss_dssp SEEEEEEESHHH-HTTTTTCCCTTSCCCGGGCCGGGSHHHHHHHHTTEE--EEEEECTTCCSSCCGGGCCCCCHHHHTTE
T ss_pred CceEEEEccccc-cCCCccCCCcCCCCCcccccchhhhHHHHHHHhCCc--eeEEeeccceEEecCCCCCCCChhHHhhh
Confidence 358999999999 56541 38999999999744 44444443211 122334433
Q ss_pred hcC------CCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhh
Q 025869 56 IFP------LDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRME 129 (247)
Q Consensus 56 ~~~------~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~ 129 (247)
... .....+||+|+|++|+||+.... ...+++.++|+.+++.+|+++|+++|+++++|+.....
T Consensus 199 ~~~~~~~~~d~~~~~PdlVvI~lGtND~~~~~-------~~~~~~~~~l~~li~~ir~~~p~a~Iil~~pp~~~~~~--- 268 (341)
T 2wao_A 199 TLPYSGVRWDFSKYVPQVVVINLGTNDFSTSF-------ADKTKFVTAYKNLISEVRRNYPDAHIFCCVGPMLWGTG--- 268 (341)
T ss_dssp EETTTTEECCGGGCCCSEEEEECCHHHHSSSC-------CCHHHHHHHHHHHHHHHHHHCTTCEEEEEECSSCCHHH---
T ss_pred ccCCCcccccccCCCCCEEEEeCccccCCCCC-------CCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCcCCch---
Confidence 321 01135899999999999997532 24689999999999999999999999999876553211
Q ss_pred HhhhhhhhcccccchhhhhhHHHHHHHHHHHHH--hcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHH
Q 025869 130 YAKSLYGEKAMKLPERTNEMTGVYARQCIETAK--DLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEV 207 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~ 207 (247)
. ... ...++++++++++ +.++.|+|+...+. ..++.||+|||++||++||+.+++.
T Consensus 269 -~------------~~~---~~~i~~~~~~~~~a~~~~v~~vD~~~~~~------~~~~~DglHPn~~G~~~mA~~l~~~ 326 (341)
T 2wao_A 269 -L------------DLC---RSYVTEVVNDCNRSGDLKVYFVEFPQQDG------STGYGEDWHPSIATHQLMAERLTAE 326 (341)
T ss_dssp -H------------HHH---HHHHHHHHHHHHHTTCCSEEEEECCCCCS------TTCCCGGGCCCHHHHHHHHHHHHHH
T ss_pred -h------------hHH---HHHHHHHHHHHHhcCCCcEEEEEcccccC------ccCcCCCCCcCHHHHHHHHHHHHHH
Confidence 0 011 1233444444443 56789999975432 2346899999999999999999999
Q ss_pred HHhc
Q 025869 208 FSVA 211 (247)
Q Consensus 208 l~~~ 211 (247)
|++.
T Consensus 327 l~~~ 330 (341)
T 2wao_A 327 IKNK 330 (341)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9886
No 23
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=99.89 E-value=1.5e-22 Score=168.19 Aligned_cols=167 Identities=18% Similarity=0.150 Sum_probs=117.7
Q ss_pred ceEEEEcccccccccCC----------------CcHHHHHHHHhcccCcEEecCCCCCc---------h-HHHHHHhhhh
Q 025869 3 PQIVLFGDSITQQSFGS----------------AGWGAALADAYCRKADVLLRGYGGYN---------T-RWALFLLHHI 56 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~----------------~~~~~~l~~~~~~~~~v~n~g~~G~~---------t-~~~~~~l~~~ 56 (247)
++|++||||+| .|++. .+|+..+++.++.. +.+.+++|.. + ....+++.++
T Consensus 133 ~~I~~iGDSIT-~G~g~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~--~~~~~~sG~gv~~~~~g~~~~~~~~~~~~r~ 209 (347)
T 2waa_A 133 RKILVLGDSVT-CGEAIDRVAGEDKNTRWWNARESYGMLTAKALDAQ--VQLVCWGGRGLIRSWNGKTDDANLPDFYQFT 209 (347)
T ss_dssp EEEEEEESTTT-TTTTTTCCTTSCCCGGGCCSTTSHHHHHHHHTTEE--EEEEECTTCCSSCCTTSCSSSCCHHHHTTBS
T ss_pred ceEEEeecccc-ccCCCCCCCCCCCCccccchhhhhHHHHHHHhCCc--hheEeecCceEEeccCCCCCCCCHHHHHHhh
Confidence 48999999999 56541 38999999999844 4454443321 1 1233455554
Q ss_pred cCC--------CCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhh
Q 025869 57 FPL--------DNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRM 128 (247)
Q Consensus 57 ~~~--------~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~ 128 (247)
... ....+||+|+|++|+||+.... .+.++|.++++.+++.+|+.+|+++|+++++|.... +
T Consensus 210 ~~~~~~~~~~d~~~~~Pd~VvI~lG~ND~~~~~-------~~~~~~~~~l~~li~~ir~~~p~~~I~l~~~p~~~~-~-- 279 (347)
T 2waa_A 210 LGDTGQAPQWDHHRYQPDLIISAIGTNDFSPGI-------PDRATYINTYTRFVRTLLDNHPQATIVLTEGAILNG-D-- 279 (347)
T ss_dssp SCCSTTCCBCCGGGCCCSEEEECCCHHHHSSSC-------CCHHHHHHHHHHHHHHHHHHCTTCEEEECCCSSCCH-H--
T ss_pred ccccCCCccCccccCCCCEEEEEccccCCCCCC-------CcHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCccCC-c--
Confidence 311 1134899999999999997532 345799999999999999999999999998644321 1
Q ss_pred hHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhc---CCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHH
Q 025869 129 EYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDL---GVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVV 205 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~ 205 (247)
....+++.+++++++. ++.|+|+..... .. ||+|||++||++||+.++
T Consensus 280 --------------------~~~~~~~~i~~~~~~~~~~~v~~id~~~~~~------~~---DglHPn~~G~~~~A~~l~ 330 (347)
T 2waa_A 280 --------------------KKAALVSYIGETRQQLHSNRVFYASSSHHPG------DN---SDAHPTKDQHAAMARELT 330 (347)
T ss_dssp --------------------HHHHHHHHHHHHHHHHCCTTEEECCCCCCCC------BT---TBSSCCHHHHHHHHHHHH
T ss_pred --------------------hhhHHHHHHHHHHHHhCCCCEEEEEccCcCC------CC---CCCCcCHHHHHHHHHHHH
Confidence 0124455555555543 678899864321 11 999999999999999999
Q ss_pred HHHHhc
Q 025869 206 EVFSVA 211 (247)
Q Consensus 206 ~~l~~~ 211 (247)
+.|++.
T Consensus 331 ~~l~~~ 336 (347)
T 2waa_A 331 PQLRQI 336 (347)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999886
No 24
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus}
Probab=99.87 E-value=1.3e-21 Score=163.59 Aligned_cols=175 Identities=17% Similarity=0.199 Sum_probs=115.5
Q ss_pred CceEEEEcccccccccC-------------------CCcHHHHHHHHhcccCcEEecCCCCCch----------HHHHHH
Q 025869 2 RPQIVLFGDSITQQSFG-------------------SAGWGAALADAYCRKADVLLRGYGGYNT----------RWALFL 52 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~-------------------~~~~~~~l~~~~~~~~~v~n~g~~G~~t----------~~~~~~ 52 (247)
+.+|+++|||+| .|++ ..+|+..+++.++.+ +.+.+++|.+. ....++
T Consensus 142 ~~~I~~iGDSIT-~G~g~~~~~~~~~~~~~~~~~~~~~~y~~~la~~L~~~--~~~~~~sG~~v~~~~gg~~~g~~~~~~ 218 (366)
T 2w9x_A 142 KRQIEFIGDSFT-VGYGNTSPSRECTDEELFKTTNSQMAFGPLTAKAFDAD--YQINASSGFGIVRNYNGTSPDKSLLSL 218 (366)
T ss_dssp CCEEEEEESHHH-HTTTTTCSCSCCCHHHHHHHCCGGGSHHHHHHHHHTCE--EEEEECTTCCSSCCGGGCSTTCCHHHH
T ss_pred CceEEEEecccc-ccCcccCCCCCCCcccccceecccccHHHHHHHHhCCc--eeEEeecCceEEeCCCCCCCCCCHHHH
Confidence 358999999999 5554 358999999999844 44544444321 012344
Q ss_pred hhhhc------CCCCCCCCcEEEEEccCccccccCCCCCCCC---CChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCC
Q 025869 53 LHHIF------PLDNSNPPVATTIFFGANDAALFGRTSERQH---VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVD 123 (247)
Q Consensus 53 l~~~~------~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~ 123 (247)
+.++. ......+||+|+|++|+||+......+.... ...+++.++|+++++.+|+++|+++|+++++|...
T Consensus 219 ~~r~~~~~~~~~~~~~~~Pd~VvI~lGtND~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ir~~~p~a~Iil~~pp~~~ 298 (366)
T 2w9x_A 219 YPYTLNNPDQLYHNKHWKPQVIVIGLGTNDFSTALNDNERWKTREALHADYVANYVKFVKQLHSNNARAQFILMNSDQSN 298 (366)
T ss_dssp TTBSSSSTTCBCCCTTCCCSEEEEECCHHHHSSCCCTTSSCCSHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEESCGG
T ss_pred HHHhcCCCccccccccCCCCEEEEeCccCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCcC
Confidence 44432 1112358999999999999865321110000 01478999999999999999999999999864331
Q ss_pred cchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHH--HhcCCCeeechHHHHhcccccccccccccCCChhHHHHHH
Q 025869 124 EDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETA--KDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVH 201 (247)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA 201 (247)
. . ..+ .+.+.+++++ .+.++.|+|+.. .....|++|||++||++||
T Consensus 299 -~---~----------------~~~---~i~~~~~~~~~~~~~~v~~vd~~~---------~~~~~dd~HPn~~G~~~mA 346 (366)
T 2w9x_A 299 -G---E----------------IAE---QVGKVVAQLKGGGLHQVEQIVFKG---------LDYSGCHWHPSANDDQLLA 346 (366)
T ss_dssp -G---H----------------HHH---HHHHHHHHHHHTTCCCEEEEEECC---------CCCCBGGGBCCHHHHHHHH
T ss_pred -c---h----------------HHH---HHHHHHHHHHhcCCCcEEEEEccC---------CCCCCCCCCcCHHHHHHHH
Confidence 0 0 111 2222333333 346788999751 1335567999999999999
Q ss_pred HHHHHHHHhc
Q 025869 202 KEVVEVFSVA 211 (247)
Q Consensus 202 ~~l~~~l~~~ 211 (247)
+.+++.|++.
T Consensus 347 ~~l~~~I~~~ 356 (366)
T 2w9x_A 347 NLLITHLQQK 356 (366)
T ss_dssp HHHHHHHHTB
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 25
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=99.57 E-value=2.8e-14 Score=127.24 Aligned_cols=194 Identities=18% Similarity=0.143 Sum_probs=135.2
Q ss_pred ceEEEEcccccccccC-----------------------------CCcHHHHHHHHhccc---C--------------cE
Q 025869 3 PQIVLFGDSITQQSFG-----------------------------SAGWGAALADAYCRK---A--------------DV 36 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~-----------------------------~~~~~~~l~~~~~~~---~--------------~v 36 (247)
++|++||||+++.|.. +.-|.+.|++.++.. . .-
T Consensus 16 ~~i~~FGDS~sDtGn~~~~~~~~~~~~~~~~~~g~~~~~Gr~s~~G~~~~D~ia~~lgl~~~~l~p~~~~~~~~~~~~~G 95 (632)
T 3kvn_X 16 STLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGNQLGIAPGDLAASTSPVNAQQGIADG 95 (632)
T ss_dssp SCEEEECSTTTCCSCSBCTTSSTTCBCCSSCBCSSSCCTTSSCCBCCCHHHHHHHHTTCCGGGGSBSSCHHHHHHTCCCC
T ss_pred ccEEEEccccccCCCcccccCCcCCccccccCCCCccccCcccccCCchHHHHHHHcCCCccccCccccccccccccccC
Confidence 5899999999997632 113678899888632 1 12
Q ss_pred EecCCCCCchHHHHH----------------------HhhhhcCC-CCCCCCcEEEEEccCccccccCCCCCCCCCChhH
Q 025869 37 LLRGYGGYNTRWALF----------------------LLHHIFPL-DNSNPPVATTIFFGANDAALFGRTSERQHVPVEE 93 (247)
Q Consensus 37 ~n~g~~G~~t~~~~~----------------------~l~~~~~~-~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~ 93 (247)
.|++.+|.++...+. .+.+.... .......+++|++|.||+...-.. .....+.
T Consensus 96 ~NfA~gGa~~~~~l~~~~~~~~~~~~l~~ql~~~~~~~l~~~~~~~~~~~~~sL~~v~iG~ND~~~~~~~---~~~~~~~ 172 (632)
T 3kvn_X 96 NNWAVGGYRTDQIYDSITAANGSLIERDNTLLRSRDGYLVDRARQGLGADPNALYYITGGGNDFLQGRIL---NDVQAQQ 172 (632)
T ss_dssp SBCCCTTCCHHHHHHHHHSTTCEEEEETTEEEEEECCHHHHHHTTTCCCCTTSEEEECCSHHHHHTTCCC---SHHHHHH
T ss_pred ceEeeccccccccccccccccccccccchhHHHHHHHHHHHHhhccCccCCCCEEEEEEechhhhccccc---ChHHHHH
Confidence 599999988632111 11111111 123456899999999998643100 1113456
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcC--CCeeec
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG--VPFIDL 171 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~--v~~vD~ 171 (247)
+++.+...|+.+.+.+ ..+|+|++.||+++.+... ...+.+..|+....||+.+++...+.+ +.++|+
T Consensus 173 ~v~~~~~~v~~L~~~G-ar~~~v~~~pp~gc~P~~~---------~~~c~~~~n~~~~~~N~~L~~~l~~l~~~i~~~D~ 242 (632)
T 3kvn_X 173 AAGRLVDSVQALQQAG-ARYIVVWLLPDLGLTPATF---------GGPLQPFASQLSGTFNAELTAQLSQAGANVIPLNI 242 (632)
T ss_dssp HHHHHHHHHHHHHHTT-CCCEEEECCCCGGGSTTTT---------TSTTHHHHHHHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred HHHHHHHHHHHHHHcC-CcEEEEeCCCCCCCccccc---------CCCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 7888889999999885 3369999999988876521 124567788899999999999998876 678899
Q ss_pred hHHHHhcc-------------------------------------cccccccccccCCChhHHHHHHHHHHHHHH
Q 025869 172 WSKMQETE-------------------------------------GWQKKFLSDGLHLTEEGNAVVHKEVVEVFS 209 (247)
Q Consensus 172 ~~~~~~~~-------------------------------------~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~ 209 (247)
+..+.+.. +..+++++|++|||+++|++||+.++..+.
T Consensus 243 y~~~~~~~~np~~yGf~~~~~~~~cCg~g~~C~~~~~~~~~~~C~~~~~y~fwD~~HpTe~~~~~ia~~~~~~~~ 317 (632)
T 3kvn_X 243 PLLLKEGMANPASFGLAADQNLIGTCFSGNGCTMNPTYGINGSTPDPSKLLFNDSVHPTITGQRLIADYTYSLLS 317 (632)
T ss_dssp HHHHHHHHHCGGGGTCCTTSCTTTCBSSCTTSCBCTTTSTTSSSCCGGGCSBSSSSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHhcCCCcCCCCccccCCCCccCCcccccccccCCCccceEEecCCCCHHHHHHHHHHHHHhccC
Confidence 88765411 112467889999999999999999999774
No 26
>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis}
Probab=99.28 E-value=1.4e-10 Score=92.10 Aligned_cols=187 Identities=11% Similarity=0.040 Sum_probs=124.2
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhh------c----CC-------------C
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHI------F----PL-------------D 60 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~------~----~~-------------~ 60 (247)
||++||.|++. . ........|....+.++.+.+..++|++..+-.+..... . .. .
T Consensus 12 rVL~IGNS~t~-n-~~p~~l~~la~a~g~~~~v~~~~igG~~L~~H~~~~~~~~~~~~y~k~~~~g~~~~~~~~~~~~~L 89 (271)
T 4i8i_A 12 KVLAIGNSFSQ-D-AVEQYLHELGEAEGITMIIGNMFIGGCSLERHVQNIRNNAPAYAYRKVEKDGEKTETRSMTIEKAL 89 (271)
T ss_dssp EEEEEESHHHH-H-HHSSSHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHTTCCCEEEEEECTTSCEEEEEEECHHHHH
T ss_pred EEEEECCCCCc-C-cHHHHHHHHHHhcCCceEEEEEecCCccHHHHHhccccccccccccccccCCccccccchhHHHHh
Confidence 89999999993 2 111233344443455566778999999887654433221 0 00 0
Q ss_pred CCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEcCCCCCcchhhhHhhhhhhhcc
Q 025869 61 NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDEDGRMEYAKSLYGEKA 139 (247)
Q Consensus 61 ~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~ 139 (247)
...++|+||+.-++.-.. ..+.|...+.++++.+|+.. |++++++..+=+.......... .
T Consensus 90 ~~~~wD~VilQe~S~~~~-----------~~~~~~~~~~~l~~~ir~~~~p~ak~il~~TWa~~~~~~~~~f----~--- 151 (271)
T 4i8i_A 90 ADEKWDYISVQQASPLSG-----------IYDSYKASLPELVNYIRERIGKETVLMMHQTWAYATNANHTGF----K--- 151 (271)
T ss_dssp HHSCCSEEEECCCGGGTT-----------CHHHHHHHHHHHHHHHHTTSCTTCEEEEEECCCCCTTCCCGGG----G---
T ss_pred hcCCCCEEEeCCCCCCCC-----------CHHHHHHHHHHHHHHHHhhcCCCCEEEEEeccCCCCCCCcccc----c---
Confidence 124789999975553222 46888999999999999998 9999999876433222110000 0
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhcCC-CeeechHHHHhcc--cccccccccccCCCh-hHHHHHHHHHHHHHHhc
Q 025869 140 MKLPERTNEMTGVYARQCIETAKDLGV-PFIDLWSKMQETE--GWQKKFLSDGLHLTE-EGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~a~~~~v-~~vD~~~~~~~~~--~~~~~~~~Dg~Hp~~-~G~~~iA~~l~~~l~~~ 211 (247)
.......++.+.+.++.++++.+.++ .+++.-.+|.... .....++.||+|||. .|+-+.|-.++..|...
T Consensus 152 -~~~~~~~~m~~~l~~ay~~~a~~~~~~~viPvG~a~~~~~~~~p~~~l~~Dg~Hps~~~GsYLaA~v~y~~L~g~ 226 (271)
T 4i8i_A 152 -NYDQNQMKMYTSIVDAVKKAANLVGIKKIIPSGTAIQNARTSFIGDHMNRDGYHLDLTIGRYTAACTWFEALTHR 226 (271)
T ss_dssp -GGTTCHHHHHHHHHHHHHHHHHHHTCCEEEEHHHHHHHHHHSTTCSCCBSSSSSBCTTHHHHHHHHHHHHHHHCC
T ss_pred -ccCccHHHHHHHHHHHHHHHHHhcCCCEEeeHHHHHHHHHHhCcCccccCCCCCCCCccCHHHHHHHHHHHHhCC
Confidence 00111234566777888888888898 5999998887642 122355699999999 99999999999999664
No 27
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.61A {Clostridium acetobutylicum} SCOP: c.23.10.7
Probab=98.06 E-value=9.1e-05 Score=59.32 Aligned_cols=158 Identities=12% Similarity=0.065 Sum_probs=102.1
Q ss_pred cHHHHHHHHh-cccCcEEecCCCCCchH-------HHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChh
Q 025869 21 GWGAALADAY-CRKADVLLRGYGGYNTR-------WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVE 92 (247)
Q Consensus 21 ~~~~~l~~~~-~~~~~v~n~g~~G~~t~-------~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~ 92 (247)
.+...|.+.+ +..+.+++.+++|...+ .....+.+..........+-|+..-|-+|.... ..+
T Consensus 59 ~Fa~~L~~~l~~vpVGlI~~a~GGT~Ie~W~~~~~ly~~~l~~~~~a~~~~~ikGvlWyQGEsd~~~~---------~~~ 129 (290)
T 1zmb_A 59 SFADAWSQKNQEDIIGLIPCAEGGSSIDEWALDGVLFRHALTEAKFAMESSELTGILWHQGESDSLNG---------NYK 129 (290)
T ss_dssp HHHHHHHHSCSSSEEEEEECCCTTCCGGGGCTTSHHHHHHHHHHHHHHTSSEEEEEEEECCGGGSSSS---------CST
T ss_pred HHHHHHHHhCCCCCEEEEEccCCCeeHHHhCCCcccHHHHHHHHHHhccCCCeeEEEEEecCCCcCCC---------CHH
Confidence 3455565555 44577899999997442 111112111110012466889999999999631 367
Q ss_pred HHHHHHHHHHHHHHHhC--CCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHh-cCCCee
Q 025869 93 EYGDNLKIMVQHLKRLS--PIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKD-LGVPFI 169 (247)
Q Consensus 93 ~~~~~l~~~i~~~~~~~--p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~v~~v 169 (247)
.|.+.+..+++.+|+.. |..+++++...+... . .+ .+ ........+++++++++.+ .++.++
T Consensus 130 ~Y~~~l~~lI~~wR~~~~~~~lPf~~vql~~~~~-~-~~-----~~--------~~~~~~~~ireaQ~~~~~~~pn~~~v 194 (290)
T 1zmb_A 130 VYYKKLLLIIEALRKELNVPDIPIIIGGLGDFLG-K-ER-----FG--------KGCTEYNFINKELQKFAFEQDNCYFV 194 (290)
T ss_dssp THHHHHHHHHHHHHHHTTCSSSCEEEECCCTTTT-T-SG-----GG--------TTCTTHHHHHHHHHHHHHHSTTEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcCC-C-Cc-----cc--------cccchHHHHHHHHHHHHHhCCCEEEE
Confidence 89999999999999987 788899998876541 1 00 00 0001234667777776654 456666
Q ss_pred echHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 170 DLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 170 D~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+..+.. ...|++|||.+|++.+++.++....+.
T Consensus 195 ~t~dl~---------~~~d~iHp~~~~k~~vG~RlA~~al~~ 227 (290)
T 1zmb_A 195 TASGLT---------CNPDGIHIDAISQRKFGLRYFEAFFNR 227 (290)
T ss_dssp CCTTCC---------BCTTSSSBCHHHHHHHHHHHHHHHHHT
T ss_pred EcCCCC---------CCCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 664311 125899999999999999999998886
No 28
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=97.20 E-value=0.0019 Score=53.72 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCC-CeeechH
Q 025869 95 GDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGV-PFIDLWS 173 (247)
Q Consensus 95 ~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v-~~vD~~~ 173 (247)
-..++.+++.+++. ++.++++.+|--+. +... ++ ...+..+.|.+.|+..+++.|+ .++|+..
T Consensus 275 y~Dlql~L~~~k~~--~~~vlfVi~PVNgk--Wydy---------tG---l~~e~r~~~~~KIk~~l~s~Gf~~i~D~s~ 338 (407)
T 3bma_A 275 YNDLQLVLTQFSKS--KVNPIFIIPPVNKK--WMDY---------AG---LREDMYQQTVQKIRYQLESQGFTNIADFSK 338 (407)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEECCCCHH--HHHH---------TT---CCHHHHHHHHHHHHHHHHTTTCCCEEECTT
T ss_pred HHHHHHHHHHHHHc--CCceEEEEeCCchH--HHHh---------cC---CCHHHHHHHHHHHHHHHHHCCCcceeeccc
Confidence 34589999999999 77788887654321 1110 01 1234677899999999999999 9999965
Q ss_pred HHHhcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 174 KMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 174 ~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
. +...+++.|-+||.-+|=-.+-+.|.+.+.+.
T Consensus 339 ~-----~yepYfm~DtiHlGw~GWv~~Dk~I~~f~~~~ 371 (407)
T 3bma_A 339 D-----GGEPFFMKDTIHLGWLGWLAFDKAVDPFLSNP 371 (407)
T ss_dssp C-----TTSTTCBSSSSCBCTTHHHHHHHHHHHHHHSC
T ss_pred c-----CCCCceeeecccCchhHHHHHHHHHHHHHhCC
Confidence 3 23458999999999999999999999999885
No 29
>2apj_A Putative esterase; AT4G34215, CAR esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} SCOP: c.23.10.7
Probab=97.17 E-value=0.0093 Score=46.84 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=87.7
Q ss_pred cHHHHHHHHh---cccCcEEecCCCCCchHH-------HHHHhhhh---cCCCCCCCCcEEEEEccCccccccCCCCCCC
Q 025869 21 GWGAALADAY---CRKADVLLRGYGGYNTRW-------ALFLLHHI---FPLDNSNPPVATTIFFGANDAALFGRTSERQ 87 (247)
Q Consensus 21 ~~~~~l~~~~---~~~~~v~n~g~~G~~t~~-------~~~~l~~~---~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~ 87 (247)
.+...|.+.+ +..+.+++.+++|..... ....+.+. +. .....+-|+..=|-+|....
T Consensus 97 ~Fg~~L~~~l~~~~vpVglI~~A~GGt~i~~W~~~~~ly~~~i~~~~~al~--~~~~ikGvlWyQGEsn~~~~------- 167 (260)
T 2apj_A 97 AFANAVKNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRK--CGGEIKAVLWYQGESDVLDI------- 167 (260)
T ss_dssp HHHHHHHHHHTCTTCCEEEEECCCTTCCGGGGSTTSHHHHHHHHHHHHHGG--GSCEEEEEEEECCGGGSSSH-------
T ss_pred HHHHHHHHhhccCCCeEEEEEeCCCCCcHHHHCCCcchHHHHHHHHHHhhc--cCCceEEEEEecCCCCCCCc-------
Confidence 3566776665 334778899999975421 11122221 11 01345678888898888621
Q ss_pred CCChhHHHHHHHHHHHHHHHhC--CCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHh--
Q 025869 88 HVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKD-- 163 (247)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-- 163 (247)
.+.+.|.+.+..+|+..|+.. |..+++++...+... . ...+++...+
T Consensus 168 -~~~~~Y~~~l~~lI~~wR~~~~~~~lPf~~vql~~~~~---------------------~-------~~~iReaQ~~~~ 218 (260)
T 2apj_A 168 -HDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASGGG---------------------Y-------IDKVREAQLGLK 218 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCTTCCEEEEECSCCCT---------------------T-------HHHHHHHHHHCC
T ss_pred -cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeccccc---------------------h-------HHHHHHHHHhcc
Confidence 126889999999999999975 577888888755421 1 1222222222
Q ss_pred -cCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHHHHHh
Q 025869 164 -LGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSV 210 (247)
Q Consensus 164 -~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~ 210 (247)
.++.++...+. ....|++||+.+|++.+++.++....+
T Consensus 219 ~pn~~~v~t~dl---------g~~~D~iHp~~k~~~~vG~RlA~~al~ 257 (260)
T 2apj_A 219 LSNVVCVDAKGL---------PLKSDNLHLTTEAQVQLGLSLAQAYLS 257 (260)
T ss_dssp CTTEEEEECTTS---------CBCTTSSSBCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEccCC---------CCCCCCcCCCcHHHHHHHHHHHHHHHH
Confidence 23333333211 113588999999999999998877654
No 30
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=96.49 E-value=0.014 Score=48.50 Aligned_cols=183 Identities=13% Similarity=0.120 Sum_probs=103.0
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc---ccCcEEecCCCCCchHHHHHHhhhhcCCC---CCCCCcEEEEEccCccc
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC---RKADVLLRGYGGYNTRWALFLLHHIFPLD---NSNPPVATTIFFGANDA 77 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~---~~~~v~n~g~~G~~t~~~~~~l~~~~~~~---~~~~~d~vii~~G~ND~ 77 (247)
||.++|+|.++ .....|...+. -..+++..+++. +...+.... ...+||+|++..-.-++
T Consensus 24 riavlg~~T~~------~l~~~l~~~~~~~g~~~~~~~~~y~~--------~~~~ll~~~s~l~~~~pd~v~~~~~~~~~ 89 (387)
T 3nvb_A 24 KVALLGDTATQ------LLATAIKGEGILRNYNIELWEAEYNQ--------VERQIMDPTSDYYQFEPDYTIIFHSTHKL 89 (387)
T ss_dssp EEEEEESSCCH------HHHHHHHHHHHHTTCEEEEEECCTTC--------HHHHHHCTTSHHHHHCCSEEEEECCHHHH
T ss_pred EEEEeccchHH------HHHHHHHHHHHHCCCcceEEEcCcch--------HHHHHhCCcchhhhcCCCEEEEEecHHHh
Confidence 89999999996 56666655542 223444444443 122222110 12389999998766555
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHH
Q 025869 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQC 157 (247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (247)
. +.. +.......+...+.+..+.+.++++. ++.||+.+.+.......... .. .........++++|..+
T Consensus 90 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vv~~~~~~p~~~~~g~~-----~~---~~~~~~~~~~~~~N~~l 158 (387)
T 3nvb_A 90 L-EKH-SLVNSDLQNKLADDRLDFVRLLCEQG-IGRVIYYNYPEIEDTIWGSY-----AT---KVQSSFTYQLTKLNYEL 158 (387)
T ss_dssp H-HHH-HTSCHHHHTTHHHHHHHHHHHHHHHC-CSEEEEECCCCCCCCSSGGG-----GG---GCTTSHHHHHHHHHHHH
T ss_pred c-ccc-cCChHHHHHHHHHHHHHHHHHHHhcc-CceEEEeCCCCCCccccccc-----hh---cccccHHHHHHHHHHHH
Confidence 2 110 00000001123445666667777664 66688777654332211110 00 11112334678999999
Q ss_pred HHHHHhc-CCCeeechHHHHhccc----ccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 158 IETAKDL-GVPFIDLWSKMQETEG----WQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 158 ~~~a~~~-~v~~vD~~~~~~~~~~----~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
.+.+.++ ++.++|+.......+. ....+..-+.+.+...-..+|+.+...+++.
T Consensus 159 ~~~~~~~~~~~~~D~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~a~~~~~~~~~l 217 (387)
T 3nvb_A 159 MNISQAYPNFFICNLAGISAKYGRNFMFDSSVYVNTEIILSLDALPIISSRTIDIIAAI 217 (387)
T ss_dssp HHHHHHCTTEEEECHHHHHHHHCHHHHCCHHHHHHHCCCSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCEEEeeHHHHHHHhCcccccCchHHHhccCCCCHHHHHHHHHHHHHHHHHH
Confidence 9998875 7889999877655321 1112233456778888888888888777766
No 31
>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase, 9-O-acetyl N-acetylneuraminic acid esterase, structural genomics; 1.60A {Escherichia coli O157}
Probab=93.42 E-value=0.16 Score=40.77 Aligned_cols=47 Identities=11% Similarity=-0.057 Sum_probs=33.7
Q ss_pred CcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC----------CCCeEEEEcCC
Q 025869 65 PVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS----------PIMLVVLITPP 120 (247)
Q Consensus 65 ~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~----------p~~~ivl~~~~ 120 (247)
..-|+..=|-.|.... ..++|.+.+..+|+.+|+.+ +..++|+....
T Consensus 183 IkGVLWyQGESN~~~~---------~~~~Y~~~f~~LI~~wR~d~~~~~~q~~~~~~lPFi~gqL~ 239 (337)
T 3pt5_A 183 FLGVCWMQGEFDLMTS---------DYASHPQHFNHMVEAFRRDLKQYHSQLNNITDAPWFCGDTT 239 (337)
T ss_dssp EEEEEEECCTGGGGST---------TGGGHHHHHHHHHHHHHHHHGGGGGGCC---CCCEEEECCC
T ss_pred eEEEEEecCCccccCc---------CHHHHHHHHHHHHHHHHHHHcccccccccCCCCCEEEEECc
Confidence 4556667788887531 24679999999999999854 36777777763
No 32
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=86.97 E-value=4.3 Score=27.86 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=47.1
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
..+|+++.|+-. ....+...+..++.+... .+...+...+.. . ..+|+|++.+...+..
T Consensus 4 ~~~ILivdd~~~--------~~~~l~~~L~~~~~v~~~----~~~~~a~~~l~~---~---~~~dlvi~D~~l~~~~--- 62 (151)
T 3kcn_A 4 NERILLVDDDYS--------LLNTLKRNLSFDFEVTTC----ESGPEALACIKK---S---DPFSVIMVDMRMPGME--- 62 (151)
T ss_dssp CCEEEEECSCHH--------HHHHHHHHHTTTSEEEEE----SSHHHHHHHHHH---S---CCCSEEEEESCCSSSC---
T ss_pred CCeEEEEeCCHH--------HHHHHHHHhccCceEEEe----CCHHHHHHHHHc---C---CCCCEEEEeCCCCCCc---
Confidence 458999998866 234555566544444421 123333333332 1 1259999965443321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
-.++++.+++..|..+|++++.
T Consensus 63 ----------------g~~~~~~l~~~~~~~~ii~~s~ 84 (151)
T 3kcn_A 63 ----------------GTEVIQKARLISPNSVYLMLTG 84 (151)
T ss_dssp ----------------HHHHHHHHHHHCSSCEEEEEEC
T ss_pred ----------------HHHHHHHHHhcCCCcEEEEEEC
Confidence 1256677777788888888876
No 33
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=83.87 E-value=7.9 Score=26.16 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=46.3
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc---ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC---RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~---~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
|..+|+++.|+-.. ...+...+. .++.+.....+ ... .+..+.. ..||+|++-+..-+.
T Consensus 1 m~~~ILivdd~~~~--------~~~l~~~L~~~~~~~~~~~~~~~---~~~---al~~~~~----~~~dlvllD~~lp~~ 62 (141)
T 3cu5_A 1 MSLRILIVDDEKLT--------RDGLIANINWKALSFDQIDQADD---GIN---AIQIALK----HPPNVLLTDVRMPRM 62 (141)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHCCGGGSCCSEEEEESS---HHH---HHHHHTT----SCCSEEEEESCCSSS
T ss_pred CcceEEEEeCCHHH--------HHHHHHHHHHccCCcEEeeeccc---HHH---HHHHHhc----CCCCEEEEeCCCCCC
Confidence 56789999998763 345555553 22333322222 222 2223332 268999995533222
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
. -.++++.+++..|.++|++++...
T Consensus 63 ~-------------------g~~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 63 D-------------------GIELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp C-------------------HHHHHHHHHHHCTTCEEEEECCST
T ss_pred C-------------------HHHHHHHHHhhCCCCcEEEEeCCC
Confidence 1 124566667777888888887653
No 34
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=82.41 E-value=6.3 Score=26.50 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=46.0
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+. .++.+.. .. +...... .+... +||+|++.+ ..+.
T Consensus 4 ~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~---~l~~~----~~dlvi~d~-~~~~--- 60 (142)
T 2qxy_A 4 TPTVMVVDESRIT--------FLAVKNALEKDGFNVIW-AK---NEQEAFT---FLRRE----KIDLVFVDV-FEGE--- 60 (142)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHGGGTCEEEE-ES---SHHHHHH---HHTTS----CCSEEEEEC-TTTH---
T ss_pred CCeEEEEeCCHHH--------HHHHHHHHHhCCCEEEE-EC---CHHHHHH---HHhcc----CCCEEEEeC-CCCC---
Confidence 4689999988763 334555553 2244431 11 2232223 33333 799999964 3221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.-.++++.+++..+.+++|+++..
T Consensus 61 ----------------~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 61 ----------------ESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp ----------------HHHHHHHHHHHHCTTCEEEEEESC
T ss_pred ----------------cHHHHHHHHHHHCCCCCEEEEECC
Confidence 123567777788888888888764
No 35
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=80.72 E-value=8.1 Score=25.53 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=44.9
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
+.+|+++.|+-.. ...+...+..++.+.... +...+...+. .. +||+|++.....+.
T Consensus 4 ~~~ilivdd~~~~--------~~~l~~~l~~~~~v~~~~----~~~~a~~~l~---~~----~~dlvi~d~~l~~~---- 60 (133)
T 3nhm_A 4 KPKVLIVENSWTM--------RETLRLLLSGEFDCTTAA----DGASGLQQAL---AH----PPDVLISDVNMDGM---- 60 (133)
T ss_dssp -CEEEEECSCHHH--------HHHHHHHHTTTSEEEEES----SHHHHHHHHH---HS----CCSEEEECSSCSSS----
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHhCCcEEEEEC----CHHHHHHHHh---cC----CCCEEEEeCCCCCC----
Confidence 4689999988763 344555555344443211 2233333332 22 69999995432221
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEcCCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPP 121 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~--~p~~~ivl~~~~p 121 (247)
+ -.++++.+++. .+.++|++++...
T Consensus 61 --------~-------g~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 61 --------D-------GYALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp --------C-------HHHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred --------C-------HHHHHHHHHhCCccCCCCEEEEeCCC
Confidence 1 12466667765 4577788887643
No 36
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=80.70 E-value=11 Score=25.64 Aligned_cols=84 Identities=11% Similarity=-0.025 Sum_probs=45.1
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
.+|+++.|+... ...+...+...-......... +...+ +..+.. .+||+|++.+...+..
T Consensus 21 ~~iLivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~-~~~~a---l~~l~~----~~~dlii~D~~l~~~~---- 80 (150)
T 4e7p_A 21 MKVLVAEDQSML--------RDAMCQLLTLQPDVESVLQAK-NGQEA---IQLLEK----ESVDIAILDVEMPVKT---- 80 (150)
T ss_dssp EEEEEECSCHHH--------HHHHHHHHHTSTTEEEEEEES-SHHHH---HHHHTT----SCCSEEEECSSCSSSC----
T ss_pred cEEEEEcCCHHH--------HHHHHHHHHhCCCcEEEEEEC-CHHHH---HHHhhc----cCCCEEEEeCCCCCCc----
Confidence 378888877662 345555553221222221111 22222 333333 3799999954332221
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++..|.++||+++...
T Consensus 81 ---------------g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 81 ---------------GLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp ---------------HHHHHHHHHHTTCSCEEEEEESCC
T ss_pred ---------------HHHHHHHHHHhCCCCeEEEEeCCC
Confidence 235677777778899899888743
No 37
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=79.74 E-value=8.8 Score=26.49 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=46.3
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+.. ++.+..... +...+...+..... +||+|++.+...+..
T Consensus 36 ~~~Ilivdd~~~~--------~~~l~~~L~~~g~~v~~~~~---~~~~al~~l~~~~~-----~~dliilD~~l~~~~-- 97 (157)
T 3hzh_A 36 PFNVLIVDDSVFT--------VKQLTQIFTSEGFNIIDTAA---DGEEAVIKYKNHYP-----NIDIVTLXITMPKMD-- 97 (157)
T ss_dssp ECEEEEECSCHHH--------HHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHHGG-----GCCEEEECSSCSSSC--
T ss_pred ceEEEEEeCCHHH--------HHHHHHHHHhCCCeEEEEEC---CHHHHHHHHHhcCC-----CCCEEEEeccCCCcc--
Confidence 3478888877662 3344444421 244432222 23333344444221 589999955433321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
-.++++.+++..+.++||+++..
T Consensus 98 -----------------g~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 98 -----------------GITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp -----------------HHHHHHHHHHHCTTCCEEEEESC
T ss_pred -----------------HHHHHHHHHhhCCCCcEEEEecc
Confidence 12567777888888889888763
No 38
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=79.60 E-value=4.9 Score=27.11 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=45.7
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|+++|+++.|+-. +...+...+.. ++.+. ... +...+...+.. . +||+|++.+..-+..
T Consensus 3 m~~~ILivdd~~~--------~~~~l~~~L~~~g~~v~-~~~---~~~~a~~~l~~---~----~~dlvllD~~l~~~~- 62 (137)
T 3cfy_A 3 LRPRVLLVEDSTS--------LAILYKQYVKDEPYDIF-HVE---TGRDAIQFIER---S----KPQLIILDLKLPDMS- 62 (137)
T ss_dssp CCCEEEEECSCTT--------HHHHHHHHTTTSSSEEE-EES---SHHHHHHHHHH---H----CCSEEEECSBCSSSB-
T ss_pred ccceEEEEeCCHH--------HHHHHHHHHHhcCceEE-EeC---CHHHHHHHHHh---c----CCCEEEEecCCCCCC-
Confidence 4568999999876 34455665542 24332 111 22333333332 2 689999944322211
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
-.++++.+++..+.++|++++..
T Consensus 63 ------------------g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 63 ------------------GEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp ------------------HHHHHHHHHHTTCCCEEEEEESS
T ss_pred ------------------HHHHHHHHHhcCCCCCEEEEEec
Confidence 12456677777778888888763
No 39
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=77.78 E-value=12 Score=25.06 Aligned_cols=82 Identities=5% Similarity=-0.041 Sum_probs=45.8
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc--cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc-ccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN-DAA 78 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N-D~~ 78 (247)
+.+|+++.|+-.. ...+...+.. ++.+. ...+ .. +.+..+.. ..+||+|++.+... +.
T Consensus 4 ~~~ilivdd~~~~--------~~~l~~~L~~~~~~~v~-~~~~---~~---~a~~~l~~---~~~~dlvi~D~~l~~~~- 64 (140)
T 3lua_A 4 DGTVLLIDYFEYE--------REKTKIIFDNIGEYDFI-EVEN---LK---KFYSIFKD---LDSITLIIMDIAFPVEK- 64 (140)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHHCCCEEE-EECS---HH---HHHTTTTT---CCCCSEEEECSCSSSHH-
T ss_pred CCeEEEEeCCHHH--------HHHHHHHHHhccCccEE-EECC---HH---HHHHHHhc---CCCCcEEEEeCCCCCCC-
Confidence 4589999988763 2344444432 34444 2222 22 23333333 04899999943222 11
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCeEEEEcCC
Q 025869 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPP 120 (247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~~~ivl~~~~ 120 (247)
.-.++++.+++ ..+.++||+++..
T Consensus 65 ------------------~g~~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 65 ------------------EGLEVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp ------------------HHHHHHHHHHHSGGGTTCCEEEEESC
T ss_pred ------------------cHHHHHHHHHhCcccCCCCEEEEeCC
Confidence 12356777777 6778889988763
No 40
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=76.49 E-value=14 Score=24.54 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=47.1
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcc--ccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAND--AAL 79 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND--~~~ 79 (247)
.+|+++.|+-.. ...+...+.. ++.+.... +.. +.+..+.. .+||+|++.+...| .
T Consensus 7 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~~----~~~---~a~~~l~~----~~~dlvi~D~~l~~~~~-- 65 (136)
T 3kto_A 7 PIIYLVDHQKDA--------RAALSKLLSPLDVTIQCFA----SAE---SFMRQQIS----DDAIGMIIEAHLEDKKD-- 65 (136)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHTTSSSEEEEES----SHH---HHTTSCCC----TTEEEEEEETTGGGBTT--
T ss_pred CeEEEEcCCHHH--------HHHHHHHHHHCCcEEEEeC----CHH---HHHHHHhc----cCCCEEEEeCcCCCCCc--
Confidence 589999887763 3455555542 34443211 112 23333332 47999999654333 2
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.-.++++.+++..+.++||+++...
T Consensus 66 -----------------~g~~~~~~l~~~~~~~~ii~~s~~~ 90 (136)
T 3kto_A 66 -----------------SGIELLETLVKRGFHLPTIVMASSS 90 (136)
T ss_dssp -----------------HHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred -----------------cHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 1235777888888888899887743
No 41
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=76.28 E-value=10 Score=25.95 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=46.5
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+++|+++.|+-.. ...+...+.. ++.+... . +...+...+.. . +||+|++.+...+..
T Consensus 14 ~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~a~~~l~~---~----~~dlvi~D~~l~~~~-- 72 (153)
T 3hv2_A 14 RPEILLVDSQEVI--------LQRLQQLLSPLPYTLHFA-R---DATQALQLLAS---R----EVDLVISAAHLPQMD-- 72 (153)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHTTSSCEEEEE-S---SHHHHHHHHHH---S----CCSEEEEESCCSSSC--
T ss_pred CceEEEECCCHHH--------HHHHHHHhcccCcEEEEE-C---CHHHHHHHHHc---C----CCCEEEEeCCCCcCc--
Confidence 3578888887662 3455555542 2333311 1 23333333322 2 699999965433321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++..+.++||+++...
T Consensus 73 -----------------g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 73 -----------------GPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp -----------------HHHHHHHHHHHCTTSEEEEECCCC
T ss_pred -----------------HHHHHHHHHhHCCCCeEEEEECCC
Confidence 125666777778888899888743
No 42
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=75.42 E-value=6.9 Score=25.56 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|+.+|+++.|+-.. ...+...+.. ++.+. ... +.......+.. . +||++++-+...+..
T Consensus 2 m~~~ilivdd~~~~--------~~~l~~~l~~~~~~v~-~~~---~~~~a~~~~~~---~----~~dlvl~D~~l~~~~- 61 (124)
T 1srr_A 2 MNEKILIVDDQSGI--------RILLNEVFNKEGYQTF-QAA---NGLQALDIVTK---E----RPDLVLLDMKIPGMD- 61 (124)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHTTTCEEE-EES---SHHHHHHHHHH---H----CCSEEEEESCCTTCC-
T ss_pred CCceEEEEeCCHHH--------HHHHHHHHHHCCcEEE-EeC---CHHHHHHHHhc---c----CCCEEEEecCCCCCC-
Confidence 45689999988763 3344444432 24433 211 22333333322 2 689999954332211
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
-.++++.+++..|.+++++++..
T Consensus 62 ------------------g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 62 ------------------GIEILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp ------------------HHHHHHHHHHHCTTCEEEEEESS
T ss_pred ------------------HHHHHHHHHHhCCCCCEEEEEcc
Confidence 12456667777778888888763
No 43
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=75.27 E-value=17 Score=24.72 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=26.9
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
+||+|++.+...+.. -.++++.+++..|.++||+++...
T Consensus 61 ~~dlii~d~~l~~~~-------------------g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 61 LPDVALLDYRMPGMD-------------------GAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp CCSEEEEETTCSSSC-------------------HHHHHHHHHHTTCSCEEEEEESCC
T ss_pred CCCEEEEeCCCCCCC-------------------HHHHHHHHHhcCCCCeEEEEEccC
Confidence 689999965433321 235677788888888888887743
No 44
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=74.77 E-value=15 Score=24.08 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=44.4
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
+.+|+++.|+-.. ...+...+..........- +.. ........ . ||+|++.+...+.
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~L~~~~~~v~~~~---~~~----~~~~~~~~---~-~dlvi~D~~l~~~---- 59 (135)
T 3eqz_A 3 LNRVFIVDDDTLT--------CNLLKTIVEPIFGNVEAFQ---HPR----AFLTLSLN---K-QDIIILDLMMPDM---- 59 (135)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHTTTCSCEEEES---CHH----HHTTSCCC---T-TEEEEEECCTTTT----
T ss_pred cceEEEEeCCHHH--------HHHHHHHHHhhcceeeeec---CHH----HHHHhhcc---C-CCEEEEeCCCCCC----
Confidence 4589999887763 3455555542211111111 111 12223332 3 9999996533332
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.-.++++.+++..+..++++++.
T Consensus 60 ---------------~g~~~~~~l~~~~~~~~ii~~s~ 82 (135)
T 3eqz_A 60 ---------------DGIEVIRHLAEHKSPASLILISG 82 (135)
T ss_dssp ---------------HHHHHHHHHHHTTCCCEEEEEES
T ss_pred ---------------CHHHHHHHHHhCCCCCCEEEEEe
Confidence 12356778888888888888876
No 45
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=73.80 E-value=9.8 Score=25.02 Aligned_cols=81 Identities=15% Similarity=0.075 Sum_probs=43.7
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++.|+-.. ...+...+.. ++.+.. . .+...+.. .+.. .+||+|++.+...+..
T Consensus 8 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~a~~---~l~~----~~~dlvi~d~~l~~~~--- 65 (130)
T 3eod_A 8 KQILIVEDEQVF--------RSLLDSWFSSLGATTVL-A---ADGVDALE---LLGG----FTPDLMICDIAMPRMN--- 65 (130)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-E---SCHHHHHH---HHTT----CCCSEEEECCC--------
T ss_pred CeEEEEeCCHHH--------HHHHHHHHHhCCceEEE-e---CCHHHHHH---HHhc----CCCCEEEEecCCCCCC---
Confidence 489999887763 2334443321 244432 1 12333333 3333 3799999954322211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++..|.+++++++...
T Consensus 66 ----------------g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 66 ----------------GLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp ----------------CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred ----------------HHHHHHHHHhcCCCCCEEEEEcCC
Confidence 125667777788888888887743
No 46
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=72.92 E-value=13 Score=24.59 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=44.8
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhccc-CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRK-ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~-~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++.|+-.. ...+...+... +.+.... +...+...+.. . +||+|++.+...|..
T Consensus 8 ~~ilivdd~~~~--------~~~l~~~L~~~~~~v~~~~----~~~~a~~~l~~---~----~~dlvi~d~~l~~~~--- 65 (137)
T 3hdg_A 8 LKILIVEDDTDA--------REWLSTIISNHFPEVWSAG----DGEEGERLFGL---H----APDVIITDIRMPKLG--- 65 (137)
T ss_dssp CCEEEECSCHHH--------HHHHHHHHHTTCSCEEEES----SHHHHHHHHHH---H----CCSEEEECSSCSSSC---
T ss_pred cEEEEEeCCHHH--------HHHHHHHHHhcCcEEEEEC----CHHHHHHHHhc---c----CCCEEEEeCCCCCCC---
Confidence 378888887663 33444444321 2222111 22333333322 2 689999955433321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++..+.++|++++...
T Consensus 66 ----------------g~~~~~~l~~~~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 66 ----------------GLEMLDRIKAGGAKPYVIVISAFS 89 (137)
T ss_dssp ----------------HHHHHHHHHHTTCCCEEEECCCCC
T ss_pred ----------------HHHHHHHHHhcCCCCcEEEEecCc
Confidence 125677778888888888887643
No 47
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=72.52 E-value=8.4 Score=25.57 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=45.1
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|..+|+++.|+-.. ...+...+. .++.+.. .. +.......+.. . .||+|++.+...+..
T Consensus 2 m~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~~~~~---~----~~dlvl~D~~l~~~~- 61 (136)
T 1mvo_A 2 MNKKILVVDDEESI--------VTLLQYNLERSGYDVIT-AS---DGEEALKKAET---E----KPDLIVLDVMLPKLD- 61 (136)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHHHHHH---H----CCSEEEEESSCSSSC-
T ss_pred CCCEEEEEECCHHH--------HHHHHHHHHHCCcEEEE-ec---CHHHHHHHHhh---c----CCCEEEEecCCCCCC-
Confidence 66789999998763 233444332 1243331 11 22333333322 2 689999954332221
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++..+..++++++...
T Consensus 62 ------------------g~~~~~~l~~~~~~~~ii~~s~~~ 85 (136)
T 1mvo_A 62 ------------------GIEVCKQLRQQKLMFPILMLTAKD 85 (136)
T ss_dssp ------------------HHHHHHHHHHTTCCCCEEEEECTT
T ss_pred ------------------HHHHHHHHHcCCCCCCEEEEECCC
Confidence 124667777777778888887643
No 48
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=72.09 E-value=19 Score=24.00 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=46.5
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+. .++.+.. . .+...+...+... ..+||+|++.+...+..
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~l~~~g~~v~~-~---~~~~~a~~~~~~~-----~~~~dlvi~d~~l~~~~-- 63 (143)
T 3jte_A 3 LAKILVIDDESTI--------LQNIKFLLEIDGNEVLT-A---SSSTEGLRIFTEN-----CNSIDVVITDMKMPKLS-- 63 (143)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-E---SSHHHHHHHHHHT-----TTTCCEEEEESCCSSSC--
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHHhCCceEEE-e---CCHHHHHHHHHhC-----CCCCCEEEEeCCCCCCc--
Confidence 3489999988663 234444443 1233331 1 1233333333321 13799999965433321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-..+++.+++..|.++|++++...
T Consensus 64 -----------------g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 64 -----------------GMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp -----------------HHHHHHHHHHHCTTCEEEEEECTT
T ss_pred -----------------HHHHHHHHHHhCCCCeEEEEECCC
Confidence 125667777778888898887743
No 49
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=71.97 E-value=14 Score=25.18 Aligned_cols=80 Identities=13% Similarity=0.048 Sum_probs=43.9
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+++|+++.|+-.. ...+...+. .++.+... . +... .+..+.. ..||+|++.+...+..
T Consensus 3 ~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~~-~---~~~~---a~~~l~~----~~~dliild~~l~~~~-- 61 (155)
T 1qkk_A 3 APSVFLIDDDRDL--------RKAMQQTLELAGFTVSSF-A---SATE---ALAGLSA----DFAGIVISDIRMPGMD-- 61 (155)
T ss_dssp -CEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE-S---CHHH---HHHTCCT----TCCSEEEEESCCSSSC--
T ss_pred CCEEEEEeCCHHH--------HHHHHHHHHHcCcEEEEE-C---CHHH---HHHHHHh----CCCCEEEEeCCCCCCC--
Confidence 4689999988763 233344432 22444321 1 2222 2333332 3799999965433321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
-..+++.+++..|.++||+++.
T Consensus 62 -----------------g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 62 -----------------GLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp -----------------HHHHHHHHHHHCTTSCEEEEEC
T ss_pred -----------------HHHHHHHHHhhCCCCCEEEEEC
Confidence 1256667777778888888876
No 50
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=71.85 E-value=17 Score=23.31 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=45.2
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|..+|+++.|+... ...+...+. .++.+.....+ .......+.. . +||++++-+..-+..
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~l~~~g~~vv~~~~~---~~~a~~~~~~---~----~~dlil~D~~l~~~~- 61 (120)
T 1tmy_A 1 MGKRVLIVDDAAFM--------RMMLKDIITKAGYEVAGEATN---GREAVEKYKE---L----KPDIVTMDITMPEMN- 61 (120)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEEESS---HHHHHHHHHH---H----CCSEEEEECSCGGGC-
T ss_pred CCceEEEEcCcHHH--------HHHHHHHHhhcCcEEEEEECC---HHHHHHHHHh---c----CCCEEEEeCCCCCCc-
Confidence 67789999988663 234444443 22443222222 2333333322 2 689999954332221
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
-.++++.+++..|..++++++..
T Consensus 62 ------------------g~~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 62 ------------------GIDAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp ------------------HHHHHHHHHHHCTTCCEEEEECT
T ss_pred ------------------HHHHHHHHHhhCCCCeEEEEeCC
Confidence 12456677777778888888763
No 51
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=71.67 E-value=4.5 Score=29.30 Aligned_cols=67 Identities=7% Similarity=-0.108 Sum_probs=44.3
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
|--|+.+||.+. .|.-...-...|.+.+. .++++...++-+.......+.+.+... +.|+||...|+
T Consensus 5 ~v~IistGdEll-~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~-----~~DlVittGG~ 72 (172)
T 3kbq_A 5 NASVITVGNEIL-KGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALE-----VSDLVVSSGGL 72 (172)
T ss_dssp EEEEEEECHHHH-TTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHH-----HCSEEEEESCC
T ss_pred EEEEEEEccccc-CCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh-----cCCEEEEcCCC
Confidence 446899999998 45333333444555542 337788888888777766666666554 47999988765
No 52
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=70.51 E-value=19 Score=24.41 Aligned_cols=80 Identities=10% Similarity=0.000 Sum_probs=45.0
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++.|+-.. ...+...+. .++.+.. .. +...+ +..+... .||+|++.+...+..
T Consensus 8 ~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a---~~~l~~~----~~dlvi~d~~l~~~~--- 65 (154)
T 2rjn_A 8 YTVMLVDDEQPI--------LNSLKRLIKRLGCNIIT-FT---SPLDA---LEALKGT----SVQLVISDMRMPEMG--- 65 (154)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHTTTCEEEE-ES---CHHHH---HHHHTTS----CCSEEEEESSCSSSC---
T ss_pred CeEEEEcCCHHH--------HHHHHHHHHHcCCeEEE-eC---CHHHH---HHHHhcC----CCCEEEEecCCCCCC---
Confidence 378999888763 334444443 2244431 11 22322 2333333 699999965433321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
-..+++.+++..|.++||+++..
T Consensus 66 ----------------g~~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 66 ----------------GEVFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp ----------------HHHHHHHHHHHCTTSEEEEEECG
T ss_pred ----------------HHHHHHHHHHhCCCCcEEEEecC
Confidence 12566777777788888888763
No 53
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=69.67 E-value=5.4 Score=28.59 Aligned_cols=65 Identities=5% Similarity=-0.135 Sum_probs=40.7
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+..||.+. .|.-..+-...|...+. .++++...++-... ....+.+.+.... +.|+||...|+
T Consensus 11 ~ii~tGdEl~-~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~----~~DlVittGG~ 76 (164)
T 3pzy_A 11 RVIIASTRAS-SGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDD----DVDVILTSGGT 76 (164)
T ss_dssp EEEEECHHHH-C----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHT----TCSEEEEESCC
T ss_pred EEEEECCCCC-CCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhC----CCCEEEECCCC
Confidence 5889999998 44333344445555553 23667777777777 7666666665532 68999988765
No 54
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=69.50 E-value=12 Score=24.86 Aligned_cols=84 Identities=15% Similarity=0.041 Sum_probs=43.9
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++.|+-.. ...+...+.. ++.+... .+.......+.. . .||+|++.+...+.....
T Consensus 4 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~l~~---~----~~dlvi~d~~~~~~~~~~ 64 (140)
T 2qr3_A 4 GTIIIVDDNKGV--------LTAVQLLLKNHFSKVITL----SSPVSLSTVLRE---E----NPEVVLLDMNFTSGINNG 64 (140)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHTTTSSEEEEE----CCHHHHHHHHHH---S----CEEEEEEETTTTC-----
T ss_pred ceEEEEeCCHHH--------HHHHHHHHHhCCcEEEEe----CCHHHHHHHHHc---C----CCCEEEEeCCcCCCCCCC
Confidence 489999888662 3445555532 2433311 122333333322 2 689999965432000000
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.+ -.++++.+++..+.++||+++.
T Consensus 65 -------~~-------g~~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 65 -------NE-------GLFWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp -------CC-------HHHHHHHHHHHCTTCCEEEEEE
T ss_pred -------cc-------HHHHHHHHHhhCcCCCEEEEEC
Confidence 01 1255666777778888888876
No 55
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=68.93 E-value=17 Score=23.96 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=44.8
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+++|+++.|+-.. ...+...+.. ++.+... .+.......+.. . ..||+|++.+...+..
T Consensus 7 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~~~~---~---~~~dlvi~D~~l~~~~-- 66 (136)
T 3hdv_A 7 RPLVLVVDDNAVN--------REALILYLKSRGIDAVGA----DGAEEARLYLHY---Q---KRIGLMITDLRMQPES-- 66 (136)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCCEEEE----SSHHHHHHHHHH---C---TTEEEEEECSCCSSSC--
T ss_pred CCeEEEECCCHHH--------HHHHHHHHHHcCceEEEe----CCHHHHHHHHHh---C---CCCcEEEEeccCCCCC--
Confidence 4589999988763 2334444421 3444432 122333333322 1 2489999954332221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHh-CCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRL-SPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~p~~~ivl~~~~ 120 (247)
-.++++.+++. .+.++|++++..
T Consensus 67 -----------------g~~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 67 -----------------GLDLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp -----------------HHHHHHHHHTSTTTTCEEEEEESS
T ss_pred -----------------HHHHHHHHHhcCCCCCCEEEEeCC
Confidence 12567777776 678888888764
No 56
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=68.78 E-value=15 Score=23.93 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=42.9
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|..+|+++.|+-.. ...+...+. .++.+.. .. +...+.+ .+.. .+||+|++-+..-+.
T Consensus 1 m~~~ILivdd~~~~--------~~~l~~~l~~~g~~v~~-~~---~~~~al~---~l~~----~~~dlvllD~~~p~~-- 59 (122)
T 3gl9_A 1 MSKKVLLVDDSAVL--------RKIVSFNLKKEGYEVIE-AE---NGQIALE---KLSE----FTPDLIVLXIMMPVM-- 59 (122)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHH---HHTT----BCCSEEEECSCCSSS--
T ss_pred CCceEEEEeCCHHH--------HHHHHHHHHHCCcEEEE-eC---CHHHHHH---HHHh----cCCCEEEEeccCCCC--
Confidence 67799999998763 233444432 2244442 22 2232333 3332 379999994322221
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEcCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPP 120 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~p~~~ivl~~~~ 120 (247)
+ --++++.+++. .+.+++++++..
T Consensus 60 ----------~-------g~~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 60 ----------D-------GFTVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp ----------C-------HHHHHHHHHTSTTTTTSCEEEEESC
T ss_pred ----------c-------HHHHHHHHHhcccccCCCEEEEecC
Confidence 1 12456666654 357778888763
No 57
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=68.69 E-value=14 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+||+|++.+..-|... .++++.+++..+.+++++++..
T Consensus 58 ~~~dlvi~D~~l~~~~g-------------------~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 58 TRPGIVILDLGGGDLLG-------------------KPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp CCCSEEEEEEETTGGGG-------------------STTHHHHHGGGTTCCEEEEESC
T ss_pred cCCCEEEEeCCCCCchH-------------------HHHHHHHHhhCCCCcEEEEeCC
Confidence 47999999654333210 1456677777778888888773
No 58
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=68.65 E-value=12 Score=24.38 Aligned_cols=81 Identities=14% Similarity=0.024 Sum_probs=45.3
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++.|+-.. ...+...+.. ++.+... .+...+.+.+.+ . +||+|++.+...+..
T Consensus 4 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~l~~---~----~~dlii~D~~l~~~~--- 61 (127)
T 3i42_A 4 QQALIVEDYQAA--------AETFKELLEMLGFQADYV----MSGTDALHAMST---R----GYDAVFIDLNLPDTS--- 61 (127)
T ss_dssp EEEEEECSCHHH--------HHHHHHHHHHTTEEEEEE----SSHHHHHHHHHH---S----CCSEEEEESBCSSSB---
T ss_pred ceEEEEcCCHHH--------HHHHHHHHHHcCCCEEEE----CCHHHHHHHHHh---c----CCCEEEEeCCCCCCC---
Confidence 489999988763 2344444432 2333221 123333333322 2 699999965433321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEcCCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPPP 121 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~--~p~~~ivl~~~~p 121 (247)
-.++++.+++. .+.+++++++...
T Consensus 62 ----------------g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 62 ----------------GLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp ----------------HHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred ----------------HHHHHHHHHhhhccCCCCEEEEECCc
Confidence 12567777777 6788888887754
No 59
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=68.19 E-value=24 Score=23.61 Aligned_cols=38 Identities=24% Similarity=0.152 Sum_probs=26.0
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.||+|++.+...|. .-..+++.+++..|.++||+++..
T Consensus 67 ~~dlvi~D~~l~~~-------------------~g~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 67 AFDILMIDGAALDT-------------------AELAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp TCSEEEEECTTCCH-------------------HHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCCEEEEeCCCCCc-------------------cHHHHHHHHHHhCCCCcEEEEeCC
Confidence 79999995433221 123567777888888888888774
No 60
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=67.97 E-value=13 Score=24.20 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=42.4
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|..+|+++.|+... ...+...+. .++.+.. .. +.. +.+..+.. .+||++++.+..-+..
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~l~~~g~~v~~-~~---~~~---~a~~~~~~----~~~dlvi~D~~l~~~~- 60 (127)
T 2jba_A 1 MARRILVVEDEAPI--------REMVCFVLEQNGFQPVE-AE---DYD---SAVNQLNE----PWPDLILLAWMLPGGS- 60 (127)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-EC---SHH---HHHTTCSS----SCCSEEEEESEETTEE-
T ss_pred CCcEEEEEcCCHHH--------HHHHHHHHHHCCceEEE-eC---CHH---HHHHHHhc----cCCCEEEEecCCCCCC-
Confidence 66789999998763 223333332 1233331 11 122 22333322 3799999854322211
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEcC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITP 119 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~ 119 (247)
-.++++.+++.. +.+++++++.
T Consensus 61 ------------------g~~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 61 ------------------GIQFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp ------------------HHHHHHHHHTSTTTTTSCEEEEEE
T ss_pred ------------------HHHHHHHHHhCcccCCCCEEEEeC
Confidence 114666777654 6777888865
No 61
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=67.67 E-value=16 Score=24.44 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=25.1
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCeEEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~~~ivl~~~~ 120 (247)
+||+|++.+...+.. -.++++.+++ ..+.++||+++..
T Consensus 51 ~~dlii~D~~l~~~~-------------------g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 51 KYDLIILDIGLPIAN-------------------GFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp CCSEEEECTTCGGGC-------------------HHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred CCCEEEEeCCCCCCC-------------------HHHHHHHHHhcccccCCCEEEEeCC
Confidence 799999954332221 2356777777 5678888888763
No 62
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=67.56 E-value=20 Score=23.85 Aligned_cols=82 Identities=7% Similarity=-0.015 Sum_probs=44.7
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+.. ++.+... .+...+.+. +... .+|+|++.+...+..
T Consensus 7 ~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a~~~---l~~~----~~dlii~d~~l~~~~-- 65 (142)
T 3cg4_A 7 KGDVMIVDDDAHV--------RIAVKTILSDAGFHIISA----DSGGQCIDL---LKKG----FSGVVLLDIMMPGMD-- 65 (142)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEEE----SSHHHHHHH---HHTC----CCEEEEEESCCSSSC--
T ss_pred CCeEEEEcCCHHH--------HHHHHHHHHHCCeEEEEe----CCHHHHHHH---HHhc----CCCEEEEeCCCCCCC--
Confidence 4589999888663 2344444431 2433211 122323232 3323 689999965433221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCeEEEEcCCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPPP 121 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~~~ivl~~~~p 121 (247)
-.++++.+++ ..+.++||+++...
T Consensus 66 -----------------g~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 66 -----------------GWDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp -----------------HHHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred -----------------HHHHHHHHHhhcccCCCCEEEEECCC
Confidence 1256777777 66788888887653
No 63
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=67.33 E-value=13 Score=25.25 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.+++.+++..|.++||+++...
T Consensus 67 ~~~~~l~~~~~~~~ii~ls~~~ 88 (154)
T 2qsj_A 67 DGLVRLKRFDPSNAVALISGET 88 (154)
T ss_dssp HHHHHHHHHCTTSEEEEC----
T ss_pred HHHHHHHHhCCCCeEEEEeCCC
Confidence 5667777778888888887643
No 64
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=66.64 E-value=16 Score=24.49 Aligned_cols=82 Identities=15% Similarity=0.034 Sum_probs=44.6
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
+.+|+++.|+-... ..+...|.. . ++.+.. .. +...+...+.. . .||+|++.+...+..
T Consensus 8 ~~~iLivd~~~~~~----~~l~~~L~~-~--g~~v~~-~~---~~~~a~~~l~~---~----~~dlii~d~~l~~~~--- 66 (147)
T 2zay_A 8 WWRIMLVDTQLPAL----AASISALSQ-E--GFDIIQ-CG---NAIEAVPVAVK---T----HPHLIITEANMPKIS--- 66 (147)
T ss_dssp CEEEEEECTTGGGG----HHHHHHHHH-H--TEEEEE-ES---SHHHHHHHHHH---H----CCSEEEEESCCSSSC---
T ss_pred CceEEEEeCCHHHH----HHHHHHHHH-c--CCeEEE-eC---CHHHHHHHHHc---C----CCCEEEEcCCCCCCC---
Confidence 45899999887631 123333332 2 244431 11 22333333332 2 689999965433321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCeEEEEcCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPP 120 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~~~ivl~~~~ 120 (247)
-.++++.+++ ..+.++||+++..
T Consensus 67 ----------------g~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 67 ----------------GMDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp ----------------HHHHHHHHHTSTTTTTSCEEEEESS
T ss_pred ----------------HHHHHHHHHcCcccCCCCEEEEeCC
Confidence 1256777777 5678888888764
No 65
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=66.62 E-value=9.1 Score=28.08 Aligned_cols=67 Identities=10% Similarity=-0.096 Sum_probs=44.4
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcc----cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCR----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~----~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
.|+.+||.+.. |.....-...|.+.+.. ++++...++.+.......+.+.+.... .+.|+||+..|+
T Consensus 18 ~IistGdEl~~-g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~---~~~DlVIttGGt 88 (189)
T 1jlj_A 18 GVLTVSDSCFR-NLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDE---KELNLILTTGGT 88 (189)
T ss_dssp EEEEECHHHHT-TSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHT---SCCSEEEEESCC
T ss_pred EEEEECCccCC-CcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhc---CCCCEEEEcCCC
Confidence 58899999984 43333444556666642 467777788887777666666665531 258999888766
No 66
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=66.32 E-value=23 Score=25.15 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=44.7
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+.. ++.+. ... +...+ +..+.. .+||+|++-+..-|..
T Consensus 7 ~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~-~~~---~~~~a---l~~~~~----~~~dlvl~D~~lp~~~-- 65 (184)
T 3rqi_A 7 DKNFLVIDDNEVF--------AGTLARGLERRGYAVR-QAH---NKDEA---LKLAGA----EKFEFITVXLHLGNDS-- 65 (184)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEE-EEC---SHHHH---HHHHTT----SCCSEEEECSEETTEE--
T ss_pred CCeEEEEcCCHHH--------HHHHHHHHHHCCCEEE-EeC---CHHHH---HHHHhh----CCCCEEEEeccCCCcc--
Confidence 3589999988763 2334444421 24332 111 22222 233333 3799999944322211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
--++++.+++..|.++||+++...
T Consensus 66 -----------------g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 66 -----------------GLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp -----------------SHHHHHHHHHHCTTCEEEEEESSC
T ss_pred -----------------HHHHHHHHHhcCCCCCEEEEeCCC
Confidence 114666777778888899888754
No 67
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=66.18 E-value=34 Score=24.60 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=46.0
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+++|+++.|.... ...+...+. .++.+.. .. +... .+..+.. .+||+|++-+..-|..
T Consensus 4 ~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~---al~~~~~----~~~dlvl~D~~lp~~~-- 62 (208)
T 1yio_A 4 KPTVFVVDDDMSV--------REGLRNLLRSAGFEVET-FD---CAST---FLEHRRP----EQHGCLVLDMRMPGMS-- 62 (208)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHTTTCEEEE-ES---SHHH---HHHHCCT----TSCEEEEEESCCSSSC--
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHHhCCceEEE-cC---CHHH---HHHhhhc----cCCCEEEEeCCCCCCC--
Confidence 4689999988763 234444443 2344432 11 2222 2233332 3799999954332211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
--++++.+++..|.++|++++...
T Consensus 63 -----------------g~~~~~~l~~~~~~~~ii~ls~~~ 86 (208)
T 1yio_A 63 -----------------GIELQEQLTAISDGIPIVFITAHG 86 (208)
T ss_dssp -----------------HHHHHHHHHHTTCCCCEEEEESCT
T ss_pred -----------------HHHHHHHHHhcCCCCCEEEEeCCC
Confidence 125677777777888898887754
No 68
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=65.34 E-value=14 Score=24.62 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=44.2
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
.+|+++.|+-.. ...+...+...+.+.. .. +...+...+.. . +||+|++.+...+..
T Consensus 4 ~~iLivdd~~~~--------~~~l~~~l~~~~~v~~-~~---~~~~a~~~~~~---~----~~dlvi~D~~l~~~~---- 60 (140)
T 3n53_A 4 KKILIIDQQDFS--------RIELKNFLDSEYLVIE-SK---NEKEALEQIDH---H----HPDLVILDMDIIGEN---- 60 (140)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHTTTSEEEE-ES---SHHHHHHHHHH---H----CCSEEEEETTC--------
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHhcceEEE-eC---CHHHHHHHHhc---C----CCCEEEEeCCCCCCc----
Confidence 589999887763 3455566643333321 11 23333333332 2 689999965433321
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEcCCC
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPP 121 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~~p 121 (247)
-..+++.+++.. +.+++|+++...
T Consensus 61 ---------------g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 61 ---------------SPNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp -----------------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred ---------------HHHHHHHHHcCcccCCCCEEEEecCC
Confidence 124566777765 788888887643
No 69
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=63.76 E-value=31 Score=23.29 Aligned_cols=81 Identities=11% Similarity=0.025 Sum_probs=44.5
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc--cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
.+|+++.|+-. ....+...+.. ++.+..... +...+.. .+... .||+|++.+...+..
T Consensus 6 ~~ILivdd~~~--------~~~~l~~~L~~~~~~~v~~~~~---~~~~a~~---~l~~~----~~dlii~D~~l~~~~-- 65 (153)
T 3cz5_A 6 ARIMLVDDHPI--------VREGYRRLIERRPGYAVVAEAA---DAGEAYR---LYRET----TPDIVVMDLTLPGPG-- 65 (153)
T ss_dssp EEEEEECSCHH--------HHHHHHHHHTTSTTEEEEEEES---SHHHHHH---HHHTT----CCSEEEECSCCSSSC--
T ss_pred cEEEEECCcHH--------HHHHHHHHHhhCCCcEEEEEeC---CHHHHHH---HHhcC----CCCEEEEecCCCCCC--
Confidence 37888888766 23455555543 233321111 2222222 23333 699999954322211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
-.++++.+++..|.++|++++..
T Consensus 66 -----------------g~~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 66 -----------------GIEATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp -----------------HHHHHHHHHHHCTTCCEEEEESC
T ss_pred -----------------HHHHHHHHHHhCCCCeEEEEECC
Confidence 12567777777788888888763
No 70
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=63.75 E-value=27 Score=22.60 Aligned_cols=81 Identities=12% Similarity=-0.020 Sum_probs=43.4
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+. .++.+.. . .+...... .+... +||++++-+...+..
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~l~~~~~~v~~-~---~~~~~~~~---~~~~~----~~dlvi~D~~l~~~~-- 61 (126)
T 1dbw_A 3 DYTVHIVDDEEPV--------RKSLAFMLTMNGFAVKM-H---QSAEAFLA---FAPDV----RNGVLVTDLRMPDMS-- 61 (126)
T ss_dssp CCEEEEEESSHHH--------HHHHHHHHHHTTCEEEE-E---SCHHHHHH---HGGGC----CSEEEEEECCSTTSC--
T ss_pred CCEEEEEcCCHHH--------HHHHHHHHHhCCcEEEE-e---CCHHHHHH---HHhcC----CCCEEEEECCCCCCC--
Confidence 3489999988763 233334332 1243332 1 12233323 22222 689999954332221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
-.++++.+++..|..++++++..
T Consensus 62 -----------------g~~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 62 -----------------GVELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp -----------------HHHHHHHHHHTTCCCCEEEEECT
T ss_pred -----------------HHHHHHHHHhcCCCCCEEEEECC
Confidence 12456677777778888888763
No 71
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=63.59 E-value=8 Score=27.68 Aligned_cols=66 Identities=8% Similarity=-0.096 Sum_probs=43.2
Q ss_pred eEEEEcccccccccCCCcHHHHHHHH----hc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADA----YC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~----~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+.+||.+. .|.-...-...|.+. +. .++++...++-+.......+.+.+.... +.|+||...|+
T Consensus 9 ~Ii~~GdEl~-~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~----~~DlVittGG~ 79 (167)
T 2g2c_A 9 AIIVVSDRIS-TGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQ----GARFIITAGGT 79 (167)
T ss_dssp EEEEECHHHH-HTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHT----TCSEEEEESCC
T ss_pred EEEEECCccc-CCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhC----CCCEEEECCCC
Confidence 5889999998 453333444556666 53 2366777777777777666666666543 48999988766
No 72
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=63.08 E-value=22 Score=25.33 Aligned_cols=65 Identities=11% Similarity=-0.083 Sum_probs=41.3
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+.+||.+ |.-...-...|.+.+. .++++...++.+.......+.+.+.... .+.|+||...|+
T Consensus 17 ~Ii~tGdEl---g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~---~~~DlVittGG~ 82 (169)
T 1y5e_A 17 KIVTISDTR---TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHK---EDVDVVLTNGGT 82 (169)
T ss_dssp EEEEECSSC---CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTC---TTCSEEEEECCC
T ss_pred EEEEEcCcc---CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc---CCCCEEEEcCCC
Confidence 478889998 2222233334444442 2377888888888777666666666541 258999988766
No 73
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=62.71 E-value=20 Score=26.68 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=9.2
Q ss_pred eEEEEccccc
Q 025869 4 QIVLFGDSIT 13 (247)
Q Consensus 4 ~i~~~GDS~~ 13 (247)
+|+++||+-+
T Consensus 15 KivlvGd~~V 24 (216)
T 4dkx_A 15 KLVFLGEQSV 24 (216)
T ss_dssp EEEEECSTTS
T ss_pred EEEEECcCCc
Confidence 7999999987
No 74
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=62.41 E-value=21 Score=22.70 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCCeEEEEcCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~ 120 (247)
++++.+++..|..++++++..
T Consensus 62 ~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 62 EVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHccCCCCeEEEEECC
Confidence 456667777778888888763
No 75
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=61.79 E-value=14 Score=23.85 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc-ccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN-DAA 78 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N-D~~ 78 (247)
|+.+|+++.|+-.. ...+...+. .++.+.. .. +.......+.. . +||+|++.+... +..
T Consensus 4 m~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~~~~~---~----~~dlvi~d~~~~~~~~ 64 (127)
T 2gkg_A 4 MSKKILIVESDTAL--------SATLRSALEGRGFTVDE-TT---DGKGSVEQIRR---D----RPDLVVLAVDLSAGQN 64 (127)
T ss_dssp --CEEEEECSCHHH--------HHHHHHHHHHHTCEEEE-EC---CHHHHHHHHHH---H----CCSEEEEESBCGGGCB
T ss_pred CCCeEEEEeCCHHH--------HHHHHHHHHhcCceEEE-ec---CHHHHHHHHHh---c----CCCEEEEeCCCCCCCC
Confidence 44589999988763 223333332 1244431 11 22333333332 2 689999965433 221
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEE
Q 025869 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLI 117 (247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~p~~~ivl~ 117 (247)
-.++++.+++. .+.++++++
T Consensus 65 -------------------g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 65 -------------------GYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp -------------------HHHHHHHHHHSTTTTTSCEEEE
T ss_pred -------------------HHHHHHHHhcCccccCCCEEEE
Confidence 12466777776 577778887
No 76
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=61.09 E-value=33 Score=22.69 Aligned_cols=82 Identities=18% Similarity=0.065 Sum_probs=44.4
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
+++|+++.|+-.. ...+...+...+.+. ... +.......+. .. .||+|++-+..-+..
T Consensus 1 ~~~Ilivdd~~~~--------~~~l~~~l~~~~~v~-~~~---~~~~a~~~~~---~~----~~dlvl~D~~lp~~~--- 58 (139)
T 2jk1_A 1 APAILLVDDEPHS--------LAAMKLALEDDFDVL-TAQ---GAEAAIAILE---EE----WVQVIICDQRMPGRT--- 58 (139)
T ss_dssp -CEEEEECSSHHH--------HHHHHHHHTTTSCEE-EES---SHHHHHHHHH---HS----CEEEEEEESCCSSSC---
T ss_pred CCeEEEEcCCHHH--------HHHHHHHhhcCceEE-EcC---CHHHHHHHHh---cC----CCCEEEEeCCCCCCc---
Confidence 3678999888662 344555554334443 111 2233333332 22 689999954332211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++..|..++++++...
T Consensus 59 ----------------g~~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 59 ----------------GVDFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp ----------------HHHHHHHHHHHCTTSEEEEEESCT
T ss_pred ----------------HHHHHHHHHHhCCCCcEEEEeCCC
Confidence 114566677777788888887643
No 77
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=61.05 E-value=46 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 92 EEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 92 ~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
....+.+.++++.+++++|+. .+++.|
T Consensus 89 ~~~~~~v~~~l~~~~~~~~~~-~vv~DP 115 (289)
T 3pzs_A 89 PEQGSHILAAVAQVKQANPDA-WYFCDP 115 (289)
T ss_dssp HHHHHHHHHHHHHHHHHCTTC-EEEECC
T ss_pred HHHHHHHHHHHHHHHhhCCCC-eEEEcC
Confidence 455677888999999887665 445553
No 78
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=61.04 E-value=20 Score=23.75 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=43.4
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
++|+++.|+-.. ...+...+.. ++.+.... +...+...+. .. +||+|++.+..-+..
T Consensus 7 ~~iLivdd~~~~--------~~~l~~~l~~~g~~v~~~~----~~~~a~~~l~---~~----~~dlvi~d~~l~~~~--- 64 (140)
T 3grc_A 7 PRILICEDDPDI--------ARLLNLMLEKGGFDSDMVH----SAAQALEQVA---RR----PYAAMTVDLNLPDQD--- 64 (140)
T ss_dssp SEEEEECSCHHH--------HHHHHHHHHHTTCEEEEEC----SHHHHHHHHH---HS----CCSEEEECSCCSSSC---
T ss_pred CCEEEEcCCHHH--------HHHHHHHHHHCCCeEEEEC----CHHHHHHHHH---hC----CCCEEEEeCCCCCCC---
Confidence 589999888763 2344444421 24432211 2233333332 22 699999954322211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCeEEEEcC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITP 119 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~~~ivl~~~ 119 (247)
-.++++.+++ ..+.++|++++.
T Consensus 65 ----------------g~~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 65 ----------------GVSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp ----------------HHHHHHHHHTSGGGTTCEEEEECT
T ss_pred ----------------HHHHHHHHHhCcccCCCCEEEEec
Confidence 1256677776 567888888876
No 79
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=60.86 E-value=30 Score=22.22 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=41.9
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|..+|+++.|+-.. ...+...+. .++.+.. .. +...+.+.+ ... +||+|++-+..-+..
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~al~~~---~~~----~~dlii~D~~~p~~~- 60 (120)
T 3f6p_A 1 MDKKILVVDDEKPI--------ADILEFNLRKEGYEVHC-AH---DGNEAVEMV---EEL----QPDLILLDIMLPNKD- 60 (120)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHHHH---HTT----CCSEEEEETTSTTTH-
T ss_pred CCCeEEEEECCHHH--------HHHHHHHHHhCCEEEEE-eC---CHHHHHHHH---hhC----CCCEEEEeCCCCCCC-
Confidence 67899999998763 233444442 2244432 11 223333332 222 799999954322211
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
-.++++.+++.. ..++++++.
T Consensus 61 ------------------g~~~~~~lr~~~-~~~ii~~t~ 81 (120)
T 3f6p_A 61 ------------------GVEVCREVRKKY-DMPIIMLTA 81 (120)
T ss_dssp ------------------HHHHHHHHHTTC-CSCEEEEEE
T ss_pred ------------------HHHHHHHHHhcC-CCCEEEEEC
Confidence 124556666554 566777765
No 80
>3e59_A Pyoverdine biosynthesis protein PVCA; isonitrIle, paerucumarin, 2-isocyano-6,7-dihydroxycoum transferase; HET: PGE; 2.10A {Pseudomonas aeruginosa}
Probab=60.71 E-value=27 Score=28.06 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=42.9
Q ss_pred CCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcC
Q 025869 87 QHVPVEEYGDNLKIMVQHLKRLS-PIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG 165 (247)
Q Consensus 87 ~~~~~~~~~~~l~~~i~~~~~~~-p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 165 (247)
+....+--...|..+++.+++-+ ||+++.+++= ... |+ .....-.+.+..|.+.+++++.+.+
T Consensus 82 PD~gEelAL~~Ln~lc~~I~~vY~PGa~v~IiSD-----G~V-------fn----DligV~D~~v~~Yg~~Lr~m~~~~g 145 (330)
T 3e59_A 82 PDMAERLSLSFLNHLCQRIQLFYAPGAKITVCSD-----GRV-------FG----DLVRIGDAHISAYQDALRLMIEEIG 145 (330)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTCEEEEECCC-----HHH-------HG----GGTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC-----Cce-------ec----cccCCCHHHHHHHHHHHHHHHHhcC
Confidence 33344456678999999998876 7888877754 111 11 1112233456789999999998877
Q ss_pred CCee
Q 025869 166 VPFI 169 (247)
Q Consensus 166 v~~v 169 (247)
..-|
T Consensus 146 ~~~I 149 (330)
T 3e59_A 146 ATHI 149 (330)
T ss_dssp CSSE
T ss_pred CCce
Confidence 5433
No 81
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=60.30 E-value=11 Score=27.59 Aligned_cols=65 Identities=9% Similarity=-0.178 Sum_probs=43.8
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+..||.+. .|- ...-...+...+. .++++...++-........+.+.+.... +.|+||...|+
T Consensus 34 aIistGdEl~-~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~----~~DlVIttGGt 99 (185)
T 3rfq_A 34 LVVVVDDRTA-HGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIG----GVDLVVSVGGT 99 (185)
T ss_dssp EEEEECHHHH-TTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHT----TCSEEEEESCC
T ss_pred EEEEECcccC-CCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhC----CCCEEEECCCC
Confidence 4788899998 454 4455556666553 2367777777777776666666665422 68999998766
No 82
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=60.23 E-value=24 Score=23.33 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=25.3
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEc-CC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT-PP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~-~~ 120 (247)
.||++++.+..-+.. -.++++.+++..+.+++++++ ..
T Consensus 60 ~~dlvilD~~l~~~~-------------------g~~~~~~l~~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 60 TCDLLIVSDQLVDLS-------------------IFSLLDIVKEQTKQPSVLILTTGR 98 (138)
T ss_dssp SCSEEEEETTCTTSC-------------------HHHHHHHHTTSSSCCEEEEEESCC
T ss_pred CCCEEEEeCCCCCCC-------------------HHHHHHHHHhhCCCCCEEEEECCC
Confidence 699999955332221 124677777777888888887 53
No 83
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=59.21 E-value=34 Score=22.24 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=42.1
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcc--cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAA 78 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~ 78 (247)
|+.+|+++.|+-.. ...+...+.. ++.+.....+ ...+...+.. . +||++++-+..-+.
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~l~~~~~~~~~~~~~~---~~~a~~~~~~---~----~~dlvllD~~l~~~- 61 (130)
T 1dz3_A 1 MSIKVCIADDNREL--------VSLLDEYISSQPDMEVIGTAYN---GQDCLQMLEE---K----RPDILLLDIIMPHL- 61 (130)
T ss_dssp -CEEEEEECSCHHH--------HHHHHHHHHTSTTEEEEEEESS---HHHHHHHHHH---H----CCSEEEEESCCSSS-
T ss_pred CceEEEEEcCCHHH--------HHHHHHHHHhCCCceEEEEeCC---HHHHHHHHhc---C----CCCEEEEecCCCCC-
Confidence 66789999988762 3455555532 2233222222 2333333322 2 68999995533221
Q ss_pred ccCCCCCCCCCChhHHHHHHHHHHHHHHHh-CCCCeEEEEcC
Q 025869 79 LFGRTSERQHVPVEEYGDNLKIMVQHLKRL-SPIMLVVLITP 119 (247)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~p~~~ivl~~~ 119 (247)
+. .++++.+++. .+..++++++.
T Consensus 62 -----------~g-------~~~~~~l~~~~~~~~~ii~ls~ 85 (130)
T 1dz3_A 62 -----------DG-------LAVLERIRAGFEHQPNVIMLTA 85 (130)
T ss_dssp -----------CH-------HHHHHHHHHHCSSCCEEEEEEE
T ss_pred -----------CH-------HHHHHHHHhcCCCCCcEEEEec
Confidence 11 1455566654 45676777765
No 84
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=58.51 E-value=40 Score=22.85 Aligned_cols=81 Identities=19% Similarity=0.050 Sum_probs=43.8
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+.. ++.+... .+...+ +..+.. .+||+|++.+...+..
T Consensus 7 ~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~~----~~~~~a---l~~l~~----~~~dlii~D~~l~~~~-- 65 (154)
T 3gt7_A 7 AGEILIVEDSPTQ--------AEHLKHILEETGYQTEHV----RNGREA---VRFLSL----TRPDLIISDVLMPEMD-- 65 (154)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHTTTCEEEEE----SSHHHH---HHHHTT----CCCSEEEEESCCSSSC--
T ss_pred CCcEEEEeCCHHH--------HHHHHHHHHHCCCEEEEe----CCHHHH---HHHHHh----CCCCEEEEeCCCCCCC--
Confidence 3589999887763 3445555532 2433221 122333 333333 3799999965433321
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~--~p~~~ivl~~~~ 120 (247)
-.++++.+++. .+.++||+++..
T Consensus 66 -----------------g~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 66 -----------------GYALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp -----------------HHHHHHHHHHSTTTTTSCEEEEECC
T ss_pred -----------------HHHHHHHHHhCCCcCCCCEEEEECC
Confidence 12455666665 367778888763
No 85
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=57.57 E-value=37 Score=22.21 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~p 121 (247)
++++.+++..|..+|++++...
T Consensus 66 ~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 66 EVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp HHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHHHCCCCcEEEEecCC
Confidence 5666777777888888887643
No 86
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=56.82 E-value=26 Score=25.57 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=45.2
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|.-+|+++.|+... ...+...+. .++.+. ... +...+...+. .. .||+|++.+..-+..
T Consensus 1 M~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~-~~~---~~~~a~~~~~---~~----~~dlvllD~~l~~~~- 60 (225)
T 1kgs_A 1 MNVRVLVVEDERDL--------ADLITEALKKEMFTVD-VCY---DGEEGMYMAL---NE----PFDVVILDIMLPVHD- 60 (225)
T ss_dssp -CCEEEEECSSHHH--------HHHHHHHHHHTTCEEE-EES---SHHHHHHHHH---HS----CCSEEEEESCCSSSC-
T ss_pred CCceEEEEeCCHHH--------HHHHHHHHHHCCCEEE-EEC---CHHHHHHHHh---cC----CCCEEEEeCCCCCCC-
Confidence 56689999988763 233333332 224443 211 2233333332 22 699999954332211
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
--++++.+++..|.++|++++..
T Consensus 61 ------------------g~~~~~~lr~~~~~~~ii~ls~~ 83 (225)
T 1kgs_A 61 ------------------GWEILKSMRESGVNTPVLMLTAL 83 (225)
T ss_dssp ------------------HHHHHHHHHHTTCCCCEEEEESS
T ss_pred ------------------HHHHHHHHHhcCCCCCEEEEeCC
Confidence 12567777877788889988764
No 87
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=56.34 E-value=40 Score=22.17 Aligned_cols=82 Identities=15% Similarity=0.059 Sum_probs=44.1
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc--ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC--RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~--~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
+.+|+++.|+-.. ...+...+. .++.+.....+ .......+.. . +||+|++.+...+..
T Consensus 8 ~~~iLivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~~---~~~a~~~l~~---~----~~dlii~d~~l~~~~- 68 (143)
T 3cnb_A 8 DFSILIIEDDKEF--------ADMLTQFLENLFPYAKIKIAYN---PFDAGDLLHT---V----KPDVVMLDLMMVGMD- 68 (143)
T ss_dssp -CEEEEECSCHHH--------HHHHHHHHHHHCTTCEEEEECS---HHHHHHHHHH---T----CCSEEEEETTCTTSC-
T ss_pred CceEEEEECCHHH--------HHHHHHHHHhccCccEEEEECC---HHHHHHHHHh---c----CCCEEEEecccCCCc-
Confidence 3588999888763 233444443 23442222222 2323333322 2 689999965433321
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCeEEEEcCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPP 120 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~~~ivl~~~~ 120 (247)
-.++++.+++ ..+.++||+++..
T Consensus 69 ------------------g~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 69 ------------------GFSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp ------------------HHHHHHHHHTSTTTTTSEEEEEESS
T ss_pred ------------------HHHHHHHHHhCccccCCcEEEEeCC
Confidence 1256777777 5678888888764
No 88
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=56.05 E-value=15 Score=26.61 Aligned_cols=66 Identities=12% Similarity=-0.091 Sum_probs=40.5
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc----ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC----RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~----~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+.+||.+. .|.-...-...|...+. .++++ ..++.+.......+.+.+.... .+.|+||...|+
T Consensus 9 ~IistGdE~~-~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~---~~~DlVittGG~ 78 (178)
T 2pbq_A 9 GVVTISDRAS-KGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADE---KGCSLILTTGGT 78 (178)
T ss_dssp EEEEECHHHH-HTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHT---SCCSEEEEESCC
T ss_pred EEEEeCCcCC-CCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhc---CCCCEEEECCCC
Confidence 5788899987 44333333444555332 34666 6667777766666666665531 157999888765
No 89
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=56.00 E-value=29 Score=23.03 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCCCeEEEEcCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~ 120 (247)
++++.+++..+...|++++..
T Consensus 72 ~~~~~l~~~~~~~~ii~~s~~ 92 (143)
T 2qv0_A 72 LLAQNISQFAHKPFIVFITAW 92 (143)
T ss_dssp HHHHHHTTSTTCCEEEEEESC
T ss_pred HHHHHHHccCCCceEEEEeCC
Confidence 566677776667767777653
No 90
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=55.80 E-value=16 Score=25.16 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCCeeechHH
Q 025869 155 RQCIETAKDLGVPFIDLWSK 174 (247)
Q Consensus 155 ~~~~~~a~~~~v~~vD~~~~ 174 (247)
+.+.+.|++.|+.+++-+-.
T Consensus 106 ~~l~~~a~~~Gi~~igpnc~ 125 (138)
T 1y81_A 106 EEIRRFLEKAGVEYSFGRCI 125 (138)
T ss_dssp HHHHHHHHHHTCEEECSCCH
T ss_pred HHHHHHHHHCCCEEEcCCcc
Confidence 44556688889999986543
No 91
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=55.70 E-value=40 Score=22.01 Aligned_cols=81 Identities=11% Similarity=0.010 Sum_probs=43.6
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+. .++.+. ... +.......+. .. .||+|++.+..-|..
T Consensus 3 ~~~Ilivdd~~~~--------~~~l~~~L~~~g~~v~-~~~---~~~~al~~~~---~~----~~dlvl~D~~l~~~~-- 61 (132)
T 3crn_A 3 LKRILIVDDDTAI--------LDSTKQILEFEGYEVE-IAA---TAGEGLAKIE---NE----FFNLALFXIKLPDME-- 61 (132)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHHTTCEEE-EES---SHHHHHHHHH---HS----CCSEEEECSBCSSSB--
T ss_pred ccEEEEEeCCHHH--------HHHHHHHHHHCCceEE-EeC---CHHHHHHHHh---cC----CCCEEEEecCCCCCc--
Confidence 3589999988763 233344332 224443 222 2233333332 22 689999954332221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
-.++++.+++..+.+++++++..
T Consensus 62 -----------------g~~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 62 -----------------GTELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp -----------------HHHHHHHHHHHCTTSEEEEEESC
T ss_pred -----------------hHHHHHHHHhhCCCCcEEEEecc
Confidence 12456667777778888888764
No 92
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=55.10 E-value=71 Score=24.72 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=45.5
Q ss_pred cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q 025869 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (247)
Q Consensus 33 ~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~ 112 (247)
.+.+.+-|++|.+... .+.+.++ +-++ +.+|-|-...+. .-+.++..+...++++.+.+. ++
T Consensus 7 ~IgvfDSGvGGltv~~---~i~~~lP-----~~~~--iy~~D~a~~PYG------~ks~~~i~~~~~~~~~~L~~~--g~ 68 (269)
T 3ist_A 7 AIGFIDSGVGGLTVVR---EVLKQLP-----HEQV--YYLGDTARCPYG------PRDKEEVAKFTWEMTNFLVDR--GI 68 (269)
T ss_dssp CEEEEESSSTTHHHHH---HHHHHCT-----TCCE--EEEECGGGCCCT------TSCHHHHHHHHHHHHHHHHHT--TC
T ss_pred cEEEEECCccHHHHHH---HHHHHCC-----CCcE--EEEeCCCCCCCC------CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 3678899999977653 3334443 2344 455555544332 246788888999999999988 66
Q ss_pred eEEEEcC
Q 025869 113 LVVLITP 119 (247)
Q Consensus 113 ~ivl~~~ 119 (247)
+.+++..
T Consensus 69 ~~IVIAC 75 (269)
T 3ist_A 69 KMLVIAC 75 (269)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 6777765
No 93
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=54.75 E-value=71 Score=24.57 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=44.7
Q ss_pred cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q 025869 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (247)
Q Consensus 33 ~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~ 112 (247)
.+.+.+-|++|.+.. ..+.+.. |+..++.+|-++...+. ..+.++..+.+.++++.+.+. ++
T Consensus 5 ~IgvfDSGvGGltv~---~~i~~~l-------P~~~~iy~~D~~~~Pyg------~~s~~~i~~~~~~~~~~L~~~--g~ 66 (267)
T 2gzm_A 5 AIGVIDSGVGGLTVA---KELIRQL-------PKERIIYLGDTARCPYG------PRSREEVRQFTWEMTEHLLDL--NI 66 (267)
T ss_dssp CEEEEESSSTTHHHH---HHHHHHC-------TTSCEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHHTT--TC
T ss_pred cEEEEeCCccHHHHH---HHHHHHC-------CCCCEEEecCCCCCCCC------CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 366888899986655 3333433 34445566766654331 135777888888888888877 66
Q ss_pred eEEEEcC
Q 025869 113 LVVLITP 119 (247)
Q Consensus 113 ~ivl~~~ 119 (247)
+.+++..
T Consensus 67 d~iviaC 73 (267)
T 2gzm_A 67 KMLVIAC 73 (267)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 6777765
No 94
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=54.62 E-value=53 Score=23.11 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=41.6
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP- 110 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p- 110 (247)
.++++++.|..- +... ........ +||+|.++.- ...+...+.++++.+++.++
T Consensus 45 ~G~eVi~lG~~~-p~e~---lv~aa~~~----~~diV~lS~~-----------------~~~~~~~~~~~i~~L~~~g~~ 99 (161)
T 2yxb_A 45 AGFEVVYTGLRQ-TPEQ---VAMAAVQE----DVDVIGVSIL-----------------NGAHLHLMKRLMAKLRELGAD 99 (161)
T ss_dssp TTCEEECCCSBC-CHHH---HHHHHHHT----TCSEEEEEES-----------------SSCHHHHHHHHHHHHHHTTCT
T ss_pred CCCEEEECCCCC-CHHH---HHHHHHhc----CCCEEEEEee-----------------chhhHHHHHHHHHHHHhcCCC
Confidence 348899888762 3332 23333333 7999988641 12346678899999998864
Q ss_pred CCeEEEEcCCC
Q 025869 111 IMLVVLITPPP 121 (247)
Q Consensus 111 ~~~ivl~~~~p 121 (247)
+++|++-+.++
T Consensus 100 ~i~v~vGG~~~ 110 (161)
T 2yxb_A 100 DIPVVLGGTIP 110 (161)
T ss_dssp TSCEEEEECCC
T ss_pred CCEEEEeCCCc
Confidence 67777777643
No 95
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=54.62 E-value=15 Score=26.08 Aligned_cols=68 Identities=9% Similarity=-0.158 Sum_probs=44.6
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-.|+.+||.+. .|.-...-...|.+.+. .++++...++-+.......+.+.+.... .+.|+||...|+
T Consensus 4 v~Ii~tGdEl~-~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~---~~~DlVittGG~ 72 (164)
T 2is8_A 4 VGILTVSDKGF-RGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADR---EGLDLILTNGGT 72 (164)
T ss_dssp EEEEEECHHHH-HTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHT---SCCSEEEEESCC
T ss_pred EEEEEEcCccc-CCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhc---CCCCEEEEcCCC
Confidence 36888999987 45433444556666664 2466777777777776666666665531 157999888765
No 96
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Probab=52.94 E-value=35 Score=27.10 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=31.1
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..|+||+..|..-.. +.....-...-..-++.+++.+++..|++.+++++.|
T Consensus 68 ~aDvVvi~ag~~~~~-----g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNP 119 (314)
T 1mld_A 68 GCDVVVIPAGVPRKP-----GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119 (314)
T ss_dssp TCSEEEECCSCCCCT-----TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred CCCEEEECCCcCCCC-----CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCC
Confidence 578888887764221 1100111223344577788888888899977776553
No 97
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=52.62 E-value=44 Score=22.42 Aligned_cols=39 Identities=13% Similarity=0.051 Sum_probs=25.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKR--LSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~p~~~ivl~~~~ 120 (247)
.+||+|++.+...+.. -.++++.+++ ..+.++||+++..
T Consensus 58 ~~~dliilD~~l~~~~-------------------g~~~~~~lr~~~~~~~~pii~~t~~ 98 (152)
T 3heb_A 58 GRAQLVLLDLNLPDMT-------------------GIDILKLVKENPHTRRSPVVILTTT 98 (152)
T ss_dssp TCBEEEEECSBCSSSB-------------------HHHHHHHHHHSTTTTTSCEEEEESC
T ss_pred CCCCEEEEeCCCCCCc-------------------HHHHHHHHHhcccccCCCEEEEecC
Confidence 4799999954332221 1256667777 5678888888764
No 98
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=49.92 E-value=20 Score=25.49 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=40.8
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-c-----cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-R-----KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~-----~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+..||.+. .|.....-...+.+.+. . ++++...++.........+.+.+.... .+.|+||...|+
T Consensus 9 ~IistGde~~-~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~---~~~DlVittGG~ 81 (167)
T 1uuy_A 9 AILTVSDTVS-AGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDV---DEMDLILTLGGT 81 (167)
T ss_dssp EEEEECHHHH-TTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHT---SCCSEEEEESCC
T ss_pred EEEEECCccc-CCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhc---CCCCEEEECCCC
Confidence 4788999885 44332222233444432 1 366777788777777666666665420 268999888765
No 99
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=49.86 E-value=45 Score=23.49 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHh----cccCcEEecCCCCCch
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY----CRKADVLLRGYGGYNT 46 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~----~~~~~v~n~g~~G~~t 46 (247)
||..|+.+|+.+.. +.+....+.+.+ ..++++++.|..|...
T Consensus 4 M~~lVlGiGN~l~g----DDG~G~~v~~~L~~~~~~~v~vid~gt~~~~l 49 (159)
T 2e85_A 4 VTDVLLCVGNSMMG----DDGAGPLLAEKCAAAPKGNWVVIDGGSAPEND 49 (159)
T ss_dssp CCEEEEEECCGGGG----GGGHHHHHHHHHHHSCCTTCEEEECTTCSGGG
T ss_pred CCEEEEEECCcccc----cccHHHHHHHHHhhhCCCCeEEEECCCCHHHH
Confidence 66678888888763 445655555554 3457788878777543
No 100
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=49.55 E-value=41 Score=22.20 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=40.7
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++.|+-.. ...+...+. .++.+.. .. +...+.+.+. .. .||+|++-+..-+..
T Consensus 5 ~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~al~~~~---~~----~~dlvl~D~~lp~~~--- 62 (136)
T 3t6k_A 5 HTLLIVDDDDTV--------AEMLELVLRGAGYEVRR-AA---SGEEALQQIY---KN----LPDALICDVLLPGID--- 62 (136)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHHHHH---HS----CCSEEEEESCCSSSC---
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHHCCCEEEE-eC---CHHHHHHHHH---hC----CCCEEEEeCCCCCCC---
Confidence 489999988763 234444442 2244432 11 2333333332 22 799999954332221
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEcC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRL--SPIMLVVLITP 119 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~--~p~~~ivl~~~ 119 (247)
--++++.+++. .+..+|++++.
T Consensus 63 ----------------g~~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 63 ----------------GYTLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp ----------------HHHHHHHHHHSGGGTTCCEEEEEC
T ss_pred ----------------HHHHHHHHHcCCCcCCccEEEEec
Confidence 12445555553 34667887776
No 101
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Probab=49.25 E-value=34 Score=27.39 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=32.5
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHH---HHHHHHHHHHhCCCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+.|+||+..|..-.- .....+.+..| ++.+++.+.+..|++.+++++.|
T Consensus 71 ~~~aDvVvi~ag~p~kp--------G~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP 124 (326)
T 3pqe_A 71 CKDADIVCICAGANQKP--------GETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP 124 (326)
T ss_dssp GTTCSEEEECCSCCCCT--------TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred hCCCCEEEEecccCCCC--------CccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence 34679999988763211 01123334444 77888888888999977777654
No 102
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=48.47 E-value=71 Score=22.78 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=41.3
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|..+|+++.|+-.. ...+...+. .++.+.....+| ..+...+.. . .||+|++-+..-+..
T Consensus 12 m~~~iLivdd~~~~--------~~~l~~~L~~~g~~v~~~~~~~---~~al~~~~~---~----~~dlvi~D~~~p~~~- 72 (205)
T 1s8n_A 12 VPRRVLIAEDEALI--------RMDLAEMLREEGYEIVGEAGDG---QEAVELAEL---H----KPDLVIMDVKMPRRD- 72 (205)
T ss_dssp CCCEEEEECSSHHH--------HHHHHHHHHHTTCEEEEEESSH---HHHHHHHHH---H----CCSEEEEESSCSSSC-
T ss_pred CCccEEEEECCHHH--------HHHHHHHHHHCCCEEEEEeCCH---HHHHHHHhh---c----CCCEEEEeCCCCCCC-
Confidence 45689999988763 233444443 234443222222 222233322 2 689999954332221
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
. -++++.++...+. +||+++.
T Consensus 73 -----------g-------~~~~~~l~~~~~~-pii~lt~ 93 (205)
T 1s8n_A 73 -----------G-------IDAASEIASKRIA-PIVVLTA 93 (205)
T ss_dssp -----------H-------HHHHHHHHHTTCS-CEEEEEE
T ss_pred -----------h-------HHHHHHHHhcCCC-CEEEEec
Confidence 1 1456666666554 5666654
No 103
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=48.16 E-value=54 Score=21.25 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=45.5
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
+|+++.|+... ...+...+.. ++.+.....++.... ..+.. .+||+|++.+...+..
T Consensus 3 ~ilivdd~~~~--------~~~l~~~L~~~g~~v~~~~~~~~~a~---~~~~~-------~~~dlii~d~~l~~~~---- 60 (134)
T 3f6c_A 3 NAIIIDDHPLA--------IAAIRNLLIKNDIEILAELTEGGSAV---QRVET-------LKPDIVIIDVDIPGVN---- 60 (134)
T ss_dssp EEEEECCCHHH--------HHHHHHHHHHTTEEEEEEESSSTTHH---HHHHH-------HCCSEEEEETTCSSSC----
T ss_pred EEEEEcCCHHH--------HHHHHHHHhhCCcEEEEEcCCHHHHH---HHHHh-------cCCCEEEEecCCCCCC----
Confidence 68888887663 2344444421 234432333333322 22222 2699999965443321
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++..|..++++++...
T Consensus 61 ---------------g~~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 61 ---------------GIQVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp ---------------HHHHHHHHHHTTCCSEEEEEECC-
T ss_pred ---------------hHHHHHHHHhcCCCCeEEEEeCCC
Confidence 235677788888888888887744
No 104
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=47.89 E-value=49 Score=26.59 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=33.4
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHH---HHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+.|+|||..|..--- + ....+.+. +-++.+++.+.+..|++.+++++.|
T Consensus 87 ~~daDiVIitaG~p~kp-----G---~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP 140 (330)
T 3ldh_A 87 SAGSKLVVITAGARQQE-----G---ESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL 140 (330)
T ss_dssp CSSCSEEEECCSCCCCS-----S---CCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred hCCCCEEEEeCCCCCCC-----C---CCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence 45679999988875321 1 11233333 3477888888888999977777754
No 105
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=47.05 E-value=97 Score=23.89 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=44.8
Q ss_pred CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHH-hCCCC
Q 025869 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKR-LSPIM 112 (247)
Q Consensus 34 ~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~p~~ 112 (247)
+.+.+-|++|.+.. ..+.+.. |+.-++.+|-++...+. ..+.++..+.+.++++.+.+ . ++
T Consensus 6 IgvfDSGvGGltv~---~~i~~~l-------P~~~~iy~~D~~~~PyG------~~s~~~i~~~~~~~~~~L~~~~--g~ 67 (272)
T 1zuw_A 6 IGVIDSGVGGLTVA---KEIMRQL-------PKENIIYVGDTKRCPYG------PRPEEEVLQYTWELTNYLLENH--HI 67 (272)
T ss_dssp EEEEESSSTTHHHH---HHHHHHS-------TTCCEEEEECGGGCCCS------SSCHHHHHHHHHHHHHHHHHHS--CC
T ss_pred EEEEeCCcchHHHH---HHHHHhC-------CCCcEEEeccCCCCCCC------CCCHHHHHHHHHHHHHHHHhhc--CC
Confidence 66888899986553 2333333 34446677777655332 13677888888899998888 7 56
Q ss_pred eEEEEcC
Q 025869 113 LVVLITP 119 (247)
Q Consensus 113 ~ivl~~~ 119 (247)
+.+++..
T Consensus 68 d~iViAC 74 (272)
T 1zuw_A 68 KMLVIAC 74 (272)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 6777765
No 106
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Probab=46.95 E-value=40 Score=26.86 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=31.2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
...|+||+..|..-.. +....--...-..-++.+++.+.+..|++.+++++.|
T Consensus 71 ~~aDvVii~ag~~~~~-----g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 123 (318)
T 1ez4_A 71 KDADLVVITAGAPQKP-----GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANP 123 (318)
T ss_dssp TTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCEEEECCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence 4679999988874221 1101112233445577888888888999988876543
No 107
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=46.52 E-value=23 Score=28.91 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=37.9
Q ss_pred EEecCCC-CCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q 025869 36 VLLRGYG-GYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLV 114 (247)
Q Consensus 36 v~n~g~~-G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~i 114 (247)
.+|..+. |.+....+..++.+++.....+||+|++..|. |....+.. +....+.+.|. .+.+.+++. +.++
T Consensus 262 ~vNvPL~~g~~d~~yl~~~~~~l~~l~~f~PdlIvvsaG~-Da~~~Dpl-g~l~lt~~~~~----~~~~~l~~~--~~~~ 333 (362)
T 3men_A 262 NVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGF-DVYRDDPQ-SQVAVTTDGFG----RLGHLIGAL--RLPT 333 (362)
T ss_dssp EEEEEECTTBCHHHHHHHHHHHHHHHHHHCCSEEEEEECS-TTBTTCTT-CCBCBCHHHHH----HHHHHHHTT--CCCE
T ss_pred eEeeccCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcc-cCcCCCCC-CCccCCHHHHH----HHHHHHHhh--CCCE
Confidence 3454443 33333334444444332234589999999998 44333322 12334555544 456666665 3345
Q ss_pred EEEc
Q 025869 115 VLIT 118 (247)
Q Consensus 115 vl~~ 118 (247)
+++.
T Consensus 334 v~vl 337 (362)
T 3men_A 334 VIVQ 337 (362)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 108
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=46.12 E-value=31 Score=27.60 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=32.2
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+.|+||+..|..--. +. ...+.+ ..-++.+++.+.+..|++.+++++.|
T Consensus 73 ~~~aDiVIiaag~p~k~-----G~---~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP 126 (324)
T 3gvi_A 73 IEGADVVIVTAGVPRKP-----GM---SRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP 126 (324)
T ss_dssp GTTCSEEEECCSCCCC-------------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred HCCCCEEEEccCcCCCC-----CC---CHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 34679999988864221 10 122333 34477888888888999977777754
No 109
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Probab=45.50 E-value=40 Score=26.56 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=32.2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCC-ChhHHH---HHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHV-PVEEYG---DNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~-~~~~~~---~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|..-- ++. ..+.+. .-++.+.+.+.+..|++.+++++.|
T Consensus 68 ~~aDiVViaag~~~k---------pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNP 120 (294)
T 1oju_A 68 KGSEIIVVTAGLARK---------PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120 (294)
T ss_dssp TTCSEEEECCCCCCC---------SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred CCCCEEEECCCCCCC---------CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence 357899998886522 112 233333 3467788888888999987777753
No 110
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=45.42 E-value=26 Score=25.13 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=39.6
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+.+||.+.. ....-...|.+.+. .++++...++.+.......+.+.+.... .+.|+||...|+
T Consensus 14 ~Ii~tGdE~g~---i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~---~~~DlVittGG~ 79 (172)
T 1mkz_A 14 AILTVSNRRGE---EDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS---DDVQVVLITGGT 79 (172)
T ss_dssp EEEEECSSCCG---GGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHS---SSCCEEEEESCC
T ss_pred EEEEEeCCCCc---ccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc---CCCCEEEeCCCC
Confidence 47888999531 12222334444442 2367777788777777666666665531 147999888765
No 111
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=45.31 E-value=99 Score=23.51 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=44.3
Q ss_pred CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q 025869 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (247)
Q Consensus 34 ~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ 113 (247)
+.+.+-|++|.+... .+.+.. |+..++.+|-+-...+. ..+.++..+.+.+.++.+.+. +++
T Consensus 3 igvfDSG~GGltv~~---~l~~~l-------P~~~~iy~~D~~~~Pyg------~~s~~~i~~~~~~~~~~L~~~--g~d 64 (255)
T 2jfz_A 3 IGVFDSGVGGFSVLK---SLLKAR-------LFDEIIYYGDSARVPYG------TKDPTTIKQFGLEALDFFKPH--EIE 64 (255)
T ss_dssp EEEEESSSTTHHHHH---HHHHTT-------CCSEEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHGGG--CCS
T ss_pred EEEEECCccHHHHHH---HHHHHC-------CCCCEEEEeCCCCCCCC------CCCHHHHHHHHHHHHHHHHHC--CCC
Confidence 457888999966653 233333 45566677766544321 135778888899999998888 555
Q ss_pred EEEEcC
Q 025869 114 VVLITP 119 (247)
Q Consensus 114 ivl~~~ 119 (247)
.+++..
T Consensus 65 ~iviaC 70 (255)
T 2jfz_A 65 LLIVAC 70 (255)
T ss_dssp CEEECC
T ss_pred EEEEeC
Confidence 666655
No 112
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=44.76 E-value=64 Score=26.36 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHH
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQ 176 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~ 176 (247)
.++..+.++|..+|+.++.++--..+ + ..+-+..++++|++.++.++|....=.
T Consensus 151 e~q~~Lle~re~nPG~~i~LVYsStl-----------------------L---n~~a~~ql~~faken~IsllDids~k~ 204 (525)
T 3jsz_A 151 KQQEALKRRREQYPGCKIRLIYSSSL-----------------------L---NPEANRQMKAFAKKQNISLIDIDSVKT 204 (525)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECSTT-----------------------S---CHHHHHHHHHHHHHTTEEEEEGGGCCC
T ss_pred HHHHHHHHHHhhCCCCeEEEEeehhh-----------------------c---CHHHHHHHHHHHHhcCceEeehhhhcc
Confidence 34555556999999987777744221 1 124456667889999999999975331
Q ss_pred hcccccccccccccCCChhHHHHHHHHHHHHHHhc
Q 025869 177 ETEGWQKKFLSDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 177 ~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
+..-+ ..+...=-|++.-|.-..|.-+..+|...
T Consensus 205 e~~Ly-nl~k~EL~nLg~GGNpAaASDivRWlspv 238 (525)
T 3jsz_A 205 DSPLY-PLIKAELANLGMGGNPAAASDLCRWIPEL 238 (525)
T ss_dssp CCTHH-HHHHHHHHTTTTTCCHHHHHHHHTTCTTT
T ss_pred hHHHH-HHHHHHHHhccCCCCHHHHHHHHHhhHHh
Confidence 11100 01112223788888888888888877665
No 113
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=44.63 E-value=45 Score=26.62 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCC-ChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHV-PVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~-~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
...|+||+..|..-- ++. ..+.+ ..-++.+++.+.+..|++.+++++.|
T Consensus 72 ~~aDvVIi~ag~p~k---------~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP 124 (321)
T 3p7m_A 72 ENSDVVIVTAGVPRK---------PGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNP 124 (321)
T ss_dssp TTCSEEEECCSCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEcCCcCCC---------CCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 467999998876422 112 22333 34477888888888999977777643
No 114
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}
Probab=44.25 E-value=43 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=31.7
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHH---HHHHHHHHHHhCCCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+.|+|||..|.+--- .....+.+..| ++.+.+.+.+..|++.+++++.|
T Consensus 67 ~~~aDvVii~ag~~~kp--------G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP 120 (314)
T 3nep_X 67 TEDSDVCIITAGLPRSP--------GMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANP 120 (314)
T ss_dssp GTTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSS
T ss_pred hCCCCEEEECCCCCCCC--------CCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence 44679999988875321 01234444444 67788888888899977777654
No 115
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=44.12 E-value=90 Score=22.70 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=16.5
Q ss_pred HHHHHHHH-hCCCCeEEEEcCCC
Q 025869 100 IMVQHLKR-LSPIMLVVLITPPP 121 (247)
Q Consensus 100 ~~i~~~~~-~~p~~~ivl~~~~p 121 (247)
++++.+++ ..|.++|++++...
T Consensus 71 ~~~~~lr~~~~~~~~ii~lt~~~ 93 (225)
T 3klo_A 71 TDYSSFKHISCPDAKEVIINCPQ 93 (225)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECT
T ss_pred HHHHHHHHhhCCCCcEEEEECCc
Confidence 56677777 68888899887653
No 116
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=43.75 E-value=31 Score=24.71 Aligned_cols=68 Identities=6% Similarity=-0.057 Sum_probs=41.9
Q ss_pred eEEEEcccccccccC----CCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFG----SAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~----~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+.+||+.++.... ...-...|.+.+. .++++...++-+.......+.+..... ..+.|+|+...|+
T Consensus 19 ~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a---~~~~DlVittGG~ 91 (178)
T 3iwt_A 19 YVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALS---IDEVDVIISTGGT 91 (178)
T ss_dssp EEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHT---CTTCCEEEEESCC
T ss_pred EEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh---cCCCCEEEecCCc
Confidence 378889987642111 1223344555553 347888888888877665555554432 2368999998776
No 117
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=43.01 E-value=49 Score=23.80 Aligned_cols=68 Identities=6% Similarity=-0.069 Sum_probs=41.8
Q ss_pred eEEEEccccc----ccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSIT----QQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~----~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
-|+..||++. ..|.-...-...|...+. .++++...++-........+.+.+.... ...|+||+..|+
T Consensus 19 ~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~---~~~DlVittGG~ 91 (178)
T 2pjk_A 19 YVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSI---DEVDVIISTGGT 91 (178)
T ss_dssp EEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTC---TTCCEEEEESCC
T ss_pred EEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc---CCCCEEEECCCC
Confidence 4888999876 212222233344555442 2367888888887777666666666542 138999988665
No 118
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=42.94 E-value=46 Score=24.91 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=44.9
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++-|.-.. ...+...+. .++.+. ... +...+.+.+.. . +||+|++-+...|..
T Consensus 24 ~~ILivdd~~~~--------~~~l~~~L~~~g~~v~-~~~---~~~~al~~~~~---~----~~dlvllD~~lp~~~--- 81 (250)
T 3r0j_A 24 ARVLVVDDEANI--------VELLSVSLKFQGFEVY-TAT---NGAQALDRARE---T----RPDAVILDVXMPGMD--- 81 (250)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEE-EES---SHHHHHHHHHH---H----CCSEEEEESCCSSSC---
T ss_pred ceEEEEECCHHH--------HHHHHHHHHHCCCEEE-EEC---CHHHHHHHHHh---C----CCCEEEEeCCCCCCC---
Confidence 478888877652 233444442 224443 222 22333333332 2 689999955433321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
--++++.+++..+.++|++++...
T Consensus 82 ----------------g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 82 ----------------GFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp ----------------HHHHHHHHHHTTCCCCEEEEECST
T ss_pred ----------------HHHHHHHHHhcCCCCCEEEEECCC
Confidence 125677788888888888888743
No 119
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=42.81 E-value=94 Score=22.83 Aligned_cols=82 Identities=18% Similarity=0.115 Sum_probs=42.6
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|+.+|+++.|+-.. ...+...+. .++.+.. ..++ ..+...+.. . .||+|++.+..-|..
T Consensus 4 m~~~ILivdd~~~~--------~~~l~~~L~~~g~~v~~-~~~~---~~al~~l~~---~----~~dlvilD~~l~~~~- 63 (238)
T 2gwr_A 4 MRQRILVVDDDASL--------AEMLTIVLRGEGFDTAV-IGDG---TQALTAVRE---L----RPDLVLLDLMLPGMN- 63 (238)
T ss_dssp CCCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ECCG---GGHHHHHHH---H----CCSEEEEESSCSSSC-
T ss_pred ccCeEEEEeCCHHH--------HHHHHHHHHHCCCEEEE-ECCH---HHHHHHHHh---C----CCCEEEEeCCCCCCC-
Confidence 45689999998763 233333332 2344432 2222 222233322 2 689999955332221
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++.. .++|++++...
T Consensus 64 ------------------g~~~~~~lr~~~-~~~ii~lt~~~ 86 (238)
T 2gwr_A 64 ------------------GIDVCRVLRADS-GVPIVMLTAKT 86 (238)
T ss_dssp ------------------HHHHHHHHHTTC-CCCEEEEEETT
T ss_pred ------------------HHHHHHHHHhCC-CCcEEEEeCCC
Confidence 113556666653 67788776643
No 120
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*
Probab=42.53 E-value=53 Score=26.09 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=29.9
Q ss_pred CCcEEEEEccCccccccCCCCCCCCC-ChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHV-PVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
+.|+|||..|..-- ++. ..+.+.. -++.+.+.+.+..|++.+++++.|
T Consensus 69 ~aDivii~ag~~rk---------pG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNP 120 (312)
T 3hhp_A 69 GADVVLISAGVARK---------PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120 (312)
T ss_dssp TCSEEEECCSCSCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred CCCEEEEeCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 56788887775421 112 3333433 466777788888899977777653
No 121
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=42.30 E-value=30 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhcCCCee-echHHHHhcccccccccccccCCChh
Q 025869 150 TGVYARQCIETAKDLGVPFI-DLWSKMQETEGWQKKFLSDGLHLTEE 195 (247)
Q Consensus 150 ~~~~~~~~~~~a~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~ 195 (247)
..+..+.++++|+++++.++ +-.-.+.. .+..||+|+...
T Consensus 81 ~~~~a~~l~~l~~~~~~~liInd~~~lA~------~~gAdGVHLg~~ 121 (243)
T 3o63_A 81 ELAACEILADAAHRYGALFAVNDRADIAR------AAGADVLHLGQR 121 (243)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCHHHHH------HHTCSEEEECTT
T ss_pred HHHHHHHHHHHHHhhCCEEEEeCHHHHHH------HhCCCEEEecCC
Confidence 34556788999999998854 32222221 345689998754
No 122
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=42.18 E-value=43 Score=21.25 Aligned_cols=21 Identities=19% Similarity=0.567 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCCCeEEEEcCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~ 120 (247)
++++.+++..|.+++++++..
T Consensus 64 ~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1dc7_A 64 ALLKQIKQRHPMLPVIIMTAH 84 (124)
T ss_dssp STHHHHHHHCTTSCCCCBCCS
T ss_pred HHHHHHHhhCCCCCEEEEecC
Confidence 355666666778878887764
No 123
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=41.97 E-value=49 Score=26.58 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|..-- ++ ....+.+.. -++.+.+.+.+..|++.+++++.|
T Consensus 86 ~~aDiVvi~aG~~~k-----pG---~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP 138 (331)
T 4aj2_A 86 ANSKLVIITAGARQQ-----EG---ESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138 (331)
T ss_dssp TTEEEEEECCSCCCC-----TT---CCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEEccCCCCC-----CC---ccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence 356888888775421 11 123344444 466777888888999977777754
No 124
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=41.96 E-value=44 Score=24.44 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=41.8
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|..+|+++.|+-.. ...+...+. .++.+.. .. +...+...+.. . +||+|++.+..-+.
T Consensus 3 M~~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~al~~~~~---~----~~dlvllD~~l~~~-- 61 (230)
T 2oqr_A 3 MATSVLIVEDEESL--------ADPLAFLLRKEGFEATV-VT---DGPAALAEFDR---A----GADIVLLDLMLPGM-- 61 (230)
T ss_dssp -CCEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-EC---SHHHHHHHHHH---H----CCSEEEEESSCSSS--
T ss_pred CCCeEEEEeCCHHH--------HHHHHHHHHHCCCEEEE-EC---CHHHHHHHHhc---c----CCCEEEEECCCCCC--
Confidence 56789999998763 233333332 2244431 11 22333333322 2 68999995433221
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
+. .++++.+++. |.++|++++..
T Consensus 62 ----------~g-------~~~~~~l~~~-~~~~ii~lt~~ 84 (230)
T 2oqr_A 62 ----------SG-------TDVCKQLRAR-SSVPVIMVTAR 84 (230)
T ss_dssp ----------CH-------HHHHHHHHHH-CSCSEEEEECC
T ss_pred ----------CH-------HHHHHHHHcC-CCCCEEEEeCC
Confidence 11 1345555554 57778888763
No 125
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=41.79 E-value=47 Score=26.76 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeechHHHH
Q 025869 97 NLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLWSKMQ 176 (247)
Q Consensus 97 ~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~~~~~ 176 (247)
.+...++.++...++..+|++...-........ ......+....+.++.+|++++|++|=+.....
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~--------------~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R 207 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFIDYLQLMSGSKAT--------------KERHEQIAEISRELKTLARELEIPIIALVQLNR 207 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHH--------------HHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHHhcCCCCC--------------CChHHHHHHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 344445545555445668877664332211000 001123557778899999999999987754433
No 126
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=41.56 E-value=72 Score=20.88 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=45.6
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGR 82 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~ 82 (247)
.+|+++.|+-.. ...+...+...-........ .+...+.+.+..... ....||+|++.+...+..
T Consensus 10 ~~iLivdd~~~~--------~~~l~~~l~~~~~~~~v~~~-~~~~~a~~~l~~~~~--~~~~~dlvi~D~~l~~~~---- 74 (146)
T 3ilh_A 10 DSVLLIDDDDIV--------NFLNTTIIRMTHRVEEIQSV-TSGNAAINKLNELYA--AGRWPSIICIDINMPGIN---- 74 (146)
T ss_dssp EEEEEECSCHHH--------HHHHHHHHHTTCCEEEEEEE-SSHHHHHHHHHHHHT--SSCCCSEEEEESSCSSSC----
T ss_pred ceEEEEeCCHHH--------HHHHHHHHHhcCCCeeeeec-CCHHHHHHHHHHhhc--cCCCCCEEEEcCCCCCCC----
Confidence 378888887652 33455555322111111111 133333344443221 124799999965433321
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHH----hCCCCeEEEEcCC
Q 025869 83 TSERQHVPVEEYGDNLKIMVQHLKR----LSPIMLVVLITPP 120 (247)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~~i~~~~~----~~p~~~ivl~~~~ 120 (247)
-.++++.+++ ..+..++++++..
T Consensus 75 ---------------g~~~~~~l~~~~~~~~~~~~ii~~t~~ 101 (146)
T 3ilh_A 75 ---------------GWELIDLFKQHFQPMKNKSIVCLLSSS 101 (146)
T ss_dssp ---------------HHHHHHHHHHHCGGGTTTCEEEEECSS
T ss_pred ---------------HHHHHHHHHHhhhhccCCCeEEEEeCC
Confidence 1246666776 5678888888763
No 127
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=41.40 E-value=66 Score=20.35 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=41.7
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
|..+|+++.|+-.. ...+...+. .++.+.. .. +.......+. .. +||++++.+..-+.
T Consensus 1 m~~~ilivdd~~~~--------~~~l~~~L~~~~~~v~~-~~---~~~~~~~~~~---~~----~~dlvi~d~~l~~~-- 59 (122)
T 1zgz_A 1 MPHHIVIVEDEPVT--------QARLQSYFTQEGYTVSV-TA---SGAGLREIMQ---NQ----SVDLILLDINLPDE-- 59 (122)
T ss_dssp -CCEEEEECSSHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHHHHH---HS----CCSEEEEESCCSSS--
T ss_pred CCcEEEEEECCHHH--------HHHHHHHHHHCCCeEEE-ec---CHHHHHHHHh---cC----CCCEEEEeCCCCCC--
Confidence 66789999988763 223333332 1244432 11 2233333332 22 68999985433222
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
+. .++++.+++ .+..++++++..
T Consensus 60 ----------~g-------~~~~~~l~~-~~~~~ii~~s~~ 82 (122)
T 1zgz_A 60 ----------NG-------LMLTRALRE-RSTVGIILVTGR 82 (122)
T ss_dssp ----------CH-------HHHHHHHHT-TCCCEEEEEESS
T ss_pred ----------Ch-------HHHHHHHHh-cCCCCEEEEECC
Confidence 11 135566666 567778887763
No 128
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.08 E-value=70 Score=20.57 Aligned_cols=79 Identities=14% Similarity=0.099 Sum_probs=41.0
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++.|+-.. ...+...+. .++.+.. .. +...+...+. .. +||+|++.....|..
T Consensus 7 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~~l~---~~----~~dlii~d~~l~~~~--- 64 (132)
T 3lte_A 7 KRILVVDDDQAM--------AAAIERVLKRDHWQVEI-AH---NGFDAGIKLS---TF----EPAIMTLDLSMPKLD--- 64 (132)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHHHHH---HT----CCSEEEEESCBTTBC---
T ss_pred ccEEEEECCHHH--------HHHHHHHHHHCCcEEEE-eC---CHHHHHHHHH---hc----CCCEEEEecCCCCCC---
Confidence 489999887763 233444443 2243432 11 2233333332 22 789999965443321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEcC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITP 119 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~ 119 (247)
-.++++.+++.. +...|++++.
T Consensus 65 ----------------g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 65 ----------------GLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp ----------------HHHHHHHHHTTTCSSCCEEEEECC
T ss_pred ----------------HHHHHHHHHhcCccCCCeEEEEeC
Confidence 125667777765 3555665554
No 129
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=40.73 E-value=39 Score=26.93 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+.|+||+..|..--- + ....+.+.. -++.+.+.+.+..|++.+++++.|
T Consensus 76 ~~~aDvVIiaag~p~kp-----g---~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNP 129 (315)
T 3tl2_A 76 TADSDVVVITAGIARKP-----G---MSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNP 129 (315)
T ss_dssp GTTCSEEEECCSCCCCT-----T---CCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred hCCCCEEEEeCCCCCCC-----C---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCh
Confidence 44679999988864321 0 112333333 467788888888999977777754
No 130
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=40.27 E-value=58 Score=21.47 Aligned_cols=21 Identities=24% Similarity=0.320 Sum_probs=14.5
Q ss_pred HHHHHHHHhC--CCCeEEEEcCC
Q 025869 100 IMVQHLKRLS--PIMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~~--p~~~ivl~~~~ 120 (247)
++++.+++.. +.+++|+++..
T Consensus 79 ~~~~~l~~~~~~~~~~ii~~t~~ 101 (149)
T 1k66_A 79 EVLQEIKQDEVLKKIPVVIMTTS 101 (149)
T ss_dssp HHHHHHTTSTTGGGSCEEEEESC
T ss_pred HHHHHHHhCcccCCCeEEEEeCC
Confidence 5667777654 67778888763
No 131
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=40.00 E-value=1.4e+02 Score=23.86 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=44.6
Q ss_pred CC-ceEEEEcccccccccCCCcHHHHHHHHhcc--cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccc
Q 025869 1 MR-PQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDA 77 (247)
Q Consensus 1 ~~-~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~ 77 (247)
|+ .+|+++.|+-.. ...+...+.. ++.++....++ ....+.+.. . +||+|++-+..-+.
T Consensus 1 M~~~rVLIVDD~~~~--------r~~L~~~L~~~~g~~vv~~a~~~---~eAl~~l~~---~----~pDlVllDi~mp~~ 62 (349)
T 1a2o_A 1 MSKIRVLSVDDSALM--------RQIMTEIINSHSDMEMVATAPDP---LVARDLIKK---F----NPDVLTLDVEMPRM 62 (349)
T ss_dssp CCCEEEEEECSCHHH--------HHHHHHHHHTSTTEEEEEEESSH---HHHHHHHHH---H----CCSEEEEECCCSSS
T ss_pred CCCCEEEEEECCHHH--------HHHHHHHHhcCCCcEEEEEeCCH---HHHHHHHhc---c----CCCEEEEECCCCCC
Confidence 44 489999999773 3455555542 23333333332 222233322 2 68999995432221
Q ss_pred cccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 78 ALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
. -.++++.+++..| +++|+++..
T Consensus 63 d-------------------Glell~~l~~~~p-~pVIvlS~~ 85 (349)
T 1a2o_A 63 D-------------------GLDFLEKLMRLRP-MPVVMVSSL 85 (349)
T ss_dssp C-------------------HHHHHHHHHHSSC-CCEEEEECC
T ss_pred C-------------------HHHHHHHHHhcCC-CcEEEEECC
Confidence 1 1245667777776 777777753
No 132
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=38.84 E-value=46 Score=24.42 Aligned_cols=67 Identities=10% Similarity=-0.134 Sum_probs=35.3
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCc--EEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccC
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKAD--VLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGA 74 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~--v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ 74 (247)
.|+.+||.+. .|.-...-...|.+.+. .+++ +...++-+..-....+.+.+.... .+.|+|+...|+
T Consensus 7 ~IIttGdEl~-~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~---~~~DlVitTGGt 76 (195)
T 1di6_A 7 GLVSISDRAS-SGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDE---MSCHLVLTTGGT 76 (195)
T ss_dssp EEEEEECC--------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHT---SCCSEEEEESCC
T ss_pred EEEEECCCCC-CCeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhc---CCCCEEEECCCC
Confidence 5788899998 44332333344555442 1244 445566666655555556555431 258999888776
No 133
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=38.16 E-value=64 Score=22.03 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=29.7
Q ss_pred eEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCC--CCchHHHHHHhhhhcCCCCCCCCcEEEEEc
Q 025869 4 QIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYG--GYNTRWALFLLHHIFPLDNSNPPVATTIFF 72 (247)
Q Consensus 4 ~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~--G~~t~~~~~~l~~~~~~~~~~~~d~vii~~ 72 (247)
+|.++|-|-.. +.+...+.+.+. .++++++..-. +..... ...+..+.+ ....+|+++|+.
T Consensus 15 ~vaVvGas~~~-----g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G-~~~~~sl~e--l~~~vDlavi~v 78 (140)
T 1iuk_A 15 TIAVLGAHKDP-----SRPAHYVPRYLREQGYRVLPVNPRFQGEELFG-EEAVASLLD--LKEPVDILDVFR 78 (140)
T ss_dssp EEEEETCCSST-----TSHHHHHHHHHHHTTCEEEEECGGGTTSEETT-EECBSSGGG--CCSCCSEEEECS
T ss_pred EEEEECCCCCC-----CChHHHHHHHHHHCCCEEEEeCCCcccCcCCC-EEecCCHHH--CCCCCCEEEEEe
Confidence 79999987652 245555555442 23556554333 322211 011111111 123689988864
No 134
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=38.13 E-value=83 Score=20.60 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=41.7
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++.|+-.. ...+...+.. ++.+.. .. +...+...+ .. ...||+|++.+..-|-
T Consensus 6 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~~---~~~~a~~~l---~~---~~~~dlvi~D~~l~~~---- 63 (140)
T 3h5i_A 6 KKILIVEDSKFQ--------AKTIANILNKYGYTVEI-AL---TGEAAVEKV---SG---GWYPDLILMDIELGEG---- 63 (140)
T ss_dssp CEEEEECSCHHH--------HHHHHHHHHHTTCEEEE-ES---SHHHHHHHH---HT---TCCCSEEEEESSCSSS----
T ss_pred cEEEEEeCCHHH--------HHHHHHHHHHcCCEEEE-ec---ChHHHHHHH---hc---CCCCCEEEEeccCCCC----
Confidence 489999988763 2344444421 244432 11 223333332 22 1379999996543220
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
.+. .++++.+++. |.+++|+++...
T Consensus 64 -------~~g-------~~~~~~l~~~-~~~~ii~ls~~~ 88 (140)
T 3h5i_A 64 -------MDG-------VQTALAIQQI-SELPVVFLTAHT 88 (140)
T ss_dssp -------CCH-------HHHHHHHHHH-CCCCEEEEESSS
T ss_pred -------CCH-------HHHHHHHHhC-CCCCEEEEECCC
Confidence 011 1344445544 577788887654
No 135
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=38.07 E-value=1.1e+02 Score=21.99 Aligned_cols=81 Identities=14% Similarity=0.023 Sum_probs=45.6
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
|..+|+++.|+-.. ...+...+...-.+. ... +... .+..+ ..||+|++-+..-|..
T Consensus 1 Mm~~ilivdd~~~~--------~~~l~~~L~~~~~v~-~~~---~~~~---al~~~------~~~dlvllD~~lp~~~-- 57 (220)
T 1p2f_A 1 MMWKIAVVDDDKNI--------LKKVSEKLQQLGRVK-TFL---TGED---FLNDE------EAFHVVVLDVMLPDYS-- 57 (220)
T ss_dssp CCEEEEEECSCHHH--------HHHHHHHHTTTEEEE-EES---SHHH---HHHCC------SCCSEEEEESBCSSSB--
T ss_pred CCceEEEEeCCHHH--------HHHHHHHHHhCCCEE-EEC---CHHH---HHHhc------CCCCEEEEeCCCCCCC--
Confidence 56789999988763 345555554221111 111 2222 22222 2799999955332221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
--++++.+++..|.+++++++...
T Consensus 58 -----------------g~~~~~~lr~~~~~~~ii~lt~~~ 81 (220)
T 1p2f_A 58 -----------------GYEICRMIKETRPETWVILLTLLS 81 (220)
T ss_dssp -----------------HHHHHHHHHHHCTTSEEEEEESCC
T ss_pred -----------------HHHHHHHHHhcCCCCcEEEEEcCC
Confidence 125677777777888899887744
No 136
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=37.91 E-value=1.2e+02 Score=22.15 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~p 121 (247)
++++.+++..|.++|++++...
T Consensus 64 ~~~~~lr~~~~~~~ii~lt~~~ 85 (225)
T 3c3w_A 64 ELCRDLLSRMPDLRCLILTSYT 85 (225)
T ss_dssp HHHHHHHHHCTTCEEEEGGGSS
T ss_pred HHHHHHHHhCCCCcEEEEECCC
Confidence 5667777778888888887643
No 137
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=37.90 E-value=69 Score=20.58 Aligned_cols=82 Identities=12% Similarity=-0.032 Sum_probs=44.5
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcc-cccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAND-AALF 80 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND-~~~~ 80 (247)
.+|+++.|.-.. ...+...+. .++.+.. . .+.......+... .+||+|++.+...| ..
T Consensus 6 ~~ilivdd~~~~--------~~~l~~~L~~~g~~v~~-~---~~~~~a~~~l~~~------~~~dlvi~d~~l~~~~~-- 65 (132)
T 2rdm_A 6 VTILLADDEAIL--------LLDFESTLTDAGFLVTA-V---SSGAKAIEMLKSG------AAIDGVVTDIRFCQPPD-- 65 (132)
T ss_dssp CEEEEECSSHHH--------HHHHHHHHHHTTCEEEE-E---SSHHHHHHHHHTT------CCCCEEEEESCCSSSSC--
T ss_pred ceEEEEcCcHHH--------HHHHHHHHHHcCCEEEE-E---CCHHHHHHHHHcC------CCCCEEEEeeeCCCCCC--
Confidence 389999888663 233444442 2244432 1 1233333333321 26899999654332 21
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
-.++++.+++..+.+++++++...
T Consensus 66 -----------------g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 66 -----------------GWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp -----------------HHHHHHHHHHHCTTCCEEEEESSC
T ss_pred -----------------HHHHHHHHHhcCCCCCEEEEeCCc
Confidence 124667777777788888887643
No 138
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=37.68 E-value=45 Score=26.45 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=31.5
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
...|+||+..|..-.. +....--...-..-++.+.+.+.+..|++.+++++.|
T Consensus 73 ~~aDvVvi~ag~~~~~-----g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 125 (317)
T 3d0o_A 73 HDADLVVICAGAAQKP-----GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125 (317)
T ss_dssp TTCSEEEECCCCCCCT-----TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred CCCCEEEECCCCCCCC-----CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 4679999988773221 0000000122334567788888888899988886643
No 139
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Probab=37.43 E-value=1.1e+02 Score=24.56 Aligned_cols=53 Identities=8% Similarity=0.002 Sum_probs=32.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC-eEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM-LVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~-~ivl~~~~ 120 (247)
.+.|+||+..|..... +....--.+.-.+-++.+++.+++..|+. .+++++.|
T Consensus 78 ~daDvVvitAg~prkp-----G~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP 131 (333)
T 5mdh_A 78 KDLDVAILVGSMPRRD-----GMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP 131 (333)
T ss_dssp TTCSEEEECCSCCCCT-----TCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 4679999887754321 11111123344555788888999998876 46666643
No 140
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=37.33 E-value=52 Score=21.51 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=13.7
Q ss_pred HHHHHHHHhCC-CCeEEEEcCC
Q 025869 100 IMVQHLKRLSP-IMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~~p-~~~ivl~~~~ 120 (247)
++++.+++. + .++||+++..
T Consensus 75 ~~~~~l~~~-~~~~~ii~ls~~ 95 (137)
T 2pln_A 75 SFVSRIKEK-HSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHH-STTSEEEEEESS
T ss_pred HHHHHHHhc-CCCccEEEEeCC
Confidence 456666666 6 7888888763
No 141
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=37.21 E-value=1.2e+02 Score=22.35 Aligned_cols=65 Identities=6% Similarity=-0.102 Sum_probs=41.5
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEE--EccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTI--FFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii--~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
.++++++.|..= .... ......+. +||+|.+ +. ........+.++++.+++.+
T Consensus 119 ~G~~Vi~LG~~v-p~e~---iv~~~~~~----~~d~v~l~~S~-----------------l~~~~~~~~~~~i~~l~~~~ 173 (215)
T 3ezx_A 119 NGFQIVDLGVDV-LNEN---VVEEAAKH----KGEKVLLVGSA-----------------LMTTSMLGQKDLMDRLNEEK 173 (215)
T ss_dssp TSCEEEECCSSC-CHHH---HHHHHHHT----TTSCEEEEEEC-----------------SSHHHHTHHHHHHHHHHHTT
T ss_pred CCCeEEEcCCCC-CHHH---HHHHHHHc----CCCEEEEEchh-----------------cccCcHHHHHHHHHHHHHcC
Confidence 448899998853 3332 23333433 8999988 53 11233457889999999987
Q ss_pred C--CCeEEEEcCCC
Q 025869 110 P--IMLVVLITPPP 121 (247)
Q Consensus 110 p--~~~ivl~~~~p 121 (247)
+ +++|++-+.+.
T Consensus 174 ~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 174 LRDSVKCMFGGAPV 187 (215)
T ss_dssp CGGGSEEEEESSSC
T ss_pred CCCCCEEEEECCCC
Confidence 6 66666666543
No 142
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=37.05 E-value=26 Score=28.36 Aligned_cols=73 Identities=12% Similarity=-0.031 Sum_probs=36.6
Q ss_pred EecCCC-CCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEE
Q 025869 37 LLRGYG-GYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVV 115 (247)
Q Consensus 37 ~n~g~~-G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~iv 115 (247)
+|..+. |.+....+..++.+++.....+||+|++..|. |....+..+ ....+.+.|.. +.+.+++. +.+++
T Consensus 245 vNvpL~~g~~d~~y~~~~~~~l~~l~~f~Pd~ivvsaG~-D~~~~Dplg-~~~lt~~~~~~----~~~~l~~~--~~~~v 316 (341)
T 3q9b_A 245 ANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGV-DTFEQDPIS-FFKLTSPDYIT----MGRTIAAS--GVPLL 316 (341)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHHHHHHHTCSCEEEEECC-TTBTTCTTC-CCBBCTTHHHH----HHHHHHTT--SSCEE
T ss_pred EeeecCCCCChHHHHHHHHHHHHHHHhhCCCEEEEeCCc-cccCCCCCC-CccCCHHHHHH----HHHHHHHh--CCCEE
Confidence 454443 22333333444443332224589999999998 443333222 23345555543 55566655 33355
Q ss_pred EE
Q 025869 116 LI 117 (247)
Q Consensus 116 l~ 117 (247)
++
T Consensus 317 ~v 318 (341)
T 3q9b_A 317 VV 318 (341)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 143
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=36.75 E-value=87 Score=24.88 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=31.6
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPV 122 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~ 122 (247)
..|+||+..|........ ...-...-..-++.+++.+++.+|++.+++.+ .|+
T Consensus 76 gaDvVi~~ag~~~~~g~~-----r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S-NPv 128 (326)
T 1smk_A 76 GMDLIIVPAGVPRKPGMT-----RDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS-NPV 128 (326)
T ss_dssp TCSEEEECCCCCCCSSCC-----CSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC-SSH
T ss_pred CCCEEEEcCCcCCCCCCC-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC-Cch
Confidence 579999988865432100 00001223345778888888888888666654 443
No 144
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=36.43 E-value=1.5e+02 Score=23.00 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=42.9
Q ss_pred cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q 025869 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (247)
Q Consensus 33 ~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~ 112 (247)
.+.+++-|++|.+.. ..+.+.. |+..++.+|-++...+. ..+.++..+...++++.+.+.. ++
T Consensus 23 ~IgvfDSGvGGltv~---~~i~~~l-------P~~~~iy~~D~~~~PyG------~~s~~~i~~~~~~i~~~ll~~~-g~ 85 (285)
T 2jfn_A 23 TVLVFDSGVGGLSVY---DEIRHLL-------PDLHYIYAFDNVAFPYG------EKSEAFIVERVVAIVTAVQERY-PL 85 (285)
T ss_dssp EEEEEESSSTHHHHH---HHHHHHS-------TTSEEEEEECTTTCCTT------TSCHHHHHHHHHHHHHHHHHHS-CC
T ss_pred cEEEEeCCccHHHHH---HHHHHhC-------CCCCeEEeeccCCCCCc------cCCHHHHHHHHHHHHHHHHHhC-CC
Confidence 367888888874433 3333333 45556677766554321 1367778888888888776532 56
Q ss_pred eEEEEcC
Q 025869 113 LVVLITP 119 (247)
Q Consensus 113 ~ivl~~~ 119 (247)
+.+++..
T Consensus 86 d~IviaC 92 (285)
T 2jfn_A 86 ALAVVAC 92 (285)
T ss_dssp SEEEECC
T ss_pred CEEEEEC
Confidence 6777765
No 145
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}
Probab=35.95 E-value=59 Score=25.67 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=31.5
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHH---HHHHHHHHHHhCCCCeEEEEcC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDN---LKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~---l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.+.|+||+..|..-.. + ....+.+..+ +.++++.+.+..|++.+++++.
T Consensus 66 ~~aD~Vi~~ag~~~k~-----G---~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 66 RGSDIVLVTAGIGRKP-----G---MTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp TTCSEEEECCSCCCCS-----S---CCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEeCCCCCCC-----C---CcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4679999988764321 0 0123333333 7778888888889998777655
No 146
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=35.65 E-value=1e+02 Score=20.96 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=13.6
Q ss_pred HHHHHHHHhCCCCeEEEEcCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~ 120 (247)
++++.+++..+ .++|+++..
T Consensus 88 ~l~~~lr~~~~-~~ii~~s~~ 107 (164)
T 3t8y_A 88 EALKLIMKKAP-TRVIMVSSL 107 (164)
T ss_dssp HHHHHHHHHSC-CEEEEEESS
T ss_pred HHHHHHHhcCC-ceEEEEecC
Confidence 56677777777 667777653
No 147
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=35.30 E-value=2.3e+02 Score=24.78 Aligned_cols=65 Identities=6% Similarity=-0.064 Sum_probs=43.7
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ 111 (247)
.+++|++.|.. ........ ..... ++|+|.++.- .......+..+++.+++.+++
T Consensus 125 ~G~eVi~LG~~-vP~e~iv~---aa~~~----~~diVgLS~l-----------------~t~~~~~m~~~i~~Lr~~g~~ 179 (579)
T 3bul_A 125 NNYEIVDLGVM-VPAEKILR---TAKEV----NADLIGLSGL-----------------ITPSLDEMVNVAKEMERQGFT 179 (579)
T ss_dssp TTCEEEECCSS-BCHHHHHH---HHHHH----TCSEEEEECC-----------------STHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEECCCC-CCHHHHHH---HHHHc----CCCEEEEEec-----------------CCCCHHHHHHHHHHHHHcCCC
Confidence 45899999987 34443333 33322 7899888641 122355788999999999888
Q ss_pred CeEEEEcCCC
Q 025869 112 MLVVLITPPP 121 (247)
Q Consensus 112 ~~ivl~~~~p 121 (247)
++|++.+.+.
T Consensus 180 i~ViVGGa~~ 189 (579)
T 3bul_A 180 IPLLIGGATT 189 (579)
T ss_dssp SCEEEESTTC
T ss_pred CeEEEEcccc
Confidence 8887777654
No 148
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Probab=35.11 E-value=41 Score=26.67 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=31.2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCC-hhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVP-VEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~-~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
...|+||+..|..-. ++.+ .+.+ ..-++.+++.+.+..|++.+++++.|
T Consensus 66 ~~aD~Vii~ag~~~~---------~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 118 (310)
T 2xxj_A 66 EGARAVVLAAGVAQR---------PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNP 118 (310)
T ss_dssp TTEEEEEECCCCCCC---------TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEECCCCCCC---------CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence 356888888876421 1112 2222 33477788888888999988876543
No 149
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*
Probab=34.71 E-value=48 Score=26.13 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=30.5
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCC-ChhHHHHH---HHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHV-PVEEYGDN---LKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~-~~~~~~~~---l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+|+|..|..=- ++. ..+.+..| ++.+.+.+.+..|++.+++++.|
T Consensus 68 ~~aDvVvitAG~prk---------pGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNP 120 (294)
T 2x0j_A 68 KGSEIIVVTAGLARK---------PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120 (294)
T ss_dssp TTCSEEEECCCCCCC---------SSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred CCCCEEEEecCCCCC---------CCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 456888887774321 222 33334333 56777788888999976666654
No 150
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=34.18 E-value=71 Score=25.01 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=35.7
Q ss_pred HHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 49 ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 49 ~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
....++.+.. -+.+-.|++|+||+...-... ....-..+...+.+++..+++.+
T Consensus 178 av~n~deIaa-----~~~vD~l~iG~~DLs~~lg~~--~~~~~p~v~~a~~~iv~aaraaG 231 (287)
T 2v5j_A 178 AMKNLPQILD-----VEGVDGVFIGPADLSADMGYA--GNPQHPEVQAAIEQAIVQIRESG 231 (287)
T ss_dssp HHHTHHHHHT-----STTEEEEEECHHHHHHHTTST--TCCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-----cCCCCEEEECHHHHHHHhCCC--CCCCCHHHHHHHHHHHHHHHHcC
Confidence 3445555553 467888999999986543211 11233567788999999999984
No 151
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*
Probab=33.73 E-value=41 Score=26.97 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=28.8
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
..+.|+||+..|..-.- + ....+.+.. -++.+.+.+.+..|++.+++++.|
T Consensus 74 ~~~aDiVvi~ag~~~kp-----G---~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP 127 (326)
T 3vku_A 74 AKDADLVVITAGAPQKP-----G---ETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP 127 (326)
T ss_dssp GTTCSEEEECCCCC------------------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred hcCCCEEEECCCCCCCC-----C---chHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence 34679999988764211 0 012233333 367888888888999977777654
No 152
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=33.61 E-value=1.3e+02 Score=21.49 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=45.9
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhccc--CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCRK--ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~--~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
.+|+++.|+-. ....+...+... +.++....+ ...+...+.. . +||+|++-+..-+..
T Consensus 6 ~~ilivdd~~~--------~~~~l~~~L~~~~~~~vv~~~~~---~~~al~~~~~---~----~~dlvllD~~lp~~~-- 65 (215)
T 1a04_A 6 ATILLIDDHPM--------LRTGVKQLISMAPDITVVGEASN---GEQGIELAES---L----DPDLILLDLNMPGMN-- 65 (215)
T ss_dssp EEEEEECSCHH--------HHHHHHHHHTTCTTEEEEEEESS---HHHHHHHHHH---H----CCSEEEEETTSTTSC--
T ss_pred eEEEEECCCHH--------HHHHHHHHHhcCCCcEEEEEeCC---HHHHHHHHHh---c----CCCEEEEeCCCCCCc--
Confidence 47888888866 234555555422 333222222 2223333322 2 689999954332211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
--++++.+++..|..+|++++...
T Consensus 66 -----------------g~~~~~~lr~~~~~~~ii~ls~~~ 89 (215)
T 1a04_A 66 -----------------GLETLDKLREKSLSGRIVVFSVSN 89 (215)
T ss_dssp -----------------HHHHHHHHHHSCCCSEEEEEECCC
T ss_pred -----------------HHHHHHHHHHhCCCCcEEEEECCC
Confidence 125677788888888888887743
No 153
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=33.59 E-value=73 Score=18.56 Aligned_cols=63 Identities=14% Similarity=0.291 Sum_probs=36.0
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCe
Q 025869 89 VPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPF 168 (247)
Q Consensus 89 ~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~ 168 (247)
-+.+.|.+.+.+++++.|+.. ++.-+-+......- ...+..++ ......+...++|+++++.+
T Consensus 10 ddleafekalkemirqarkfa-gtvtytldgndlei-------------ritgvpeq---vrkelakeaerlakefnitv 72 (85)
T 2kl8_A 10 DDLEAFEKALKEMIRQARKFA-GTVTYTLDGNDLEI-------------RITGVPEQ---VRKELAKEAERLAKEFNITV 72 (85)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT-CEEEEEECSSCEEE-------------EEESCCHH---HHHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHHHHHHhhc-ceEEEEecCCeeEE-------------EEecChHH---HHHHHHHHHHHHHHhcCeEE
Confidence 367889999999999998753 44333333221100 01111222 23355556677788888754
No 154
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=32.78 E-value=94 Score=19.59 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=40.4
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+++|+++.|+-.. ...+...+. .++.+.. .. +.......+.. . +||++++.+..-+.
T Consensus 3 ~~~ilivdd~~~~--------~~~l~~~l~~~~~~v~~-~~---~~~~a~~~~~~---~----~~dlvi~D~~l~~~--- 60 (123)
T 1xhf_A 3 TPHILIVEDELVT--------RNTLKSIFEAEGYDVFE-AT---DGAEMHQILSE---Y----DINLVIMDINLPGK--- 60 (123)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHTTTCEEEE-ES---SHHHHHHHHHH---S----CCSEEEECSSCSSS---
T ss_pred CceEEEEeCCHHH--------HHHHHHHHhhCCcEEEE-eC---CHHHHHHHHhc---C----CCCEEEEcCCCCCC---
Confidence 4589999988763 234444443 1233321 11 22333333322 2 68999984422211
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
+. .++++.+++. +..++++++..
T Consensus 61 ---------~g-------~~~~~~l~~~-~~~~ii~~s~~ 83 (123)
T 1xhf_A 61 ---------NG-------LLLARELREQ-ANVALMFLTGR 83 (123)
T ss_dssp ---------CH-------HHHHHHHHHH-CCCEEEEEESC
T ss_pred ---------CH-------HHHHHHHHhC-CCCcEEEEECC
Confidence 11 1345555555 57778877663
No 155
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=32.50 E-value=93 Score=24.62 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=29.8
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCC-hhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVP-VEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~-~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|+.-- ++.. .+.+ ..-+..+++.+.+..|++.+++.+.|
T Consensus 73 ~~aDvVii~~g~p~k---------~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP 125 (318)
T 1y6j_A 73 KDCDVIVVTAGANRK---------PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP 125 (318)
T ss_dssp TTCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred CCCCEEEEcCCCCCC---------CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 467999998876321 1111 1222 23377888888888899987776543
No 156
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=32.07 E-value=1.6e+02 Score=21.94 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~p 121 (247)
++++.+++ .|.++||+++...
T Consensus 98 ~l~~~lr~-~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 98 DVVQRLRK-NSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHT-TCCCCEEEEESCC
T ss_pred HHHHHHHc-CCCCCEEEEECCC
Confidence 56666776 5678888887744
No 157
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
Probab=31.94 E-value=1.2e+02 Score=24.15 Aligned_cols=49 Identities=4% Similarity=0.087 Sum_probs=32.2
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhH----HHHHHHHHHHHHHHhC-CCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEE----YGDNLKIMVQHLKRLS-PIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~----~~~~l~~~i~~~~~~~-p~~~ivl~~~~ 120 (247)
...|+||+..|.+-.. +.+... -..-++.+++.+++.. |++.+++++.|
T Consensus 82 ~~aD~Vi~~ag~~~~~---------g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNP 135 (329)
T 1b8p_A 82 KDADVALLVGARPRGP---------GMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNP 135 (329)
T ss_dssp TTCSEEEECCCCCCCT---------TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 3679999988865421 122222 2334778888898885 89888888743
No 158
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Probab=31.14 E-value=1.3e+02 Score=23.78 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=31.0
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
..+.|+||+..|..-.. +....--...-..-+..+++.+.+..|++.+++.+.
T Consensus 72 l~~aDvViia~~~~~~~-----g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN 124 (316)
T 1ldn_A 72 CRDADLVVICAGANQKP-----GETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (316)
T ss_dssp TTTCSEEEECCSCCCCT-----TTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred hCCCCEEEEcCCCCCCC-----CCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 34679999988764321 100000122233456777888888889887766644
No 159
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=31.03 E-value=68 Score=21.29 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=35.0
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
+++=|+|.....|.. ...+.+.|...|+..|+..|+. +.+-||+..|
T Consensus 31 rygGV~Vd~~~l~~~--------~~~d~~~F~~~L~~SL~~Wr~~--gk~~IWlklp 77 (113)
T 3fxt_A 31 RFGGISVRLARLDAL--------DRLDAAAFQKGLQAAVQQWRSE--GRTAVWLHIP 77 (113)
T ss_dssp TTSCEEEEHHHHTTT--------SCBCHHHHHHHHHHHHHHHHHT--TCCEEEEEEE
T ss_pred CcCCEEEeCCccCCc--------CcCCHHHHHHHHHHHHHHHHHc--CCeeEEEEcC
Confidence 566677766554432 1247899999999999999999 5668888773
No 160
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=30.78 E-value=1e+02 Score=24.17 Aligned_cols=92 Identities=7% Similarity=-0.039 Sum_probs=46.0
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcccCcEE------e-cCCCCC-----chHHHHHHhhhhcCCCCCCCCcEEE
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVL------L-RGYGGY-----NTRWALFLLHHIFPLDNSNPPVATT 69 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~------n-~g~~G~-----~t~~~~~~l~~~~~~~~~~~~d~vi 69 (247)
+++|+.|.|+.. .|+.+..-.-..-..++-.+... | .|++.+ +..+....++.+.......++|.|.
T Consensus 3 ~~~VLsI~~~~~-~G~~G~~aa~~~l~~~G~~v~~~~T~~~Snhtg~~~~~g~~~~~~ql~~~~~~~~~~~~~~~~daV~ 81 (300)
T 3zs7_A 3 EKTVLSIQSFVT-HGYVGNKAATFPLQLHGFDVDGINTVCLSNHSGYPVIRGHRMSLQEYDELMEGVRANNFLSNYRYIL 81 (300)
T ss_dssp CCEEEEEEEEES-SSSCHHHHHHHHHHHTTCEEEEEEEEEESSCTTSSCCCEEECCHHHHHHHHHHHHHTTCGGGCSEEE
T ss_pred CCeEEEEeCccC-CCcchHHHHHHHHHHcCCeeEEeeeEEecCCCCCCCcCCCcCCHHHHHHHHHHHHhcCCcccCCEEE
Confidence 468999999999 44322111001112233111111 2 233332 2244445555554431112577765
Q ss_pred EEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q 025869 70 IFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP 110 (247)
Q Consensus 70 i~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p 110 (247)
+.+ ....+..+.+.++++.+++.+|
T Consensus 82 tG~----------------l~s~~~i~~v~~~l~~~k~~~~ 106 (300)
T 3zs7_A 82 TGY----------------INNVDIIGRIRDTLKEVRELRE 106 (300)
T ss_dssp ECC----------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ECC----------------CCCHHHHHHHHHHHHHHHhhCc
Confidence 521 2445567778888888887754
No 161
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=30.74 E-value=46 Score=26.61 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=30.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCC-hhH---HHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVP-VEE---YGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~-~~~---~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
...|+||+..|..-.. +.+ .+. -..-++.+++.+.+..|++.+++++.|
T Consensus 75 ~~aDvVii~ag~~~k~---------g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 127 (326)
T 2zqz_A 75 KDADLVVITAGAPQKP---------GETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP 127 (326)
T ss_dssp GGCSEEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred CCCCEEEEcCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 3578999988764221 111 122 234467788888888999988887543
No 162
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=30.64 E-value=1.3e+02 Score=24.54 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
..+||+||+..|. |....+..+ ....+.+.+. ++.+.+++. +.+++++.-
T Consensus 245 ~f~Pd~ivvsaG~-D~~~~Dplg-~~~lt~~g~~----~~~~~~~~~--~~p~v~~~e 294 (367)
T 3max_A 245 MYQPSAVVLQCGA-DSLSGDRLG-CFNLTVKGHA----KCVEVVKTF--NLPLLMLGG 294 (367)
T ss_dssp HHCCSEEEEECCG-GGBTTCSSC-CCCBCHHHHH----HHHHHHHTT--CCCEEEECC
T ss_pred HhCCCEEEEECCc-cCcCCCCCC-CeeeCHHHHH----HHHHHHHhc--CCCEEEEeC
Confidence 3589999999998 544433322 2334555544 456666665 445666543
No 163
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=30.40 E-value=1.6e+02 Score=21.46 Aligned_cols=65 Identities=12% Similarity=-0.053 Sum_probs=39.5
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC--
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS-- 109 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-- 109 (247)
.++++++.|.. .......+ ..... +||+|.++.- +. .....+.++++.+++.+
T Consensus 115 ~G~~v~~LG~~-vp~~~l~~---~~~~~----~~d~v~lS~~-~~----------------~~~~~~~~~i~~l~~~~~~ 169 (210)
T 1y80_A 115 GGFTVYNLGVD-IEPGKFVE---AVKKY----QPDIVGMSAL-LT----------------TTMMNMKSTIDALIAAGLR 169 (210)
T ss_dssp TTCEEEECCSS-BCHHHHHH---HHHHH----CCSEEEEECC-SG----------------GGTHHHHHHHHHHHHTTCG
T ss_pred CCCEEEECCCC-CCHHHHHH---HHHHc----CCCEEEEecc-cc----------------ccHHHHHHHHHHHHhcCCC
Confidence 34888888864 23333322 22222 7899888752 11 12446889999999876
Q ss_pred CCCeEEEEcCCC
Q 025869 110 PIMLVVLITPPP 121 (247)
Q Consensus 110 p~~~ivl~~~~p 121 (247)
++++|++-+.+.
T Consensus 170 ~~~~v~vGG~~~ 181 (210)
T 1y80_A 170 DRVKVIVGGAPL 181 (210)
T ss_dssp GGCEEEEESTTC
T ss_pred CCCeEEEECCCC
Confidence 357777776643
No 164
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=30.38 E-value=1.3e+02 Score=20.48 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCCCeee
Q 025869 155 RQCIETAKDLGVPFID 170 (247)
Q Consensus 155 ~~~~~~a~~~~v~~vD 170 (247)
+.+.+.|+++|+.++-
T Consensus 114 ~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 114 REASKKADEAGLIIVA 129 (144)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCEEEc
Confidence 4455667888888873
No 165
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=30.13 E-value=1.3e+02 Score=20.34 Aligned_cols=64 Identities=9% Similarity=-0.145 Sum_probs=39.5
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSP- 110 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p- 110 (247)
.++++++.|.. .+.... .....+. ++|+|.++.- .......+.++++.+++.+.
T Consensus 30 ~G~~Vi~lG~~-~p~e~~---v~~a~~~----~~d~v~lS~~-----------------~~~~~~~~~~~i~~l~~~g~~ 84 (137)
T 1ccw_A 30 AGFNVVNIGVL-SPQELF---IKAAIET----KADAILVSSL-----------------YGQGEIDCKGLRQKCDEAGLE 84 (137)
T ss_dssp TTCEEEEEEEE-ECHHHH---HHHHHHH----TCSEEEEEEC-----------------SSTHHHHHTTHHHHHHHTTCT
T ss_pred CCCEEEECCCC-CCHHHH---HHHHHhc----CCCEEEEEec-----------------CcCcHHHHHHHHHHHHhcCCC
Confidence 44889998874 233433 2333333 7899988641 12334567788888888765
Q ss_pred CCeEEEEcCC
Q 025869 111 IMLVVLITPP 120 (247)
Q Consensus 111 ~~~ivl~~~~ 120 (247)
+.+|++-+.+
T Consensus 85 ~i~v~vGG~~ 94 (137)
T 1ccw_A 85 GILLYVGGNI 94 (137)
T ss_dssp TCEEEEEESC
T ss_pred CCEEEEECCC
Confidence 5666666654
No 166
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=29.75 E-value=1.4e+02 Score=20.84 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=25.7
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHh------cccCcEEecCCCCCc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAY------CRKADVLLRGYGGYN 45 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~------~~~~~v~n~g~~G~~ 45 (247)
||.-|+.+|+.+.. +.++...+.+.+ +.++++++.|..|..
T Consensus 1 m~ilVlGiGN~l~g----DDG~G~~v~~~L~~~~~~p~~v~vid~gt~~~~ 47 (162)
T 1cfz_A 1 MRILVLGVGNILLT----DEAIGVRIVEALEQRYILPDYVEILDGGTAGME 47 (162)
T ss_dssp CCEEEEEESCTTBG----GGGHHHHHHHHHHHHEECCTTEEEEEEETCCGG
T ss_pred CCEEEEEECCcccc----cccHHHHHHHHHHhhCCCCCCeEEEECCCCHHH
Confidence 67778888888763 445544444443 335677788877743
No 167
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=29.56 E-value=2.5e+02 Score=23.46 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=77.7
Q ss_pred HHhhhhcCCCCCCCCcEEEEEccCccccccC-CCCC------CCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEc--CCC
Q 025869 51 FLLHHIFPLDNSNPPVATTIFFGANDAALFG-RTSE------RQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLIT--PPP 121 (247)
Q Consensus 51 ~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~-~~~~------~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~--~~p 121 (247)
+.++.++.. ......++=+.+|..|..... .... ....+.+.=...+..+++++++.+|+.+|+... +|.
T Consensus 70 ~il~~lF~~-~Glglsi~R~~IG~~d~s~~~ysy~d~~~d~~l~~f~~~~d~~~~~~~lk~A~~~~~~l~i~aspWSpP~ 148 (447)
T 2wnw_A 70 QFLSLYFSA-QEHNYTLARMPIQSCDFSLGNYAYVDSSADLQQGRLSFSRDEAHLIPLISGALRLNPHMKLMASPWSPPA 148 (447)
T ss_dssp HHHHHHHCT-TTTCCCEEEEEESCCSSSSSCCCSCCSHHHHHTTCCCCHHHHHHTHHHHHHHHHHCTTCEEEEEESCCCG
T ss_pred HHHHHHhcc-CCCceEEEEEeecCCCCCCCcccccCCCCCCccccCCcccchhHHHHHHHHHHHhCCCcEEEEecCCCcH
Confidence 344445543 355788888899998875321 0000 112233333445678899999988887776542 332
Q ss_pred CCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHH---HHhcCCCeeechHHHHhcccccccccccccCCChhHHH
Q 025869 122 VDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIET---AKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNA 198 (247)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~ 198 (247)
..+..... .+ .+ ....+..+.|.+.+.++ .+++|+.+--+ ...++... .....+.|.|+...+
T Consensus 149 wMk~n~~~-----~~---gg--~L~~~~y~~yA~Ylvk~i~~y~~~Gi~i~~i-s~qNEP~~---~~~~~s~~~t~~~~~ 214 (447)
T 2wnw_A 149 FMKTNNDM-----NG---GG--KLRRECYADWADIIINYLLEYRRHGINVQAL-SVQNEPVA---VKTWDSCLYSVEEET 214 (447)
T ss_dssp GGBTTSCS-----BS---CC--BBCGGGHHHHHHHHHHHHHHHHHTTCCCCEE-ESCSSTTC---CCSSBCCBCCHHHHH
T ss_pred HhccCCCc-----CC---CC--cCCHHHHHHHHHHHHHHHHHHHHcCCCeeEE-eeeccCCC---CCCCCcCCCCHHHHH
Confidence 22211000 00 00 00112333333333333 23468763222 22333321 124678999999888
Q ss_pred HHHH-HHHHHHHhcCCC
Q 025869 199 VVHK-EVVEVFSVAGLS 214 (247)
Q Consensus 199 ~iA~-~l~~~l~~~~~~ 214 (247)
.+.+ .|.+.|++.++.
T Consensus 215 ~fik~~L~p~l~~~gl~ 231 (447)
T 2wnw_A 215 AFAVQYLRPRLARQGMD 231 (447)
T ss_dssp HHHHHTHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 7665 888999987653
No 168
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=29.50 E-value=68 Score=24.73 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=34.8
Q ss_pred HHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 49 ALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 49 ~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
....++.+.. .+.+-.|++|+||+...-.. .....-..+...+.+++..+++++
T Consensus 157 av~~~~eIa~-----~~gvd~l~iG~~DL~~~lg~--~~~~~~p~v~~a~~~iv~aa~aaG 210 (267)
T 2vws_A 157 ALDNLDEILD-----VEGIDGVFIGPADLSASLGY--PDNAGHPEVQRIIETSIRRIRAAG 210 (267)
T ss_dssp HHHTHHHHHT-----STTCCEEEECHHHHHHHTTC--SSSCCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-----CCCCCEEEEChHHHHHHhCC--CCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3445555553 35566788899998654211 111233567888899999999994
No 169
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=29.25 E-value=99 Score=20.15 Aligned_cols=80 Identities=10% Similarity=0.049 Sum_probs=41.1
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCcccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALF 80 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~ 80 (247)
+.+|+++.|+-.. ...+...+.. ++.+. ... +.......+. .. +||+|++-+..-+..
T Consensus 4 ~~~Ilivdd~~~~--------~~~l~~~L~~~g~~v~-~~~---~~~~al~~~~---~~----~~dlvllD~~l~~~~-- 62 (136)
T 2qzj_A 4 QTKILIIDGDKDN--------CQKLKGFLEEKGISID-LAY---NCEEAIGKIF---SN----KYDLIFLEIILSDGD-- 62 (136)
T ss_dssp CCEEEEECSCHHH--------HHHHHHHHHTTTCEEE-EES---SHHHHHHHHH---HC----CCSEEEEESEETTEE--
T ss_pred CCeEEEEcCCHHH--------HHHHHHHHHHCCCEEE-EEC---CHHHHHHHHH---hc----CCCEEEEeCCCCCCC--
Confidence 3589999988762 3344444432 23332 111 2233333332 22 689999954332221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 81 GRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
. .++++.+++.. .+++++++..
T Consensus 63 ----------------g-~~l~~~l~~~~-~~~ii~ls~~ 84 (136)
T 2qzj_A 63 ----------------G-WTLCKKIRNVT-TCPIVYMTYI 84 (136)
T ss_dssp ----------------H-HHHHHHHHTTC-CCCEEEEESC
T ss_pred ----------------H-HHHHHHHccCC-CCCEEEEEcC
Confidence 1 13566666654 5667777653
No 170
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A 2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Probab=29.16 E-value=36 Score=23.89 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeec
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDL 171 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~ 171 (247)
+....+.+.++++|+++++.++.+
T Consensus 39 ~~~~~l~~~l~~~~~~~~~~i~a~ 62 (159)
T 2vjv_A 39 AVEMRLKEIIQEVAKELRVEIIEM 62 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHhhccCCEEEEEE
Confidence 456788889999999998877665
No 171
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=28.90 E-value=1.4e+02 Score=24.43 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=39.1
Q ss_pred EEecCCC-CCchHHHHHHhhhhcCC-CCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q 025869 36 VLLRGYG-GYNTRWALFLLHHIFPL-DNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (247)
Q Consensus 36 v~n~g~~-G~~t~~~~~~l~~~~~~-~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ 113 (247)
.+|..+. |.+....+..++..+.. ....+||+||+..|. |....+..+ ....+.+.+. ++.+.+++. +.+
T Consensus 218 ~vNvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~-Da~~~DpLg-~l~Lt~~g~~----~~~~~l~~~--~~p 289 (376)
T 4a69_A 218 CLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGA-DSLGCDRLG-CFNLSIRGHG----ECVEYVKSF--NIP 289 (376)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCG-GGBTTCSSC-CCBBCHHHHH----HHHHHHHTT--CCC
T ss_pred eEeeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcc-cCCCCCccc-CeecCHHHHH----HHHHHHHHc--CCC
Confidence 3454442 33334444444433321 123589999999999 544333322 2334555544 455666665 445
Q ss_pred EEEEcC
Q 025869 114 VVLITP 119 (247)
Q Consensus 114 ivl~~~ 119 (247)
++++.-
T Consensus 290 ~v~v~e 295 (376)
T 4a69_A 290 LLVLGG 295 (376)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 666543
No 172
>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide, hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ...
Probab=28.51 E-value=2.7e+02 Score=23.61 Aligned_cols=155 Identities=10% Similarity=0.056 Sum_probs=75.8
Q ss_pred HHhhhhcCCCCCCCCcEEEEEccCccccccC----C-CC--CCCCCChhHHH-HHHHHHHHHHHHhC-CCCeEEEE--cC
Q 025869 51 FLLHHIFPLDNSNPPVATTIFFGANDAALFG----R-TS--ERQHVPVEEYG-DNLKIMVQHLKRLS-PIMLVVLI--TP 119 (247)
Q Consensus 51 ~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~----~-~~--~~~~~~~~~~~-~~l~~~i~~~~~~~-p~~~ivl~--~~ 119 (247)
+.++.++.. ......++=+.+|..|..... . .+ .....+.+.-. .....+++++++.+ |+.+|+.. ++
T Consensus 103 ~ll~~lF~~-~Glglsi~R~~IG~~d~s~~~ysy~d~~~D~~l~~f~~~~d~~~~~i~~lk~A~~~~~~~lki~aspWSp 181 (497)
T 2nt0_A 103 LLLKSYFSE-EGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTS 181 (497)
T ss_dssp HHHHHHHST-TTTCCCEEEEEESCCSSSSSCCCSCCSTTCTTCTTCCCCHHHHTTHHHHHHHHHHHCSSCCEEEEEESCC
T ss_pred HHHHHhcCC-CCCceEEEEEeecCCCCCCCCccccCCCCCcccCCCCcCccchhhHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 344444543 356788888999998875321 0 00 01122222222 35677888888875 77777765 34
Q ss_pred CCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHH---HhcCCCeeechHHHHhccccc-ccccccccCCChh
Q 025869 120 PPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETA---KDLGVPFIDLWSKMQETEGWQ-KKFLSDGLHLTEE 195 (247)
Q Consensus 120 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~v~~vD~~~~~~~~~~~~-~~~~~Dg~Hp~~~ 195 (247)
|...+..... .+.. .-..+.-....+.|.+.+.++. ++.|+.+--+ ...++..... ......+.|.++.
T Consensus 182 P~wMk~n~~~-----~ggG-~L~~~~~~~~y~~yA~Ylvk~i~~y~~~Gi~i~~i-s~qNEP~~~~~~~~~~~s~~~t~~ 254 (497)
T 2nt0_A 182 PTWLKTNGAV-----NGKG-SLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAV-TAENEPSAGLLSGYPFQCLGFTPE 254 (497)
T ss_dssp CGGGBTTCSS-----SSSC-BBSSCTTSHHHHHHHHHHHHHHHHHHHTTCCCSEE-ESCSSGGGGGSTTCCSSCCBCCHH
T ss_pred cHHHhcCCCc-----CCCC-ccCCccchhHHHHHHHHHHHHHHHHHHcCCCeeEE-eeccCCCcccCCCCCCCCCCcCHH
Confidence 4322211000 0000 0000100013333333333332 3457763222 2233332110 0124578999998
Q ss_pred HHHHHHH-HHHHHHHhcCC
Q 025869 196 GNAVVHK-EVVEVFSVAGL 213 (247)
Q Consensus 196 G~~~iA~-~l~~~l~~~~~ 213 (247)
-.+.+.+ .|.+.|++.++
T Consensus 255 ~~~~fik~~L~p~L~~~gl 273 (497)
T 2nt0_A 255 HQRDFIARDLGPTLANSTH 273 (497)
T ss_dssp HHHHHHHHTHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 8876555 88999988765
No 173
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=28.37 E-value=2.1e+02 Score=22.19 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=42.5
Q ss_pred cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q 025869 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (247)
Q Consensus 33 ~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~ 112 (247)
.+.+++-|++|.+.. ..+.+..+ +..++.+|-++...+. ..+.++..+.+.++++.+.+. ++
T Consensus 24 ~IGvfDsG~Ggltv~---~~i~~~~P-------~~~~iy~~D~~~~Pyg------~~s~~~i~~~~~~~~~~L~~~--g~ 85 (286)
T 2jfq_A 24 PIGVIDSGVGGLTVA---KEIMRQLP-------NETIYYLGDIGRCPYG------PRPGEQVKQYTVEIARKLMEF--DI 85 (286)
T ss_dssp CEEEEESSSTTHHHH---HHHHHHCT-------TCCEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHTTS--CC
T ss_pred cEEEEeCCCCcHHHH---HHHHHHCC-------CccEEEeccCCCCCcC------CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 467888888864332 34444443 3345566655544321 135677888888888888876 66
Q ss_pred eEEEEcC
Q 025869 113 LVVLITP 119 (247)
Q Consensus 113 ~ivl~~~ 119 (247)
+.+++..
T Consensus 86 d~IVIaC 92 (286)
T 2jfq_A 86 KMLVIAC 92 (286)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 6777765
No 174
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}
Probab=28.11 E-value=66 Score=25.96 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=28.7
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHH---HHHHHHHHHHHhCCCCe-EEEEcCC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGD---NLKIMVQHLKRLSPIML-VVLITPP 120 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~---~l~~~i~~~~~~~p~~~-ivl~~~~ 120 (247)
+.|+||+..|..-.- .....+.+.. -++.+++.+.+..|++. +++++.|
T Consensus 76 dADvVvitaG~p~kp--------G~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNP 128 (343)
T 3fi9_A 76 DAKYIVSSGGAPRKE--------GMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128 (343)
T ss_dssp TEEEEEECCC---------------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSS
T ss_pred CCCEEEEccCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCc
Confidence 578999988763211 0112333444 47788888888999986 5555543
No 175
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=27.87 E-value=1.3e+02 Score=22.92 Aligned_cols=65 Identities=11% Similarity=-0.147 Sum_probs=41.5
Q ss_pred ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q 025869 32 RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI 111 (247)
Q Consensus 32 ~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~ 111 (247)
.++++++.|.. ......... .... +||+|.++.-..- ....+.++++.+++.+++
T Consensus 150 ~G~~Vi~LG~~-vp~e~l~~~---~~~~----~~d~V~lS~l~~~-----------------~~~~~~~~i~~l~~~~~~ 204 (258)
T 2i2x_B 150 NGYNVVDLGRD-VPAEEVLAA---VQKE----KPIMLTGTALMTT-----------------TMYAFKEVNDMLLENGIK 204 (258)
T ss_dssp TTCEEEEEEEE-CCSHHHHHH---HHHH----CCSEEEEECCCTT-----------------TTTHHHHHHHHHHTTTCC
T ss_pred CCCEEEECCCC-CCHHHHHHH---HHHc----CCCEEEEEeeccC-----------------CHHHHHHHHHHHHhcCCC
Confidence 44888888876 344433222 2222 7899888753211 123688899999999888
Q ss_pred CeEEEEcCCC
Q 025869 112 MLVVLITPPP 121 (247)
Q Consensus 112 ~~ivl~~~~p 121 (247)
++|++-+.+.
T Consensus 205 ~~v~vGG~~~ 214 (258)
T 2i2x_B 205 IPFACGGGAV 214 (258)
T ss_dssp CCEEEESTTC
T ss_pred CcEEEECccC
Confidence 8777777654
No 176
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=27.73 E-value=1.3e+02 Score=22.60 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=10.1
Q ss_pred CceEEEEccccc
Q 025869 2 RPQIVLFGDSIT 13 (247)
Q Consensus 2 ~~~i~~~GDS~~ 13 (247)
+++|+++-|+..
T Consensus 4 ~~~ILiVdD~~~ 15 (259)
T 3luf_A 4 KQKILIVEDSMT 15 (259)
T ss_dssp CCEEEEECCCHH
T ss_pred CCeEEEEECCHH
Confidence 468999999876
No 177
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=27.66 E-value=58 Score=25.62 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=34.8
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhcccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCc
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYCRKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGAN 75 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~N 75 (247)
+||.|++||+++-.. .|.... +.+...--++..|-|...-. +......... ....+|+|..+..
T Consensus 191 lrPdVV~FGE~lp~~-----~~~~a~-~~~~~aDllLviGTSl~V~P-aa~l~~~a~~----~g~~~v~IN~~~t 254 (290)
T 3u31_A 191 FKPNIILFGEVVSSD-----LLKEAE-EEIAKCDLLLVIGTSSTVST-ATNLCHFACK----KKKKIVEINISKT 254 (290)
T ss_dssp EEEEECCBTSBCCHH-----HHHHHH-HHHHHCSEEEEESCCSCSHH-HHHHHHHHHH----TTCCEEEEESSCC
T ss_pred ECCeEEEcCCCCCHH-----HHHHHH-HHHhcCCEEEEECcCCcchh-HHHHHHHHHH----cCCEEEEECCCCC
Confidence 479999999998741 243322 22322223556777775433 3232222222 2577888887653
No 178
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.48 E-value=1.2e+02 Score=19.35 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=24.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~~ 120 (247)
..||+|++.+...+.. -.++++.+++.. +.+++++++..
T Consensus 54 ~~~dlvi~d~~~~~~~-------------------g~~~~~~l~~~~~~~~~pii~ls~~ 94 (140)
T 1k68_A 54 SRPDLILLXLNLPKKD-------------------GREVLAEIKSDPTLKRIPVVVLSTS 94 (140)
T ss_dssp CCCSEEEECSSCSSSC-------------------HHHHHHHHHHSTTGGGSCEEEEESC
T ss_pred CCCcEEEEecCCCccc-------------------HHHHHHHHHcCcccccccEEEEecC
Confidence 3799999954332221 125666666654 57778888764
No 179
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Probab=27.23 E-value=78 Score=24.85 Aligned_cols=49 Identities=6% Similarity=-0.004 Sum_probs=30.9
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCC-hhHH---HHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVP-VEEY---GDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~-~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
....|+||+..|..... +.. .+.+ ..-++.+++.+++..|++.+++.+.
T Consensus 68 ~~~aDvVi~~ag~~~~~---------g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN 120 (303)
T 1o6z_A 68 TAGSDVVVITAGIPRQP---------GQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (303)
T ss_dssp GTTCSEEEECCCCCCCT---------TCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred hCCCCEEEEcCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 34689999998864321 112 2222 3457778888888888886666544
No 180
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=26.63 E-value=1.3e+02 Score=19.13 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=13.8
Q ss_pred HHHHHHHHh--CCCCeEEEEcCC
Q 025869 100 IMVQHLKRL--SPIMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~--~p~~~ivl~~~~ 120 (247)
++++.+++. .+.+++++++..
T Consensus 68 ~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 68 GLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHHHHhcCccccCCCEEEEeCC
Confidence 456677764 467778877663
No 181
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=26.55 E-value=85 Score=20.04 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcCCC
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~~p 121 (247)
....+..+.+.+++. ++.-++++.|-
T Consensus 36 ~~~~~~~l~~li~e~--~v~~iVvGlP~ 61 (98)
T 1iv0_A 36 LEEDVEALLDFVRRE--GLGKLVVGLPL 61 (98)
T ss_dssp HHHHHHHHHHHHHHH--TCCEEEEECCC
T ss_pred cHHHHHHHHHHHHHc--CCCEEEEeecc
Confidence 345566777777777 44466776653
No 182
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=26.44 E-value=84 Score=24.73 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=28.4
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChh---HHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVE---EYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~---~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.+.|+||+..|..-.. +. ...+ .-..-++++++.+.+..|++.+++.+.
T Consensus 69 ~~aD~Vi~a~g~p~~~-----g~---~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 69 ANSDVIVVTSGAPRKP-----GM---SREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp TTCSEEEECCCC----------------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred CCCCEEEEcCCCCCCC-----CC---CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 4679999988763221 00 1112 223446678888888888886666654
No 183
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=26.38 E-value=2.3e+02 Score=21.96 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=44.0
Q ss_pred CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q 025869 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (247)
Q Consensus 34 ~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ 113 (247)
+.+.+-|++|.+... .+.+.++ .-++ +.+|-|-...+. .-+.++..+.+.++++.+.+. +++
T Consensus 27 IgvfDSGvGGLtv~~---~i~~~lP-----~e~~--iy~~D~a~~PYG------~ks~e~i~~~~~~~~~~L~~~--g~d 88 (274)
T 3uhf_A 27 IGVFDSGVGGLSVLK---SLYEARL-----FDEI--IYYGDTARVPYG------VKDKDTIIKFCLEALDFFEQF--QID 88 (274)
T ss_dssp EEEEESSSTTHHHHH---HHHHTTC-----CSEE--EEEECTTTCCCT------TSCHHHHHHHHHHHHHHHTTS--CCS
T ss_pred EEEEECCCChHHHHH---HHHHHCC-----CCCE--EEEecCCCCCCC------CCCHHHHHHHHHHHHHHHHHC--CCC
Confidence 678899999977653 3333332 2344 445555444321 136788888899999988877 666
Q ss_pred EEEEcC
Q 025869 114 VVLITP 119 (247)
Q Consensus 114 ivl~~~ 119 (247)
.+++..
T Consensus 89 ~IVIAC 94 (274)
T 3uhf_A 89 MLIIAC 94 (274)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 777765
No 184
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=26.32 E-value=2e+02 Score=21.40 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=14.2
Q ss_pred HHHHHHHHhCCCCeEEEEcCCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPPP 121 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~p 121 (247)
++++.+|+..+..+||+++...
T Consensus 190 ~l~~~ir~~~~~~piI~lt~~~ 211 (254)
T 2ayx_A 190 RLTQRIRQLGLTLPVIGVTANA 211 (254)
T ss_dssp HHHHHHHHHHCCSCEEEEESST
T ss_pred HHHHHHHhcCCCCcEEEEECCC
Confidence 3455555555677788887744
No 185
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=26.04 E-value=1.7e+02 Score=23.29 Aligned_cols=53 Identities=11% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCCcEEEEEccCccccccCCCCCCC--CCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQ--HVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~--~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|+--.. +... ....+.. ..-++++++.+.+..|++.+++.+.|
T Consensus 77 ~~aDiVi~a~g~p~~~-----g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP 134 (331)
T 1pzg_A 77 TGADCVIVTAGLTKVP-----GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP 134 (331)
T ss_dssp TTCSEEEECCSCSSCT-----TCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred CCCCEEEEccCCCCCC-----CcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence 3679999988753211 1100 0122222 34477888888888899866666554
No 186
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=25.69 E-value=1.7e+02 Score=23.08 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=30.8
Q ss_pred CCCcEEEEEccCccccccCCCCCC--CCCChhHHH---HHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSER--QHVPVEEYG---DNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~--~~~~~~~~~---~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|.--- ++.. .....+... .-++++++.+.+..|++.+++++.|
T Consensus 71 ~~aD~Vi~a~g~p~k-----~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP 128 (322)
T 1t2d_A 71 AGADVVIVTAGFTKA-----PGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP 128 (322)
T ss_dssp TTCSEEEECCSCSSC-----TTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred CCCCEEEEeCCCCCC-----CCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 467999999875211 1100 000223333 3477788888888899877776553
No 187
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=25.66 E-value=1.8e+02 Score=23.08 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
.+.|+||+..|.--- ++. ...+.. ..-++++++.+.+..|++.+++.+.
T Consensus 81 ~~aD~VI~avg~p~k-----~g~---tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 81 QNSDVVIITAGVPRK-----PNM---TRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp TTCSEEEECCSCCCC-----TTC---CSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCEEEEcCCCCCC-----CCC---chhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 467999998885321 111 122332 3346778888888888886666654
No 188
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=25.45 E-value=2.4e+02 Score=21.89 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=42.5
Q ss_pred cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q 025869 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIM 112 (247)
Q Consensus 33 ~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~ 112 (247)
.+.+++-|++|.+ +...+.+..+ +..++.+|-+....+. ..+.++..+.+.++++.+.+. ++
T Consensus 26 ~IGvfDsG~Gglt---v~~~i~~~~P-------~~~~iy~~D~~~~pyG------~~s~~~i~~~~~~~~~~L~~~--g~ 87 (290)
T 2vvt_A 26 AIGLIDSGVGGLT---VLKEALKQLP-------NERLIYLGDTARCPYG------PRPAEQVVQFTWEMADFLLKK--RI 87 (290)
T ss_dssp CEEEEESSSTTHH---HHHHHHHHCT-------TSCEEEEECTTTCCCT------TSCHHHHHHHHHHHHHHHHTT--TC
T ss_pred cEEEEeCCCcHHH---HHHHHHHHCC-------CccEEEecccccCCCC------CCCHHHHHHHHHHHHHHHHHC--CC
Confidence 3668888999833 2344444443 2234445555543321 135777888888888888877 56
Q ss_pred eEEEEcC
Q 025869 113 LVVLITP 119 (247)
Q Consensus 113 ~ivl~~~ 119 (247)
+.|++..
T Consensus 88 d~IVIAC 94 (290)
T 2vvt_A 88 KMLVIAC 94 (290)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 6777765
No 189
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=25.33 E-value=1.4e+02 Score=23.40 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=26.0
Q ss_pred CCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 64 PPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 64 ~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
+.|+||+..|..-.. +....--...-..-++.+++.+.+..|++.+++++.
T Consensus 67 ~aDvVIi~~~~~~~~-----g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN 117 (304)
T 2v6b_A 67 DAQVVILTAGANQKP-----GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSN 117 (304)
T ss_dssp TCSEEEECC-----------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred CCCEEEEcCCCCCCC-----CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 568888877653211 000011122334456777788887788887666544
No 190
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=25.32 E-value=83 Score=24.01 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=34.7
Q ss_pred HHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q 025869 48 WALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLS 109 (247)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 109 (247)
.....++.+.. -+.+-.+++|+||+...-... ....-..+...+..++..+++.+
T Consensus 156 ~av~~~~eIa~-----~~~vd~l~iG~~DL~~~lg~~--~~~~~p~v~~a~~~iv~aa~a~G 210 (256)
T 1dxe_A 156 QGVDNVDAIAA-----TEGVDGIFVGPSDLAAALGHL--GNASHPDVQKAIQHIFNRASAHG 210 (256)
T ss_dssp HHHHTHHHHHT-----STTCCEEEECHHHHHHHTTCT--TCTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHhC-----CCCCCEEEEChHHHHHHhCCC--CCCCCHHHHHHHHHHHHHHHHhC
Confidence 33444555543 355667888999986543211 11223457788899999999984
No 191
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=25.23 E-value=2.1e+02 Score=23.54 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=37.2
Q ss_pred EecCCC-CCchHHHHHHhhhhcCCC-CCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q 025869 37 LLRGYG-GYNTRWALFLLHHIFPLD-NSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLV 114 (247)
Q Consensus 37 ~n~g~~-G~~t~~~~~~l~~~~~~~-~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~i 114 (247)
+|..+. |.+....+..++..+... ...+||+||+..|. |....+..+ ....+.+.+. ++.+.+++. +.++
T Consensus 227 vNvPL~~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~-Da~~~DpLg-~l~lt~~g~~----~~~~~l~~~--~~p~ 298 (388)
T 3ew8_A 227 VNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGA-DTIAGDPMC-SFNMTPVGIG----KCLKYILQW--QLAT 298 (388)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCS-TTBTTCTTC-CCCBCHHHHH----HHHHHHHTT--CCEE
T ss_pred eeccCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCc-cCCCCCCCC-CCcCCHHHHH----HHHHHHHhc--CCCE
Confidence 454443 333333444443333211 23589999999998 544333322 2334555544 445555554 4445
Q ss_pred EEEc
Q 025869 115 VLIT 118 (247)
Q Consensus 115 vl~~ 118 (247)
+++.
T Consensus 299 l~~~ 302 (388)
T 3ew8_A 299 LILG 302 (388)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6554
No 192
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum}
Probab=25.17 E-value=74 Score=27.25 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=47.1
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhh-hHHHHHHHHHHHHHhcCC
Q 025869 88 HVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNE-MTGVYARQCIETAKDLGV 166 (247)
Q Consensus 88 ~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~v 166 (247)
..+.++|.+...+..+.+|..-|. +-+++|..++......+. ....+. ....... .+.-|-+.+++..++.++
T Consensus 195 ~~t~eEY~~~~~~~AkAmK~vDP~--ikl~GPa~~g~~~y~~~~---~~~~w~-~~~g~~~W~l~~~L~~mk~~~~~~g~ 268 (517)
T 3ik2_A 195 KTKCSEVLDKDTQLAQVVKKIDPA--AETFGPALFGFSAFNDFN---SSPDWS-SVKGNYQWFIDYYLDNMKKNSDAAGK 268 (517)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTT--CEEEEEEECSHHHHHHTT---TCTTHH-HHHTTCSSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCC--cEEEcchhhccccccccc---cccccc-cccCCcchHHHHHHHHHHHhhccCCc
Confidence 368899999999999999999777 566666555444322211 000000 0001111 255667777777777787
Q ss_pred CeeechH
Q 025869 167 PFIDLWS 173 (247)
Q Consensus 167 ~~vD~~~ 173 (247)
.++|..+
T Consensus 269 RLLD~ld 275 (517)
T 3ik2_A 269 RLLDALD 275 (517)
T ss_dssp CCCSEEE
T ss_pred cccceee
Confidence 7666643
No 193
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=24.86 E-value=1.8e+02 Score=20.29 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=23.2
Q ss_pred CCceEEEEcccccccccCCCcHHHHHHHHhc---ccCcEEecCCCCC
Q 025869 1 MRPQIVLFGDSITQQSFGSAGWGAALADAYC---RKADVLLRGYGGY 44 (247)
Q Consensus 1 ~~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~---~~~~v~n~g~~G~ 44 (247)
||.-|+.+|+.+-. +.++...+.+.+. +++++++.|..|.
T Consensus 3 m~ilVlGiGN~L~g----DDG~G~~v~~~L~~~~p~v~vid~Gt~~~ 45 (157)
T 3pu6_A 3 LKKVLLCVGNELRG----DDGVAIALGRLVEEQMPEWSVFFGYDTPE 45 (157)
T ss_dssp CCEEEEEECCTTBG----GGGHHHHHHHHHHHHCTTEEEEEEETCGG
T ss_pred CCEEEEEECCcccc----cccHHHHHHHHHHhhCCCeEEEECCCCHH
Confidence 45567777776652 4455544444442 2567777776554
No 194
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=24.72 E-value=1.6e+02 Score=25.50 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCCee-echHHHHhcccccccccccccCCChhH
Q 025869 151 GVYARQCIETAKDLGVPFI-DLWSKMQETEGWQKKFLSDGLHLTEEG 196 (247)
Q Consensus 151 ~~~~~~~~~~a~~~~v~~v-D~~~~~~~~~~~~~~~~~Dg~Hp~~~G 196 (247)
.+..+.++++|++++++++ +-+-.+. ..+..||+|+.+.-
T Consensus 55 ~~~a~~l~~l~~~~~v~liIND~~dlA------~~~gAdGVHLgq~d 95 (540)
T 3nl6_A 55 IEEALQIKELCHAHNVPLIINDRIDVA------MAIGADGIHVGQDD 95 (540)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSCSHHH------HHTTCSEEEECTTS
T ss_pred HHHHHHHHHHHHhcCCEEEEeCcHHHH------HHcCCCEEEEChhh
Confidence 3566778889999999865 2211111 13457899987644
No 195
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=24.49 E-value=2e+02 Score=23.13 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=41.3
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhcc-cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYCR-KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~-~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
.+|+++-|+-.. ...+...+.. ++.+. ... +...+++.+. .. +||+|++ |+.-+.
T Consensus 6 ~~iLivdD~~~~--------~~~l~~~L~~~g~~v~-~a~---~~~~al~~~~---~~----~~dlvll-----D~~mp~ 61 (394)
T 3eq2_A 6 ATLLIIDDDEVV--------RESLAAYLEDSNFKVL-QAL---NGLQGLQIFE---SE----QPDLVIC-----DLRMPQ 61 (394)
T ss_dssp EEEEEECSCHHH--------HHHHHHHHHHTTEEEE-ECS---SHHHHHHHHH---HS----CCSEEEE-----CCCSSS
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHhCCCEEE-EEC---CHHHHHHHHh---hC----CCCEEEE-----cCCCCC
Confidence 488999888763 2334444421 24443 222 2333333333 22 6999999 443211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+- -++++.+|+..|.++||+++..
T Consensus 62 -------~~G-------~~~~~~lr~~~~~~pii~lt~~ 86 (394)
T 3eq2_A 62 -------IDG-------LELIRRIRQTASETPIIVLSGA 86 (394)
T ss_dssp -------SCT-------HHHHHHHHHTTCCCCEEEC---
T ss_pred -------CCH-------HHHHHHHHhhCCCCcEEEEEcC
Confidence 111 1456667777778888888753
No 196
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=24.35 E-value=1.5e+02 Score=19.32 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=41.0
Q ss_pred CceEEEEcccccccccCCCcHHHHHHHHhcc--cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccc
Q 025869 2 RPQIVLFGDSITQQSFGSAGWGAALADAYCR--KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAAL 79 (247)
Q Consensus 2 ~~~i~~~GDS~~~~g~~~~~~~~~l~~~~~~--~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~ 79 (247)
.++|+++.|+-.. ...+...+.. ++.++.... +...+.+.+... ..||+|++.+...+..
T Consensus 13 ~~~vlivdd~~~~--------~~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~------~~~dlvilD~~l~~~~- 74 (145)
T 3kyj_B 13 PYNVMIVDDAAMM--------RLYIASFIKTLPDFKVVAQAA---NGQEALDKLAAQ------PNVDLILLDIEMPVMD- 74 (145)
T ss_dssp SEEEEEECSCHHH--------HHHHHHHHTTCTTEEEEEEES---SHHHHHHHHHHC------TTCCEEEECTTSCCCT-
T ss_pred CCeEEEEcCCHHH--------HHHHHHHHHhCCCceEEEEEC---CHHHHHHHHhcC------CCCCEEEEeCCCCCCC-
Confidence 4578888887662 4455666643 223222222 223333333331 1689999954333321
Q ss_pred cCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEcC
Q 025869 80 FGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLITP 119 (247)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~~~ 119 (247)
+ .++++.+++..+ .++++++.
T Consensus 75 --------g----------~~~~~~lr~~~~-~~iiil~~ 95 (145)
T 3kyj_B 75 --------G----------MEFLRHAKLKTR-AKICMLSS 95 (145)
T ss_dssp --------T----------CHHHHHHHHHCC-CEEC-CBS
T ss_pred --------H----------HHHHHHHHhcCC-CCeEEEEE
Confidence 0 145566676665 55666665
No 197
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=23.27 E-value=1.4e+02 Score=18.54 Aligned_cols=21 Identities=5% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCCeEEEEcCC
Q 025869 100 IMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 100 ~~i~~~~~~~p~~~ivl~~~~ 120 (247)
++++.+++..+..++++++..
T Consensus 61 ~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 61 SLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHhcCCCCCEEEEecC
Confidence 456677777778888888764
No 198
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=23.02 E-value=1.7e+02 Score=23.82 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=32.4
Q ss_pred CCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEE
Q 025869 62 SNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIMLVVLI 117 (247)
Q Consensus 62 ~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ivl~ 117 (247)
..+||+|++..|.-=.. .+.. +....+.+.|....+.+.+..+... +.+++++
T Consensus 255 ~f~PdlIvvsaG~Da~~-~DpL-g~l~lt~~g~~~~~~~l~~~a~~~~-~g~vv~v 307 (369)
T 1zz1_A 255 AYRPQLIIVGSGFDASM-LDPL-ARMMVTADGFRQMARRTIDCAADIC-DGRIVFV 307 (369)
T ss_dssp HHCCSEEEEEECCTTBT-TCTT-CCCBBCHHHHHHHHHHHHHHHHHHS-TTCEEEE
T ss_pred HcCCCEEEEeCCccCCC-CCCC-CCcccCHHHHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 35899999999885332 2222 2345677788877777777666533 2334444
No 199
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=22.99 E-value=51 Score=22.10 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCeeec
Q 025869 148 EMTGVYARQCIETAKDLGVPFIDL 171 (247)
Q Consensus 148 ~~~~~~~~~~~~~a~~~~v~~vD~ 171 (247)
+....+.+.++++++++++.++.+
T Consensus 31 ~~~~~l~~~l~~~~~~~~~~i~a~ 54 (133)
T 2f5g_A 31 EIAEYTKEVLKSIAEELGCEIIAL 54 (133)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCeEEeee
Confidence 455678888999999988877655
No 200
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=22.75 E-value=2e+02 Score=20.00 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=10.0
Q ss_pred CceEEEEccccc
Q 025869 2 RPQIVLFGDSIT 13 (247)
Q Consensus 2 ~~~i~~~GDS~~ 13 (247)
.++|+++|++-+
T Consensus 17 ~~ki~v~G~~~~ 28 (199)
T 4bas_A 17 KLQVVMCGLDNS 28 (199)
T ss_dssp EEEEEEECCTTS
T ss_pred CcEEEEECCCCC
Confidence 358999999877
No 201
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=22.54 E-value=2e+02 Score=19.98 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=8.9
Q ss_pred eEEEEccccc
Q 025869 4 QIVLFGDSIT 13 (247)
Q Consensus 4 ~i~~~GDS~~ 13 (247)
+|+++|++-+
T Consensus 25 ki~v~G~~~~ 34 (191)
T 3dz8_A 25 KLLIIGNSSV 34 (191)
T ss_dssp EEEEEESTTS
T ss_pred EEEEECCCCc
Confidence 7999999877
No 202
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=22.52 E-value=2.6e+02 Score=21.39 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=43.2
Q ss_pred CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q 025869 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (247)
Q Consensus 34 ~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ 113 (247)
+.+++-|++|.+.. ..+.+..+ +-+ ++.+|-++...+. ..+.++..+.+.++++.+.+. +++
T Consensus 10 IgvfDSGvGGltv~---~~i~~~lP-----~~~--~iy~~D~~~~PyG------~~s~~~i~~~~~~~~~~L~~~--g~d 71 (276)
T 2dwu_A 10 IGVLDSGVGGLTVA---SEIIRQLP-----KES--ICYIGDNERCPYG------PRSVEEVQSFVFEMVEFLKQF--PLK 71 (276)
T ss_dssp EEEEESSSTTHHHH---HHHHHHCT-----TSC--EEEEECGGGCCCT------TSCHHHHHHHHHHHHHHHTTS--CEE
T ss_pred EEEEeCCcchHHHH---HHHHHhCC-----CCc--EEEccCCCCCCCC------CCCHHHHHHHHHHHHHHHHHC--CCC
Confidence 66888899986554 23334443 233 4456655544321 236777888888888888776 677
Q ss_pred EEEEcC
Q 025869 114 VVLITP 119 (247)
Q Consensus 114 ivl~~~ 119 (247)
.+++..
T Consensus 72 ~IViAC 77 (276)
T 2dwu_A 72 ALVVAC 77 (276)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 887766
No 203
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=22.22 E-value=59 Score=22.62 Aligned_cols=105 Identities=13% Similarity=0.036 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHHHHh-----CCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcC
Q 025869 91 VEEYGDNLKIMVQHLKRL-----SPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLG 165 (247)
Q Consensus 91 ~~~~~~~l~~~i~~~~~~-----~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 165 (247)
..+++...+++-.++... -|.+.+|+..+....-+- . |......-...+..-.......++++|+++|
T Consensus 21 dP~iK~~~R~~~~e~~~~~m~~~V~~A~vvi~NPth~AVAL--~-----Yd~~~~~AP~VvAKG~g~~A~~I~e~A~e~g 93 (144)
T 2jlj_A 21 SPEIKSKRRQFHQEIQSRNMRENVKRSSVVVAAATHIAIGI--L-----YKRGETPLPLVTFKYTDAQVQTVRKIAEEEG 93 (144)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHTCSEEEEETTTEEEEE--E-----CCTTTCSSCEEEEEEETHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhHHhcCCCCCCEEEECCCcEEEEE--E-----eCCCCCCCCEEEEEeCCHHHHHHHHHHHHcC
Confidence 345566666666655432 267889998886432110 0 1100000111122233477788999999999
Q ss_pred CCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHH
Q 025869 166 VPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 166 v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
|+++.--..-..-.. . ..=|-.--+.-|+.+|+.|.-
T Consensus 94 VPi~e~~~LAr~Ly~---~-~~ig~~IP~ely~aVAeiLa~ 130 (144)
T 2jlj_A 94 VPILQRIPLARALYW---D-ALVDHYIPAEQIEATAEVLRW 130 (144)
T ss_dssp CCEEECHHHHHHHHH---H-CCTTSBCCGGGHHHHHHHHHH
T ss_pred CCEEeCHHHHHHHHH---h-CCCCCccCHHHHHHHHHHHHH
Confidence 999866443322110 0 001223356678888886653
No 204
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=21.97 E-value=2.7e+02 Score=21.38 Aligned_cols=65 Identities=9% Similarity=0.014 Sum_probs=38.4
Q ss_pred cCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC-
Q 025869 33 KADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPI- 111 (247)
Q Consensus 33 ~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~- 111 (247)
++++++.|.. ..... ......+. ++|+|.++.-.. .-+.....+.++++.+++.+..
T Consensus 157 G~eVi~LG~~-vp~e~---iv~aa~e~----~~d~VglS~l~t--------------~~~~~~~~~~~~i~~L~~~g~~~ 214 (262)
T 1xrs_B 157 MIDAYNLGSQ-VANED---FIKKAVEL----EADVLLVSQTVT--------------QKNVHIQNMTHLIELLEAEGLRD 214 (262)
T ss_dssp TEEEEECCSS-BCHHH---HHHHHHHT----TCSEEEEECCCC--------------TTSHHHHHHHHHHHHHHHTTCGG
T ss_pred CcEEEECCCC-CCHHH---HHHHHHHc----CCCEEEEEeecC--------------CccchHHHHHHHHHHHHhcCCCC
Confidence 5788888884 23332 23333333 789988864110 1112466888999999987632
Q ss_pred -CeEEEEcC
Q 025869 112 -MLVVLITP 119 (247)
Q Consensus 112 -~~ivl~~~ 119 (247)
.+|++-+.
T Consensus 215 ~i~vivGG~ 223 (262)
T 1xrs_B 215 RFVLLCGGP 223 (262)
T ss_dssp GSEEEEECT
T ss_pred CCEEEEECC
Confidence 55555554
No 205
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*
Probab=21.60 E-value=3.1e+02 Score=23.10 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
...-+.++++.+++..|++-++..+.|
T Consensus 135 ~i~v~~~i~~~i~~~~P~A~~in~tNP 161 (477)
T 3u95_A 135 DVKLALEIAEKMKKMAPKAYLMQTANP 161 (477)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEECSSC
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEecCh
Confidence 344568899999999999976666665
No 206
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=21.52 E-value=2.7e+02 Score=21.19 Aligned_cols=102 Identities=14% Similarity=-0.069 Sum_probs=55.3
Q ss_pred CcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q 025869 34 ADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFGRTSERQHVPVEEYGDNLKIMVQHLKRLSPIML 113 (247)
Q Consensus 34 ~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~p~~~ 113 (247)
..-+...+.|.+....+....+.... .+|+|=+=+ |+.... .+ .+.+...+..+|....+.+
T Consensus 19 ~PkIcvpl~~~t~~e~l~~a~~~~~~----~aD~vElR~---D~l~~~-------~~----~~~v~~~l~~lr~~~~~lP 80 (258)
T 4h3d_A 19 RPKICVPIIGKNKKDIIKEAKELKDA----CLDIIEWRV---DFFENV-------EN----IKEVKEVLYELRSYIHDIP 80 (258)
T ss_dssp SCEEEEEECCSSHHHHHHHHHHHTTS----SCSEEEEEG---GGCTTT-------TC----HHHHHHHHHHHHHHCTTSC
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHhhc----CCCEEEEee---cccccc-------CC----HHHHHHHHHHHHHhcCCCC
Confidence 34456666777777766666666544 678877755 554211 11 3456677778877654544
Q ss_pred EEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeech
Q 025869 114 VVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLW 172 (247)
Q Consensus 114 ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~ 172 (247)
++ +|.-+..+.+ . ..-.-..|.+.+++++....+.+||+.
T Consensus 81 iI-~T~Rt~~EGG----------------~--~~~~~~~~~~ll~~~~~~~~~d~iDvE 120 (258)
T 4h3d_A 81 LL-FTFRSVVEGG----------------E--KLISRDYYTTLNKEISNTGLVDLIDVE 120 (258)
T ss_dssp EE-EECCCGGGTC----------------S--CCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EE-EEEechhhCC----------------C--CCCCHHHHHHHHHHHHhcCCchhhHHh
Confidence 44 4442211111 0 000122455555666655557888875
No 207
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=21.47 E-value=85 Score=19.97 Aligned_cols=53 Identities=15% Similarity=0.020 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHHH
Q 025869 150 TGVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVVE 206 (247)
Q Consensus 150 ~~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~~ 206 (247)
.......++++|++.||+++.--..-..-.. ..-. |----+.-|+.+|+.+.-
T Consensus 25 ~~~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~---~~~i-g~~IP~ely~aVAeiLa~ 77 (93)
T 2vt1_B 25 TNQCALAVRKYANEVGIPTVRDVKLARKLYK---THTK-YSFVDFEHLDEVLRLIVW 77 (93)
T ss_dssp EHHHHHHHHHHHHHTTCCEEECHHHHHHHHH---HCCS-SEECCTTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCEEECHHHHHHHHH---cCCC-CCccCHHHHHHHHHHHHH
Confidence 3477788999999999999865443322110 0000 111244667888886643
No 208
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=21.42 E-value=1.5e+02 Score=18.04 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeech
Q 025869 98 LKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLW 172 (247)
Q Consensus 98 l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~ 172 (247)
..+.++.++.. .++++++..- . .. .+...+..+|++++++++...
T Consensus 16 ~~~v~kai~~g--kaklViiA~D----~---------------------~~---~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKRG--SVKEVVVAKD----A---------------------DP---ILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTTT--CEEEEEEETT----S---------------------CH---HHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcC--CeeEEEEeCC----C---------------------CH---HHHHHHHHHHHHcCCCEEEEC
Confidence 55677777766 7778877551 0 00 334455677999999987654
No 209
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=21.23 E-value=68 Score=19.89 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCeeechHHHHhcccccccccccccCCChhHHHHHHHHHH
Q 025869 151 GVYARQCIETAKDLGVPFIDLWSKMQETEGWQKKFLSDGLHLTEEGNAVVHKEVV 205 (247)
Q Consensus 151 ~~~~~~~~~~a~~~~v~~vD~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~iA~~l~ 205 (247)
......++++|+++||+++.--..-..-.. . ..=|-.--+.-|+.+|+.+.
T Consensus 26 ~~~A~~I~~~A~e~~VPi~e~~~LAr~L~~---~-~~ig~~IP~ely~aVAeil~ 76 (83)
T 3bzy_B 26 DAKALQIIKLAELYDIPVIEDIPLARSLDK---N-IHKGQYITEDFFEPVAQLIR 76 (83)
T ss_dssp THHHHHHHHHHHHTTCCEEECHHHHHHHHH---H-CCTTCBCCGGGHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCEEeCHHHHHHHHH---h-CCCCCccCHHHHHHHHHHHH
Confidence 367788999999999999866443322110 0 00011224556777777654
No 210
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2
Probab=21.16 E-value=2.4e+02 Score=23.86 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 91 VEEYGDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 91 ~~~~~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
......-+..+++.+.+..|++.++.++.|
T Consensus 125 ~~rni~i~~~i~~~i~~~~P~A~ii~~TNP 154 (480)
T 1obb_A 125 NYNQLKYFVDIARKIEKLSPKAWYLQAANP 154 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCEEEECSSC
T ss_pred hhhhHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 445667889999999999999966666554
No 211
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.93 E-value=1.2e+02 Score=23.44 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEcCCCCCcchhhhHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeeech
Q 025869 94 YGDNLKIMVQHLKRLSPIMLVVLITPPPVDEDGRMEYAKSLYGEKAMKLPERTNEMTGVYARQCIETAKDLGVPFIDLW 172 (247)
Q Consensus 94 ~~~~l~~~i~~~~~~~p~~~ivl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vD~~ 172 (247)
-.+.|.++++.++++ +++.|+..+.. ..+..+.+.+.|++.|+.++-++
T Consensus 197 s~~~l~~l~~~ik~~--~v~~if~e~~~----------------------------~~~~~~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 197 ANSDMIETVNLIIDH--NIKAIFTESTT----------------------------NPERMKKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp CHHHHHHHHHHHHHH--TCCEEECBTTS----------------------------CTHHHHHHHHHHHTTSCCCEEET
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEeCCC----------------------------ChHHHHHHHHHHHhcCCceEEec
Confidence 466799999999999 76677765411 01445666777888898876654
No 212
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=20.91 E-value=3.2e+02 Score=21.67 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHHHHHHHhC--CCCeEEEEcCCCCCcchhhhHhhhhh--h-h-------cccccchhhh--hhHHHHHH
Q 025869 90 PVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPPVDEDGRMEYAKSLY--G-E-------KAMKLPERTN--EMTGVYAR 155 (247)
Q Consensus 90 ~~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~~p~~~~~~~~~~~~~~--~-~-------~~~~~~~~~~--~~~~~~~~ 155 (247)
..+.+.+.++..++.+|+.. |+++|++-...+........++..+. + . -.......+. ..+..+..
T Consensus 149 ~~~~~~~l~~~~~~avR~~~~~p~~~v~ih~~~~~~~~~~~~~~d~~~~~g~~~~~~~DvIG~syYp~w~~~~~~~~l~~ 228 (332)
T 1hjs_A 149 NWANIARLLHSAAWGIKDSSLSPKPKIMIHLDNGWDWGTQNWWYTNVLKQGTLELSDFDMMGVSFYPFYSSSATLSALKS 228 (332)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESCTTCHHHHHHHHHHHHTTSSSCGGGCCEEEEECCSSSCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCeEEEEeCCccchHHHHHHHHHHHhcCCCCCCCcCEEEEecCcccCCCCCHHHHHH
Confidence 56788888999999999988 88777665443322221122211110 1 0 0000011111 23456667
Q ss_pred HHHHHHHhcCCCeeechHHHHhcc-ccccccc--ccccCCChhHHHHHHHHHHHHHHhc
Q 025869 156 QCIETAKDLGVPFIDLWSKMQETE-GWQKKFL--SDGLHLTEEGNAVVHKEVVEVFSVA 211 (247)
Q Consensus 156 ~~~~~a~~~~v~~vD~~~~~~~~~-~~~~~~~--~Dg~Hp~~~G~~~iA~~l~~~l~~~ 211 (247)
.++++++++|-+++=......... .....+. .++.-.|++|+..+-+.+.+.+++.
T Consensus 229 ~l~~~~~rygKpv~v~EtG~~~~~~~~~~~~~~~~~~~~~s~~~Qa~~l~~~~~~~~~~ 287 (332)
T 1hjs_A 229 SLDNMAKTWNKEIAVVETNWPISCPNPRYSFPSDVKNIPFSPEGQTTFITNVANIVSSV 287 (332)
T ss_dssp HHHHHHHHHCCEEEEEECCCCSBCSSCSSCCCGGGTTSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCCEEEEEccCccCCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 778888777755443222111110 0000111 1466779999999888888888876
No 213
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=20.55 E-value=71 Score=21.82 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHhcCCCeeec
Q 025869 149 MTGVYARQCIETAKDLGVPFIDL 171 (247)
Q Consensus 149 ~~~~~~~~~~~~a~~~~v~~vD~ 171 (247)
....+.+.++++++++++.++.+
T Consensus 42 ~~~~l~~~l~~~~~~~~~~i~a~ 64 (143)
T 2fyx_A 42 VADGLKDILRDIATQNGLELVAL 64 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhhcCeEEEEE
Confidence 55688888899999988877655
No 214
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=20.55 E-value=1.4e+02 Score=23.41 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=30.7
Q ss_pred CCCcEEEEEccCccccccCCCCCCCCCChhHH---HHHHHHHHHHHHHhCCCCeEEEEcCC
Q 025869 63 NPPVATTIFFGANDAALFGRTSERQHVPVEEY---GDNLKIMVQHLKRLSPIMLVVLITPP 120 (247)
Q Consensus 63 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~~~~~p~~~ivl~~~~ 120 (247)
.+.|+||+..|+.-.. .....+.+ ..-++.+.+.+.+..|++.+++++.|
T Consensus 68 ~~aDvViiav~~p~~~--------g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP 120 (310)
T 1guz_A 68 ANSDIVIITAGLPRKP--------GMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120 (310)
T ss_dssp TTCSEEEECCSCCCCT--------TCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred CCCCEEEEeCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 3679999988753211 00112222 34467778888888888877777554
No 215
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=20.06 E-value=1.6e+02 Score=17.92 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=43.5
Q ss_pred ceEEEEcccccccccCCCcHHHHHHHHhc-ccCcEEecCCCCCchHHHHHHhhhhcCCCCCCCCcEEEEEccCccccccC
Q 025869 3 PQIVLFGDSITQQSFGSAGWGAALADAYC-RKADVLLRGYGGYNTRWALFLLHHIFPLDNSNPPVATTIFFGANDAALFG 81 (247)
Q Consensus 3 ~~i~~~GDS~~~~g~~~~~~~~~l~~~~~-~~~~v~n~g~~G~~t~~~~~~l~~~~~~~~~~~~d~vii~~G~ND~~~~~ 81 (247)
++|+++.|+... ...+...+. .++.+.... +.......+.. . .||++++.....+..
T Consensus 2 ~~iliv~~~~~~--------~~~l~~~l~~~g~~v~~~~----~~~~~~~~l~~---~----~~dlii~d~~~~~~~--- 59 (119)
T 2j48_A 2 GHILLLEEEDEA--------ATVVCEMLTAAGFKVIWLV----DGSTALDQLDL---L----QPIVILMAWPPPDQS--- 59 (119)
T ss_dssp CEEEEECCCHHH--------HHHHHHHHHHTTCEEEEES----CHHHHHHHHHH---H----CCSEEEEECSTTCCT---
T ss_pred CEEEEEeCCHHH--------HHHHHHHHHhCCcEEEEec----CHHHHHHHHHh---c----CCCEEEEecCCCCCC---
Confidence 578888888663 233444442 124443211 23333333332 2 689999965433221
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEcCCC
Q 025869 82 RTSERQHVPVEEYGDNLKIMVQHLKRLS--PIMLVVLITPPP 121 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~--p~~~ivl~~~~p 121 (247)
-..+++.+++.. +.+++++++...
T Consensus 60 ----------------~~~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 60 ----------------CLLLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp ----------------HHHHHHHHHHTCCCSSCCCEEEESSC
T ss_pred ----------------HHHHHHHHHhccccCCCCEEEEeCCC
Confidence 125667777764 677788877643
Done!