Query 025870
Match_columns 247
No_of_seqs 113 out of 218
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 19:27:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upk_A MO25 protein; transfera 100.0 1.8E-92 6E-97 656.4 24.0 236 1-241 3-239 (341)
2 4db6_A Armadillo repeat protei 96.3 0.066 2.3E-06 43.0 12.2 162 71-241 46-210 (210)
3 4hxt_A De novo protein OR329; 96.2 0.16 5.5E-06 41.2 14.2 161 73-242 80-243 (252)
4 4db8_A Armadillo-repeat protei 96.2 0.21 7.1E-06 41.1 14.8 159 74-241 91-252 (252)
5 4db8_A Armadillo-repeat protei 95.7 0.13 4.3E-06 42.4 11.5 159 73-240 48-209 (252)
6 1xqr_A HSPBP1 protein; armadil 95.7 1.1 3.7E-05 39.9 18.9 208 14-241 25-239 (296)
7 4hxt_A De novo protein OR329; 95.7 0.31 1.1E-05 39.4 13.5 161 71-240 36-199 (252)
8 2jdq_A Importin alpha-1 subuni 93.7 2.2 7.6E-05 37.6 15.0 156 75-240 145-305 (450)
9 2jdq_A Importin alpha-1 subuni 93.3 1.7 5.8E-05 38.4 13.4 161 74-240 271-443 (450)
10 4b8j_A Importin subunit alpha- 93.0 2.8 9.6E-05 38.5 14.9 160 72-240 321-496 (528)
11 4db6_A Armadillo repeat protei 92.8 0.9 3.1E-05 36.2 10.0 150 83-241 16-168 (210)
12 1wa5_B Importin alpha subunit; 91.2 5.5 0.00019 36.7 14.7 157 75-240 211-370 (530)
13 1wa5_B Importin alpha subunit; 90.4 10 0.00036 34.8 15.8 160 72-240 334-510 (530)
14 1u6g_C TIP120 protein, CAND1; 85.8 3 0.0001 42.8 9.6 148 80-241 49-205 (1230)
15 1jdh_A Beta-catenin; beta-cate 85.0 20 0.00069 32.2 13.9 153 78-239 16-171 (529)
16 2z6g_A B-catenin; FULL-length, 84.6 25 0.00085 34.8 15.4 154 77-239 148-304 (780)
17 2z6h_A Catenin beta-1, beta-ca 82.9 27 0.00092 33.2 14.3 155 76-239 11-168 (644)
18 3grl_A General vesicular trans 82.8 33 0.0011 34.3 15.2 148 47-197 82-244 (651)
19 3nmw_A APC variant protein; AR 82.4 11 0.00038 34.1 10.9 160 74-241 165-335 (354)
20 3nmz_A APC variant protein; pr 82.0 16 0.00055 34.4 12.2 161 73-241 280-451 (458)
21 3qml_C Protein SLS1, nucleotid 81.5 13 0.00045 34.0 11.0 52 78-134 70-122 (315)
22 4b8j_A Importin subunit alpha- 80.4 34 0.0012 31.1 18.4 159 73-240 280-443 (528)
23 4fdd_A Transportin-1; heat rep 79.5 49 0.0017 32.3 17.1 146 82-241 93-245 (852)
24 2qk2_A LP04448P; mini spindles 79.3 14 0.00048 30.3 9.8 137 90-242 68-207 (242)
25 3tpo_A Importin subunit alpha- 79.1 40 0.0014 31.2 16.3 158 73-239 287-448 (529)
26 2z6h_A Catenin beta-1, beta-ca 78.3 47 0.0016 31.5 15.5 156 75-240 348-527 (644)
27 2x19_B Importin-13; nuclear tr 77.1 59 0.002 32.0 16.9 62 179-243 787-849 (963)
28 1jdh_A Beta-catenin; beta-cate 76.3 19 0.00066 32.3 10.5 153 77-240 141-295 (529)
29 1qgr_A Protein (importin beta 73.6 18 0.00063 34.7 10.1 143 91-240 49-203 (876)
30 4fdd_A Transportin-1; heat rep 73.4 20 0.0007 35.0 10.5 150 82-240 51-203 (852)
31 3ul1_B Importin subunit alpha- 73.0 56 0.0019 30.1 13.1 158 73-239 268-429 (510)
32 2z6g_A B-catenin; FULL-length, 72.9 65 0.0022 31.8 14.1 157 74-240 483-663 (780)
33 2vgl_A Adaptor protein complex 72.4 54 0.0018 31.6 13.1 85 17-106 11-101 (621)
34 1ibr_B P95, importin beta-1 su 71.1 22 0.00074 31.1 9.2 144 90-240 48-203 (462)
35 1upk_A MO25 protein; transfera 71.1 57 0.002 30.1 12.3 143 70-215 155-306 (341)
36 2bpt_A Importin beta-1 subunit 65.9 94 0.0032 29.6 14.5 155 79-241 134-296 (861)
37 1qgr_A Protein (importin beta 65.7 96 0.0033 29.6 16.5 153 79-241 128-289 (876)
38 4hat_C Exportin-1; heat repeat 65.1 63 0.0022 33.4 12.5 80 136-215 816-904 (1023)
39 2bnx_A Diaphanous protein homo 64.1 65 0.0022 29.5 11.3 153 8-194 2-184 (386)
40 3gjx_A Exportin-1; transport, 61.4 76 0.0026 33.3 12.3 78 136-215 842-928 (1073)
41 3eg5_B Protein diaphanous homo 61.1 98 0.0034 28.3 11.9 103 8-140 64-176 (383)
42 1w63_A Adapter-related protein 60.0 1.2E+02 0.0041 28.9 15.8 43 172-215 186-228 (618)
43 3now_A UNC-45 protein, SD10334 54.6 1E+02 0.0036 31.3 11.7 163 71-240 528-694 (810)
44 1wa5_C Importin alpha RE-expor 51.5 2E+02 0.0067 28.7 14.9 102 91-197 49-155 (960)
45 2bpt_A Importin beta-1 subunit 51.4 1.7E+02 0.0057 27.9 16.2 147 80-240 225-398 (861)
46 1xm9_A Plakophilin 1; armadill 50.9 72 0.0025 29.1 9.2 116 72-193 323-448 (457)
47 1xm9_A Plakophilin 1; armadill 49.6 51 0.0018 30.1 8.0 111 125-241 5-117 (457)
48 1ddb_A Protein (BID); apoptosi 49.0 9.1 0.00031 32.7 2.5 80 39-124 81-181 (195)
49 2f31_A Diaphanous protein homo 47.7 1.2E+02 0.0042 25.3 11.2 25 116-140 86-110 (233)
50 2qk1_A Protein STU2; STU2P, XM 47.3 46 0.0016 28.1 6.8 139 89-242 26-177 (249)
51 3ul1_B Importin subunit alpha- 44.6 1.9E+02 0.0064 26.5 19.0 153 79-240 232-387 (510)
52 1xqr_A HSPBP1 protein; armadil 43.6 1.6E+02 0.0056 25.6 10.7 137 74-215 119-261 (296)
53 1vdy_A Hypothetical protein (R 41.3 65 0.0022 25.9 6.4 87 63-152 27-121 (140)
54 2bid_A Protein (BID); programm 41.2 30 0.001 29.5 4.5 81 38-124 82-183 (197)
55 3tpo_A Importin subunit alpha- 41.1 2.1E+02 0.0073 26.2 20.2 153 79-240 251-406 (529)
56 3m1i_C Exportin-1; heat repeat 39.3 1.8E+02 0.0062 29.3 10.8 103 136-244 816-929 (1049)
57 1ibr_B P95, importin beta-1 su 37.8 2E+02 0.0067 24.8 16.0 108 124-242 126-248 (462)
58 1b3u_A Protein (protein phosph 37.6 1.5E+02 0.0051 26.6 9.0 110 125-241 401-510 (588)
59 3dad_A FH1/FH2 domain-containi 36.9 2.5E+02 0.0085 25.7 17.3 171 17-212 118-310 (339)
60 2vgl_B AP-2 complex subunit be 36.6 2.7E+02 0.0092 26.1 11.0 135 80-241 50-190 (591)
61 2yru_A Steroid receptor RNA ac 35.9 1.5E+02 0.0052 22.9 7.6 43 39-81 36-78 (118)
62 2prs_A High-affinity zinc upta 34.1 91 0.0031 26.9 6.7 71 9-79 122-223 (284)
63 3gi1_A LBP, laminin-binding pr 30.9 92 0.0031 27.1 6.2 71 10-80 128-229 (286)
64 3cx3_A Lipoprotein; zinc-bindi 29.8 1E+02 0.0036 26.6 6.4 71 10-80 126-227 (284)
65 1w9c_A CRM1 protein, exportin 28.1 3.4E+02 0.012 24.5 13.6 92 125-216 114-221 (321)
66 2o1e_A YCDH; alpha-beta protei 26.3 1E+02 0.0036 27.1 5.8 72 9-80 138-240 (312)
67 1naf_A ADP-ribosylation factor 26.0 1.5E+02 0.0051 24.2 6.2 35 42-76 63-101 (158)
68 1oxz_A ADP-ribosylation factor 26.0 2.4E+02 0.0083 23.5 7.7 35 43-77 80-118 (186)
69 3now_A UNC-45 protein, SD10334 25.5 4.2E+02 0.014 26.8 10.7 151 80-240 581-737 (810)
70 3ci9_A Heat shock factor-bindi 25.1 83 0.0028 21.0 3.7 19 9-27 1-19 (48)
71 2db0_A 253AA long hypothetical 25.1 3.4E+02 0.012 23.6 12.1 149 70-240 23-210 (253)
72 1pq4_A Periplasmic binding pro 24.4 1.5E+02 0.0051 25.8 6.4 72 9-80 138-238 (291)
73 2jqq_A Conserved oligomeric go 24.3 2.2E+02 0.0076 24.3 7.1 63 13-77 75-138 (204)
74 1u6g_C TIP120 protein, CAND1; 23.9 5.8E+02 0.02 25.8 13.8 149 80-241 435-599 (1230)
75 2qk2_A LP04448P; mini spindles 23.7 2.8E+02 0.0097 22.2 12.6 138 84-242 20-164 (242)
76 2x19_B Importin-13; nuclear tr 22.3 2E+02 0.007 28.2 7.5 75 137-213 786-867 (963)
77 3hh8_A Metal ABC transporter s 22.0 1.7E+02 0.0057 25.6 6.2 72 9-80 129-233 (294)
78 3ujp_A Mn transporter subunit; 21.8 1.9E+02 0.0064 25.5 6.6 72 9-80 136-240 (307)
79 1toa_A Tromp-1, protein (perip 21.6 1.9E+02 0.0063 25.5 6.5 22 59-80 226-247 (313)
80 3r1f_A ESX-1 secretion-associa 21.4 87 0.003 24.3 3.8 97 8-108 25-129 (135)
81 3id7_A Dipeptidase; streptomyc 20.0 1E+02 0.0036 28.7 4.6 41 121-161 334-376 (400)
No 1
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=100.00 E-value=1.8e-92 Score=656.38 Aligned_cols=236 Identities=39% Similarity=0.692 Sum_probs=213.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc
Q 025870 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN 79 (247)
Q Consensus 1 M~~lfk~~~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~d 79 (247)
|+ ||++||||+|+||+++|+|.+|+.++ +++++++|+ |||+|+|++||.||+|++|+||+||+|+||++|+|++|
T Consensus 3 m~--F~~~~ktP~elVr~l~d~l~~l~~~~--~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d 78 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKNLKESMAVLEKQD--ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG 78 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHhccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 56 99999999999999999999999643 244554556 89999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHHHH
Q 025870 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVAR 159 (247)
Q Consensus 80 ll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl~~G~mLREcik~e~lak 159 (247)
++.+||.+||+||||+|||+++||++++||++|+++|+|+||++||||+++|++||+++|+|++||+|||||+|||++|+
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhh
Q 025870 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCA 239 (247)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~ 239 (247)
+||+|+.||+||+|+++|+||||||||+||||+||+||++||+||++|||+||++|| +||+|+||||||||||||||||
T Consensus 159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hh
Q 025870 240 SQ 241 (247)
Q Consensus 240 s~ 241 (247)
..
T Consensus 238 ld 239 (341)
T 1upk_A 238 LD 239 (341)
T ss_dssp HS
T ss_pred hC
Confidence 75
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.32 E-value=0.066 Score=42.99 Aligned_cols=162 Identities=12% Similarity=0.093 Sum_probs=117.4
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhcc--ChhhhHhHHHHH
Q 025870 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAML 148 (247)
Q Consensus 71 La~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~diAl~~G~mL 148 (247)
....+...+.+..|+..|..=+-+.|..++....++...... ..+.+.. ...+..|+.--+ ++++--.+-..|
T Consensus 46 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L 120 (210)
T 4db6_A 46 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWAL 120 (210)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHH
Confidence 345667778999999999887888899999998888753221 1222222 223333333322 456666666677
Q ss_pred HHHHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccc
Q 025870 149 RECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYIT 227 (247)
Q Consensus 149 REcik-~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVT 227 (247)
..... .+...+.++....+..+.+.++.++-++...|...+..+...++.....+...+ .+...- .|+.+++.-+
T Consensus 121 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---~i~~L~-~ll~~~~~~v 196 (210)
T 4db6_A 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLE-QLQSHENEKI 196 (210)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHHH-HGGGCSCHHH
T ss_pred HHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHH-HHHhCCCHHH
Confidence 77664 455556777888889999999999999999999999999887677666666655 566663 8999999999
Q ss_pred hhhhhhhhhHhhhh
Q 025870 228 RRQAVKVGKLCASQ 241 (247)
Q Consensus 228 kRQSLKLLgel~s~ 241 (247)
+++++..|+.|.++
T Consensus 197 ~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 197 QKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998763
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.22 E-value=0.16 Score=41.18 Aligned_cols=161 Identities=12% Similarity=0.176 Sum_probs=120.8
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc--cChhhhHhHHHHHHH
Q 025870 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (247)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~diAl~~G~mLRE 150 (247)
..+.+.+.+..|+..|..=+-+.|..++.+..++...... ..+.+.. ...+..|+... +++++...+-..|..
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE----AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445567899999999888888899999988888753221 1222222 34455554444 356777788888888
Q ss_pred HHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchh
Q 025870 151 CIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (247)
Q Consensus 151 cik-~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkR 229 (247)
... .+...+.+...+.+..+.+.++.++-++...|..++..+...++.....+.+.+ .+... ..++++++.-+++
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~L-~~ll~~~~~~v~~ 230 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAG---GVEVL-QKLLTSTDSEVQK 230 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTT---HHHHH-HHGGGCSCHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHH-HHHHCCCcHHHHH
Confidence 776 455667788888889999999999999999999999999887777666666655 56666 3899999999999
Q ss_pred hhhhhhhHhhhhh
Q 025870 230 QAVKVGKLCASQW 242 (247)
Q Consensus 230 QSLKLLgel~s~~ 242 (247)
+++..|+.|...+
T Consensus 231 ~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 231 EAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999987653
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.17 E-value=0.21 Score=41.06 Aligned_cols=159 Identities=12% Similarity=0.093 Sum_probs=116.3
Q ss_pred HHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhcc--ChhhhHhHHHHHHHH
Q 025870 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLREC 151 (247)
Q Consensus 74 ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~diAl~~G~mLREc 151 (247)
.+...+.+..|+..|..=+-+.|..++....++..... ...+.+.. ..++..|+..-. ++++-..+-..|...
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN----EQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc----hHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 44556788999999988788889999999988855221 11133332 344455544433 556666777777776
Q ss_pred HH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhh
Q 025870 152 IR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (247)
Q Consensus 152 ik-~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQ 230 (247)
.. .+...+.+...+.+..+.+.+..++-++...|..++..+...++.....++..+ .+...- .++.+++.-+|+.
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~i~~L~-~ll~~~~~~v~~~ 241 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLE-QLQSHENEKIQKE 241 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-TTTTCSSSHHHHT
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC---cHHHHH-HHhCCCCHHHHHH
Confidence 65 345566677778888999999999999999999999999887777776766654 556663 8999999999999
Q ss_pred hhhhhhHhhhh
Q 025870 231 AVKVGKLCASQ 241 (247)
Q Consensus 231 SLKLLgel~s~ 241 (247)
+...|+.|.++
T Consensus 242 A~~~L~~l~~~ 252 (252)
T 4db8_A 242 AQEALEKLQSH 252 (252)
T ss_dssp HHHHHHTTC--
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.73 E-value=0.13 Score=42.40 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=116.8
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc--cChhhhHhHHHHHHH
Q 025870 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (247)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~diAl~~G~mLRE 150 (247)
..+...+.+..|+..|..=+-+.|..++.+..++...... ..+.+.. ..++..|+.-- +++++--.+-..|..
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH----HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4566778999999999888888888888888888763322 1233322 23444443333 356777777777887
Q ss_pred HHHHHHHH-HHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchh
Q 025870 151 CIRHQSVA-RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (247)
Q Consensus 151 cik~e~la-k~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkR 229 (247)
....+... ..+...+.+..+.+.++.++-++...|..++..+....+.........+ .....- .++.+++.-+++
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~ 198 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQ 198 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHH-HGGGCSSHHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC---CHHHHH-HHHCCCCHHHHH
Confidence 77766666 7788888888899999999999999999999998876665555555443 445553 789999999999
Q ss_pred hhhhhhhHhhh
Q 025870 230 QAVKVGKLCAS 240 (247)
Q Consensus 230 QSLKLLgel~s 240 (247)
.++..|+.|.+
T Consensus 199 ~a~~~L~~l~~ 209 (252)
T 4db8_A 199 EALWALSNIAS 209 (252)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 6
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.66 E-value=1.1 Score=39.85 Aligned_cols=208 Identities=12% Similarity=0.079 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHhhccc-CchhhhH-HHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhchHHHHHh-hCCC
Q 025870 14 DIVRQTRDLIIYANRSA-DVRESKR-EDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLIT-CLPK 90 (247)
Q Consensus 14 elVr~l~e~l~~L~~~~-~~~~~k~-~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~-~L~~ 90 (247)
+-++.+++++..|.+.. ....... +.-.++-...|..+..++.+ . .-++.+.+.+-+..|+. .|..
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-------~----dna~~~~~~G~l~~Lv~~lL~s 93 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-------M----DNAADFCQLSGMHLLVGRYLEA 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-------H----HHHHHHHHTTHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-------h----hhHHHHHHcCCHHHHHHHHHcC
Confidence 44777888888888641 1111110 01113333445555554431 1 25666778888899999 8988
Q ss_pred CChhhhhhHHHHHHHHhhhccCCCcchhHHhhcC---HHHHHHHHHhccChhhhHhHHHHHHHHHHH-HHHHHHHhcchh
Q 025870 91 LNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENTDMALHYGAMLRECIRH-QSVARYVLESQH 166 (247)
Q Consensus 91 L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~L~~gY~~~diAl~~G~mLREcik~-e~lak~iL~~~~ 166 (247)
=+-+-|..++.+.+++...... .-+++... |-++..|-.. .++++.-.+-.-|--++++ ......+...+-
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~----~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAA----IQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 8888999999999998762211 12333332 3334333222 1344444444444444443 344445555566
Q ss_pred hHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhh
Q 025870 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 167 f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~ 241 (247)
+-.+...++.+++++-.+|...+..+...+......+.+.+ ++... -.||.+++--.+.+++..||.|++.
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g---~i~~L-v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG---MVQQL-VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT---HHHHH-HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC---CHHHH-HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 77777888899999999999999999987777777777766 55555 3799999999999999999999864
No 7
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.65 E-value=0.31 Score=39.44 Aligned_cols=161 Identities=12% Similarity=0.181 Sum_probs=120.9
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc--cChhhhHhHHHHH
Q 025870 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAML 148 (247)
Q Consensus 71 La~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~diAl~~G~mL 148 (247)
-...+.+.+.+..|+..|..=+-+.|..++.+..++.....+ ..+.+.. ..++..|+.-. +++++--.+-..|
T Consensus 36 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L 110 (252)
T 4hxt_A 36 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE----AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARAL 110 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH----HHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344556678899999999888888899999988888763221 2233332 23344443333 4677888888888
Q ss_pred HHHH-HHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccc
Q 025870 149 RECI-RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYIT 227 (247)
Q Consensus 149 REci-k~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVT 227 (247)
.... ..+.....+...+.+..+.+.++.++-++...|..++..+...++.....+...+ .+... ..++.+++.-+
T Consensus 111 ~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L-~~ll~~~~~~v 186 (252)
T 4hxt_A 111 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVL-VKLLTSTDSEV 186 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHH-HHHTTCSCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCc---CHHHH-HHHHCCCCHHH
Confidence 8887 5677788888888889999999999999999999999998876766655666544 55555 37999999999
Q ss_pred hhhhhhhhhHhhh
Q 025870 228 RRQAVKVGKLCAS 240 (247)
Q Consensus 228 kRQSLKLLgel~s 240 (247)
++.++..|+.|..
T Consensus 187 ~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 187 QKEAARALANIAS 199 (252)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999875
No 8
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=93.72 E-value=2.2 Score=37.61 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=111.2
Q ss_pred HHhhchHHHHHhhCCC-CChhhhhhHHHHHHHHhhhc-cCCCcchhHHhhcCHHHHHHHHHhc--cChhhhHhHHHHHHH
Q 025870 75 FFRENTLRLLITCLPK-LNLEARKDATQVVANLQRQQ-VHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (247)
Q Consensus 75 i~~~dll~~Li~~L~~-L~FE~RKdv~~If~~llr~~-~~~r~p~v~Yl~~~peil~~L~~gY--~~~diAl~~G~mLRE 150 (247)
+...+.+..|+..+.. -+-+.|..++..+.++.+.. ...+ ...+ ..++..|+.-- +++++-..+-..|+.
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~---~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE---FAKV---SPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC---GGGT---GGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHH---HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 4456788999999985 67889999999999998754 2211 1222 34444444433 345566666667777
Q ss_pred HHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchh
Q 025870 151 CIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (247)
Q Consensus 151 cik~-e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkR 229 (247)
+..+ ....+.+...+.+..+.+.+..++-++...|..++..+.+.........+..+ ..... ..++.+++--.|+
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L-~~ll~~~~~~vr~ 294 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS---ALQSL-LHLLSSPKESIKK 294 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHH-HHHTTCSSHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc---cHHHH-HHHHcCCCHHHHH
Confidence 6664 34455666677788888999999999999999999998887665544444443 55666 3789999999999
Q ss_pred hhhhhhhHhhh
Q 025870 230 QAVKVGKLCAS 240 (247)
Q Consensus 230 QSLKLLgel~s 240 (247)
.++..||.+..
T Consensus 295 ~a~~~L~~l~~ 305 (450)
T 2jdq_A 295 EACWTISNITA 305 (450)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHc
Confidence 99999999874
No 9
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=93.25 E-value=1.7 Score=38.37 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=104.9
Q ss_pred HHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc--cChhhhHhHHHHHHHH
Q 025870 74 EFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLREC 151 (247)
Q Consensus 74 ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~diAl~~G~mLREc 151 (247)
.+...+.+..|+..|..=+.+.|+.+....+++.+... ...+.+.. ..++..|+... +++++-..+-..|..+
T Consensus 271 ~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~----~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 345 (450)
T 2jdq_A 271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR----AQIQTVID-ANIFPALISILQTAEFRTRKEAAWAITNA 345 (450)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH----HHHHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH----HHHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45566788999999988788899999999998876221 12222222 13333333222 3566666666666666
Q ss_pred HHH--HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHH--HHHhcHHHH------HHHHHHhhcc
Q 025870 152 IRH--QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAE--FLSKNYDWF------FAEYNSKLLE 221 (247)
Q Consensus 152 ik~--e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvae--fL~~Nyd~F------f~~yn~~Ll~ 221 (247)
..+ +...+.++....+..+.+.++.++.+|-..|...+..++...+.-... --..+|-.. ..... .|+.
T Consensus 346 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~-~l~~ 424 (450)
T 2jdq_A 346 TSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIE-FLQS 424 (450)
T ss_dssp HHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHH-HHHC
T ss_pred HcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHH-HHHc
Confidence 653 345566667778888999999999999888888888887644321100 000112222 34563 7899
Q ss_pred CCCccchhhhhhhhhHhhh
Q 025870 222 SSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 222 S~NYVTkRQSLKLLgel~s 240 (247)
++||-.+.+++.+|+.+.+
T Consensus 425 ~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 425 HENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 9999999999999988764
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.00 E-value=2.8 Score=38.53 Aligned_cols=160 Identities=13% Similarity=0.164 Sum_probs=113.0
Q ss_pred HHHHHhhchHHHHHhhCCCC-ChhhhhhHHHHHHHHhhhccCCCcchhHHhhcC---HHHHHHHHHhccChhhhHhHHHH
Q 025870 72 TAEFFRENTLRLLITCLPKL-NLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENTDMALHYGAM 147 (247)
Q Consensus 72 a~ei~~~dll~~Li~~L~~L-~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~L~~gY~~~diAl~~G~m 147 (247)
.+.+.+.+.+..|+..|..= +.+.|+.++.+.+++.... ...+.++... |-++..|-.+ ++++-..+-..
T Consensus 321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~----~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~a 394 (528)
T 4b8j_A 321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN----KDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWA 394 (528)
T ss_dssp HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC----HHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC----HHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHH
Confidence 34566678888888888776 8889999999999997621 2234454442 5555555444 66777777777
Q ss_pred HHHHHHH--HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChH----------HHHHHHHhcHHHHHHHH
Q 025870 148 LRECIRH--QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKS----------TVAEFLSKNYDWFFAEY 215 (247)
Q Consensus 148 LREcik~--e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~----------lvaefL~~Nyd~Ff~~y 215 (247)
|..+..+ ....+++.....+..+.+.+..++-++---|...+..++..... -.++.+... ...+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~l 472 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEA--EGLEKI 472 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHT--THHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHC--CcHHHH
Confidence 7777776 56777788888889999999999989888888888888764433 122333222 134455
Q ss_pred HHhhccCCCccchhhhhhhhhHhhh
Q 025870 216 NSKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 216 n~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
. .|..++|.-.+..+.++|..+.+
T Consensus 473 ~-~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 473 E-NLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp H-HGGGCSSHHHHHHHHHHHHHHCC
T ss_pred H-HHHcCCCHHHHHHHHHHHHHHCC
Confidence 3 78999999999999998877654
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.82 E-value=0.9 Score=36.17 Aligned_cols=150 Identities=12% Similarity=0.096 Sum_probs=102.8
Q ss_pred HHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc--cChhhhHhHHHHHHHHHH-HHHHHH
Q 025870 83 LLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIR-HQSVAR 159 (247)
Q Consensus 83 ~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~diAl~~G~mLREcik-~e~lak 159 (247)
.|+.-|..=+-+.|..++....++.+.... ..+.+... .++..|+.-- +++++-..+-..|..+.. .+....
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~~-g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHHT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 444444455666777777777777643221 12222221 3333333322 356676777777777764 556667
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhh
Q 025870 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCA 239 (247)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~ 239 (247)
.+...+.+..+.+.++.++-++...|..++..+....+......+..+ .+...- .++.+++.-+++.++..|+.|.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---cHHHHH-HHHcCCCHHHHHHHHHHHHHHH
Confidence 777778888999999999999999999999998876666665665554 555563 7999999999999999999987
Q ss_pred hh
Q 025870 240 SQ 241 (247)
Q Consensus 240 s~ 241 (247)
+.
T Consensus 167 ~~ 168 (210)
T 4db6_A 167 SG 168 (210)
T ss_dssp TS
T ss_pred cC
Confidence 64
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=91.24 E-value=5.5 Score=36.70 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=111.7
Q ss_pred HHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHh--ccChhhhHhHHHHHHHHH
Q 025870 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--YENTDMALHYGAMLRECI 152 (247)
Q Consensus 75 i~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~g--Y~~~diAl~~G~mLREci 152 (247)
+...+.+..|+..|..-+-+.|..++....++.+..... +..... ..++..|+.- -+++++-..+-..|..+.
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ--PDWSVV---SQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC--CCHHHH---GGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC--CcHHHH---HhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 344578888999888878888999999999998754211 112222 2333333322 235666666666677666
Q ss_pred HH-HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhh
Q 025870 153 RH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQA 231 (247)
Q Consensus 153 k~-e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQS 231 (247)
.. +.....++..+.+..+.+++..++-++...|..++..+.+........++..+ +.... ..+|.+++.-+|..+
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L-~~lL~~~~~~vr~~A 361 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG---VLPAL-RLLLSSPKENIKKEA 361 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHH-HHHTTCSCHHHHHHH
T ss_pred CCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc---hHHHH-HHHHcCCCHHHHHHH
Confidence 53 44556667777788888899889999999999999998887776666666554 55566 379999999999999
Q ss_pred hhhhhHhhh
Q 025870 232 VKVGKLCAS 240 (247)
Q Consensus 232 LKLLgel~s 240 (247)
+..||.+..
T Consensus 362 ~~aL~~l~~ 370 (530)
T 1wa5_B 362 CWTISNITA 370 (530)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHc
Confidence 999999874
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=90.45 E-value=10 Score=34.83 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=108.3
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcC---HHHHHHHHHhccChhhhHhHHHHH
Q 025870 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENTDMALHYGAML 148 (247)
Q Consensus 72 a~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~L~~gY~~~diAl~~G~mL 148 (247)
.+.+...+.+..|+..|..=+.+.|+.++...+++.+... ..+.++... |.++..|-. .++++--.+-..|
T Consensus 334 ~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~----~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL 407 (530)
T 1wa5_B 334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT----EQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAI 407 (530)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH----HHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHH
Confidence 3455667889999999988889999999999999876221 123344321 444444422 3566666666666
Q ss_pred HHHHHH--H--HHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHH----------HHHHHHhcHHHHHHH
Q 025870 149 RECIRH--Q--SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKST----------VAEFLSKNYDWFFAE 214 (247)
Q Consensus 149 REcik~--e--~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~l----------vaefL~~Nyd~Ff~~ 214 (247)
..+... . ...+.+.....+..+.+.+..++-+|-.-|...+..++.....- .+..+... .....
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~ 485 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKA--GGMEK 485 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHT--THHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHc--CcHHH
Confidence 666554 1 45566777778888899998899998888888888877643321 22223221 23556
Q ss_pred HHHhhccCCCccchhhhhhhhhHhhh
Q 025870 215 YNSKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 215 yn~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
.. .|+.++|+-.+.++..+|..+.+
T Consensus 486 L~-~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 486 IF-NCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HH-GGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HH-HHHcCCCHHHHHHHHHHHHHHCC
Confidence 64 79999999999999999987664
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=85.79 E-value=3 Score=42.76 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=93.2
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccCh--hhhHhHHHHHHHHHHHHHH
Q 025870 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT--DMALHYGAMLRECIRHQSV 157 (247)
Q Consensus 80 ll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~--diAl~~G~mLREcik~e~l 157 (247)
++..|+..|..=+.+.|+-++.....+...- +. . ..+.|+..|+.+..++ .+-..++.-|..++.+-.-
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-----~~-~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-----KE-Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-----CH-H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CH-H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 4455666666667888998888888777521 11 2 2377888888886543 3433444555544432110
Q ss_pred H------HHHhcchhhHhhhhhcc-CCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhh
Q 025870 158 A------RYVLESQHMKKFFDYIQ-LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (247)
Q Consensus 158 a------k~iL~~~~f~~fF~yv~-~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQ 230 (247)
. ..-.....+-.+++.++ .++.++..-|+.++.+++......+. ...+.+...+- .++.+++-..|++
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~----~~~~~ll~~l~-~~L~~~~~~vR~~ 194 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV----NFHPSILTCLL-PQLTSPRLAVRKR 194 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT----TTHHHHHHHHG-GGGGCSSHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH----HHHHHHHHHHH-HHHcCCcHHHHHH
Confidence 0 00011223445666777 68899999999999999865443322 23456666664 7788888888899
Q ss_pred hhhhhhHhhhh
Q 025870 231 AVKVGKLCASQ 241 (247)
Q Consensus 231 SLKLLgel~s~ 241 (247)
+++.||.++..
T Consensus 195 a~~al~~l~~~ 205 (1230)
T 1u6g_C 195 TIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHh
Confidence 99988887653
No 15
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=85.04 E-value=20 Score=32.15 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=101.1
Q ss_pred hchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHh---ccChhhhHhHHHHHHHHHHH
Q 025870 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG---YENTDMALHYGAMLRECIRH 154 (247)
Q Consensus 78 ~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~g---Y~~~diAl~~G~mLREcik~ 154 (247)
.+.+..|+..|..=+-+.|..++....++-+.. +..+-+...+.++..|+.. -+++++-..+-..|+.+.+.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-----~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-----HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-----ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 445666666665556677777777777776532 1223344455555555433 24778888888899998888
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhh
Q 025870 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKV 234 (247)
Q Consensus 155 e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKL 234 (247)
+.....+...+..-.+.+.++.++-++-..|..++..+...+......+...+ .....- .++.+++--.+..+...
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g---~i~~L~-~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTDC 166 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT---HHHHHH-HGGGCCCHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 77777788888888999999999989999999999988775443333333333 344442 67777776556665556
Q ss_pred hhHhh
Q 025870 235 GKLCA 239 (247)
Q Consensus 235 Lgel~ 239 (247)
|+.+.
T Consensus 167 L~~la 171 (529)
T 1jdh_A 167 LQILA 171 (529)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=84.61 E-value=25 Score=34.81 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=108.3
Q ss_pred hhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc---cChhhhHhHHHHHHHHHH
Q 025870 77 RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECIR 153 (247)
Q Consensus 77 ~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY---~~~diAl~~G~mLREcik 153 (247)
..+.+..|+..|..=+-+.|..++....++-... +...-+...|+++..|+..- +++++-..+-..|+.+.+
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-----~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~ 222 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH 222 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-----HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-----hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 3566777777776667778888888877776532 12234445677888776544 478888899999999888
Q ss_pred HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhh
Q 025870 154 HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVK 233 (247)
Q Consensus 154 ~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLK 233 (247)
...-...+.....+..+.+.++.++-++--.|..++..+-..+......+...+ .+...- .||.++|--.++.++.
T Consensus 223 ~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g---~v~~Lv-~lL~~~~~~v~~~a~~ 298 (780)
T 2z6g_A 223 HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTD 298 (780)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHHH
T ss_pred CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHH
Confidence 777666777778888999999999989999999999998876544433333333 344553 6888877656666666
Q ss_pred hhhHhh
Q 025870 234 VGKLCA 239 (247)
Q Consensus 234 LLgel~ 239 (247)
.|+-|.
T Consensus 299 aL~~La 304 (780)
T 2z6g_A 299 CLQILA 304 (780)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665443
No 17
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=82.87 E-value=27 Score=33.18 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=104.2
Q ss_pred HhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc---cChhhhHhHHHHHHHHH
Q 025870 76 FRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECI 152 (247)
Q Consensus 76 ~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY---~~~diAl~~G~mLREci 152 (247)
+..+.+..|+..|..=+-+.|..++....++-+.. +...-+..++.++..|+..- +++++-..+-..|+.+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-----~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-----THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-----hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 34556666666666556677888888777776532 12333445566666665543 36788888888899888
Q ss_pred HHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhh
Q 025870 153 RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (247)
Q Consensus 153 k~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSL 232 (247)
++......+.....+-.+.+.++.++-++-..|..++..+...+......+...+ .....- .+|.++|--.+..++
T Consensus 86 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 86 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITT 161 (644)
T ss_dssp TSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHH
T ss_pred cChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCC---ChHHHH-HHHCcCCHHHHHHHH
Confidence 8877777778888888999999999989999999999998876544433443333 344442 678777654444445
Q ss_pred hhhhHhh
Q 025870 233 KVGKLCA 239 (247)
Q Consensus 233 KLLgel~ 239 (247)
..|+.|.
T Consensus 162 ~~L~~La 168 (644)
T 2z6h_A 162 DCLQILA 168 (644)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5565554
No 18
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=82.76 E-value=33 Score=34.31 Aligned_cols=148 Identities=16% Similarity=0.267 Sum_probs=94.5
Q ss_pred HHHHHHhhhccCCCCC-------CChHHHHHHHHHHHhh-chHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchh
Q 025870 47 NIRELKSILYGNSESE-------PVSEACAQLTAEFFRE-NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIAS 118 (247)
Q Consensus 47 ~L~~mK~iL~G~~e~e-------p~~e~~~qLa~ei~~~-dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v 118 (247)
.|.-+-.++.++++.+ ...|...+++.++.+. +-+..|+..|..=+|..|-.+.++...+++.+... +=
T Consensus 82 ~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~---~Q 158 (651)
T 3grl_A 82 ALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ---VQ 158 (651)
T ss_dssp HHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH---HH
T ss_pred HHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH---HH
Confidence 3444445666655432 1123345677666544 68999999999999999999999999999855321 34
Q ss_pred HHhhcCHHHHHHHHHhccCh-hhhHhHHH-HHHHHHH-HHHHHHHHhcchhhHhhhhhccCCCc----hhhhhhHHHHHH
Q 025870 119 DYLEANIDLLDILIAGYENT-DMALHYGA-MLRECIR-HQSVARYVLESQHMKKFFDYIQLPNF----DIAADAAATFKE 191 (247)
Q Consensus 119 ~Yl~~~peil~~L~~gY~~~-diAl~~G~-mLREcik-~e~lak~iL~~~~f~~fF~yv~~~~F----eiaSDAf~tfke 191 (247)
+++.+.|.-+..|+.--+++ |+-=+-+. +|.+..+ +..+-+++=.-.-|.++|+-++...- .|.+|++.....
T Consensus 159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 78888999999998877654 22222111 1222222 33344444444568888887766655 678888888888
Q ss_pred HHhhCh
Q 025870 192 LLTRHK 197 (247)
Q Consensus 192 lLtrHk 197 (247)
||....
T Consensus 239 LLr~N~ 244 (651)
T 3grl_A 239 LLKNNN 244 (651)
T ss_dssp HHTTCH
T ss_pred HHhcCH
Confidence 887554
No 19
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=82.38 E-value=11 Score=34.06 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=105.9
Q ss_pred HHHhhchHHHHHhhC-CCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHH---HH-hccCh--hhhHhHHH
Q 025870 74 EFFRENTLRLLITCL-PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDIL---IA-GYENT--DMALHYGA 146 (247)
Q Consensus 74 ei~~~dll~~Li~~L-~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L---~~-gY~~~--diAl~~G~ 146 (247)
.+...+.+..|+..| ..=+-+.++.++....++-....+++. -+......+..| +. +.+.. ++.-.+..
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~----~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~ 240 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 240 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH----HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH----HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHH
Confidence 445567777777764 334566777665555444331111111 122122233333 22 22111 46666777
Q ss_pred HHHHHHH----HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccC
Q 025870 147 MLRECIR----HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (247)
Q Consensus 147 mLREcik----~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S 222 (247)
.||.... .+.-...+.+...+-.+.+.+..+++++-..|..++..+-.....-.....+.+ .+... ..||++
T Consensus 241 aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---~i~~L-v~LL~s 316 (354)
T 3nmw_A 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG---AVSML-KNLIHS 316 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT---HHHHH-HTTTTC
T ss_pred HHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC---CHHHH-HHHHhC
Confidence 7887665 566667788888899999999999999999999999998766676666666666 44445 389999
Q ss_pred CCccchhhhhhhhhHhhhh
Q 025870 223 SNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 223 ~NYVTkRQSLKLLgel~s~ 241 (247)
++--+|+.+..-|..|++.
T Consensus 317 ~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 317 KHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp SSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 9999999999999998863
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=82.02 E-value=16 Score=34.42 Aligned_cols=161 Identities=13% Similarity=0.166 Sum_probs=107.0
Q ss_pred HHHHhhchHHHHHhh-CCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHH---HH-hccCh--hhhHhHH
Q 025870 73 AEFFRENTLRLLITC-LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDIL---IA-GYENT--DMALHYG 145 (247)
Q Consensus 73 ~ei~~~dll~~Li~~-L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L---~~-gY~~~--diAl~~G 145 (247)
..+...+.+..|+.. +..=+-+.++.++....|+-....+++. -+......+..| +. +-+.+ ++.-.+.
T Consensus 280 ~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~----~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~ 355 (458)
T 3nmz_A 280 KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355 (458)
T ss_dssp HHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH----HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHH
Confidence 345556778888886 4444666677665544444331111111 122122233333 22 22222 4666677
Q ss_pred HHHHHHHH----HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhcc
Q 025870 146 AMLRECIR----HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLE 221 (247)
Q Consensus 146 ~mLREcik----~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~ 221 (247)
..||.+.. .+.-...|.+.+.+-.+.+.+..+++++-..|..++..+-...+.......+.+ .+.-. ..||.
T Consensus 356 ~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---~I~~L-v~LL~ 431 (458)
T 3nmz_A 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG---AVSML-KNLIH 431 (458)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT---HHHHH-HTTTT
T ss_pred HHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHH-HHHHh
Confidence 78888764 566667788888899999999999999999999999999777777776666665 44444 37999
Q ss_pred CCCccchhhhhhhhhHhhhh
Q 025870 222 SSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 222 S~NYVTkRQSLKLLgel~s~ 241 (247)
+++--.|+.+..-|..|++.
T Consensus 432 s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 432 SKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp CSSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999998864
No 21
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=81.55 E-value=13 Score=34.01 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=43.0
Q ss_pred hchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhc-CHHHHHHHHHh
Q 025870 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-NIDLLDILIAG 134 (247)
Q Consensus 78 ~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~peil~~L~~g 134 (247)
.++|..|+ +...+|.+-|.-++.|.+.+||. .+|+++++.+ +|..+..++..
T Consensus 70 f~lL~nL~-~~~~~~~~~rE~aarII~ssLRN----NP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 70 FALLANLS-LNENLPLTLRELSTRVITSCLRN----NPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHH-hhccCChhHHHHHHHHHHHHHcc----CHHHHHHHHHhChhHHHHHHHH
Confidence 36777887 55559999999999999999994 4578999987 79999999854
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=80.42 E-value=34 Score=31.14 Aligned_cols=159 Identities=11% Similarity=0.079 Sum_probs=109.1
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc---cChhhhHhHHHHHH
Q 025870 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLR 149 (247)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY---~~~diAl~~G~mLR 149 (247)
+.+...+.+..|+..|..=+-+.|..+..+.+++..... ...+.+.. ..++..|+..- .++++--.+-..|.
T Consensus 280 ~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~----~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 280 QAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD----AQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH----HHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 456677889999999988888888888888888876221 22333333 33333333222 25566666666666
Q ss_pred HHHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhh-ChHHHHHHHHhcHHHHHHHHHHhhccCCCccc
Q 025870 150 ECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLESSNYIT 227 (247)
Q Consensus 150 Ecik-~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtr-Hk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVT 227 (247)
.+.. .+.....++..+.+..+.+.++.+++++-..|...+..+... .+.....+...+ .+... ..||.+++--+
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~---~i~~L-~~lL~~~d~~v 430 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEG---CIKPL-CDLLICPDIRI 430 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---CHHHH-HHGGGCSCHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCC---CHHHH-HHHHcCCCHHH
Confidence 6554 444556667777788888888889999999999999888765 454444444443 44445 37888988888
Q ss_pred hhhhhhhhhHhhh
Q 025870 228 RRQAVKVGKLCAS 240 (247)
Q Consensus 228 kRQSLKLLgel~s 240 (247)
+..++..|+.++.
T Consensus 431 ~~~al~~L~~l~~ 443 (528)
T 4b8j_A 431 VTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=79.46 E-value=49 Score=32.32 Aligned_cols=146 Identities=15% Similarity=0.155 Sum_probs=90.0
Q ss_pred HHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhHhHHHH--HHHHHH-HH-HH
Q 025870 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAM--LRECIR-HQ-SV 157 (247)
Q Consensus 82 ~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl~~G~m--LREcik-~e-~l 157 (247)
..++..|..=+-..|+.++.+.+.+.++. +-..-|+++..|+..-.+++....-|.+ |...++ .. .+
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---------~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKG---------ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHT---------TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhc---------CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 44555555555566777777777777753 1234588999998888776544333332 111111 00 01
Q ss_pred HHHHh---cchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhh
Q 025870 158 ARYVL---ESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKV 234 (247)
Q Consensus 158 ak~iL---~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKL 234 (247)
.+--+ -...+-.|++.++.++-+|-.-|...+..++..+.. -+..+.+.+....- .++.+++--.|+++++.
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~----~~~~~~~~~l~~l~-~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ----ALMLHIDSFIENLF-ALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH----HHHTSHHHHHHHHH-HHHTCCCHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHH
Confidence 10000 012344566677788888888888888766644332 23456667777774 78889999999999999
Q ss_pred hhHhhhh
Q 025870 235 GKLCASQ 241 (247)
Q Consensus 235 Lgel~s~ 241 (247)
|++++..
T Consensus 239 L~~l~~~ 245 (852)
T 4fdd_A 239 LVMLLEV 245 (852)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998763
No 24
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=79.34 E-value=14 Score=30.30 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=97.2
Q ss_pred CCChhhhhhHHHHHHHHhhhccCCCcchhHHhhc-CHHHHHHHHHhccCh--hhhHhHHHHHHHHHHHHHHHHHHhcchh
Q 025870 90 KLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-NIDLLDILIAGYENT--DMALHYGAMLRECIRHQSVARYVLESQH 166 (247)
Q Consensus 90 ~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~peil~~L~~gY~~~--diAl~~G~mLREcik~e~lak~iL~~~~ 166 (247)
.-+...|+.+...+..+.+.- +. .+.. .+.++..|+....++ .+--.+..-|..|+..-.+. ..
T Consensus 68 d~~~~V~~~a~~~l~~la~~l-~~------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~------~l 134 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGL-AK------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE------AQ 134 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH-GG------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH------HH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-hh------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH------HH
Confidence 456667888888888887532 21 1222 477888888888754 56567777777777643321 23
Q ss_pred hHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhhh
Q 025870 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQW 242 (247)
Q Consensus 167 f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~~ 242 (247)
+..+..+++..+-.+-..+...+..++.+|..- .+....+..+....- .++..+++-.|..+...||.+..++
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~--~~~~~~l~~l~p~l~-~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPT--ALNKKLLKLLTTSLV-KTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH-HHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHc
Confidence 445667788889999999999999999988421 122233456777774 8999999999999999999998764
No 25
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=79.09 E-value=40 Score=31.18 Aligned_cols=158 Identities=9% Similarity=0.078 Sum_probs=100.3
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcC--HHHHHHHHHhccChhhhHhHHHHHHH
Q 025870 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAMLRE 150 (247)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~--peil~~L~~gY~~~diAl~~G~mLRE 150 (247)
+.+...+.+..|+..|..=+-+.+..+.....++..... .....+... -..|..|+.. .++++--.+...|..
T Consensus 287 ~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~----~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 287 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD----EQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch----HHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 456677888899998888888888888888888765221 111222221 1222333332 244554445555555
Q ss_pred HHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhCh-HHHHHHHHhcHHHHHHHHHHhhccCCCccch
Q 025870 151 CIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK-STVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (247)
Q Consensus 151 cik-~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk-~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTk 228 (247)
+.. .+.....+.....+..+...+..+++++-..|..++.-+..... ..+....+.+ ..... ..||.+++-=+.
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g---~i~~L-~~LL~~~d~~i~ 437 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG---IIEPL-MNLLSAKDTKII 437 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---CHHHH-HHGGGCSCHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc---CHHHH-HHHhcCCCHHHH
Confidence 444 45556667777788888999999999999999988887765432 2222222333 34444 378888887778
Q ss_pred hhhhhhhhHhh
Q 025870 229 RQAVKVGKLCA 239 (247)
Q Consensus 229 RQSLKLLgel~ 239 (247)
+.+|.-|.-++
T Consensus 438 ~~~L~aL~nil 448 (529)
T 3tpo_A 438 QVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777765
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=78.32 E-value=47 Score=31.48 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=105.9
Q ss_pred HHhhchHHHHHhhCCCCC-hhhhhhHHHHHHHHhhhccCCCcchhHHhhcC---HHHHHHHHHhc---------------
Q 025870 75 FFRENTLRLLITCLPKLN-LEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGY--------------- 135 (247)
Q Consensus 75 i~~~dll~~Li~~L~~L~-FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~L~~gY--------------- 135 (247)
+...+.+..|+..|..=. .+.|+.++....|+..... ....+... |.++..|-.+.
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-----~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~ 422 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-----GHHHHHHTTHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-----HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccch
Confidence 555678888888887653 6789999998888876221 11222221 33334333321
Q ss_pred -----cChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHH
Q 025870 136 -----ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDW 210 (247)
Q Consensus 136 -----~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~ 210 (247)
...++...+-..|+.+.+++.....+.....+..+.+++..++-+|..-|...+..+. .++.....+...+
T Consensus 423 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g--- 498 (644)
T 2z6h_A 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG--- 498 (644)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT---
T ss_pred hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcC---
Confidence 2345555667777888888877667767778888999999999999888888888765 4555544333333
Q ss_pred HHHHHHHhhccCCCccchhhhhhhhhHhhh
Q 025870 211 FFAEYNSKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 211 Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
-.... ..|+.|+|--.|..+...|+.|..
T Consensus 499 ~l~~L-~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 499 ATAPL-TELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp CHHHH-HHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ChhHH-HHHHcCCCHHHHHHHHHHHHHHhc
Confidence 23455 379999999999999998888764
No 27
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=77.14 E-value=59 Score=32.04 Aligned_cols=62 Identities=11% Similarity=-0.064 Sum_probs=49.1
Q ss_pred chhhhhhHHHHHHHHhhChHHHHHHHHhc-HHHHHHHHHHhhccCCCccchhhhhhhhhHhhhhhh
Q 025870 179 FDIAADAAATFKELLTRHKSTVAEFLSKN-YDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQWV 243 (247)
Q Consensus 179 FeiaSDAf~tfkelLtrHk~lvaefL~~N-yd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~~~ 243 (247)
=|+.-+.|.-+.+++..++..+-. ... ++.++...- ..+.+++.-+.|.+++.|++++++|-
T Consensus 787 pd~~~~~f~ll~~~~~~~~~~~~~--~~~~~~~i~~~~~-~~l~~~~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 787 PDIVDSFMQLLAQALKRKPDLFLC--ERLDVKAVFQCAV-LALKFPEAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGC--TTSCHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHGGGTT
T ss_pred chHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 478888999999999888866521 222 677877773 67889999999999999999999873
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=76.28 E-value=19 Score=32.28 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=96.8
Q ss_pred hhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhc--CHHHHHHHHHhccChhhhHhHHHHHHHHHHH
Q 025870 77 RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA--NIDLLDILIAGYENTDMALHYGAMLRECIRH 154 (247)
Q Consensus 77 ~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~--~peil~~L~~gY~~~diAl~~G~mLREcik~ 154 (247)
..+.+..|+..|..=+.+.|..++....++-..... ...-+.. -.+.+..+++..+..+....++..|+....+
T Consensus 141 ~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~----~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 141 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE----SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 467788888888775555566555555555431111 1111111 1334444556666667777788888887777
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhh
Q 025870 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKV 234 (247)
Q Consensus 155 e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKL 234 (247)
+.....+...+.+..+.+.++.++=++...|..++..+-...+.. ..........- +|+.+++--++..+...
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~i~~L~-~ll~~~~~~v~~~a~~~ 289 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------EGMEGLLGTLV-QLLGSDDINVVTCAAGI 289 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC------SCCHHHHHHHH-HHTTCSCHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh------HHHHhHHHHHH-HHHcCCCHHHHHHHHHH
Confidence 777777777777888888888887777777777777654322111 11234566663 77888888888888888
Q ss_pred hhHhhh
Q 025870 235 GKLCAS 240 (247)
Q Consensus 235 Lgel~s 240 (247)
|+.|..
T Consensus 290 L~~L~~ 295 (529)
T 1jdh_A 290 LSNLTC 295 (529)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 887754
No 29
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=73.57 E-value=18 Score=34.66 Aligned_cols=143 Identities=7% Similarity=-0.024 Sum_probs=80.0
Q ss_pred CChhhhhhHHHHHHHHhhhccCCCc--chhHHhhc----CHHHHHHHHHhc--cChhhhHhHHHHHHHHHHHHHHHHHHh
Q 025870 91 LNLEARKDATQVVANLQRQQVHSKL--IASDYLEA----NIDLLDILIAGY--ENTDMALHYGAMLRECIRHQSVARYVL 162 (247)
Q Consensus 91 L~FE~RKdv~~If~~llr~~~~~r~--p~v~Yl~~----~peil~~L~~gY--~~~diAl~~G~mLREcik~e~lak~iL 162 (247)
-+.+.|.-++.++.+.++..-..+. +.-.|-.- +..|-..|+.+- +++.+ ..++..+.+..+++-... -
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~--~ 125 (876)
T 1qgr_A 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVN--Q 125 (876)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGT--C
T ss_pred CCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccc--c
Confidence 3566677777777776542100000 00111111 222333344433 34455 666667776666642100 0
Q ss_pred cchhhHhhhhhccCC--CchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCC--CccchhhhhhhhhHh
Q 025870 163 ESQHMKKFFDYIQLP--NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESS--NYITRRQAVKVGKLC 238 (247)
Q Consensus 163 ~~~~f~~fF~yv~~~--~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~--NYVTkRQSLKLLgel 238 (247)
..+.+..+++.++.+ +-++---|+.++..+...-. .+.+......++.... +.+.++ |.-.|..+++-|+.+
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~~~~~~~~~ll~~l~-~~l~~~~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID---PEQLQDKSNEILTAII-QGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC---HHHHGGGHHHHHHHHH-HHHSTTCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC---HhhHHhHHHHHHHHHH-HhhcCCCCCHHHHHHHHHHHHHH
Confidence 123344555677777 66666778888877775421 2335566777777775 677776 788899999999987
Q ss_pred hh
Q 025870 239 AS 240 (247)
Q Consensus 239 ~s 240 (247)
++
T Consensus 202 ~~ 203 (876)
T 1qgr_A 202 LE 203 (876)
T ss_dssp GG
T ss_pred HH
Confidence 75
No 30
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=73.36 E-value=20 Score=35.03 Aligned_cols=150 Identities=8% Similarity=0.118 Sum_probs=90.5
Q ss_pred HHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhcc--ChhhhHhHHHHHHHHHHHHHHHH
Q 025870 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSVAR 159 (247)
Q Consensus 82 ~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~diAl~~G~mLREcik~e~lak 159 (247)
..++.++..-+-+.|.-++..+.+.+++.-.. .|. ..+..|-..|+.+-. ++.+-..++..+.+..+++....
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~-~~~----~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~ 125 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN-FPN----GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQN 125 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG-CCH----HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHccCC-CCH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc
Confidence 34445555667788888888888777643211 110 113344455554443 45666777777777776652110
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHH-HHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhhHh
Q 025870 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA-EFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLC 238 (247)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lva-efL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel 238 (247)
..+.+-.+++.++.++..+--=|+.++..+....+.... +.+....+.++..+- +++.+++--.|..+++-|+.+
T Consensus 126 ---wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~-~~l~~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 126 ---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQF 201 (852)
T ss_dssp ---CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT-TTTTCSSHHHHHHHHHHHHTT
T ss_pred ---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHH
Confidence 122344566677777777666677777776654433221 122233566777775 788999999999999999876
Q ss_pred hh
Q 025870 239 AS 240 (247)
Q Consensus 239 ~s 240 (247)
++
T Consensus 202 ~~ 203 (852)
T 4fdd_A 202 II 203 (852)
T ss_dssp TT
T ss_pred Hh
Confidence 63
No 31
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=73.03 E-value=56 Score=30.14 Aligned_cols=158 Identities=9% Similarity=0.087 Sum_probs=95.8
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcC--HHHHHHHHHhccChhhhHhHHHHHHH
Q 025870 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAMLRE 150 (247)
Q Consensus 73 ~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~--peil~~L~~gY~~~diAl~~G~mLRE 150 (247)
+.+...+.+..|+..|..=+-+.+..+.....++...... ....+... -..|..|+. -.++++--.+-..|..
T Consensus 268 ~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~----~~~~i~~~g~l~~L~~LL~-~~~~~v~~~A~~aL~n 342 (510)
T 3ul1_B 268 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE----QTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 342 (510)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTGGGGCC-CTT-CSSHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH----HHHHHhhccchHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 4456778888899888888888888888878777652211 11111110 011111121 1233444444444444
Q ss_pred HHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhCh-HHHHHHHHhcHHHHHHHHHHhhccCCCccch
Q 025870 151 CIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK-STVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (247)
Q Consensus 151 cik-~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk-~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTk 228 (247)
+.. .+.....+.....+..+.+.+..+++++-..|..++.-+..... ..+....+.+ ..... ..||.+++-=+.
T Consensus 343 l~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g---~i~~L-~~LL~~~d~~i~ 418 (510)
T 3ul1_B 343 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG---IIEPL-MNLLSAKDTKII 418 (510)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT---CHHHH-HHGGGCSCHHHH
T ss_pred HHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC---CHHHH-HHHhcCCCHHHH
Confidence 433 45556667777788888999999999999999988888765432 2222233333 34444 368888887777
Q ss_pred hhhhhhhhHhh
Q 025870 229 RQAVKVGKLCA 239 (247)
Q Consensus 229 RQSLKLLgel~ 239 (247)
+.+|.-|.-++
T Consensus 419 ~~~L~aL~nil 429 (510)
T 3ul1_B 419 QVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888777665
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=72.91 E-value=65 Score=31.78 Aligned_cols=157 Identities=16% Similarity=0.085 Sum_probs=102.6
Q ss_pred HHHhhchHHHHHhhCCCCCh-hhhhhHHHHHHHHhhhccCCCcchhHHhhc-C--HHHHHHHHHhc--------------
Q 025870 74 EFFRENTLRLLITCLPKLNL-EARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGY-------------- 135 (247)
Q Consensus 74 ei~~~dll~~Li~~L~~L~F-E~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~L~~gY-------------- 135 (247)
.+...+.+..|+..|..=+- +.|+.++....++.+... ....+.. . |.++..|-.+.
T Consensus 483 ~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq 557 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557 (780)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-----HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-----HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccc
Confidence 45556778888888876553 788999999888875221 1122222 1 33444443321
Q ss_pred ------cChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHH
Q 025870 136 ------ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYD 209 (247)
Q Consensus 136 ------~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd 209 (247)
...++-..+...|+.+.+.+.....+.....+..+.+.+..++-+|..-|...+..+. .++.....+....
T Consensus 558 ~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g-- 634 (780)
T 2z6g_A 558 QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG-- 634 (780)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT--
T ss_pred hhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCC--
Confidence 1234555566667777777766666767778888999999999999888888888775 4555444443333
Q ss_pred HHHHHHHHhhccCCCccchhhhhhhhhHhhh
Q 025870 210 WFFAEYNSKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 210 ~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
..... ..|+.++|--.|+.++..|+.+..
T Consensus 635 -~i~~L-~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 635 -ATAPL-TELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp -CHHHH-HHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred -CHHHH-HHHHcCCCHHHHHHHHHHHHHHHc
Confidence 23344 378999998888888887777654
No 33
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=72.38 E-value=54 Score=31.62 Aligned_cols=85 Identities=13% Similarity=0.127 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhcccCchhhhHHHHHHHHHHHHHHHHhhhccCCCCCC--ChHHHHHHHHHHHh-h---chHHHHHhhCCC
Q 025870 17 RQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEP--VSEACAQLTAEFFR-E---NTLRLLITCLPK 90 (247)
Q Consensus 17 r~l~e~l~~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep--~~e~~~qLa~ei~~-~---dll~~Li~~L~~ 90 (247)
|.+++.+..+....+ + ++...-+.+-+..+|.-+-+++..++ ..+.+..+..-+.. . .++...+..++.
T Consensus 11 ~~l~~~I~~ir~~~~----~-~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s 85 (621)
T 2vgl_A 11 RGLAVFISDIRNCKS----K-EAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSS 85 (621)
T ss_dssp HHHHHHHHHHHHCSS----H-HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGC
T ss_pred hhHHHHHHHHHcCCC----H-HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcC
Confidence 555666555544322 1 11113588889999999986432222 12334444333222 1 256888888888
Q ss_pred CChhhhhhHHHHHHHH
Q 025870 91 LNLEARKDATQVVANL 106 (247)
Q Consensus 91 L~FE~RKdv~~If~~l 106 (247)
=+|+-||-+..-...+
T Consensus 86 ~~~~~Krl~YL~l~~~ 101 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVL 101 (621)
T ss_dssp SCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8898888665544433
No 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=71.07 E-value=22 Score=31.06 Aligned_cols=144 Identities=7% Similarity=-0.030 Sum_probs=80.5
Q ss_pred CCChhhhhhHHHHHHHHhhhccCCCcchh--HHh----hcCHHHHHHHHHhcc--ChhhhHhHHHHHHHHHHHHHHHHHH
Q 025870 90 KLNLEARKDATQVVANLQRQQVHSKLIAS--DYL----EANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSVARYV 161 (247)
Q Consensus 90 ~L~FE~RKdv~~If~~llr~~~~~r~p~v--~Yl----~~~peil~~L~~gY~--~~diAl~~G~mLREcik~e~lak~i 161 (247)
..+.+.|.-++.++.+++++.-..+..-+ .|- ..++.|-..|+.+-. ++.+ -.++..+-+..+++.-..
T Consensus 48 ~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~-- 124 (462)
T 1ibr_B 48 GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN-- 124 (462)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--
T ss_pred CCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--
Confidence 34667777777777777654311000000 011 012334444444433 3445 556666665555542100
Q ss_pred hcchhhHhhhhhccCC--CchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCC--CccchhhhhhhhhH
Q 025870 162 LESQHMKKFFDYIQLP--NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESS--NYITRRQAVKVGKL 237 (247)
Q Consensus 162 L~~~~f~~fF~yv~~~--~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~--NYVTkRQSLKLLge 237 (247)
-..+.+-.+++.++.+ +.++---|+.++..+..... .+.+..+.+.++.... +++.++ +--.|+.+++-|+.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~---~~~~~~~~~~ll~~l~-~~l~~~~~~~~vr~~a~~~l~~ 200 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID---PEQLQDKSNEILTAII-QGMRKEEPSNNVKLAATNALLN 200 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC---GGGTGGGHHHHHHHHH-HHHSTTCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC---chhhHhHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHH
Confidence 1122344456667676 67777778888888776431 1224555667887775 788887 77889999999987
Q ss_pred hhh
Q 025870 238 CAS 240 (247)
Q Consensus 238 l~s 240 (247)
++.
T Consensus 201 ~~~ 203 (462)
T 1ibr_B 201 SLE 203 (462)
T ss_dssp HTT
T ss_pred HHH
Confidence 653
No 35
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=71.06 E-value=57 Score=30.06 Aligned_cols=143 Identities=13% Similarity=0.213 Sum_probs=104.9
Q ss_pred HHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhH-------
Q 025870 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL------- 142 (247)
Q Consensus 70 qLa~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl------- 142 (247)
.+|.-+..++.+..+...+..=.||---|+-..|..++-+.. ..+.+||.+|-|-.+....+-=..+-..
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk---~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK---LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH---HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 444555555666677888888899999999999999998643 3577999999887666654432222222
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHh--hChHHHHHHHHhcHHHHHHHH
Q 025870 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLT--RHKSTVAEFLSKNYDWFFAEY 215 (247)
Q Consensus 143 ~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLt--rHk~lvaefL~~Nyd~Ff~~y 215 (247)
.-|.+|-+=.-+..+.+||-..+.+.-+...+..++=-|.-+||..||--.. +-++-|.+.|..|=++...-.
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl 306 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFL 306 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHH
Confidence 3466776666678888888888888888888899999999999999996554 233456688888877755444
No 36
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=65.93 E-value=94 Score=29.61 Aligned_cols=155 Identities=10% Similarity=0.141 Sum_probs=96.2
Q ss_pred chHHHHHhhCCCC-ChhhhhhHHHHHHHHhhhccCCCcchhHHhh-cCHHHHHHHHHhccCh----hhhHhHHHHHHHHH
Q 025870 79 NTLRLLITCLPKL-NLEARKDATQVVANLQRQQVHSKLIASDYLE-ANIDLLDILIAGYENT----DMALHYGAMLRECI 152 (247)
Q Consensus 79 dll~~Li~~L~~L-~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~-~~peil~~L~~gY~~~----diAl~~G~mLREci 152 (247)
+++..|+..+..= +-..|.-+..++..+.+.- +.. ..-+. .-+.++..+..+-.++ ++-..+-..|..|+
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~-~~~---~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESA-DPQ---SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS-STT---SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC-Chh---hhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 4778888888765 6677887878887777642 111 00011 2367788887776554 44444444555543
Q ss_pred HH--HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhh
Q 025870 153 RH--QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (247)
Q Consensus 153 k~--e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQ 230 (247)
.+ +.+....-....+..+++.++.++.++..-|+..+.++...+......++.. .++.-.. ..+.+++.-+|.+
T Consensus 210 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~---~l~~~~~-~~~~~~~~~vr~~ 285 (861)
T 2bpt_A 210 IFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ---ALYALTI-ATMKSPNDKVASM 285 (861)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH---THHHHHH-HHTTCSSHHHHHH
T ss_pred HHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHcCCcHHHHHH
Confidence 21 0110000001122334556778889999999999999998887665555542 4555553 6778888888999
Q ss_pred hhhhhhHhhhh
Q 025870 231 AVKVGKLCASQ 241 (247)
Q Consensus 231 SLKLLgel~s~ 241 (247)
++..|+.+...
T Consensus 286 a~~~l~~l~~~ 296 (861)
T 2bpt_A 286 TVEFWSTICEE 296 (861)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 37
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=65.66 E-value=96 Score=29.62 Aligned_cols=153 Identities=10% Similarity=0.134 Sum_probs=95.4
Q ss_pred chHHHHHhhCCCC--ChhhhhhHHHHHHHHhhhccCCCcchhHHhhc-CHHHHHHHHHhccCh----hhhHhHHHHHHHH
Q 025870 79 NTLRLLITCLPKL--NLEARKDATQVVANLQRQQVHSKLIASDYLEA-NIDLLDILIAGYENT----DMALHYGAMLREC 151 (247)
Q Consensus 79 dll~~Li~~L~~L--~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~peil~~L~~gY~~~----diAl~~G~mLREc 151 (247)
+++..|+..+..= +.+.|+.+..++..+...-. | +.+.. -|.++..++.+..++ ++-..+-..|..+
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~----~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID----P--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC----H--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC----H--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 4677777777665 67788888888888876421 1 12333 378888888877654 3434444444444
Q ss_pred HHH-H-HHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchh
Q 025870 152 IRH-Q-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (247)
Q Consensus 152 ik~-e-~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkR 229 (247)
+.+ + .+......+..+..+++..+.++.++..-|+..+..+..++++....++.. .++.-.- ..+.+++--.++
T Consensus 202 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~l~~~~~-~~~~~~~~~v~~ 277 (876)
T 1qgr_A 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP---ALFAITI-EAMKSDIDEVAL 277 (876)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTT---THHHHHH-HHHTCSSHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHH-HHhcCCchHHHH
Confidence 432 0 111000001112233456778889999999999999999998877776652 2444442 455666667788
Q ss_pred hhhhhhhHhhhh
Q 025870 230 QAVKVGKLCASQ 241 (247)
Q Consensus 230 QSLKLLgel~s~ 241 (247)
+++..++.+..+
T Consensus 278 ~al~~l~~l~~~ 289 (876)
T 1qgr_A 278 QGIEFWSNVCDE 289 (876)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 38
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=65.07 E-value=63 Score=33.43 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=57.6
Q ss_pred cChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhh----ccCCCchhhhhhHHHHHHHHhh-----ChHHHHHHHHh
Q 025870 136 ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDY----IQLPNFDIAADAAATFKELLTR-----HKSTVAEFLSK 206 (247)
Q Consensus 136 ~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~y----v~~~~FeiaSDAf~tfkelLtr-----Hk~lvaefL~~ 206 (247)
++||.-..-=.+||.++.|-.-+=.-+-++.|..+++. +..++-||+.-++.++.|++.+ ....+.+|..+
T Consensus 816 ~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~ 895 (1023)
T 4hat_C 816 EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKN 895 (1023)
T ss_dssp SSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 46676666667788877763332222334488888884 4889999999999999999962 24567799988
Q ss_pred cHHHHHHHH
Q 025870 207 NYDWFFAEY 215 (247)
Q Consensus 207 Nyd~Ff~~y 215 (247)
.|-.++.+.
T Consensus 896 ~~~~~~~~~ 904 (1023)
T 4hat_C 896 YFFIFVSET 904 (1023)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888885554
No 39
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=64.09 E-value=65 Score=29.47 Aligned_cols=153 Identities=12% Similarity=0.186 Sum_probs=74.8
Q ss_pred CCCChHHHHHHHHHHHHHhhcccCchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhchHHHHHhh
Q 025870 8 KPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITC 87 (247)
Q Consensus 8 ~~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 87 (247)
++.+|..+|+.+++.. . . +.+.+.|..++..|-..+ .. -.+++.+.+ +..|+..
T Consensus 2 ~~~~P~~yv~~L~~~~-------~-~--------~~~~~~L~~L~v~Lrt~~-----~~----Wv~~F~~~G-l~~Ll~~ 55 (386)
T 2bnx_A 2 SSRSAMMYIQELRSGL-------R-D--------MHLLSCLESLRVSLNNNP-----VS----WVQTFGAEG-LASLLDI 55 (386)
T ss_dssp -CCCHHHHHHHHTSCC-------C-H--------HHHHHHHHHHHHHHHHSC-----HH----HHHHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHhcc-------c-h--------HHHHHHHHHHhHHHhcCC-----cH----HHHHHHHhH-HHHHHHH
Confidence 5789999999987621 1 0 135667777777775331 12 333333333 2223333
Q ss_pred CCCC-----------ChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhhhHhH------------
Q 025870 88 LPKL-----------NLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHY------------ 144 (247)
Q Consensus 88 L~~L-----------~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~diAl~~------------ 144 (247)
|..+ +.+-.-.+...+..++..+ +..+++.+||+.+..|..+-..+.....+
T Consensus 56 L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~-----~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~ 130 (386)
T 2bnx_A 56 LKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-----FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 130 (386)
T ss_dssp HHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH-----HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCCH-----HHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcC
Confidence 2222 1111123333344443333 45788888888888887777654332211
Q ss_pred ----H--HHHHHHHHHHHHHHHHhcchhhHhhhhhcc-CCCchhhhhhHHHHHHHHh
Q 025870 145 ----G--AMLRECIRHQSVARYVLESQHMKKFFDYIQ-LPNFDIAADAAATFKELLT 194 (247)
Q Consensus 145 ----G--~mLREcik~e~lak~iL~~~~f~~fF~yv~-~~~FeiaSDAf~tfkelLt 194 (247)
| ..+-+++.+-.-+ =....|+.+.+... ..+-|..+-++.-+..++.
T Consensus 131 ~~~~G~~~~VL~Al~~~~~~---~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~ 184 (386)
T 2bnx_A 131 PQPEDMNERVLEAMTERAEM---DEVERFQPLLDGLKSGTSIALKVGCLQLINALIT 184 (386)
T ss_dssp CSSTTHHHHHHHHHHHHHHH---HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHh---CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC
Confidence 1 1222222221111 13346777777665 4444555555555555553
No 40
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=61.38 E-value=76 Score=33.27 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=54.5
Q ss_pred cChhhhHhHHHHHHHHHHHHHHHHHHhc--chhhHhhhhh----ccCCCchhhhhhHHHHHHHHhh---ChHHHHHHHHh
Q 025870 136 ENTDMALHYGAMLRECIRHQSVARYVLE--SQHMKKFFDY----IQLPNFDIAADAAATFKELLTR---HKSTVAEFLSK 206 (247)
Q Consensus 136 ~~~diAl~~G~mLREcik~e~lak~iL~--~~~f~~fF~y----v~~~~FeiaSDAf~tfkelLtr---Hk~lvaefL~~ 206 (247)
+.||.-..-=..||.+..|=.- .+|. ++.|..+++- +..++-||+.-+..++.++|.+ +...+.+|+.+
T Consensus 842 ~~Pe~r~~ff~ll~~~~~~~f~--~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~ 919 (1073)
T 3gjx_A 842 EYPEHRTNFFLLLQAVNSHCFP--AFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQT 919 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGG--GTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhH--HHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 3455555555677777766211 1232 4567777763 3899999999999999999974 66677799998
Q ss_pred cHHHHHHHH
Q 025870 207 NYDWFFAEY 215 (247)
Q Consensus 207 Nyd~Ff~~y 215 (247)
.|-.+..+.
T Consensus 920 ~~~~~~~~i 928 (1073)
T 3gjx_A 920 YFCDILQHI 928 (1073)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888884443
No 41
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=61.10 E-value=98 Score=28.28 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=56.8
Q ss_pred CCCChHHHHHHHHHHHHHhhcccCchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc--hHHHHH
Q 025870 8 KPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN--TLRLLI 85 (247)
Q Consensus 8 ~~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~d--ll~~Li 85 (247)
+.++|.++|+.+++.. .+ +.+.+.|..++.-|-. .|. ...+++...+ .|..++
T Consensus 64 ~~~sP~~yi~~L~~~~---------~~-------~kl~~~L~sL~v~Lrt----~~~-----sWV~~F~~~Gl~~Ll~iL 118 (383)
T 3eg5_B 64 SSRSAMMYIQELRSGL---------RD-------MHLLSCLESLRVSLTS----HPV-----SWVQTFGAEGLASLLDIL 118 (383)
T ss_dssp -CCCHHHHHHHHTTTC---------CH-------HHHHHHHHHHHHHHHH----SCH-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcc---------cc-------hhHHHHHHHHHHHHhh----Ccc-----HHHHHHHHccHHHHHHHH
Confidence 3678999998886421 11 2345667777777742 121 2334444333 233333
Q ss_pred hhCC--------CCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccChhh
Q 025870 86 TCLP--------KLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM 140 (247)
Q Consensus 86 ~~L~--------~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~di 140 (247)
..+. .-|.+-.-.+...+.+++..+. ..+++.+||+.+..|..+-..+..
T Consensus 119 ~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~-----G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 119 KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp HHHHTCC-------CHHHHHHHHHHHHHHTSSHH-----HHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHhcchh-----hHHHHHcChHHHHHHHHHhCCCch
Confidence 3322 1223323344555555555443 578899999999999888765544
No 42
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=59.95 E-value=1.2e+02 Score=28.85 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=29.6
Q ss_pred hhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHH
Q 025870 172 DYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEY 215 (247)
Q Consensus 172 ~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~y 215 (247)
+.+..++-.|.+-|...+.++...++.. .+.+....+.++...
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L 228 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRIL 228 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHH
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHH
Confidence 3556788899999999999988766553 334445555566544
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=54.61 E-value=1e+02 Score=31.27 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=107.3
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccCh-h-h-hHhHHHH
Q 025870 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-D-M-ALHYGAM 147 (247)
Q Consensus 71 La~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~-d-i-Al~~G~m 147 (247)
....+.+.+.+..|+.-|..=+.+.|+.++...+++.+.... ..+-+...-.+++.-|+.--... + . -..+=.-
T Consensus 528 ~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p---~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~A 604 (810)
T 3now_A 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP---EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH---HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh---hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 345577788888999888888889999999988888763211 00000000012333333322211 1 1 1122223
Q ss_pred HHHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcc
Q 025870 148 LRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYI 226 (247)
Q Consensus 148 LREcik~-e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYV 226 (247)
|+-+..+ +.....+.....+-++.+++..++-.|-.-|..++..+.+ |+.....|.. +.+ ...-. -.|+.+++.-
T Consensus 605 L~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~-~~g-~l~~L-v~LL~s~d~~ 680 (810)
T 3now_A 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEG-NND-RVKFL-ALLCEDEDEE 680 (810)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHS-SSS-HHHHH-HHGGGCSSHH
T ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHh-ccC-cHHHH-HHHhcCCCHH
Confidence 4545554 6677777877778888899989999999999999988766 7777777773 222 33444 3789999999
Q ss_pred chhhhhhhhhHhhh
Q 025870 227 TRRQAVKVGKLCAS 240 (247)
Q Consensus 227 TkRQSLKLLgel~s 240 (247)
+|+.+.-.|+-|.+
T Consensus 681 vq~~Aa~ALanLt~ 694 (810)
T 3now_A 681 TATACAGALAIITS 694 (810)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999887
No 44
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=51.55 E-value=2e+02 Score=28.72 Aligned_cols=102 Identities=10% Similarity=0.140 Sum_probs=63.9
Q ss_pred CChhhhhhHHHHHHHHhhhccCC-----CcchhHHhhcCHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHHHHHHhcch
Q 025870 91 LNLEARKDATQVVANLQRQQVHS-----KLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQ 165 (247)
Q Consensus 91 L~FE~RKdv~~If~~llr~~~~~-----r~p~v~Yl~~~peil~~L~~gY~~~diAl~~G~mLREcik~e~lak~iL~~~ 165 (247)
.+-+.|--++.++.|.+++.-.. ..|.-+.-.=+..++..|... .+-+....|..+...++++--.+ ..+
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~p~~---Wp~ 123 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDFPDR---WPT 123 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHSTTT---CTT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCccc---hhH
Confidence 46788888999999988876432 122111111134556666553 46677777777777776653211 234
Q ss_pred hhHhhhhhccCCCchhhhhhHHHHHHHHhhCh
Q 025870 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHK 197 (247)
Q Consensus 166 ~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk 197 (247)
.+..+++.++.++...---|+.++.+++.+.+
T Consensus 124 ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55667778888777776778888888887543
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=51.38 E-value=1.7e+02 Score=27.86 Aligned_cols=147 Identities=11% Similarity=0.132 Sum_probs=89.1
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhcc--ChhhhHhHHHHHHHHHHHHH-
Q 025870 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQS- 156 (247)
Q Consensus 80 ll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~diAl~~G~mLREcik~e~- 156 (247)
++..|...+..-+.+.|+.+..++..+....... ...|+. ++++..++.+-+ ++++...+-..+..+++...
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF---MKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG---CHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555555556668888999999988887754321 123332 166776666654 45677777777777666532
Q ss_pred -----------------HHHHHhcchhhHhhhhhccC-------CCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHH
Q 025870 157 -----------------VARYVLESQHMKKFFDYIQL-------PNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFF 212 (247)
Q Consensus 157 -----------------lak~iL~~~~f~~fF~yv~~-------~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff 212 (247)
..+-.+ ...+..+++.+.. ..+.+...|..++..+-..-. ..-...+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-------~~~~~~l~ 371 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-------NHILEPVL 371 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-------GGGHHHHH
T ss_pred hhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-------HhHHHHHH
Confidence 111111 2233344444432 346676667777666554322 12344566
Q ss_pred HHHHHhhccCCCccchhhhhhhhhHhhh
Q 025870 213 AEYNSKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 213 ~~yn~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
.... .++.+++.-.|..++..||.++.
T Consensus 372 ~~l~-~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 372 EFVE-QNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHH-HHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHH-HHcCCCChhHHHHHHHHHHHHHc
Confidence 6675 78889999999999999998874
No 46
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=50.88 E-value=72 Score=29.06 Aligned_cols=116 Identities=12% Similarity=0.160 Sum_probs=73.8
Q ss_pred HHHHH-hhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcC---HHHHHHHHHhcc----ChhhhHh
Q 025870 72 TAEFF-RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYE----NTDMALH 143 (247)
Q Consensus 72 a~ei~-~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~L~~gY~----~~diAl~ 143 (247)
++.+. ..+.++.|+..|..=+++.||+++...+++-+.. ...++... |.++..|-.+-. .+++...
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~------~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP------LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG------GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH------HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 34444 4688999999999999999999999999997632 23333332 333333322211 1245555
Q ss_pred HHHHHHHHHH-HHHHHHHHhcchhhHhhhhhccCC-CchhhhhhHHHHHHHH
Q 025870 144 YGAMLRECIR-HQSVARYVLESQHMKKFFDYIQLP-NFDIAADAAATFKELL 193 (247)
Q Consensus 144 ~G~mLREcik-~e~lak~iL~~~~f~~fF~yv~~~-~FeiaSDAf~tfkelL 193 (247)
+-..|..+++ ....++.+.+..-+.++.+....+ +=+|.-.|..++..+.
T Consensus 397 ~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5555666554 345677777777788888777776 6666666666665443
No 47
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=49.64 E-value=51 Score=30.07 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccChhhhHhHHHHHHHHHHHH-HHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHH
Q 025870 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQ-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEF 203 (247)
Q Consensus 125 peil~~L~~gY~~~diAl~~G~mLREcik~e-~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaef 203 (247)
|.++..|-+ +++++-..+-..|+....+. .....+.....+-.+.+.+..++=++.-.|...++.|...+...-...
T Consensus 5 ~~lv~~L~s--~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSS--QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHS--SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344444433 36677777777788755544 444477788888899999999999999999999999887545555454
Q ss_pred HHhcHHHHHHHHHHhhcc-CCCccchhhhhhhhhHhhhh
Q 025870 204 LSKNYDWFFAEYNSKLLE-SSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 204 L~~Nyd~Ff~~yn~~Ll~-S~NYVTkRQSLKLLgel~s~ 241 (247)
.+.+- .... -.||. |++.-+++++.-.|+.|.+.
T Consensus 83 ~~~G~---i~~L-v~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 83 RRQNG---IREA-VSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHTTC---HHHH-HHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCC---HHHH-HHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 44442 2222 26777 88888888888888887753
No 48
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=49.00 E-value=9.1 Score=32.73 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc------------hHHHHHhhCCCCChhhhhhHHHHHHHH
Q 025870 39 DKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN------------TLRLLITCLPKLNLEARKDATQVVANL 106 (247)
Q Consensus 39 ~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~d------------ll~~Li~~L~~L~FE~RKdv~~If~~l 106 (247)
+...++++.|.+|-.-+.+.. .|..+..|+..+.|.+ .+..|++..| -|+| +--+..+++-+
T Consensus 81 e~ir~IA~qLa~igD~le~sI----~p~~v~~L~~~~~N~slsEEdrr~~LAaaleql~Qt~P-~dme-kEk~~L~lamL 154 (195)
T 1ddb_A 81 EIIHNIARHLAQIGDEMDHNI----QPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAFP-RDME-NDKAMLIMTML 154 (195)
T ss_dssp CSHHHHHHHHHHHHHHHGGGC----CSSSHHHHHHHHCCSSSSSSSTTHHHHHHHHHHHHHSC-STHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHcC-chHH-HHHHHHHHHHH
Confidence 344689999999999998743 3466777887776443 3677888888 7888 44578889999
Q ss_pred hhhccCCCcc---------hhHHhhcC
Q 025870 107 QRQQVHSKLI---------ASDYLEAN 124 (247)
Q Consensus 107 lr~~~~~r~p---------~v~Yl~~~ 124 (247)
|-.++-+..| ||+||..|
T Consensus 155 LaKKVa~htPsLLrdVf~TTVnFInqN 181 (195)
T 1ddb_A 155 LAKKVASHAPSLLRDVFHTTVNFINQN 181 (195)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 9988776666 45666554
No 49
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=47.72 E-value=1.2e+02 Score=25.32 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=19.5
Q ss_pred chhHHhhcCHHHHHHHHHhccChhh
Q 025870 116 IASDYLEANIDLLDILIAGYENTDM 140 (247)
Q Consensus 116 p~v~Yl~~~peil~~L~~gY~~~di 140 (247)
+..+++.+||+.+..|..+-+.+..
T Consensus 86 ~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 86 FGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp HHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred HHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 4578899999998888887765544
No 50
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=47.29 E-value=46 Score=28.10 Aligned_cols=139 Identities=8% Similarity=0.042 Sum_probs=69.9
Q ss_pred CCCChhhhhhHHHHHHH-HhhhccCCCcchhHHhhcCHHHHHHHHHhc-cChhhhH--hHHHHHHHHHHHHHHHHHHhcc
Q 025870 89 PKLNLEARKDATQVVAN-LQRQQVHSKLIASDYLEANIDLLDILIAGY-ENTDMAL--HYGAMLRECIRHQSVARYVLES 164 (247)
Q Consensus 89 ~~L~FE~RKdv~~If~~-llr~~~~~r~p~v~Yl~~~peil~~L~~gY-~~~diAl--~~G~mLREcik~e~lak~iL~~ 164 (247)
..=++..||.+..-... ++.-. .+... --....+++..|..+- .++++.. .+...|. .+|+-+ ..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~--~~i~~--~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~------~la~~l-~~ 94 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQT--KKLKS--TSQNYSNLLGIYGHIIQKDANIQAVALAAQSVE------LICDKL-KT 94 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGC--CCBCC--TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH------HHHHHH-CT
T ss_pred hcCCHHHHHHHHHHHHHHHHhcC--Ccccc--CcccHHHHHHHHHHHhccCCCHHHHHHHHHHHH------HHHHhc-cc
Confidence 44578889988877777 76521 11110 0011268888888887 4555433 2222222 222211 10
Q ss_pred hhhH---------hhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhh
Q 025870 165 QHMK---------KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVG 235 (247)
Q Consensus 165 ~~f~---------~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLL 235 (247)
+.|. ..++.+.-..=.|..-|......+...-.+ .+.+ ...+...+... ..|.+.|.=+|.++++.|
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~--~~l~~ll~~l~-~~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASS--GRNEDMLKDIL-EHMKHKTPQIRMECTQLF 170 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTT--CTTHHHHHHHH-HHTTCSSHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccC--CcHHHHHHHHH-HHHcCCChHHHHHHHHHH
Confidence 1222 233333333333322222222222211000 0000 11456666664 688999999999999999
Q ss_pred hHhhhhh
Q 025870 236 KLCASQW 242 (247)
Q Consensus 236 gel~s~~ 242 (247)
+.++..+
T Consensus 171 ~~~~~~~ 177 (249)
T 2qk1_A 171 NASMKEE 177 (249)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 9999665
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=44.60 E-value=1.9e+02 Score=26.54 Aligned_cols=153 Identities=12% Similarity=0.161 Sum_probs=101.3
Q ss_pred chHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHH--hccChhhhHhHHHHHHHHHH-HH
Q 025870 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIA--GYENTDMALHYGAMLRECIR-HQ 155 (247)
Q Consensus 79 dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~--gY~~~diAl~~G~mLREcik-~e 155 (247)
..+..|+..|..=+-+.+.+++....++.....+ ..+.+.. ..++..|+. +..++++-..+-..|..+.. .+
T Consensus 232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~----~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~ 306 (510)
T 3ul1_B 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH----HHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh----hHHHHHh-cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence 3566677777777777777777777776542211 1111211 112222211 23455555556666666543 45
Q ss_pred HHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhh
Q 025870 156 SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVG 235 (247)
Q Consensus 156 ~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLL 235 (247)
..+..++....+..+...+..++=+|-..|..++..+....+.......+.+ ++...- .++.++++-+|+.+...|
T Consensus 307 ~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~v~~~Aa~aL 382 (510)
T 3ul1_B 307 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG---LVPFLV-GVLSKADFKTQKEAAWAI 382 (510)
T ss_dssp HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC---CHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 6777788888888888899999999999999999988776666666666555 555553 789999999999999999
Q ss_pred hHhhh
Q 025870 236 KLCAS 240 (247)
Q Consensus 236 gel~s 240 (247)
+-+.+
T Consensus 383 ~Nl~~ 387 (510)
T 3ul1_B 383 TNYTS 387 (510)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88775
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=43.65 E-value=1.6e+02 Score=25.55 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=89.2
Q ss_pred HHHhhchHHHHHhhCCC-CChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhc--cChhhhHhHHHHHHH
Q 025870 74 EFFRENTLRLLITCLPK-LNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (247)
Q Consensus 74 ei~~~dll~~Li~~L~~-L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~diAl~~G~mLRE 150 (247)
.+.+.+.+..|+..|.. -+-+.|+.++-..+++.|... |..+-+... ..+..|+..- .++++--.+-..|..
T Consensus 119 ~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~----~~~~~~~~~-ggi~~L~~lL~~~d~~v~~~A~~aLs~ 193 (296)
T 1xqr_A 119 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE----AGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQN 193 (296)
T ss_dssp HHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHT-THHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCc----HHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45566778888887763 456788888888899988432 223323322 2333333222 345555555555555
Q ss_pred HHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHH--hcHHHHHHHH
Q 025870 151 CIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLS--KNYDWFFAEY 215 (247)
Q Consensus 151 cik~-e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~--~Nyd~Ff~~y 215 (247)
...+ +...+.+.....+..+++.+..++.+|-.-|..++..+++..+..+.++=. ..+-...++-
T Consensus 194 L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~ 261 (296)
T 1xqr_A 194 LLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261 (296)
T ss_dssp HHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred HHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence 4443 556677888888999999999999999999999999999987766655432 2354555443
No 53
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=41.34 E-value=65 Score=25.86 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHhh------chHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHH--Hh
Q 025870 63 PVSEACAQLTAEFFRE------NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILI--AG 134 (247)
Q Consensus 63 p~~e~~~qLa~ei~~~------dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~--~g 134 (247)
|..-...++|+..++. .++..|..-|..=.-..+--+-+|...|++ .+....++.+..|..+|..|. +|
T Consensus 27 ~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~---~Gs~~f~~~~r~~~~~Ik~l~~F~g 103 (140)
T 1vdy_A 27 APVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG---KSGSEFRREMQRNSVAVRNLFHYKG 103 (140)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHTTHHHHTTTTCCC
T ss_pred CcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHH---hCCHHHHHHHHHhHHHHHHHHhcCC
Confidence 3335678888888884 356777777777655544455566666665 223456788888888887774 44
Q ss_pred ccChhhhHhHHHHHHHHH
Q 025870 135 YENTDMALHYGAMLRECI 152 (247)
Q Consensus 135 Y~~~diAl~~G~mLREci 152 (247)
..+|--+=.-|...|+-.
T Consensus 104 ~~dp~~G~d~g~~VR~~A 121 (140)
T 1vdy_A 104 HPDPLKGDALNKAVRETA 121 (140)
T ss_dssp CCCTTTSSCHHHHHHHHH
T ss_pred CCCcccccchhHHHHHHH
Confidence 444435556677777654
No 54
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=41.15 E-value=30 Score=29.52 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhchHHH------------HHhhCCCCChhhhhhHHHHHHH
Q 025870 38 EDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRL------------LITCLPKLNLEARKDATQVVAN 105 (247)
Q Consensus 38 ~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~------------Li~~L~~L~FE~RKdv~~If~~ 105 (247)
|+....|+++|.+|-.-+.+. ..|..|..|+..+.|.++-.. +++-.| .|.| +--++.+.+-
T Consensus 82 Eeiir~IA~qLAqiGD~md~s----I~P~lV~~La~qf~N~~lsEEdrr~~LAaaleql~Qt~P-~Dme-qEKtmLvlam 155 (197)
T 2bid_A 82 EDIIRNIARHLAQVGDSMDRS----IPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYP-RDME-KEKTMLVLAL 155 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCTTCHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTSC-CSSC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHCC-CcHh-HHHHHHHHHH
Confidence 344467999999999999874 445778888888888776533 333322 1333 2235566777
Q ss_pred HhhhccCCCcc---------hhHHhhcC
Q 025870 106 LQRQQVHSKLI---------ASDYLEAN 124 (247)
Q Consensus 106 llr~~~~~r~p---------~v~Yl~~~ 124 (247)
||-.++-+-.| ||.||..|
T Consensus 156 LLAKKVa~htPSLLrdVF~TTVnfInqN 183 (197)
T 2bid_A 156 LLAKKVASHTPSLLRDVFHTTVNFINQN 183 (197)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 77776655444 45666554
No 55
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=41.15 E-value=2.1e+02 Score=26.19 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=102.7
Q ss_pred chHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHH--hccChhhhHhHHHHHHHHHH-HH
Q 025870 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIA--GYENTDMALHYGAMLRECIR-HQ 155 (247)
Q Consensus 79 dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~--gY~~~diAl~~G~mLREcik-~e 155 (247)
+.++.|+..|..=+-+.+.+++....++.....+ ..+.+.. ..++..|+. +..++++-..+-..|+.+.. .+
T Consensus 251 ~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~----~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 251 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 325 (529)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH----HHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh----hHHHHHh-ccchHHHHHHhcCCChhHHHHHHHHHHHHHccch
Confidence 3566777777777777888877777766542211 1111211 112222211 23456666666667776655 35
Q ss_pred HHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhh
Q 025870 156 SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVG 235 (247)
Q Consensus 156 ~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLL 235 (247)
.....++....+..+...+..++=+|-..|..++..+-..++......++.+ .+... ..++.++++-+|+.+..-|
T Consensus 326 ~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g---~i~~L-v~lL~~~~~~v~~~A~~aL 401 (529)
T 3tpo_A 326 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG---LVPFL-VGVLSKADFKTQKAAAWAI 401 (529)
T ss_dssp HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHH-HHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC---cHHHH-HHHhcCCCHHHHHHHHHHH
Confidence 5667778887788888889999999999999999988776666666666655 44555 3789999999999999998
Q ss_pred hHhhh
Q 025870 236 KLCAS 240 (247)
Q Consensus 236 gel~s 240 (247)
+-|.+
T Consensus 402 ~nl~~ 406 (529)
T 3tpo_A 402 TNYTS 406 (529)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88875
No 56
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=39.32 E-value=1.8e+02 Score=29.33 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=65.2
Q ss_pred cChhhhHhHHHHHHHHHHHHHHHHHHhc-ch-hhHhhhh----hccCCCchhhhhhHHHHHHHHhhCh-----HHHHHHH
Q 025870 136 ENTDMALHYGAMLRECIRHQSVARYVLE-SQ-HMKKFFD----YIQLPNFDIAADAAATFKELLTRHK-----STVAEFL 204 (247)
Q Consensus 136 ~~~diAl~~G~mLREcik~e~lak~iL~-~~-~f~~fF~----yv~~~~FeiaSDAf~tfkelLtrHk-----~lvaefL 204 (247)
++||+.-.+=.+|..++++-. ..++. ++ .|..+++ -+..+.-+++.-|...+.++++..+ ..+..|.
T Consensus 816 ~~pd~~~~~f~ll~~i~~~~~--~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~ 893 (1049)
T 3m1i_C 816 EYPEHRVEFYKLLKVINEKSF--AAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFH 893 (1049)
T ss_dssp SSHHHHHHHHHHHHHHHHHCT--HHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhCH--HHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 467777777555555555422 12331 33 3544444 3578999999999999999998654 3455676
Q ss_pred HhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhhhhe
Q 025870 205 SKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQWVI 244 (247)
Q Consensus 205 ~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~~~~ 244 (247)
.+.|-.+....=..|..+. -|-.++...++|..++-
T Consensus 894 ~~~~~~l~~~~~~~l~~~~----h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 894 KNYFFIFVSETFFVLTDSD----HKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSTT----CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcch----HhhhHHHHHHHHHHHHH
Confidence 6665555544432344333 67888888888888753
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=37.76 E-value=2e+02 Score=24.79 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=57.5
Q ss_pred CHHHHHHHHHhccCh--hhhHh--HHHHHHHHHH---HHHHHHHHhcchhhHhhhhhccCC--CchhhhhhHHHHHHHHh
Q 025870 124 NIDLLDILIAGYENT--DMALH--YGAMLRECIR---HQSVARYVLESQHMKKFFDYIQLP--NFDIAADAAATFKELLT 194 (247)
Q Consensus 124 ~peil~~L~~gY~~~--diAl~--~G~mLREcik---~e~lak~iL~~~~f~~fF~yv~~~--~FeiaSDAf~tfkelLt 194 (247)
-|+++..|+....++ +-... +=..|+...+ .+.+..++ .+.+..+...++.+ +=+|-.-|..++..++.
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 488888888777654 33222 2222333222 11111000 12333445566665 56666667776666542
Q ss_pred hChHHHHHHHHhcH-----HH-HHHHHHHhhccCCCccchhhhhhhhhHhhhhh
Q 025870 195 RHKSTVAEFLSKNY-----DW-FFAEYNSKLLESSNYITRRQAVKVGKLCASQW 242 (247)
Q Consensus 195 rHk~lvaefL~~Ny-----d~-Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~~ 242 (247)
|+..+. .. +.... ..++.+++--.|+++++.|+++....
T Consensus 204 --------~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 204 --------FTKANFDKESERHFIMQVV-CEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp --------TTHHHHTSHHHHHHHHHHH-HHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred --------HHHHhhhhhHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 111111 12 23333 25778888888999999999987654
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=37.57 E-value=1.5e+02 Score=26.58 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHH
Q 025870 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFL 204 (247)
Q Consensus 125 peil~~L~~gY~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL 204 (247)
+.++..|....++++--.-.+.+---..=-+.+..-.+....+-.++.+++.++-+|-..|..++..+...... ++.
T Consensus 401 ~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~ 477 (588)
T 1b3u_A 401 QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWA 477 (588)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhH
Q ss_pred HhcHHHHHHHHHHhhccCCCccchhhhhhhhhHhhhh
Q 025870 205 SKNYDWFFAEYNSKLLESSNYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 205 ~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s~ 241 (247)
.+.++.... .++.++||-+|..++..+|.+...
T Consensus 478 ---~~~llp~l~-~~~~~~~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 478 ---HATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp ---HHHTHHHHH-HTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHh
No 59
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=36.88 E-value=2.5e+02 Score=25.72 Aligned_cols=171 Identities=11% Similarity=0.079 Sum_probs=104.8
Q ss_pred HHHHHHHHHhhcccCchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhchHHHHHhhCCCCChhhh
Q 025870 17 RQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEAR 96 (247)
Q Consensus 17 r~l~e~l~~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~L~~L~FE~R 96 (247)
+.+++.+.+|.++++ ++.-+.|..+|.++..|.+ +|.|+.+.|=+..|+.....-+-+..
T Consensus 118 ~ra~~iiekL~~~~~----------~~lr~aLfsLk~~~q~D~~----------Fa~EFI~~~GL~~Li~vi~~~~gN~q 177 (339)
T 3dad_A 118 VRVNAILEKLYSSSG----------PELRRSLFSLKQIFQEDKD----------LVPEFVHSEGLSCLIRVGAAADHNYQ 177 (339)
T ss_dssp HHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHHTCTT----------HHHHHHHTTHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHhcCCc----------HHHHHHHHHHHHHhhcchH----------HHHHHHHhccHHHHHHHHHhcChHHH
Confidence 344555556654432 3677789999999985443 99999999988888888887777766
Q ss_pred hhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccC--hhhhHhHHHHHHHHHHH-HHHHHHHhcchh-------
Q 025870 97 KDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN--TDMALHYGAMLRECIRH-QSVARYVLESQH------- 166 (247)
Q Consensus 97 Kdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~--~diAl~~G~mLREcik~-e~lak~iL~~~~------- 166 (247)
.-+-.-|..++-+-.| .+=+..||+.+..+..--+. +.+.=.+-.+|.-++-+ |..+..+...-.
T Consensus 178 ~Y~L~AL~~LM~~v~G-----m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~ 252 (339)
T 3dad_A 178 SYILRALGQLMLFVDG-----MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTG 252 (339)
T ss_dssp HHHHHHHHHHTTSHHH-----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccc-----ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccC
Confidence 6666666666554221 12244589988888654442 33333455555554443 333333332212
Q ss_pred ---hHhhhhhcc---CCCchhhhhhHHHHHHHHhhC------hHHHHHHHHhcHHHHH
Q 025870 167 ---MKKFFDYIQ---LPNFDIAADAAATFKELLTRH------KSTVAEFLSKNYDWFF 212 (247)
Q Consensus 167 ---f~~fF~yv~---~~~FeiaSDAf~tfkelLtrH------k~lvaefL~~Nyd~Ff 212 (247)
+....+.++ .++=|+.--|++-+..+|..= ..++.++=..|.+...
T Consensus 253 ~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i 310 (339)
T 3dad_A 253 APPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALV 310 (339)
T ss_dssp CCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHH
T ss_pred CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHH
Confidence 556666666 677777778888777777532 2444455455665554
No 60
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=36.58 E-value=2.7e+02 Score=26.07 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=76.6
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHH----HHHHhccChhhhHhHHHHHHHHH--H
Q 025870 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLD----ILIAGYENTDMALHYGAMLRECI--R 153 (247)
Q Consensus 80 ll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~----~L~~gY~~~diAl~~G~mLREci--k 153 (247)
++..++..++.=+++.||-+..-...+.+ .+||.+. .+.+...+++-..- |.-||-.. +
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--------------~~~e~~~l~~n~l~kdL~~~n~~ir-~~AL~~L~~i~ 114 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAK--------------SQPDMAIMAVNSFVKDCEDPNPLIR-ALAVRTMGCIR 114 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHH--------------HSHHHHHTTHHHHGGGSSSSSHHHH-HHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------------cCchHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHcCC
Confidence 45566677888888888877665555443 2344432 33333444333222 22233211 2
Q ss_pred HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhh
Q 025870 154 HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVK 233 (247)
Q Consensus 154 ~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLK 233 (247)
.+.+++.+. -.+.+.+..++-.|-.-|...+-.+....+.++-+ +.++.... .+|.++|...++.++.
T Consensus 115 ~~~~~~~l~-----~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~------~~~~~~l~-~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 115 VDKITEYLC-----EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED------QGFLDSLR-DLIADSNPMVVANAVA 182 (591)
T ss_dssp SGGGHHHHH-----HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHH-HTTSCSCHHHHHHHHH
T ss_pred hHHHHHHHH-----HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc------ccHHHHHH-HHhCCCChhHHHHHHH
Confidence 222333322 11233445566666555666555555544544321 35788885 8999999999999999
Q ss_pred hhhHhhhh
Q 025870 234 VGKLCASQ 241 (247)
Q Consensus 234 LLgel~s~ 241 (247)
+|+++...
T Consensus 183 aL~~i~~~ 190 (591)
T 2vgl_B 183 ALSEISES 190 (591)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhh
Confidence 99998653
No 61
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=35.92 E-value=1.5e+02 Score=22.93 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhchH
Q 025870 39 DKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTL 81 (247)
Q Consensus 39 ~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~dll 81 (247)
++.+|++|.|..|-.-|-..+=.++..+...+|++++-+.|+-
T Consensus 36 ~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~ 78 (118)
T 2yru_A 36 QVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWD 78 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 3468999999999888865544555566788899998888764
No 62
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=34.12 E-value=91 Score=26.91 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=40.6
Q ss_pred CCChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhh---------------------cc---------
Q 025870 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSIL---------------------YG--------- 57 (247)
Q Consensus 9 ~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL---------------------~G--------- 57 (247)
|+.-..+|+.+.+.|.+++......=.++.++. +++.+.-.+++..+ ||
T Consensus 122 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~ 201 (284)
T 2prs_A 122 PEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTV 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCEEEES
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECccHHHHHHHCCCeEeEeecc
Confidence 344457899999999999854311111222222 23332222333222 12
Q ss_pred CCCCCCChHHHHHHHHHHHhhc
Q 025870 58 NSESEPVSEACAQLTAEFFREN 79 (247)
Q Consensus 58 ~~e~ep~~e~~~qLa~ei~~~d 79 (247)
.++.||++..+++|.+.+-..+
T Consensus 202 ~~~~eps~~~l~~l~~~ik~~~ 223 (284)
T 2prs_A 202 NPEIQPGAQRLHEIRTQLVEQK 223 (284)
T ss_dssp STTSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHcC
Confidence 3467899999999988887665
No 63
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=30.94 E-value=92 Score=27.10 Aligned_cols=71 Identities=11% Similarity=0.024 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhhc---------------------c---------C
Q 025870 10 RTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILY---------------------G---------N 58 (247)
Q Consensus 10 KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL~---------------------G---------~ 58 (247)
+.-..+|+.+.+.|..++......=.++.++. +++.+.-.+++..+- | .
T Consensus 128 ~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~ 207 (286)
T 3gi1_A 128 VLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGISGIS 207 (286)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHHHHHTTCEEEEEECSC
T ss_pred HHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHCCCeEeeccccC
Confidence 44456899999999999854321111222222 233333333333331 1 2
Q ss_pred CCCCCChHHHHHHHHHHHhhch
Q 025870 59 SESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 59 ~e~ep~~e~~~qLa~ei~~~dl 80 (247)
++.||++..+++|.+.+-+.+.
T Consensus 208 ~~~eps~~~l~~l~~~ik~~~v 229 (286)
T 3gi1_A 208 PEQEPSPRQLKEIQDFVKEYNV 229 (286)
T ss_dssp C---CCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHcCC
Confidence 4678999999999988877663
No 64
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=29.75 E-value=1e+02 Score=26.55 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhh---------------------cc---------C
Q 025870 10 RTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSIL---------------------YG---------N 58 (247)
Q Consensus 10 KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL---------------------~G---------~ 58 (247)
+.-..+|+.+.+.|..++......=.++.++. +++.+.-.+++..+ || .
T Consensus 126 ~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~ 205 (284)
T 3cx3_A 126 EKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGLNQLGIAGIS 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTCCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHcCCEEeeccCCC
Confidence 34457899999999999854311111222222 23333222333222 12 3
Q ss_pred CCCCCChHHHHHHHHHHHhhch
Q 025870 59 SESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 59 ~e~ep~~e~~~qLa~ei~~~dl 80 (247)
++.||++..+++|.+.+-..+.
T Consensus 206 ~~~eps~~~l~~l~~~ik~~~v 227 (284)
T 3cx3_A 206 PEQEPSPRQLTEIQEFVKTYKV 227 (284)
T ss_dssp TTCCCCSHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHcCC
Confidence 4678999999999888877653
No 65
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=28.06 E-value=3.4e+02 Score=24.54 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=70.4
Q ss_pred HHHHHHHHHh---------ccChhhhHhHHHHHHHHHHHHHHHHHHhcchhhHhhhhh----ccCCCchhhhhhHHHHHH
Q 025870 125 IDLLDILIAG---------YENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDY----IQLPNFDIAADAAATFKE 191 (247)
Q Consensus 125 peil~~L~~g---------Y~~~diAl~~G~mLREcik~e~lak~iL~~~~f~~fF~y----v~~~~FeiaSDAf~tfke 191 (247)
|.|++.+..+ .+.||.-..-=.+||.|..|---|=.-|-.++|..+.+- +..+.-+||--+..+..+
T Consensus 114 p~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ 193 (321)
T 1w9c_A 114 PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193 (321)
T ss_dssp HHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 7777776433 478999999999999999884333334777888888885 589999999999999999
Q ss_pred HHhh---ChHHHHHHHHhcHHHHHHHHH
Q 025870 192 LLTR---HKSTVAEFLSKNYDWFFAEYN 216 (247)
Q Consensus 192 lLtr---Hk~lvaefL~~Nyd~Ff~~yn 216 (247)
+|.+ +...+.+|..+.|-....+.=
T Consensus 194 ll~n~~~~~~~~~~Fy~~fy~~il~~if 221 (321)
T 1w9c_A 194 LLQNVAQEEAAAQSFYQTYFCDILQHIF 221 (321)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 9974 455666777777776666554
No 66
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=26.32 E-value=1e+02 Score=27.14 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhh---------------------cc---------
Q 025870 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSIL---------------------YG--------- 57 (247)
Q Consensus 9 ~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL---------------------~G--------- 57 (247)
|+.-..+|+.+.+.|.+++......=.++.++. +++.+.-.+++..+ ||
T Consensus 138 p~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~~~ 217 (312)
T 2o1e_A 138 PVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYLAKEYGLKQVPIAGL 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEEEESSCTTHHHHHHTTCEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEECCchHHHHHHCCCeEEEeecc
Confidence 344457899999999999854311111222222 23333222333322 22
Q ss_pred CCCCCCChHHHHHHHHHHHhhch
Q 025870 58 NSESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 58 ~~e~ep~~e~~~qLa~ei~~~dl 80 (247)
..+.||++..+++|.+.+-..+.
T Consensus 218 ~~~~eps~~~l~~l~~~ik~~~v 240 (312)
T 2o1e_A 218 SPDQEPSAASLAKLKTYAKEHNV 240 (312)
T ss_dssp CSSSCCCHHHHHHHHHHTTSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Confidence 24678999888888887766553
No 67
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=25.99 E-value=1.5e+02 Score=24.23 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhccC--CCCCC--ChHHHHHHHHHHH
Q 025870 42 AELCKNIRELKSILYGN--SESEP--VSEACAQLTAEFF 76 (247)
Q Consensus 42 ee~sK~L~~mK~iL~G~--~e~ep--~~e~~~qLa~ei~ 76 (247)
+.+-.+..-|.++|..- ++..+ ..|.+.+|++.+-
T Consensus 63 e~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck 101 (158)
T 1naf_A 63 EEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCE 101 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHH
Confidence 34444455555556421 11111 4455555555443
No 68
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=25.97 E-value=2.4e+02 Score=23.53 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhccC--CCCCC--ChHHHHHHHHHHHh
Q 025870 43 ELCKNIRELKSILYGN--SESEP--VSEACAQLTAEFFR 77 (247)
Q Consensus 43 e~sK~L~~mK~iL~G~--~e~ep--~~e~~~qLa~ei~~ 77 (247)
++-.+..-|.++|..- ++..+ ..|.+.+|++.+-+
T Consensus 80 ~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~ 118 (186)
T 1oxz_A 80 EVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCER 118 (186)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHH
Confidence 3444555566666432 22222 45656666555443
No 69
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=25.50 E-value=4.2e+02 Score=26.81 Aligned_cols=151 Identities=9% Similarity=0.074 Sum_probs=91.5
Q ss_pred hHHHHHhhCCCC-ChhhhhhHHHHHHHHhhhccCCCcchhHHhhc-C--HHHHHHHHHhccChhhhHhHHHHHHHHHHHH
Q 025870 80 TLRLLITCLPKL-NLEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGYENTDMALHYGAMLRECIRHQ 155 (247)
Q Consensus 80 ll~~Li~~L~~L-~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~L~~gY~~~diAl~~G~mLREcik~e 155 (247)
.++.|+.-|..= +-..+.++....+|+.....+. .+-+.. . |.++..|.+ +++.+--.+-..|.....+.
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~----~~~Ii~aG~l~~Lv~LL~s--~~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESV----RQRIIKEQGVSKIEYYLME--DHLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH----HHHHHHTTHHHHHHHHHHS--CCTTHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH----HHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCh
Confidence 456666665421 1122335555555555422111 111211 1 334444332 34444444444444444444
Q ss_pred HHHHHHhc-chhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHH-hcHHHHHHHHHHhhccCCCccchhhhhh
Q 025870 156 SVARYVLE-SQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLS-KNYDWFFAEYNSKLLESSNYITRRQAVK 233 (247)
Q Consensus 156 ~lak~iL~-~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~-~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLK 233 (247)
.....+.. .+.+.-+..+++.++.++...|-.++.-+-.-++..+...+. .+ +.... ..|+.+++.=+++.++-
T Consensus 655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g---~I~~L-v~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS---WLDIL-HTLIANPSPAVQHRGIV 730 (810)
T ss_dssp HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT---HHHHH-HHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC---CHHHH-HHHHCCCCHHHHHHHHH
Confidence 43333444 567888889999999999999999998876657777666666 44 55555 38999999999999999
Q ss_pred hhhHhhh
Q 025870 234 VGKLCAS 240 (247)
Q Consensus 234 LLgel~s 240 (247)
-|+-+++
T Consensus 731 aL~NL~~ 737 (810)
T 3now_A 731 IILNMIN 737 (810)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988875
No 70
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=25.08 E-value=83 Score=20.96 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.5
Q ss_pred CCChHHHHHHHHHHHHHhh
Q 025870 9 PRTPVDIVRQTRDLIIYAN 27 (247)
Q Consensus 9 ~KtP~elVr~l~e~l~~L~ 27 (247)
||+|+|+...+-..|..+.
T Consensus 1 p~~~~dLt~~vq~LL~qmq 19 (48)
T 3ci9_A 1 PKTVQDLTSVVQTLLQQMQ 19 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999888777777665
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=25.07 E-value=3.4e+02 Score=23.64 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=97.9
Q ss_pred HHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhH----------------Hh--------hcCH
Q 025870 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASD----------------YL--------EANI 125 (247)
Q Consensus 70 qLa~ei~~~dll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~----------------Yl--------~~~p 125 (247)
-++++.|+..++-.+|..|..==|..+|.+-.|..++.+...+---|.++ -+ .-+|
T Consensus 23 ii~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 23 ILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHHHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 47888999999999999999888899999999988887754333333222 11 2377
Q ss_pred HHHHHH----HHhc--cChhhhHhHHHHHHHHHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChH
Q 025870 126 DLLDIL----IAGY--ENTDMALHYGAMLRECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKS 198 (247)
Q Consensus 126 eil~~L----~~gY--~~~diAl~~G~mLREcik-~e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~ 198 (247)
|++.-+ ..-| .++.+-++.|..|-|..| +..++. ..|..++...+.++ ++ .|
T Consensus 103 e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd-~~--------------Dk- 161 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKN-RE--------------DK- 161 (253)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSS-HH--------------HH-
T ss_pred HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCC-hH--------------HH-
Confidence 776644 4445 367777788877777666 333444 23555666666666 21 12
Q ss_pred HHH-HHHHh---cHHH----HHHHHHHhhccCCCccchhhhhhhhhHhhh
Q 025870 199 TVA-EFLSK---NYDW----FFAEYNSKLLESSNYITRRQAVKVGKLCAS 240 (247)
Q Consensus 199 lva-efL~~---Nyd~----Ff~~yn~~Ll~S~NYVTkRQSLKLLgel~s 240 (247)
++| .|++. |--+ |-.+.- .||...|=+.|--++.-|+.++.
T Consensus 162 l~aLnFi~alGen~~~yv~PfLprL~-aLL~D~deiVRaSaVEtL~~lA~ 210 (253)
T 2db0_A 162 LTALNFIEAMGENSFKYVNPFLPRII-NLLHDGDEIVRASAVEALVHLAT 210 (253)
T ss_dssp HHHHHHHHTCCTTTHHHHGGGHHHHH-GGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCccccCcchHHHH-HHHcCcchhhhHHHHHHHHHHHH
Confidence 333 56652 2111 344442 79999999999999999988863
No 72
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.44 E-value=1.5e+02 Score=25.77 Aligned_cols=72 Identities=18% Similarity=0.101 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhhc---------------------c-------CC
Q 025870 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILY---------------------G-------NS 59 (247)
Q Consensus 9 ~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL~---------------------G-------~~ 59 (247)
|+.-..+|+.+.+.|.+++......=.++.++. +++.+.-.+++..+- | ..
T Consensus 138 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~ 217 (291)
T 1pq4_A 138 PTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARDYNLVQIPIEVE 217 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHTTCEEEESCBT
T ss_pred HHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEECCchHHHHHHCCCEEeecccC
Confidence 444567899999999999854311112222222 333333333333331 1 12
Q ss_pred CCCCChHHHHHHHHHHHhhch
Q 025870 60 ESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 60 e~ep~~e~~~qLa~ei~~~dl 80 (247)
+.+|++..+++|.+.+-..+.
T Consensus 218 ~~eps~~~l~~l~~~ik~~~v 238 (291)
T 1pq4_A 218 GQEPSAQELKQLIDTAKENNL 238 (291)
T ss_dssp TBCCCHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 468888888888888766653
No 73
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=24.34 E-value=2.2e+02 Score=24.34 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhhcccCc-hhhhHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHh
Q 025870 13 VDIVRQTRDLIIYANRSADV-RESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFR 77 (247)
Q Consensus 13 ~elVr~l~e~l~~L~~~~~~-~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~ 77 (247)
.|.|....|-|.+||.-.+. ++=+.-...=+++|.|..--+.++|+++ -.+|.|..|+.++++
T Consensus 75 re~v~d~l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~p--ld~eLc~~l~~qL~~ 138 (204)
T 2jqq_A 75 QEIIKDVLEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIEP--LEEEICSGLIEQLYK 138 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHH
Confidence 57788888888888742110 0000011113578888887888999865 456788888888774
No 74
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=23.87 E-value=5.8e+02 Score=25.84 Aligned_cols=149 Identities=11% Similarity=0.117 Sum_probs=82.1
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhccCh----hhhHhHHHHHHHHHHH-
Q 025870 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT----DMALHYGAMLRECIRH- 154 (247)
Q Consensus 80 ll~~Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~----diAl~~G~mLREcik~- 154 (247)
++..+...|..=+...|..+...++.+...-.+. ...|+ ++++..++..-+++ ++...+-..+...++.
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~---l~~~l---~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA---LTQHI---PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT---TGGGH---HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh---hHHHH---HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 3444555577767778877888888777752111 11233 66777776666554 3333322223222220
Q ss_pred --HHHHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChH-------HHHHHHHhcHHHHHHHHHHhhc--cCC
Q 025870 155 --QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKS-------TVAEFLSKNYDWFFAEYNSKLL--ESS 223 (247)
Q Consensus 155 --e~lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~-------lvaefL~~Nyd~Ff~~yn~~Ll--~S~ 223 (247)
+.+..++ .+.+-.++..++.++..|.+.|..++.++...-.. -...|+ +.++...- ..+ .++
T Consensus 509 ~~~~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~----~~ll~~ll-~~l~~~d~ 581 (1230)
T 1u6g_C 509 SPQVFHPHV--QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI----KDLFTCTI-KRLKAADI 581 (1230)
T ss_dssp CGGGGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH----HHHHHHHH-HHHSCSSS
T ss_pred CHHHHHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH----HHHHHHHH-HHHhccCC
Confidence 1111111 12233445567788899988998888887732111 222333 33443331 334 567
Q ss_pred CccchhhhhhhhhHhhhh
Q 025870 224 NYITRRQAVKVGKLCASQ 241 (247)
Q Consensus 224 NYVTkRQSLKLLgel~s~ 241 (247)
++-.|..++..||.|+..
T Consensus 582 ~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICN 599 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 788888889999988764
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=23.73 E-value=2.8e+02 Score=22.18 Aligned_cols=138 Identities=9% Similarity=0.109 Sum_probs=83.0
Q ss_pred HHhhCCCCChhhhhhHHHHHHHHhhhccCCCcchhHHhhcCHHHHHHHHHhcc-ChhhhH------hHHHHHHHHHHHHH
Q 025870 84 LITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE-NTDMAL------HYGAMLRECIRHQS 156 (247)
Q Consensus 84 Li~~L~~L~FE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~-~~diAl------~~G~mLREcik~e~ 156 (247)
+...+..=++..|+.+..-...++.-..+ ... ....+++..|...-. +++... ..|.+.+. ++. .
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~--~~~----~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~-l~~-~ 91 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPK--LEN----GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG-LAK-R 91 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSS--BCC----CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HGG-G
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCC--CCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-Hhh-h
Confidence 33445567888899988888888774111 111 123567777766663 443322 12222211 110 0
Q ss_pred HHHHHhcchhhHhhhhhccCCCchhhhhhHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCccchhhhhhhhh
Q 025870 157 VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKVGK 236 (247)
Q Consensus 157 lak~iL~~~~f~~fF~yv~~~~FeiaSDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~yn~~Ll~S~NYVTkRQSLKLLg 236 (247)
+..++ ...+-.+++.+..++=.|..-|..++..+.... +++.+....- ..+.+.|.-+|.+++..||
T Consensus 92 ~~~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----------~~~~ll~~l~-~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 92 FSNYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYAST----------SLEAQQESIV-ESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp GHHHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----------CHHHHHHHHH-HHTTCSCHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHH-HHHcCCChHHHHHHHHHHH
Confidence 01100 112334455556677778888888888776532 4677787774 7889999999999999999
Q ss_pred Hhhhhh
Q 025870 237 LCASQW 242 (247)
Q Consensus 237 el~s~~ 242 (247)
.+++.+
T Consensus 159 ~~l~~~ 164 (242)
T 2qk2_A 159 RALTRT 164 (242)
T ss_dssp HHHTTC
T ss_pred HHHHHc
Confidence 988654
No 76
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=22.27 E-value=2e+02 Score=28.16 Aligned_cols=75 Identities=16% Similarity=0.334 Sum_probs=46.4
Q ss_pred ChhhhHhHHHHHHHHHHHHHHHHHHhcchh-hHhhhh----hccCCCchhhhhhHHHHHHHHhhCh--HHHHHHHHhcHH
Q 025870 137 NTDMALHYGAMLRECIRHQSVARYVLESQH-MKKFFD----YIQLPNFDIAADAAATFKELLTRHK--STVAEFLSKNYD 209 (247)
Q Consensus 137 ~~diAl~~G~mLREcik~e~lak~iL~~~~-f~~fF~----yv~~~~FeiaSDAf~tfkelLtrHk--~lvaefL~~Nyd 209 (247)
+||+.-.+=.+|..++++-. ..++.++. |..+++ -+..+..+++.=|+..+.++++..+ ..+.+|+...+.
T Consensus 786 ~pd~~~~~f~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 863 (963)
T 2x19_B 786 HPDIVDSFMQLLAQALKRKP--DLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGR 863 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHCG--GGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHH
T ss_pred CchHHHHHHHHHHHHHHhCc--HHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 45555555444544444322 12334444 555544 3467888899999999999998654 566678777766
Q ss_pred HHHH
Q 025870 210 WFFA 213 (247)
Q Consensus 210 ~Ff~ 213 (247)
.+..
T Consensus 864 ~l~~ 867 (963)
T 2x19_B 864 MLLI 867 (963)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 77
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=22.02 E-value=1.7e+02 Score=25.56 Aligned_cols=72 Identities=18% Similarity=0.124 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhhc-----------------------c-------
Q 025870 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILY-----------------------G------- 57 (247)
Q Consensus 9 ~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL~-----------------------G------- 57 (247)
|+.-..+|+.+.+.|..++......=.++.++. +++...-.+++..+- |
T Consensus 129 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~ 208 (294)
T 3hh8_A 129 LENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYIW 208 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCceeecc
Confidence 344567899999999999854321111222222 233333233332221 1
Q ss_pred --CCCCCCChHHHHHHHHHHHhhch
Q 025870 58 --NSESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 58 --~~e~ep~~e~~~qLa~ei~~~dl 80 (247)
.++.||++..+++|.+.+-..+.
T Consensus 209 ~~~~~~eps~~~l~~l~~~ik~~~v 233 (294)
T 3hh8_A 209 EINTEEEGTPDQISSLIEKLKVIKP 233 (294)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSCC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 24678999999999888877664
No 78
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=21.76 E-value=1.9e+02 Score=25.55 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=41.8
Q ss_pred CCChHHHHHHHHHHHHHhhcccCchhhhHHHHH-HHHHHHHHHHHhhh-----------------------c--------
Q 025870 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSIL-----------------------Y-------- 56 (247)
Q Consensus 9 ~KtP~elVr~l~e~l~~L~~~~~~~~~k~~~k~-ee~sK~L~~mK~iL-----------------------~-------- 56 (247)
|+.-..+|+.+.+.|.+++......=.++.++. +++.+.-.+++..+ |
T Consensus 136 p~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~~~ 215 (307)
T 3ujp_A 136 PRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYMW 215 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEEee
Confidence 445567899999999999854311111222222 22222222222222 1
Q ss_pred c-CCCCCCChHHHHHHHHHHHhhch
Q 025870 57 G-NSESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 57 G-~~e~ep~~e~~~qLa~ei~~~dl 80 (247)
| ..+.||++..+++|.+.+-..+.
T Consensus 216 ~i~~~~ePs~~~l~~l~~~ik~~~v 240 (307)
T 3ujp_A 216 PINAEQQFTPKQVQTVIEEVKTNNV 240 (307)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHTTTC
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcCC
Confidence 2 35678999999999988887764
No 79
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=21.56 E-value=1.9e+02 Score=25.54 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=17.8
Q ss_pred CCCCCChHHHHHHHHHHHhhch
Q 025870 59 SESEPVSEACAQLTAEFFRENT 80 (247)
Q Consensus 59 ~e~ep~~e~~~qLa~ei~~~dl 80 (247)
++.||++..+++|.+.+-..+.
T Consensus 226 ~~~eps~~~l~~l~~~ik~~~v 247 (313)
T 1toa_A 226 TASEASAHDMQELAAFIAQRKL 247 (313)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHcCC
Confidence 4678999999999888877653
No 80
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=21.41 E-value=87 Score=24.30 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCCChHHHHHHHH--------HHHHHhhcccCchhhhHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc
Q 025870 8 KPRTPVDIVRQTR--------DLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN 79 (247)
Q Consensus 8 ~~KtP~elVr~l~--------e~l~~L~~~~~~~~~k~~~k~ee~sK~L~~mK~iL~G~~e~ep~~e~~~qLa~ei~~~d 79 (247)
++-|-.|+++.+. -.+..++.+.. ... .-+....+++++.-=-..|.|+...++..+ -.++..++ +..
T Consensus 25 ~~~T~~elA~~~~~~G~~is~s~is~~E~G~r-~~P-s~~~l~~iA~~f~V~~~yl~~~~~~~~~~~-el~ll~~~-rd~ 100 (135)
T 3r1f_A 25 GPHTSAEVIAALKAEGITMSAPYLSQLRSGNR-TNP-SGATMAALANFFRIKAAYFTDDEYYEKLDK-ELQWLCTM-RDD 100 (135)
T ss_dssp CCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSS-CCC-CHHHHHHHHHHHTSCTHHHHCHHHHHHHHH-HHHHHHHT-TST
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHHHCCCC-CCC-CHHHHHHHHHHhCCCHHHHcCCcchhhHHH-HHHHHHHH-hhh
Confidence 4567888888775 55777765321 011 113346777777755566665432211111 11222222 222
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhh
Q 025870 80 TLRLLITCLPKLNLEARKDATQVVANLQR 108 (247)
Q Consensus 80 ll~~Li~~L~~L~FE~RKdv~~If~~llr 108 (247)
-+..+......|+=|.++.+..+...+.+
T Consensus 101 ~v~~l~~r~~~Ls~e~~~~l~~ii~~l~~ 129 (135)
T 3r1f_A 101 GVRRIAQRAHGLPSAAQQKVLDRIDELRR 129 (135)
T ss_dssp THHHHHHHHTSCCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33444555567888888888888877654
No 81
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=20.05 E-value=1e+02 Score=28.69 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=33.5
Q ss_pred hhcCHHHHHHHHH-hccChhhhH-hHHHHHHHHHHHHHHHHHH
Q 025870 121 LEANIDLLDILIA-GYENTDMAL-HYGAMLRECIRHQSVARYV 161 (247)
Q Consensus 121 l~~~peil~~L~~-gY~~~diAl-~~G~mLREcik~e~lak~i 161 (247)
...-|.++..|++ ||+..||+- ..|+.||-.-+.|..|+-+
T Consensus 334 vs~~p~L~~~L~~rG~se~di~ki~g~N~lRvl~~ve~~a~~~ 376 (400)
T 3id7_A 334 VSGYPNLIAELLDRGWSQSDLAKLTWKNAVRVLDAAEDVSRGL 376 (400)
T ss_dssp TTCHHHHHHHHHHTTCCHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3446999999986 999999985 5677899888899998864
Done!