BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025870
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 152/239 (63%), Gaps = 8/239 (3%)
Query: 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNS 59
M LF + P +IV+ +D N + ++ K+ DK +E + K+++ +K IL G +
Sbjct: 6 MLPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTN 60
Query: 60 ESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASD 119
E EP +EA AQL E + L LI L ++ E +KD TQ+ N+ R+Q+ ++ +
Sbjct: 61 EKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVE 120
Query: 120 YLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNF 179
Y+ A+ +L +L+ GYE +AL G MLRECIRH+ +A+ +L S + FF Y++L F
Sbjct: 121 YISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTF 180
Query: 180 DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVK-VGKL 237
DIA+DA ATFK+LLTRHK VA+FL +NYD F +Y KLL+S NY+T+RQ++K +G+L
Sbjct: 181 DIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTKRQSLKLLGEL 238
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 145/231 (62%), Gaps = 2/231 (0%)
Query: 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSE 60
M F ++P DIV+ ++ + + D+ + K E E+ KN+ +K ILYG +E
Sbjct: 1 MPFPFGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNE 59
Query: 61 SEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDY 120
EP +EA AQL E + L L+ L ++ E +KD Q+ N+ R+Q+ ++ +Y
Sbjct: 60 KEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEY 119
Query: 121 LEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFD 180
+ ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+ FF Y+++ FD
Sbjct: 120 ICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFD 179
Query: 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQA 231
IA+DA ATFK+LLTRHK AEFL ++YD FF+EY KLL S NY+T+RQ+
Sbjct: 180 IASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTKRQS 229
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal
Peptide Of Strad
pdb|1UPL|A Chain A, Crystal Structure Of Mo25 Alpha
pdb|1UPL|B Chain B, Crystal Structure Of Mo25 Alpha
Length = 341
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 139/227 (61%), Gaps = 2/227 (0%)
Query: 5 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPV 64
F ++P DIV+ ++ + D+ + K E E+ KN+ K ILYG +E EP
Sbjct: 5 FGKSHKSPADIVKNLKESXAVLEKQ-DISDKKAEKATEEVSKNLVAXKEILYGTNEKEPQ 63
Query: 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN 124
+EA AQL E + L L+ L ++ E +KD Q+ N+ R+Q+ ++ +Y+
Sbjct: 64 TEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ 123
Query: 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAAD 184
++L L+ GYE+ ++AL+ G LRECIRH+ +A+ +L S+ FF Y++ FDIA+D
Sbjct: 124 QNILFXLLKGYESPEIALNCGIXLRECIRHEPLAKIILWSEQFYDFFRYVEXSTFDIASD 183
Query: 185 AAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQA 231
A ATFK+LLTRHK AEFL ++YD FF+EY KLL S NY+T+RQ+
Sbjct: 184 AFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTKRQS 229
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 136 ENTDMALH-----YGAMLRECIR-HQSVARY------VLESQHMKKFFDYIQLPNFDIAA 183
E+TD H Y LR+C H S+ + KF +++ FD
Sbjct: 18 ESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHV-FRTFDANG 76
Query: 184 DAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKV 234
D F+E + T L + W F+ Y+ L+ + YI++ + +++
Sbjct: 77 DGTIDFREFIIALSVTSRGKLEQKLKWAFSMYD---LDGNGYISKAEMLEI 124
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With
Daminozide
Length = 374
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 15 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 60
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 4 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 49
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 12 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 57
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 48 IRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNL 93
+REL+S + +S+ + QLT EF EN+ + I L K L
Sbjct: 88 VRELRSRTFDSSDEVILKPTGNQLTVEFLEENSFSVPILVLKKDGL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,286,848
Number of Sequences: 62578
Number of extensions: 215205
Number of successful extensions: 580
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 8
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)