Query 025870
Match_columns 247
No_of_seqs 113 out of 218
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:27:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 1.8E-88 3.9E-93 631.7 23.8 237 1-241 1-239 (335)
2 KOG1566 Conserved protein Mo25 100.0 5.3E-86 1.1E-90 605.4 23.9 240 1-240 1-241 (342)
3 cd00020 ARM Armadillo/beta-cat 89.0 4.6 9.9E-05 30.0 8.7 99 138-240 21-120 (120)
4 PF10508 Proteasom_PSMB: Prote 87.4 14 0.0003 36.7 13.3 113 124-241 75-190 (503)
5 KOG0946 ER-Golgi vesicle-tethe 86.1 9.8 0.00021 40.5 11.7 118 66-197 108-244 (970)
6 PTZ00446 vacuolar sorting prot 79.6 3.5 7.7E-05 36.4 4.9 28 1-28 1-41 (191)
7 cd00020 ARM Armadillo/beta-cat 79.5 13 0.00027 27.6 7.4 114 74-192 2-118 (120)
8 PF12783 Sec7_N: Guanine nucle 73.8 41 0.00089 27.9 9.6 78 161-242 69-148 (168)
9 KOG1655 Protein involved in va 73.3 15 0.00032 33.0 7.0 131 1-140 1-158 (218)
10 PF08767 CRM1_C: CRM1 C termin 72.1 86 0.0019 29.3 13.5 102 136-241 132-241 (319)
11 PLN03200 cellulose synthase-in 68.1 1.6E+02 0.0035 34.9 15.3 167 70-241 90-262 (2102)
12 PF08064 UME: UME (NUC010) dom 66.4 7.2 0.00016 30.8 3.3 40 201-240 2-44 (107)
13 PF05952 ComX: Bacillus compet 64.2 4.9 0.00011 29.1 1.7 19 117-135 5-23 (57)
14 KOG0166 Karyopherin (importin) 63.5 56 0.0012 33.2 9.6 113 71-188 356-480 (514)
15 PF00514 Arm: Armadillo/beta-c 57.5 39 0.00085 21.4 5.1 37 71-107 4-40 (41)
16 PF08569 Mo25: Mo25-like; Int 57.4 1.7E+02 0.0038 27.8 11.4 143 70-215 155-306 (335)
17 PF10508 Proteasom_PSMB: Prote 57.0 2.1E+02 0.0045 28.4 15.3 111 125-240 201-319 (503)
18 KOG1992 Nuclear export recepto 55.1 1.5E+02 0.0032 32.2 11.2 142 66-224 79-247 (960)
19 PTZ00429 beta-adaptin; Provisi 53.4 3E+02 0.0066 29.2 13.6 56 175-240 307-362 (746)
20 PF12717 Cnd1: non-SMC mitotic 52.4 30 0.00065 29.2 5.0 54 181-243 4-57 (178)
21 PF15087 DUF4551: Protein of u 46.4 1.8E+02 0.0038 30.4 10.0 206 15-240 374-614 (617)
22 PF06757 Ins_allergen_rp: Inse 43.4 35 0.00076 29.1 4.0 62 156-225 23-89 (179)
23 PLN03200 cellulose synthase-in 41.6 4.2E+02 0.009 31.8 13.0 151 75-240 526-680 (2102)
24 PF07304 SRA1: Steroid recepto 41.2 81 0.0018 26.7 5.8 40 41-80 67-106 (157)
25 PTZ00464 SNF-7-like protein; P 39.4 1.6E+02 0.0035 26.3 7.7 27 1-27 1-31 (211)
26 PF01602 Adaptin_N: Adaptin N 36.6 3.9E+02 0.0084 25.6 12.5 103 124-241 304-407 (526)
27 PF14680 FANCI_HD2: FANCI heli 36.5 36 0.00077 30.8 3.1 46 145-213 36-84 (234)
28 PF01417 ENTH: ENTH domain; I 36.1 1.1E+02 0.0025 24.2 5.7 91 58-152 14-112 (125)
29 COG5657 CSE1 CAS/CSE protein i 35.8 1.8E+02 0.004 31.6 8.5 133 75-224 85-241 (947)
30 cd03572 ENTH_epsin_related ENT 34.8 2.6E+02 0.0056 23.0 8.1 90 60-152 13-110 (122)
31 PF06371 Drf_GBD: Diaphanous G 34.6 2.6E+02 0.0056 23.0 11.2 59 176-238 127-185 (187)
32 PF02985 HEAT: HEAT repeat; I 33.8 26 0.00056 21.2 1.3 24 218-241 7-30 (31)
33 PF12348 CLASP_N: CLASP N term 33.4 3E+02 0.0065 23.4 9.9 136 89-243 17-163 (228)
34 KOG0946 ER-Golgi vesicle-tethe 33.4 6.7E+02 0.015 27.4 12.3 130 65-242 21-153 (970)
35 PF06393 BID: BH3 interacting 31.9 95 0.0021 27.7 4.9 72 39-116 83-166 (196)
36 KOG3230 Vacuolar assembly/sort 31.0 1.2E+02 0.0026 27.4 5.4 66 1-78 1-68 (224)
37 PF09090 MIF4G_like_2: MIF4G l 29.7 2.4E+02 0.0051 25.4 7.3 120 12-165 10-137 (253)
38 smart00802 UME Domain in UVSB 29.3 68 0.0015 25.6 3.3 40 201-240 2-44 (107)
39 PHA02800 hypothetical protein; 28.2 3.6E+02 0.0079 23.3 7.6 87 132-220 44-141 (161)
40 KOG1086 Cytosolic sorting prot 27.7 3E+02 0.0065 28.0 8.0 155 35-195 212-405 (594)
41 PF01602 Adaptin_N: Adaptin N 27.1 3.4E+02 0.0074 26.0 8.3 29 168-196 270-298 (526)
42 COG0255 RpmC Ribosomal protein 27.0 95 0.0021 23.2 3.5 49 8-56 9-60 (69)
43 PF12348 CLASP_N: CLASP N term 23.6 4.6E+02 0.0099 22.2 12.0 183 42-242 22-208 (228)
44 PF04858 TH1: TH1 protein; In 22.8 8.6E+02 0.019 25.2 11.8 28 107-135 308-335 (584)
45 cd00933 barnase Barnase, a mem 22.4 37 0.0008 27.5 0.6 14 221-234 17-30 (107)
46 PF03224 V-ATPase_H_N: V-ATPas 22.1 1.2E+02 0.0026 27.8 4.1 57 180-241 72-135 (312)
47 COG4699 Uncharacterized protei 21.7 94 0.002 25.6 2.8 31 198-229 23-58 (120)
48 KOG1525 Sister chromatid cohes 21.4 1.3E+03 0.027 26.5 17.5 108 9-131 16-124 (1266)
49 PHA03074 late transcription fa 21.4 5.2E+02 0.011 23.5 7.6 104 97-239 25-135 (225)
50 PF12231 Rif1_N: Rap1-interact 21.1 1E+02 0.0022 29.4 3.4 63 182-244 10-79 (372)
51 KOG4438 Centromere-associated 20.4 2.8E+02 0.0061 27.8 6.2 89 114-211 31-125 (446)
52 COG0219 CspR Predicted rRNA me 20.4 47 0.001 28.6 0.9 17 137-153 9-25 (155)
53 PRK15201 fimbriae regulatory p 20.3 86 0.0019 28.0 2.5 87 50-146 69-160 (198)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=1.8e-88 Score=631.70 Aligned_cols=237 Identities=52% Similarity=0.830 Sum_probs=208.7
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcccCchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhch
Q 025870 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 1 M~~lfk~~~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dl 80 (247)
|+||||++||||+|+||+++|+|.+|+ +..+++++++.||++|+|++||+||+|++|++|++|+|+||++|+|++|+
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~---~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl 77 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLD---SKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL 77 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHH---SS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhc---cccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999998 23566777777999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCc-chhHHhhcC-HHHHHHHHHhccChhhhHhHHHHHHHHHHHHHHH
Q 025870 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKL-IASDYLEAN-IDLLDILIAGYENTDMALHYGAMLRECIRHQSVA 158 (247)
Q Consensus 81 l~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~-p~v~Yl~~~-peil~~L~~gY~~~diAl~~G~mLREcik~e~la 158 (247)
+..||.+|++||||+|||+++||++++|+++|+++ |+|+|+++| |||+++|+.||++||+|++||.|||||+|||++|
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred HHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHh
Q 025870 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLC 238 (247)
Q Consensus 159 k~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel 238 (247)
++||+++.||+||+|++.++||||||||+||+|+||+||++||+||..|||+||.+|| +||+|+|||||||||||||||
T Consensus 158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el 236 (335)
T PF08569_consen 158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL 236 (335)
T ss_dssp HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hhh
Q 025870 239 ASQ 241 (247)
Q Consensus 239 ~s~ 241 (247)
|..
T Consensus 237 lld 239 (335)
T PF08569_consen 237 LLD 239 (335)
T ss_dssp HHS
T ss_pred HHc
Confidence 964
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=5.3e-86 Score=605.39 Aligned_cols=240 Identities=54% Similarity=0.835 Sum_probs=234.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcccCchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhch
Q 025870 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 1 M~~lfk~~~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dl 80 (247)
|++||+++||||+|+||.+||.|..++..++..+.|++++.|||+|++..||+|+||++|.||.+|+|+||++|+|+.|+
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~ 80 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADV 80 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999988767889999988999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccC-hhhhHhHHHHHHHHHHHHHHHH
Q 025870 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN-TDMALHYGAMLRECIRHQSVAR 159 (247)
Q Consensus 81 l~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~-~diAl~~G~mLREcik~e~lak 159 (247)
+.+||+|+|+++||+|||+++||++++||++|+|+|+|+|+++|||+++.|+.||++ +||||+||+|||||+|||.||+
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~Lak 160 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAK 160 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhh
Q 025870 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCA 239 (247)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~ 239 (247)
++|+|++||+||.||+.|+||||||||+|||++|||||.+|||||..|||+||.+|+++|++|+||||||||+|||||++
T Consensus 161 iiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 161 IILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred HHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996679999999999999999999987
Q ss_pred h
Q 025870 240 S 240 (247)
Q Consensus 240 s 240 (247)
-
T Consensus 241 l 241 (342)
T KOG1566|consen 241 L 241 (342)
T ss_pred h
Confidence 4
No 3
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.95 E-value=4.6 Score=30.04 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=74.2
Q ss_pred hhhhHhHHHHHHHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHH
Q 025870 138 TDMALHYGAMLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYN 216 (247)
Q Consensus 138 ~diAl~~G~mLREcik~-e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn 216 (247)
+++-..+-.-|.....+ +...+.++..+.+..+.+++..++-++.-.|..++..+....+.....+...+ +.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG---GVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC---ChHHHH
Confidence 45555555666666665 77777888888888888999999999999999999999776554333444333 555554
Q ss_pred HhhccCCCccchhhhhhhhhHhhh
Q 025870 217 SKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 217 ~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
.++.+++.=++++++-+|+.|.+
T Consensus 98 -~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 98 -NLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred -HHHhcCCHHHHHHHHHHHHHhhC
Confidence 78888899999999999988753
No 4
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=87.41 E-value=14 Score=36.69 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=84.1
Q ss_pred CHHHHHHHHHhccChhhhHh--HHHHHHHHHHHHHH-HHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHH
Q 025870 124 NIDLLDILIAGYENTDMALH--YGAMLRECIRHQSV-ARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTV 200 (247)
Q Consensus 124 ~peil~~L~~gY~~~diAl~--~G~mLREcik~e~l-ak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lv 200 (247)
.|++...|..|..+|+-.+- +=..|+-|++|... +..+...+.+-.....+..++-+||..|...++.+.. |+.-.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhH
Confidence 67777788888876654332 22337778876655 5556666667777789999999999999999999986 55555
Q ss_pred HHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhh
Q 025870 201 AEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 201 aefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~ 241 (247)
+..+..|- ..+.+ .|+.++|=+.|.+.+-++.++.++
T Consensus 154 ~~l~~~~~---~~~L~-~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 154 EQLFDSNL---LSKLK-SLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhCcch---HHHHH-HHHhccCHHHHHHHHHHHHHHHhc
Confidence 66666664 66675 788887778888899999988765
No 5
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.11 E-value=9.8 Score=40.53 Aligned_cols=118 Identities=18% Similarity=0.286 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhh-chHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchh-HHhhcCHHHHHHHHHhccChhhhHh
Q 025870 66 EACAQLTAEFFRE-NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIAS-DYLEANIDLLDILIAGYENTDMALH 143 (247)
Q Consensus 66 e~~~qLa~ei~~~-dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v-~Yl~~~peil~~L~~gY~~~diAl~ 143 (247)
+.-.++|..+++. |.+..|+..+...||-.|--..++++++++.+. +-+ +-|..+|-=+..|+.--.+.
T Consensus 108 d~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~----~e~q~~ll~~P~gIS~lmdlL~Ds----- 178 (970)
T KOG0946|consen 108 DLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP----TELQDALLVSPMGISKLMDLLRDS----- 178 (970)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC----HHHHHHHHHCchhHHHHHHHHhhh-----
Confidence 3456788776655 799999999999999999999999999999543 333 55677888777776544321
Q ss_pred HHHHHHHHHHHHH-------------HHHHHhcchhhHhhhhhccCCC-c---hhhhhhHHHHHHHHhhCh
Q 025870 144 YGAMLRECIRHQS-------------VARYVLESQHMKKFFDYIQLPN-F---DIAADAAATFKELLTRHK 197 (247)
Q Consensus 144 ~G~mLREcik~e~-------------lak~iL~~~~f~~fF~yv~~~~-F---eiaSDAf~tfkelLtrHk 197 (247)
||-||.|. +-|++-+...|.++|+-++..- - =|.=|++.-+.-||..|-
T Consensus 179 -----rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 179 -----REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred -----hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 33444443 3444445556777777764321 2 356677777777777664
No 6
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=79.62 E-value=3.5 Score=36.43 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=20.0
Q ss_pred CCCCCCCCCCC-------------hHHHHHHHHHHHHHhhc
Q 025870 1 MKGLFKSKPRT-------------PVDIVRQTRDLIIYANR 28 (247)
Q Consensus 1 M~~lfk~~~Kt-------------P~elVr~l~e~l~~L~~ 28 (247)
|.|||||+.++ |.+-+-.+++++..|..
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~k 41 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEK 41 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 88999766444 55666778888887764
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=79.47 E-value=13 Score=27.60 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=77.4
Q ss_pred HHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHh--ccChhhhHhHHHHHHHH
Q 025870 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--YENTDMALHYGAMLREC 151 (247)
Q Consensus 74 ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~g--Y~~~diAl~~G~mLREc 151 (247)
++++.+.+..++..|..=+.+.|..+.....++-.... +..+.+.+ .+++..|+.. .+++++...+-..|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN----DNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH----HHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56777888888888888888899998888888876432 23344433 2333333322 24678888888888887
Q ss_pred HHHHH-HHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHH
Q 025870 152 IRHQS-VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKEL 192 (247)
Q Consensus 152 ik~e~-lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkel 192 (247)
..+.. ....+...+....+.++++.++-++...|..++..+
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77664 444555566777778888877777777777666543
No 8
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=73.76 E-value=41 Score=27.94 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=57.5
Q ss_pred HhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCC--ccchhhhhhhhhHh
Q 025870 161 VLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN--YITRRQAVKVGKLC 238 (247)
Q Consensus 161 iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~N--YVTkRQSLKLLgel 238 (247)
++.++.+.-+.+.+..++|.|..-+...|.-++.+++ .+|..-.+.|+..+-..+++|++ |=-|.-+|..+.++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3344444555566666779999999999999998765 45666678899988644788777 66677789888888
Q ss_pred hhhh
Q 025870 239 ASQW 242 (247)
Q Consensus 239 ~s~~ 242 (247)
..+-
T Consensus 145 ~~~p 148 (168)
T PF12783_consen 145 CKDP 148 (168)
T ss_pred HhCh
Confidence 7653
No 9
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.26 E-value=15 Score=33.01 Aligned_cols=131 Identities=24% Similarity=0.398 Sum_probs=69.4
Q ss_pred CCCCCC-CCCCChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhh
Q 025870 1 MKGLFK-SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRE 78 (247)
Q Consensus 1 M~~lfk-~~~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~ 78 (247)
|.-+|+ ++||.|.- +|.+++..++..+. +-+++-.|. .|++|+=.||+.+=-| |..+.+.|=|-.+.+.
T Consensus 1 MnRiFG~~k~k~p~p---sL~dai~~v~~r~d-Sve~KIskLDaeL~k~~~Qi~k~R~g-----paq~~~KqrAlrVLkQ 71 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPP---SLQDAIDSVNKRSD-SVEKKISKLDAELCKYKDQIKKTRPG-----PAQNALKQRALRVLKQ 71 (218)
T ss_pred CcccccCCCCCCCCh---hHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHHHH
Confidence 667895 56788854 56667766665432 233344444 5899999999988333 4445555555554443
Q ss_pred c-hHHHHHhhCCCCC---------hhhhhhHHHHHHHHhh--hcc--CCCcc-----------hhHHhhcCHHHHHHHHH
Q 025870 79 N-TLRLLITCLPKLN---------LEARKDATQVVANLQR--QQV--HSKLI-----------ASDYLEANIDLLDILIA 133 (247)
Q Consensus 79 d-ll~~Li~~L~~L~---------FE~RKdv~~If~~llr--~~~--~~r~p-----------~v~Yl~~~peil~~L~~ 133 (247)
. ....--..|..=. =|+-||..+-.+.+-- ++. ..+-+ ..+++...-||=..|=+
T Consensus 72 KK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr 151 (218)
T KOG1655|consen 72 KKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGR 151 (218)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 1122222222111 2345665554444321 000 00001 23566667777777778
Q ss_pred hccChhh
Q 025870 134 GYENTDM 140 (247)
Q Consensus 134 gY~~~di 140 (247)
-|..|||
T Consensus 152 ~y~~pei 158 (218)
T KOG1655|consen 152 NYNTPDI 158 (218)
T ss_pred ccCCCCc
Confidence 8887773
No 10
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=72.11 E-value=86 Score=29.31 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=69.3
Q ss_pred cChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhc----cCCCchhhhhhHHHHHHHHhhCh----HHHHHHHHhc
Q 025870 136 ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYI----QLPNFDIAADAAATFKELLTRHK----STVAEFLSKN 207 (247)
Q Consensus 136 ~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~yv----~~~~FeiaSDAf~tfkelLtrHk----~lvaefL~~N 207 (247)
+.||.....=.+||-++++-.-+=.-|..+.|..+++.+ +.++-||+..++.++.++++... ....+|..+.
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQY 211 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 368999999999999998743222237777888888754 88999999999999999998543 4555888877
Q ss_pred HHHHHHHHHHhhccCCCccchhhhhhhhhHhhhh
Q 025870 208 YDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 208 yd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~ 241 (247)
|-.+..+.=.-|..+. -.-.+++-+++|+.
T Consensus 212 ~~~il~~if~vltD~~----Hk~gf~~q~~iL~~ 241 (319)
T PF08767_consen 212 YLDILQDIFSVLTDSD----HKSGFKLQSQILSN 241 (319)
T ss_dssp HHHHHHHHHHHHHSTT-----GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcc----cHHHHHHHHHHHHH
Confidence 7666665542333332 12344544454444
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=68.06 E-value=1.6e+02 Score=34.90 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=110.9
Q ss_pred HHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcc-C-CCcchhHHhhcCHHHHHHHHHhccChhhh---HhH
Q 025870 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQV-H-SKLIASDYLEANIDLLDILIAGYENTDMA---LHY 144 (247)
Q Consensus 70 qLa~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~-~-~r~p~v~Yl~~~peil~~L~~gY~~~diA---l~~ 144 (247)
+....|...+.+..|+..|..=+.|+|++++.+..++-.... + .+...+-.--.=|-++..|-.|- .+|.+ ..+
T Consensus 90 ~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gs-k~d~~L~~~Av 168 (2102)
T PLN03200 90 DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGN-KQDKVVEGLLT 168 (2102)
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCc-hhhHHHHHHHH
Confidence 455566667888889999988899999999877766654221 0 00000000000133333333331 23443 234
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCC
Q 025870 145 GAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN 224 (247)
Q Consensus 145 G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~N 224 (247)
|.+..-|.-.|..++.++.....-.+.+.+..++-++...|...+-.+...+......-+..+ .+...- +||.+++
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaG---aVP~LV-~LL~sg~ 244 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAG---AVKQLL-KLLGQGN 244 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC---CHHHHH-HHHccCC
Confidence 454455666677888888988889999999999999999999988777777666666666655 344553 7898766
Q ss_pred c-cchhhhhhhhhHhhhh
Q 025870 225 Y-ITRRQAVKVGKLCASQ 241 (247)
Q Consensus 225 Y-VTkRQSLKLLgel~s~ 241 (247)
. ..|.++.-.|+.|.++
T Consensus 245 ~~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 245 EVSVRAEAAGALEALSSQ 262 (2102)
T ss_pred ChHHHHHHHHHHHHHhcC
Confidence 5 7799999999999875
No 12
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=66.41 E-value=7.2 Score=30.82 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=34.2
Q ss_pred HHHHHhcHHHHHHHHHHhhcc---CCCccchhhhhhhhhHhhh
Q 025870 201 AEFLSKNYDWFFAEYNSKLLE---SSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 201 aefL~~Nyd~Ff~~yn~~Ll~---S~NYVTkRQSLKLLgel~s 240 (247)
++||..|+=..+.++|..|.. +..|..||++|+=||++..
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~ 44 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK 44 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH
Confidence 689999998888888866666 7999999999999999864
No 13
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=64.17 E-value=4.9 Score=29.10 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.6
Q ss_pred hhHHhhcCHHHHHHHHHhc
Q 025870 117 ASDYLEANIDLLDILIAGY 135 (247)
Q Consensus 117 ~v~Yl~~~peil~~L~~gY 135 (247)
.|.||..||+++..|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 4899999999999997664
No 14
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.54 E-value=56 Score=33.16 Aligned_cols=113 Identities=18% Similarity=0.184 Sum_probs=71.7
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhcc--Chhhh-------
Q 025870 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMA------- 141 (247)
Q Consensus 71 La~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~diA------- 141 (247)
=++.+...++++.|+..|..=||..||.++=..+|+.- ++..--+.||..+. |+.-|+.-.. +.++.
T Consensus 356 qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l 431 (514)
T KOG0166|consen 356 QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGL 431 (514)
T ss_pred HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHH
Confidence 45688899999999999999999999999999999876 44444567777654 4444433322 22222
Q ss_pred ---HhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHH
Q 025870 142 ---LHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAAT 188 (247)
Q Consensus 142 ---l~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~t 188 (247)
+-.|.+..+-=. +.++.+|=+.+...+.-..=...|=||..=|+..
T Consensus 432 ~nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~I 480 (514)
T KOG0166|consen 432 ENILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKI 480 (514)
T ss_pred HHHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHH
Confidence 222333222111 5566666666666666555555555665555543
No 15
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=57.46 E-value=39 Score=21.43 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHh
Q 025870 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQ 107 (247)
Q Consensus 71 La~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~ll 107 (247)
-.+.+...+.+..|+..|..-+.+.++.++-...|+-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4567789999999999999999999999998888774
No 16
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=57.45 E-value=1.7e+02 Score=27.82 Aligned_cols=143 Identities=14% Similarity=0.214 Sum_probs=98.5
Q ss_pred HHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhH-------
Q 025870 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL------- 142 (247)
Q Consensus 70 qLa~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl------- 142 (247)
.++.-+..++.+..+......=.||---|+-..|..++-+.. ..+.+|+..|-+-.+....+-=..+-..
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk---~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK---KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 456666666677778888888899999999999999888643 3578999998776665544432222222
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHh-hC-hHHHHHHHHhcHHHHHHHH
Q 025870 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLT-RH-KSTVAEFLSKNYDWFFAEY 215 (247)
Q Consensus 143 ~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLt-rH-k~lvaefL~~Nyd~Ff~~y 215 (247)
.-|.+|-+=.-++.+.+|+=..+.+.-+......++=-|..+||..||--.. .| ++=|.+.|..|=++...-.
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl 306 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL 306 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence 2455665555567777777777777777777788888899999999997664 22 3346688888877655433
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=57.01 E-value=2.1e+02 Score=28.42 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=76.0
Q ss_pred HHHHHHHHHhccChh--hhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHH------HHHHHHhhC
Q 025870 125 IDLLDILIAGYENTD--MALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAA------TFKELLTRH 196 (247)
Q Consensus 125 peil~~L~~gY~~~d--iAl~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~------tfkelLtrH 196 (247)
-.+++.++..+++.| +-++|-.+|-+....+.-+++|.....|.++.+.++.+.-|--..++- -|-.+.+.+
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~ 280 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS 280 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence 347888888887777 578999999999999999999999999999999887665554222222 122222223
Q ss_pred hHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhh
Q 025870 197 KSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 197 k~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
+.-+ ..-|-.|.+... .+++|++-.-+=-++--||-+.|
T Consensus 281 ~~~v----~~~~p~~~~~l~-~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 281 PQEV----LELYPAFLERLF-SMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred hHHH----HHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHhC
Confidence 3222 245667777776 77888777666566666776654
No 18
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.09 E-value=1.5e+02 Score=32.20 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhHhHH
Q 025870 66 EACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYG 145 (247)
Q Consensus 66 e~~~qLa~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl~~G 145 (247)
..+.+=..|++++..+..++.+ ++--.+......+..-++....+ -|.++.-|+.-....|.-.+-|
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s----~~~iQ~qlseal~~Ig~~DFP~k---------WptLl~dL~~~ls~~D~~~~~g 145 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSS----PFNIQKQLSEALSLIGKRDFPDK---------WPTLLPDLVARLSSGDFNVING 145 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHhccccchh---------hHHHHHHHHhhccccchHHHHH
Confidence 3344445555555555444433 33333433333332222222233 3667777776666666555444
Q ss_pred HHHHHHHHHHHHH--HHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHH----------------------
Q 025870 146 AMLRECIRHQSVA--RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA---------------------- 201 (247)
Q Consensus 146 ~mLREcik~e~la--k~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lva---------------------- 201 (247)
..-- -|...- |+...|+.+|.=.+|+=..-=+--+|=|.+-.++.++|..-.+
T Consensus 146 VL~t---ahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~Q 222 (960)
T KOG1992|consen 146 VLVT---AHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQ 222 (960)
T ss_pred HHHH---HHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcc
Confidence 3211 011111 1234556666666665332222233444444445555544333
Q ss_pred ---HHHHhcHHHHHHHHHHhhccCCC
Q 025870 202 ---EFLSKNYDWFFAEYNSKLLESSN 224 (247)
Q Consensus 202 ---efL~~Nyd~Ff~~yn~~Ll~S~N 224 (247)
||+++|-+.|.+++- ++++.+|
T Consensus 223 DiPEFFEdnm~~wM~~F~-k~l~~~~ 247 (960)
T KOG1992|consen 223 DIPEFFEDNMKTWMGAFH-KLLTYDN 247 (960)
T ss_pred cchHHHHhhHHHHHHHHH-HHHhccC
Confidence 899999999999995 8888665
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=53.38 E-value=3e+02 Score=29.18 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=43.3
Q ss_pred cCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhh
Q 025870 175 QLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 175 ~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
..+.-+|.-=++.+...++.+|+.+. ..+++.||-.|| .++|| |+..|.+|-.|++
T Consensus 307 ~ss~~eiqyvaLr~I~~i~~~~P~lf----~~~~~~Ff~~~~-----Dp~yI-K~~KLeIL~~Lan 362 (746)
T PTZ00429 307 SRRDAETQYIVCKNIHALLVIFPNLL----RTNLDSFYVRYS-----DPPFV-KLEKLRLLLKLVT 362 (746)
T ss_pred hCCCccHHHHHHHHHHHHHHHCHHHH----HHHHHhhhcccC-----CcHHH-HHHHHHHHHHHcC
Confidence 34567888889999999999998665 446888996665 58886 8888888876654
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=52.43 E-value=30 Score=29.19 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=42.3
Q ss_pred hhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhhhh
Q 025870 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQWV 243 (247)
Q Consensus 181 iaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~~~ 243 (247)
|-+-|..++-||..||+.++-.|+. .. ...|.+++=..|++++..|..|+++=.
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~--------~l-~~~L~D~~~~VR~~al~~Ls~Li~~d~ 57 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLP--------NL-YKCLRDEDPLVRKTALLVLSHLILEDM 57 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHH--------HH-HHHHCCCCHHHHHHHHHHHHHHHHcCc
Confidence 4567888999999999988755533 22 257888888889999999999998743
No 21
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=46.39 E-value=1.8e+02 Score=30.36 Aligned_cols=206 Identities=18% Similarity=0.286 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhhcccCchhhhHHHHHH--HHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhchHHHHHhhCCCCC
Q 025870 15 IVRQTRDLIIYANRSADVRESKREDKMA--ELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLN 92 (247)
Q Consensus 15 lVr~l~e~l~~L~~~~~~~~~k~~~k~e--e~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~L~~L~ 92 (247)
+|.+|.|.|..=.+..+ ...+. ..++ +++-.+.|+-..++-..|.+|..=.+-.--+...-.|+|..|| +-|.++
T Consensus 374 lv~~L~eyLp~s~~~~~-~q~~~-qrADeL~~~i~i~qtL~lMFReTE~e~sRln~L~A~kg~l~~~LL~~Li-~~P~~p 450 (617)
T PF15087_consen 374 LVQTLHEYLPESRSKNG-LQNKS-QRADELELCILIIQTLGLMFRETEVEPSRLNTLAAKKGALFSNLLVILI-CEPQIP 450 (617)
T ss_pred HHHHHHHhcccCcCccc-ccccc-chHHHHHHHHHHHHHHHHHHhccccchhhHHHHHhhhhhhHHHHHHHHh-cCcccc
Confidence 47788886653221111 11111 1234 4667778888889988898887533333333444445554443 334433
Q ss_pred -----hhhhhhHHHHHHHHhhhccCCCc--chhHHhhcCHHHHHHHHHhc------cChhhhHhHHHHHHHHHHHHHHHH
Q 025870 93 -----LEARKDATQVVANLQRQQVHSKL--IASDYLEANIDLLDILIAGY------ENTDMALHYGAMLRECIRHQSVAR 159 (247)
Q Consensus 93 -----FE~RKdv~~If~~llr~~~~~r~--p~v~Yl~~~peil~~L~~gY------~~~diAl~~G~mLREcik~e~lak 159 (247)
|+. +-++. -.-..+... -..||+-+-..+|+-++--. ...+-.++.|-|+|..=-|
T Consensus 451 ~~~~~~~~-~~~~~-----~~~~~d~elq~L~~EYtdaAtalLfEillv~~q~s~~~~~~~fl~i~Wi~~~Lq~~----- 519 (617)
T PF15087_consen 451 KSCPPFDI-QLVAD-----SSMSFDAELQKLLLEYTDAATALLFEILLVFQQGSLGLGSDKFLAISWIMRVLQSH----- 519 (617)
T ss_pred ccCCcccc-ccccc-----cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCchhHHHHHHHHhcC-----
Confidence 111 10000 000000000 01366666666665553211 2355666777777733222
Q ss_pred HHhcchhhHhhhhhccCCCchh----------hhhhHHHHHH---HH--hhChHHHHHHHHhcHHHHHHHHHHhh--ccC
Q 025870 160 YVLESQHMKKFFDYIQLPNFDI----------AADAAATFKE---LL--TRHKSTVAEFLSKNYDWFFAEYNSKL--LES 222 (247)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~Fei----------aSDAf~tfke---lL--trHk~lvaefL~~Nyd~Ff~~yn~~L--l~S 222 (247)
|.+-.|..|+-.....+ .+||---|+- |+ -.|.+-.|+|+..||.+=|.-|- +. ++.
T Consensus 520 -----p~~~~Fv~~~v~q~v~~LS~s~~~~LSp~qaVLlyQq~~iL~~cLq~s~~la~~ir~~yrEEFRYfI-~~p~lek 593 (617)
T PF15087_consen 520 -----PPLLSFVGRIVKQVVKVLSASQHEPLSPSQAVLLYQQFYILLSCLQYSKQLAEHIRNNYREEFRYFI-KMPCLEK 593 (617)
T ss_pred -----CcHHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhheeeee-cchhhHh
Confidence 34445555543222222 3455444443 22 26888899999999988664442 33 222
Q ss_pred ---CCccchhhhhhhhhHhhh
Q 025870 223 ---SNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 223 ---~NYVTkRQSLKLLgel~s 240 (247)
+-|=..+..++|++|+|+
T Consensus 594 KLP~~YPItqpT~~Li~evl~ 614 (617)
T PF15087_consen 594 KLPPCYPITQPTLQLIHEVLK 614 (617)
T ss_pred hCCCCCCCchHHHHHHHHHHH
Confidence 568888899999999886
No 22
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=43.38 E-value=35 Score=29.14 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=35.2
Q ss_pred HHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHH--HHHHhc---HHHHHHHHHHhhccCCCc
Q 025870 156 SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA--EFLSKN---YDWFFAEYNSKLLESSNY 225 (247)
Q Consensus 156 ~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lva--efL~~N---yd~Ff~~yn~~Ll~S~NY 225 (247)
...+|+.+++.|.++++|++.+.|.= .-.-+...|.+.+ +||.++ ...+++.+| .++.-+++
T Consensus 23 i~~~Y~~~D~efq~~~~yl~s~~f~~-------l~~~l~~~pE~~~l~~yL~~~gldv~~~i~~i~-~~l~~~~~ 89 (179)
T PF06757_consen 23 IVQRYYLEDAEFQAAVRYLNSSEFKQ-------LWQQLEALPEVKALLDYLESAGLDVYYYINQIN-DLLGLPPL 89 (179)
T ss_pred HHHHHHHcCHHHHHHHHHHcChHHHH-------HHHHHHcCHHHHHHHHHHHHCCCCHHHHHHHHH-HHHcCCcC
Confidence 34567888889999999988776642 1122222333322 566542 333666666 56655555
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=41.58 E-value=4.2e+02 Score=31.75 Aligned_cols=151 Identities=11% Similarity=0.140 Sum_probs=96.9
Q ss_pred HHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhH----hHHHHHHH
Q 025870 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL----HYGAMLRE 150 (247)
Q Consensus 75 i~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl----~~G~mLRE 150 (247)
+.+.+.+..|+.-|..=+++.|+.++....++.+..... .+ |.++.. +.+ +++.+-. ..|.++--
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~---~I------~~Lv~L-Lls-dd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA---TI------SQLTAL-LLG-DLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh---HH------HHHHHH-hcC-CChhHHHHHHHHHHHHHhh
Confidence 446688888999998889999999999888887632111 11 222222 221 1222211 23444444
Q ss_pred HHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhh
Q 025870 151 CIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (247)
Q Consensus 151 cik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQ 230 (247)
+-.++.....+....-+..+.+..+.++=++--+|..++-.+.+.+++........+ -+.-.- .||.+++--++++
T Consensus 595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ag---aIpPLV-~LLss~~~~v~ke 670 (2102)
T PLN03200 595 ASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE---IINPCI-KLLTNNTEAVATQ 670 (2102)
T ss_pred cchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC---CHHHHH-HHHhcCChHHHHH
Confidence 444444444444556777888888889889999999999999998888777766655 223332 5777777777777
Q ss_pred hhhhhhHhhh
Q 025870 231 AVKVGKLCAS 240 (247)
Q Consensus 231 SLKLLgel~s 240 (247)
+-.-|+-|.+
T Consensus 671 AA~AL~nL~~ 680 (2102)
T PLN03200 671 SARALAALSR 680 (2102)
T ss_pred HHHHHHHHHh
Confidence 7777766663
No 24
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=41.18 E-value=81 Score=26.74 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhch
Q 025870 41 MAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 41 ~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dl 80 (247)
.+|+.|.|.-|-.-|-.+.=..|..+.+.+|++++-+.|+
T Consensus 67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDY 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4899999999999887655566677888889988887765
No 25
>PTZ00464 SNF-7-like protein; Provisional
Probab=39.42 E-value=1.6e+02 Score=26.28 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=18.9
Q ss_pred CCCCCCCC----CCChHHHHHHHHHHHHHhh
Q 025870 1 MKGLFKSK----PRTPVDIVRQTRDLIIYAN 27 (247)
Q Consensus 1 M~~lfk~~----~KtP~elVr~l~e~l~~L~ 27 (247)
|..||+++ +.||.|-++.+++.+..|+
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~ 31 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVD 31 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 77899654 3467777777777777664
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=36.58 E-value=3.9e+02 Score=25.58 Aligned_cols=103 Identities=16% Similarity=0.259 Sum_probs=60.7
Q ss_pred CHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhc-cCCCchhhhhhHHHHHHHHhhChHHHHH
Q 025870 124 NIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYI-QLPNFDIAADAAATFKELLTRHKSTVAE 202 (247)
Q Consensus 124 ~peil~~L~~gY~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~yv-~~~~FeiaSDAf~tfkelLtrHk~lvae 202 (247)
++++....+..-+++.|-...=.+|..++..+.... .+..+.+|+ +.+..++..++..+...+-.++
T Consensus 304 ~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~------ 371 (526)
T PF01602_consen 304 NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF------ 371 (526)
T ss_dssp THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH------
T ss_pred hhhhhhheecCCCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc------
Confidence 333333334434455555555555555544333333 456788888 6668888888888887766666
Q ss_pred HHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhh
Q 025870 203 FLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 203 fL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~ 241 (247)
..+++|+++..- +++..++......++--+.+++.+
T Consensus 372 --~~~~~~~v~~l~-~ll~~~~~~~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 372 --PPDAEWYVDTLL-KLLEISGDYVSNEIINVIRDLLSN 407 (526)
T ss_dssp --GSSHHHHHHHHH-HHHHCTGGGCHCHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHH-HhhhhccccccchHHHHHHHHhhc
Confidence 567778887775 677755444466776666666543
No 27
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=36.48 E-value=36 Score=30.78 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHH---HHHHhcHHHHHH
Q 025870 145 GAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA---EFLSKNYDWFFA 213 (247)
Q Consensus 145 G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lva---efL~~Nyd~Ff~ 213 (247)
=.+||-|+-+++-.|.+||.. |-+++++.+.++. ++|..++..||+
T Consensus 36 lg~LRRCL~QQa~VR~~LY~g-----------------------l~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 36 LGILRRCLTQQADVRLMLYEG-----------------------LYDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHGGGGS-HHHHHHHHHH-----------------------HHHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHhcChHHHHHHHHHH-----------------------HHHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 357899999999999999983 3366777777776 566677777765
No 28
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=36.09 E-value=1.1e+02 Score=24.17 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=41.0
Q ss_pred CCCCCCChHHHHHHHHHHHhhc----hHHHHHhhC---CCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHH
Q 025870 58 NSESEPVSEACAQLTAEFFREN----TLRLLITCL---PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDI 130 (247)
Q Consensus 58 ~~e~ep~~e~~~qLa~ei~~~d----ll~~Li~~L---~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~ 130 (247)
+++..|++....++++..++.+ .+..|...| +.=.+-..--+-++...|++. +..-+++.+..+-++|..
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n---G~~~~~~~~~~~~~~I~~ 90 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN---GSERFVDELRDHIDIIRE 90 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH---S-HHHHHHHHHTHHHHHG
T ss_pred CCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHhh
Confidence 4455677788889998888743 334444444 222222222233344444441 222345555556666666
Q ss_pred HHHhccChh-hhHhHHHHHHHHH
Q 025870 131 LIAGYENTD-MALHYGAMLRECI 152 (247)
Q Consensus 131 L~~gY~~~d-iAl~~G~mLREci 152 (247)
| ..|..+| -.-..|.-+|+-.
T Consensus 91 l-~~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 91 L-QDFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp G-GG---BBTTSTBHHHHHHHHH
T ss_pred c-ceeeccCCCCccHHHHHHHHH
Confidence 6 3332211 2334444455533
No 29
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=35.80 E-value=1.8e+02 Score=31.62 Aligned_cols=133 Identities=20% Similarity=0.276 Sum_probs=78.8
Q ss_pred HHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhH---------hHH
Q 025870 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL---------HYG 145 (247)
Q Consensus 75 i~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl---------~~G 145 (247)
.++..++.+++. .+..-+ -.++..++-.-|.--+.+.||+ +.-|++--.+.|+-- +.=
T Consensus 85 ~IR~~l~~lii~-s~n~l~---iq~a~avs~IA~~DfPdeWpTL---------~~DL~~~Ls~~D~~tn~~~L~~~h~If 151 (947)
T COG5657 85 LIRDELFSLIIS-SSNQLQ---IQNALAVSRIARLDFPDEWPTL---------VPDLLSLLSEKDMVTNENSLRVLHHIF 151 (947)
T ss_pred HHHHHHHHHHHc-ccchHH---HHHHHHHHHHHhccCcccchhH---------HHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 445555544443 333322 2456666666666666666553 333333332222222 222
Q ss_pred HHHHHHHHHHH------------HHHHHhcchhhHhhhh---hccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHH
Q 025870 146 AMLRECIRHQS------------VARYVLESQHMKKFFD---YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDW 210 (247)
Q Consensus 146 ~mLREcik~e~------------lak~iL~~~~f~~fF~---yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~ 210 (247)
.-+|.|.|.++ ++.+++.++.+|..-. +--++-|.|+=-+..-|.|+=--|.. +|+++|-+.
T Consensus 152 k~~r~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~---eFfEd~l~~ 228 (947)
T COG5657 152 KRLRRLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIP---EFFEDNLDK 228 (947)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHH
Confidence 33556666554 4677778888888765 55566677755556666666666665 999999999
Q ss_pred HHHHHHHhhccCCC
Q 025870 211 FFAEYNSKLLESSN 224 (247)
Q Consensus 211 Ff~~yn~~Ll~S~N 224 (247)
|.+++ .+|+.-.|
T Consensus 229 ~m~~F-~klls~~~ 241 (947)
T COG5657 229 FMEHF-CKLLSYSN 241 (947)
T ss_pred HHHHH-HHHHhhcc
Confidence 99999 48877444
No 30
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=34.77 E-value=2.6e+02 Score=22.97 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=57.4
Q ss_pred CCCCCh-HHHHHHHHHHHhh-----chHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHH
Q 025870 60 ESEPVS-EACAQLTAEFFRE-----NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIA 133 (247)
Q Consensus 60 e~ep~~-e~~~qLa~ei~~~-----dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~ 133 (247)
+++|.| -...++|+..+.+ .++..|...|..=+--.+--+-.|...|.++ +...++.++..|..++..+..
T Consensus 13 d~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~---G~~~f~~~~~~~~~~Ik~~~~ 89 (122)
T cd03572 13 DDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK---GNSDFKRELQRNSAQIRECAN 89 (122)
T ss_pred CCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh---CCHHHHHHHHHhHHHHHHHHH
Confidence 334444 4567777777776 4566777777765544434466777777774 334578899999999999754
Q ss_pred hccChh--hhHhHHHHHHHHH
Q 025870 134 GYENTD--MALHYGAMLRECI 152 (247)
Q Consensus 134 gY~~~d--iAl~~G~mLREci 152 (247)
.-.-|| -+-.-|...|+-.
T Consensus 90 f~g~~Dp~~Gd~~~~~VR~~A 110 (122)
T cd03572 90 YKGPPDPLKGDSLNEKVREEA 110 (122)
T ss_pred cCCCCCcccCcchhHHHHHHH
Confidence 333233 4555677777655
No 31
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=34.56 E-value=2.6e+02 Score=22.95 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHh
Q 025870 176 LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLC 238 (247)
Q Consensus 176 ~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel 238 (247)
....++...+...+|.++..+.. ....++.. ..+..+ ...|.|+++=||++++.+|+-+
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G-~~~v~~~~--~~v~~i-~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYG-LEAVLSHP--DSVNLI-ALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHH-HHHHHCSS--SHHHHH-HHT--TTSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHH-HHHHHcCc--HHHHHH-HHHHCCCCHHHHHHHHHHHHHH
Confidence 35667788888899888886643 33344422 355666 4789999999999999998754
No 32
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=33.78 E-value=26 Score=21.23 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.0
Q ss_pred hhccCCCccchhhhhhhhhHhhhh
Q 025870 218 KLLESSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 218 ~Ll~S~NYVTkRQSLKLLgel~s~ 241 (247)
++++++++-.|..+.+-||++..+
T Consensus 7 ~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 7 QLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 789999999999999999998764
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=33.43 E-value=3e+02 Score=23.36 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=64.3
Q ss_pred CCCChhhhhhHHHHHHHHhhhccCCCc--chhHHhhcCHHHHHHHHHhccChh--hhHhHHHHHHHHHHH-----HHHHH
Q 025870 89 PKLNLEARKDATQVVANLQRQQVHSKL--IASDYLEANIDLLDILIAGYENTD--MALHYGAMLRECIRH-----QSVAR 159 (247)
Q Consensus 89 ~~L~FE~RKdv~~If~~llr~~~~~r~--p~v~Yl~~~peil~~L~~gY~~~d--iAl~~G~mLREcik~-----e~lak 159 (247)
+.-+|+.|.++.+-...+++....... ..++++. +++..+...-++.- ++-++-..+.+++++ ++.+.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~---~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR---QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH------HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH---HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 566888888888888888875521111 1123332 55555555554432 333333333333322 11111
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhc-HHHH-HHHHHHhhccCCCccchhhhhhhhhH
Q 025870 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKN-YDWF-FAEYNSKLLESSNYITRRQAVKVGKL 237 (247)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~N-yd~F-f~~yn~~Ll~S~NYVTkRQSLKLLge 237 (247)
. .+-.+++-+..++=-|+..|-.++..+... -+ ..++ +.... ..+.+.|=-.|+.++..|..
T Consensus 94 ~-----~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~----------~~~~~~~~~~~l~-~~~~~Kn~~vR~~~~~~l~~ 157 (228)
T PF12348_consen 94 I-----LLPPLLKKLGDSKKFIREAANNALDAIIES----------CSYSPKILLEILS-QGLKSKNPQVREECAEWLAI 157 (228)
T ss_dssp H-----HHHHHHHGGG---HHHHHHHHHHHHHHHTT----------S-H--HHHHHHHH-HHTT-S-HHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHccccHHHHHHHHHHHHHHHHH----------CCcHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHH
Confidence 1 122333333344444666666666665542 12 2344 55554 67888888888999999988
Q ss_pred hhhhhh
Q 025870 238 CASQWV 243 (247)
Q Consensus 238 l~s~~~ 243 (247)
++..|-
T Consensus 158 ~l~~~~ 163 (228)
T PF12348_consen 158 ILEKWG 163 (228)
T ss_dssp HHTT--
T ss_pred HHHHcc
Confidence 888875
No 34
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.43 E-value=6.7e+02 Score=27.41 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhc---cCCCcchhHHhhcCHHHHHHHHHhccChhhh
Q 025870 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQ---VHSKLIASDYLEANIDLLDILIAGYENTDMA 141 (247)
Q Consensus 65 ~e~~~qLa~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~---~~~r~p~v~Yl~~~peil~~L~~gY~~~diA 141 (247)
.|.+..|...++.+-++ |-|+|++.=...+-|.. +|.. .=|-++..|=+-|.++|+-
T Consensus 21 aETI~kLcDRvessTL~------------eDRR~A~rgLKa~srkYR~~Vga~--------Gmk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLL------------EDRRDAVRGLKAFSRKYREEVGAQ--------GMKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HhHHHHHHHHHhhccch------------hhHHHHHHHHHHHHHHHHHHHHHc--------ccHHHHHHHhhccCCHHHH
Confidence 35577777777776554 67999887666665522 2211 1267788888888888764
Q ss_pred HhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhcc
Q 025870 142 LHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLE 221 (247)
Q Consensus 142 l~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~ 221 (247)
-.+=..+--.++|+. +-.-++.++ .|.|-=.-|-|.++..+..+.=-+. +.++||
T Consensus 81 k~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~lll~-----~~e~~D----- 135 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNITLLLQ-----SLEEFD----- 135 (970)
T ss_pred HHHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHHHHHH-----HHHhhc-----
Confidence 322222222222222 334556666 6666667778888877655443221 333443
Q ss_pred CCCccchhhhhhhhhHhhhhh
Q 025870 222 SSNYITRRQAVKVGKLCASQW 242 (247)
Q Consensus 222 S~NYVTkRQSLKLLgel~s~~ 242 (247)
+-.||-+++||.-|+|+-
T Consensus 136 ---F~VR~~aIqLlsalls~r 153 (970)
T KOG0946|consen 136 ---FHVRLYAIQLLSALLSCR 153 (970)
T ss_pred ---hhhhhHHHHHHHHHHhcC
Confidence 778999999999999874
No 35
>PF06393 BID: BH3 interacting domain (BID); InterPro: IPR010479 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. BID is a member of the Bcl-2 superfamily of proteins that are key regulators of programmed cell death, hence this family is related to the Apoptosis regulator Bcl-2 protein BH domain. BID is a pro-apoptotic member of the Bcl-2 superfamily and as such posses the ability to target intracellular membranes and contains the BH3 death domain. The activity of BID is regulated by a Caspase 8-mediated cleavage event, exposing the BH3 domain and significantly changing the surface charge and hydrophobicity, which causes a change of cellular localisation [].; GO: 0043065 positive regulation of apoptosis, 0005737 cytoplasm; PDB: 2BID_A 1ZY3_B 2KBW_B 1DDB_A 2VOI_B.
Probab=31.90 E-value=95 Score=27.74 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhch------------HHHHHhhCCCCChhhhhhHHHHHHHH
Q 025870 39 DKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT------------LRLLITCLPKLNLEARKDATQVVANL 106 (247)
Q Consensus 39 ~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dl------------l~~Li~~L~~L~FE~RKdv~~If~~l 106 (247)
+-+..++..|.+|=.-|-. +-.|..|..||+.+.+.++ +..+++..| .|+|. --+..+++-+
T Consensus 83 Eiir~IA~qLAqIGD~me~----sI~p~lV~~La~qf~n~~LseEdrr~~LAaavq~lmqt~P-~Dme~-Eka~L~ltML 156 (196)
T PF06393_consen 83 EIIRRIARQLAQIGDRMER----SIQPSLVNNLAQQFRNSNLSEEDRRRCLAAAVQQLMQTVP-KDMEQ-EKAMLVLTML 156 (196)
T ss_dssp HCHHHHHHHHHHHHHHHHC----C-TTTTHHHHHHHHHSCCCCCCCCCHHHHHHHHHHHCCS--STCHC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHCC-ccHHH-HHHHHHHHHH
Confidence 3346789999998888754 4667889999999998843 455665553 46663 3467788888
Q ss_pred hhhccCCCcc
Q 025870 107 QRQQVHSKLI 116 (247)
Q Consensus 107 lr~~~~~r~p 116 (247)
|-.++-+..|
T Consensus 157 LaKKVa~htP 166 (196)
T PF06393_consen 157 LAKKVADHTP 166 (196)
T ss_dssp HHHHHHHH-T
T ss_pred HHHHHHHhCc
Confidence 8888755554
No 36
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.96 E-value=1.2e+02 Score=27.44 Aligned_cols=66 Identities=26% Similarity=0.397 Sum_probs=37.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcccCchhhhHHHHH-H-HHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhh
Q 025870 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-A-ELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRE 78 (247)
Q Consensus 1 M~~lfk~~~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-e-e~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~ 78 (247)
|. +|+++ +||.|+.|.-+-.|++-- ++-.+|... + +=-|.+..||..-- .-+-+++.-+|..+.+.
T Consensus 1 m~-lFgk~-~tp~e~Lr~nqRal~~a~-----ReleRer~~le~qeKklvaeIKk~AK-----~gq~~A~KimAkdLvRt 68 (224)
T KOG3230|consen 1 MD-LFGKK-KTPAELLRENQRALNKAT-----RELERERQKLELQEKKLVAEIKKTAK-----QGQMDAVKIMAKDLVRT 68 (224)
T ss_pred CC-cccCC-CCHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHH
Confidence 45 88887 899999998877777532 222222222 2 22335556665431 23345566666665554
No 37
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=29.74 E-value=2.4e+02 Score=25.39 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHhhcccCchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhchHHHHHhhCCCC
Q 025870 12 PVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKL 91 (247)
Q Consensus 12 P~elVr~l~e~l~~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~L~~L 91 (247)
-.+.++.+.+.+.. + +..+|+...+..++....|.+. +|++-.+.-+.+.++..
T Consensus 10 ~~~~a~~l~~~ir~-------k-----~~~eei~~~l~~i~~~~~~~~~-~~~~~~i~v~~q~ll~~------------- 63 (253)
T PF09090_consen 10 FHALAQKLLDLIRK-------K-----APPEEISELLEEIEEPAEEHGS-DFDKFVIDVFVQCLLHI------------- 63 (253)
T ss_dssp THHHHHHHHHHHHT-------T-------HHHHHHHHTTS-------------HHHHHHHHHHHHHH-------------
T ss_pred cHHHHHHHHHHHHc-------C-----CCHHHHHHHHHhcccccccccc-chhhHHHHHHHHHHHHh-------------
Confidence 35677777777651 0 1137899999999988887766 66655566666665543
Q ss_pred ChhhhhhHHHHHHHHhhhccCCCcchhHHh-----hcCHHHHHHHHHhccC-hh-hhHhHHHHHHH-HHHHHHHHHHHhc
Q 025870 92 NLEARKDATQVVANLQRQQVHSKLIASDYL-----EANIDLLDILIAGYEN-TD-MALHYGAMLRE-CIRHQSVARYVLE 163 (247)
Q Consensus 92 ~FE~RKdv~~If~~llr~~~~~r~p~v~Yl-----~~~peil~~L~~gY~~-~d-iAl~~G~mLRE-cik~e~lak~iL~ 163 (247)
+.|..++.++.+=|+.. ....+ ..+-.||..+++.+.+ |. +.+.+-.||+- -+.-.++++.++.
T Consensus 64 ---GSkS~SH~~~~lery~~-----~Lk~l~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~w~f~ 135 (253)
T PF09090_consen 64 ---GSKSFSHVLSALERYKE-----VLKELEAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVNWVFS 135 (253)
T ss_dssp ---TTTSHHHHHHHHHHTHH-----HHHHH-TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHHHHTS
T ss_pred ---cCchHHHHHHHHHHHHH-----HHHHhccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHHHHcC
Confidence 46677777776666542 12222 2233455555555542 22 23333333332 3334556666665
Q ss_pred ch
Q 025870 164 SQ 165 (247)
Q Consensus 164 ~~ 165 (247)
++
T Consensus 136 ~~ 137 (253)
T PF09090_consen 136 PE 137 (253)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 38
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=29.26 E-value=68 Score=25.62 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=33.3
Q ss_pred HHHHHhcHHHHHHHHHHhhccCC---CccchhhhhhhhhHhhh
Q 025870 201 AEFLSKNYDWFFAEYNSKLLESS---NYITRRQAVKVGKLCAS 240 (247)
Q Consensus 201 aefL~~Nyd~Ff~~yn~~Ll~S~---NYVTkRQSLKLLgel~s 240 (247)
++||..|+=..+..++..+..+. .|.-|+++++=+|++..
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~ 44 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK 44 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH
Confidence 68999998777777776677776 88999999999999875
No 39
>PHA02800 hypothetical protein; Provisional
Probab=28.15 E-value=3.6e+02 Score=23.30 Aligned_cols=87 Identities=13% Similarity=0.212 Sum_probs=47.2
Q ss_pred HHhccChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhh-hccCC---Cchhh------hhhHHHHHHHHhhChHHHH
Q 025870 132 IAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFD-YIQLP---NFDIA------ADAAATFKELLTRHKSTVA 201 (247)
Q Consensus 132 ~~gY~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~-yv~~~---~Feia------SDAf~tfkelLtrHk~lva 201 (247)
-+|++++ +-=.||.+..|..++..+|+.-.....+-..-. +.++. ..-+. -|-....|+++----.+..
T Consensus 44 WR~ng~~-~~~~cGKIFKELmKyD~lAkk~~~~~d~~~~KNM~l~~Dk~~syvLni~e~~~~D~i~~~Ke~IG~~AILse 122 (161)
T PHA02800 44 WRFNGGK-VDENTGKIFKEFFKYDTLAKWRFSKRDFEQCKNMLLENDKNTSYVLDVPKPEKNDPLLNLKELIGFLAILSE 122 (161)
T ss_pred hhcCCCh-hhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhccccchhccchhhccccHHHHHHHHHHHHHHHHH
Confidence 4555444 555999999999999999997753333311111 11111 11111 2445556666553333333
Q ss_pred HH-HHhcHHHHHHHHHHhhc
Q 025870 202 EF-LSKNYDWFFAEYNSKLL 220 (247)
Q Consensus 202 ef-L~~Nyd~Ff~~yn~~Ll 220 (247)
|. +..||+..|.-.| .+.
T Consensus 123 eIk~D~~F~~lFn~l~-~~~ 141 (161)
T PHA02800 123 EIKKDTKFFALFNIMN-SLF 141 (161)
T ss_pred HhhhhhhHHHHHHHHH-HHH
Confidence 44 4567777776666 343
No 40
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.73 E-value=3e+02 Score=27.96 Aligned_cols=155 Identities=19% Similarity=0.132 Sum_probs=79.5
Q ss_pred hhHHHHHHHH---HHHHHHHHhhhccCCCCCCChH-HHHHHHHHHHhhc-hHHHHHhhCCCCChhhhhhHHHHHHHHhh-
Q 025870 35 SKREDKMAEL---CKNIRELKSILYGNSESEPVSE-ACAQLTAEFFREN-TLRLLITCLPKLNLEARKDATQVVANLQR- 108 (247)
Q Consensus 35 ~k~~~k~ee~---sK~L~~mK~iL~G~~e~ep~~e-~~~qLa~ei~~~d-ll~~Li~~L~~L~FE~RKdv~~If~~llr- 108 (247)
+||-++.||+ .|.|.+|..--...+...|+.| ....++++..+-. +|+.++.....=| ++=-++-|+=.++-|
T Consensus 212 skR~~aleev~n~vk~l~em~l~~s~eg~a~pd~E~~lq~v~~~ce~lr~tlfrlaset~dnD-~aL~eILqanD~ltrv 290 (594)
T KOG1086|consen 212 SKRVKALEEVNNNVKLLEEMLLDYSQEGNASPDNELLLQEVYNRCEQLRPTLFRLASETEDND-PALAEILQANDNLTRV 290 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcccccCc-HHHHHHHhhhhhHHhh
Confidence 3455556764 4566666655556677788888 6777887777654 6666666554432 233445555444444
Q ss_pred ---hc---cCCCcchhHHhhcCHHHHHHHHHh------------cc--ChhhhHhHHHHHHHHHHHHHHHHHHhcch---
Q 025870 109 ---QQ---VHSKLIASDYLEANIDLLDILIAG------------YE--NTDMALHYGAMLRECIRHQSVARYVLESQ--- 165 (247)
Q Consensus 109 ---~~---~~~r~p~v~Yl~~~peil~~L~~g------------Y~--~~diAl~~G~mLREcik~e~lak~iL~~~--- 165 (247)
++ -|.+-+.-.--..-||.-..|+.- +. -+++.-..|+.|-+.+ ...-+.++
T Consensus 291 i~~ykt~~~G~~~~g~a~t~slpd~q~~l~~n~Pa~~~p~P~~~~~~gp~~~~s~~~SlL~~~l-----~slglsdp~~s 365 (594)
T KOG1086|consen 291 INLYKTPKEGNVANGSARTQSLPDSQSLLVDNTPAGTVPCPKNPFCPGPPQMRSLEGSLLDNEL-----ESLGLSDPKPS 365 (594)
T ss_pred hhhcccccccccccccceeccCCcchhheeecCCCCCCCCCCCCCCCCCcccccchhhHHHHHH-----HhcccCCCCCC
Confidence 11 111111111112235554444332 11 2455666777775443 33344443
Q ss_pred ---hhHhhhhhccCCCchh-------hhhhHHHHHHHHhh
Q 025870 166 ---HMKKFFDYIQLPNFDI-------AADAAATFKELLTR 195 (247)
Q Consensus 166 ---~f~~fF~yv~~~~Fei-------aSDAf~tfkelLtr 195 (247)
.-|..++=+++++=.- +|-||.|.-.+..+
T Consensus 366 ~~~s~q~~~~~~~np~ss~~P~~sv~~sS~~~~lfl~gk~ 405 (594)
T KOG1086|consen 366 PMVSGQNMTQPVQNPSSSASPRGSVPASSAFETLFLLGKR 405 (594)
T ss_pred CCcchhhcCccccCCCCCCCCCCCCCCccchhhHHhhCCC
Confidence 3577777565554332 33455555444444
No 41
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=27.10 E-value=3.4e+02 Score=25.97 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=17.3
Q ss_pred HhhhhhccCCCchhhhhhHHHHHHHHhhC
Q 025870 168 KKFFDYIQLPNFDIAADAAATFKELLTRH 196 (247)
Q Consensus 168 ~~fF~yv~~~~FeiaSDAf~tfkelLtrH 196 (247)
..+.+++..++-++.-=|+.++..+..++
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 34445555666666666666666666665
No 42
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=26.97 E-value=95 Score=23.18 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=28.1
Q ss_pred CCCChHHHHHHHHHHHH---HhhcccCchhhhHHHHHHHHHHHHHHHHhhhc
Q 025870 8 KPRTPVDIVRQTRDLII---YANRSADVRESKREDKMAELCKNIRELKSILY 56 (247)
Q Consensus 8 ~~KtP~elVr~l~e~l~---~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~ 56 (247)
+.+|+.|+...+.|.-. .|..........+..+.-++-|.+.+++.++.
T Consensus 9 R~~s~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IARi~Tv~~ 60 (69)
T COG0255 9 REKSVEELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIARILTVLR 60 (69)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45789999888777633 22211000111122345678888888888774
No 43
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=23.56 E-value=4.6e+02 Score=22.23 Aligned_cols=183 Identities=18% Similarity=0.175 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHh
Q 025870 42 AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYL 121 (247)
Q Consensus 42 ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl 121 (247)
++--..|..++.++.|.. +...++.+..... +++..++..+..+-----|.+..+...+.++-... .-.|
T Consensus 22 ~~r~~al~~L~~l~~~~~-~~~~~~~~~~~l~-----~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~---~~~~- 91 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGNA-PEDFPPDFVECLR-----QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH---FEPY- 91 (228)
T ss_dssp HHHHHHHHHHHHHHHH-B------HHHHHHHH--------HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG---GHHH-
T ss_pred HHHHHHHHHHHHHHHcCC-ccccHHHHHHHHH-----HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh---HHHH-
Confidence 455667888999998872 2222222222111 45566666666554444566666666665533221 1112
Q ss_pred hcCHHHHHHHHHhccC--hhhhHhHHHHHHHHHHHHH-HHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChH
Q 025870 122 EANIDLLDILIAGYEN--TDMALHYGAMLRECIRHQS-VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKS 198 (247)
Q Consensus 122 ~~~peil~~L~~gY~~--~diAl~~G~mLREcik~e~-lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~ 198 (247)
-+.++..|+.-..+ .-|.-.+...|..++++=. ..+++ +.-+.......|=.+-..+..-+..++.+++.
T Consensus 92 --~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 92 --ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp --HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred --HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 14455555554433 3455555666666555433 12221 33444567788888888888888888888882
Q ss_pred HHHHHHHh-cHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhhh
Q 025870 199 TVAEFLSK-NYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQW 242 (247)
Q Consensus 199 lvaefL~~-Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~~ 242 (247)
-.+.+-.. .++.+-... .+++..+|=-+|..+-+.+..+-+.|
T Consensus 165 ~~~~l~~~~~~~~l~~~l-~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKAL-VKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp --GGG--HHHHHHHHHHH-HHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 22221111 235666677 48899999999999999999998877
No 44
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.83 E-value=8.6e+02 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=19.7
Q ss_pred hhhccCCCcchhHHhhcCHHHHHHHHHhc
Q 025870 107 QRQQVHSKLIASDYLEANIDLLDILIAGY 135 (247)
Q Consensus 107 lr~~~~~r~p~v~Yl~~~peil~~L~~gY 135 (247)
.|...+...|.|++|. ||.+++.|++.-
T Consensus 308 y~~Y~~~~pPPV~lLR-~P~~l~lLld~L 335 (584)
T PF04858_consen 308 YRMYSSPDPPPVELLR-HPQFLDLLLDAL 335 (584)
T ss_pred HHHhccCCCCCchhhc-CHHHHHHHHHHH
Confidence 3333466678788776 999999996543
No 45
>cd00933 barnase Barnase, a member of the family of homologous microbial ribonucleases, catalyses the cleavage of single-stranded RNA via a two-step mechanism thought to be similar to that of pancreatic ribonuclease. The mechanism involves a transesterification to give a 2', 3'-cyclic phosphate intermediate, followed by hydrolysis to yield a 3' nucleotide. The active site residues His and Glu act as general acid-base groups during catalysis, while the Arg and Lys residues are important in binding the reactive phosphate, the latter probably binding the phosphate in the transition state. Barstar, a small 89 residue intracellular protein is a natural inhibitor of Barnase.
Probab=22.43 E-value=37 Score=27.55 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=11.9
Q ss_pred cCCCccchhhhhhh
Q 025870 221 ESSNYITRRQAVKV 234 (247)
Q Consensus 221 ~S~NYVTkRQSLKL 234 (247)
--+||+||+|+-+|
T Consensus 17 LP~~yiTK~ea~~l 30 (107)
T cd00933 17 LPDNYITKSQAKEL 30 (107)
T ss_pred CCcceEeHHHHHHh
Confidence 46899999999876
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=22.14 E-value=1.2e+02 Score=27.76 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=37.1
Q ss_pred hhhhhhHHHHHHHHhhChHHHHHHHHh-------cHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhh
Q 025870 180 DIAADAAATFKELLTRHKSTVAEFLSK-------NYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 180 eiaSDAf~tfkelLtrHk~lvaefL~~-------Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~ 241 (247)
|+--=....+-|++.-++..+.-|+.. .|..|+ +++++++..+..+|.++|+.|+++
T Consensus 72 d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-----~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 72 DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-----KLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-----HH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-----HHhcCCCHHHHHHHHHHHHHHHHc
Confidence 333334566778888777666655551 355555 478888888899999999999876
No 47
>COG4699 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.69 E-value=94 Score=25.63 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=22.3
Q ss_pred HHHHHHHHhcHHHHHHHHHHhh-----ccCCCccchh
Q 025870 198 STVAEFLSKNYDWFFAEYNSKL-----LESSNYITRR 229 (247)
Q Consensus 198 ~lvaefL~~Nyd~Ff~~yn~~L-----l~S~NYVTkR 229 (247)
.+||+|=-+.|+.-|++|+ +| -+.+||+||.
T Consensus 23 dIv~~~qf~d~~~alkyYq-q~w~~l~~~~p~y~skk 58 (120)
T COG4699 23 DIVAKYQFSDFYDALKYYQ-QLWFRLKVNFPNYVSKK 58 (120)
T ss_pred hhHHHHhhhHHHHHHHHHH-HHHHHHHHhCcccccch
Confidence 4677666666777777886 65 4679999984
No 48
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.36 E-value=1.3e+03 Score=26.50 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHHHHHhhcccCchhhhHHHHHHHHHHHHH-HHHhhhccCCCCCCChHHHHHHHHHHHhhchHHHHHhh
Q 025870 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIR-ELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITC 87 (247)
Q Consensus 9 ~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~ee~sK~L~-~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 87 (247)
+=|-.|+++.|++...-|.+.. ++. .. .+.+.+... -++..+....|.+- +|--..|-+|+|.. .
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~--qd~-~~--~~~~~pl~~~l~~~~~L~h~d~dv------rllvacCvseilRi---~ 81 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLD--QDN-LD--LASLLPLADHLIKDFLLKHKDKDV------RLLVACCVSEILRI---Y 81 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhcc--cCc-hh--HHHHHHHHHHHhhHHHhcCCCcCh------hHHHHHHHHHHHHH---h
Confidence 4456788888888766655432 122 11 123444333 24666665555553 35555555555554 4
Q ss_pred CCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHH
Q 025870 88 LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDIL 131 (247)
Q Consensus 88 L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L 131 (247)
-|.+||+.- +...||.-.+++.-|-.-+..-|.-+++.++.+|
T Consensus 82 aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl 124 (1266)
T KOG1525|consen 82 APEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETL 124 (1266)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHH
Confidence 577888877 8888999999977554445556777777777776
No 49
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=21.35 E-value=5.2e+02 Score=23.51 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=60.7
Q ss_pred hhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccC
Q 025870 97 KDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQL 176 (247)
Q Consensus 97 Kdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~ 176 (247)
-++.++|+.+-+.+..+.+|.. .=-+|+...||+..-.+...+++ +.|-+..++=+.
T Consensus 25 ~fC~~~f~~~sK~~kks~fhvs--------------------NKlIHlrNVLrrlls~qcs~~ii---~ell~lm~kn~i 81 (225)
T PHA03074 25 IFCESVFQTSSKVQKKSNFHVS--------------------NKLIHLRNVLRRLLSNQCSGEII---SELLELMNKNQI 81 (225)
T ss_pred ecHHHHHhhhhhhhhhcccccc--------------------cceeeHHHHHHHHHHhHhhHHHH---HHHHHHHHHccC
Confidence 4677888888776655554422 22356677777666543333322 123333333333
Q ss_pred CCchhhhhhHHHHHHHHhhChHHHHHHHHh-------cHHHHHHHHHHhhccCCCccchhhhhhhhhHhh
Q 025870 177 PNFDIAADAAATFKELLTRHKSTVAEFLSK-------NYDWFFAEYNSKLLESSNYITRRQAVKVGKLCA 239 (247)
Q Consensus 177 ~~FeiaSDAf~tfkelLtrHk~lvaefL~~-------Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~ 239 (247)
+.=||. -..|++||.+ ||-..|+-+| +-..+..+.|+-. +-=..|+.
T Consensus 82 ~~~did--------------an~vs~fLK~~~~inkKdYklvfeiiN-~~~~e~lnLttek-Inei~eIF 135 (225)
T PHA03074 82 STKDVD--------------ANFVSSFLKAKERINKKDYKLVFEIIN-QVKDEKLNLTTEK-INEVVEIF 135 (225)
T ss_pred Chhhhh--------------HHHHHHHHHHHHhcCchhHHHHHHHHH-HhhhhcccccHHH-HHHHHHHH
Confidence 333332 2378888864 6999999999 8888888888743 44344443
No 50
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=21.14 E-value=1e+02 Score=29.40 Aligned_cols=63 Identities=16% Similarity=0.038 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHhhChHHHH-HHHHhcHHHHHHHHHHhhccC------CCccchhhhhhhhhHhhhhhhe
Q 025870 182 AADAAATFKELLTRHKSTVA-EFLSKNYDWFFAEYNSKLLES------SNYITRRQAVKVGKLCASQWVI 244 (247)
Q Consensus 182 aSDAf~tfkelLtrHk~lva-efL~~Nyd~Ff~~yn~~Ll~S------~NYVTkRQSLKLLgel~s~~~~ 244 (247)
-.||+.+|-..|..+..+-. +=+.++.+.|.......+..+ .+-=.--||||+||-++++.-|
T Consensus 10 r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i 79 (372)
T PF12231_consen 10 RLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEI 79 (372)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHH
Confidence 35999998888875543222 334455665555443222221 0111124999999999988654
No 51
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.45 E-value=2.8e+02 Score=27.77 Aligned_cols=89 Identities=24% Similarity=0.378 Sum_probs=53.8
Q ss_pred CcchhHHhhcCHHHHHHHHHhccChhhhHhHHHHH----HHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHH
Q 025870 114 KLIASDYLEANIDLLDILIAGYENTDMALHYGAML----RECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATF 189 (247)
Q Consensus 114 r~p~v~Yl~~~peil~~L~~gY~~~diAl~~G~mL----REcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tf 189 (247)
.-||.+|...-|+.+-...-|-...+..-....-+ -.=+-||+|- ..+.......|+.-+...+|. |
T Consensus 31 ~~PTs~~~~~lYe~il~~~mgl~~~~l~~r~n~~~~~~EN~ei~~~sL~-~~~l~ki~~~Fl~~i~v~dF~--------~ 101 (446)
T KOG4438|consen 31 LTPTSDYVSPLYEVILEYYMGLDEEELLQRDNEALEQLENPEIHAESLQ-FKLLCKILDMFLMNIGVLDFS--------F 101 (446)
T ss_pred cCCCcccchhHHHHHHHHHHhhhHHHHhhhhHHHHhcccCHHHHHHHHH-HHHHHHHHHHHHHhcCcCCCc--------h
Confidence 35888999888877776666654333222221100 0012355555 455556788999999999996 4
Q ss_pred HHHHhhChHHHHHHHHh--cHHHH
Q 025870 190 KELLTRHKSTVAEFLSK--NYDWF 211 (247)
Q Consensus 190 kelLtrHk~lvaefL~~--Nyd~F 211 (247)
+|||..-..=..-||+. ||..|
T Consensus 102 ~DLlkPes~Rtq~~LSavvNfa~f 125 (446)
T KOG4438|consen 102 KDLLKPESSRTQRFLSAVVNFALF 125 (446)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHH
Confidence 78886555556666663 54443
No 52
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=20.37 E-value=47 Score=28.62 Aligned_cols=17 Identities=18% Similarity=0.581 Sum_probs=15.7
Q ss_pred ChhhhHhHHHHHHHHHH
Q 025870 137 NTDMALHYGAMLRECIR 153 (247)
Q Consensus 137 ~~diAl~~G~mLREcik 153 (247)
+|||.-|+|+|+|-|.-
T Consensus 9 ~PeIP~NTGNI~R~ca~ 25 (155)
T COG0219 9 QPEIPPNTGNIIRTCAA 25 (155)
T ss_pred CCCCCCchhHHHHHHHh
Confidence 79999999999999983
No 53
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=20.30 E-value=86 Score=28.02 Aligned_cols=87 Identities=18% Similarity=0.343 Sum_probs=55.2
Q ss_pred HHHhhhccCCCCCCCh-HHHHHHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCC---CcchhHHhhc-C
Q 025870 50 ELKSILYGNSESEPVS-EACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHS---KLIASDYLEA-N 124 (247)
Q Consensus 50 ~mK~iL~G~~e~ep~~-e~~~qLa~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~---r~p~v~Yl~~-~ 124 (247)
|.+.|++...|.|--- --|.-+---||++|=+..+ ++|.+-.+|--.||+++.. ...+.+-|.. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyr~d~v~~i----------~~k~~~il~~~al~~~~~~~~~~~~~~~~LSpRE 138 (198)
T PRK15201 69 QLRVIICNKCDKEKLMFRPCLYMLPHIYREDDVEEI----------TRKMILILHKRALRHSVPSGICHYCTTRHFSVTE 138 (198)
T ss_pred eeEEEEeccccchhhhhchhHhhcchhhccccHHHH----------HHHHHHHHHHHHHHhhCCchhccccCCCCCCHHH
Confidence 4456666665554211 0144455567777766554 4788888888899987643 1122222322 4
Q ss_pred HHHHHHHHHhccChhhhHhHHH
Q 025870 125 IDLLDILIAGYENTDMALHYGA 146 (247)
Q Consensus 125 peil~~L~~gY~~~diAl~~G~ 146 (247)
-+|+..+..|+.+.|||-.-|.
T Consensus 139 rEVLrLLAqGkTnKEIAe~L~I 160 (198)
T PRK15201 139 RHLLKLIASGYHLSETAALLSL 160 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHhCC
Confidence 7999999999999999876553
Done!