Query 025871
Match_columns 247
No_of_seqs 214 out of 730
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 10:28:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3584 cAMP response element 99.5 7.8E-14 1.7E-18 128.7 6.5 60 187-246 284-343 (348)
2 smart00338 BRLZ basic region l 99.3 1.2E-11 2.7E-16 90.0 7.5 54 192-245 3-56 (65)
3 KOG4005 Transcription factor X 99.2 2.8E-11 6.1E-16 109.5 8.7 66 178-243 53-118 (292)
4 PF00170 bZIP_1: bZIP transcri 99.2 5.5E-11 1.2E-15 86.4 7.4 54 192-245 3-56 (64)
5 PF07716 bZIP_2: Basic region 99.1 2.4E-10 5.1E-15 80.9 7.8 53 191-244 2-54 (54)
6 KOG4343 bZIP transcription fac 99.0 9.1E-10 2E-14 108.6 7.5 57 188-244 275-331 (655)
7 KOG0709 CREB/ATF family transc 98.7 1.7E-08 3.8E-13 98.2 5.3 55 189-243 246-300 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.2 1.5E-07 3.3E-12 73.2 -2.3 57 188-244 24-80 (92)
9 KOG0837 Transcriptional activa 97.6 0.00016 3.5E-09 66.7 7.1 50 194-243 206-255 (279)
10 KOG3119 Basic region leucine z 97.6 0.00018 4E-09 66.0 6.9 59 186-244 186-244 (269)
11 KOG4571 Activating transcripti 97.2 0.001 2.2E-08 62.2 7.3 54 191-244 224-277 (294)
12 KOG4196 bZIP transcription fac 97.2 0.0021 4.5E-08 54.0 8.4 55 191-245 50-111 (135)
13 KOG3863 bZIP transcription fac 96.5 0.0023 4.9E-08 64.9 4.0 47 196-242 492-538 (604)
14 KOG1414 Transcriptional activa 92.3 0.0038 8.2E-08 60.2 -6.9 57 187-243 147-207 (395)
15 KOG1414 Transcriptional activa 91.5 0.027 5.8E-07 54.4 -2.2 60 186-245 277-337 (395)
16 KOG1318 Helix loop helix trans 87.0 2 4.4E-05 42.3 7.0 59 186-245 235-320 (411)
17 PRK00888 ftsB cell division pr 86.1 1.9 4.2E-05 34.5 5.4 33 211-243 30-62 (105)
18 PF04977 DivIC: Septum formati 81.3 5 0.00011 29.1 5.5 31 211-241 20-50 (80)
19 KOG3119 Basic region leucine z 78.0 11 0.00025 34.7 7.9 56 190-245 194-252 (269)
20 PHA03162 hypothetical protein; 77.9 1.6 3.6E-05 36.9 2.2 29 211-239 9-37 (135)
21 PF01166 TSC22: TSC-22/dip/bun 76.3 4.8 0.0001 29.7 4.0 21 216-236 22-42 (59)
22 PF03980 Nnf1: Nnf1 ; InterPr 76.2 5.9 0.00013 31.2 4.9 33 212-244 77-109 (109)
23 PF06156 DUF972: Protein of un 75.7 5.3 0.00012 32.3 4.5 30 215-244 22-51 (107)
24 PF10226 DUF2216: Uncharacteri 75.7 20 0.00043 32.2 8.4 57 191-247 20-80 (195)
25 PHA03155 hypothetical protein; 74.5 4.2 9.1E-05 33.7 3.6 25 216-240 9-33 (115)
26 PF06005 DUF904: Protein of un 74.3 7.9 0.00017 29.3 4.8 29 216-244 26-54 (72)
27 TIGR02209 ftsL_broad cell divi 73.6 14 0.0003 27.4 6.1 32 212-243 28-59 (85)
28 PF13863 DUF4200: Domain of un 73.5 32 0.00069 27.3 8.5 52 191-242 57-108 (126)
29 PF08172 CASP_C: CASP C termin 73.2 7.8 0.00017 35.6 5.5 27 215-241 107-133 (248)
30 TIGR02894 DNA_bind_RsfA transc 72.6 13 0.00027 32.5 6.3 35 211-245 107-141 (161)
31 PRK13169 DNA replication intia 72.5 7.2 0.00016 31.9 4.6 29 216-244 23-51 (110)
32 PRK10884 SH3 domain-containing 72.2 27 0.00058 31.3 8.5 32 213-244 123-154 (206)
33 PF00170 bZIP_1: bZIP transcri 71.3 34 0.00075 24.4 8.6 55 190-244 5-62 (64)
34 PF02183 HALZ: Homeobox associ 68.1 15 0.00033 25.4 4.7 27 218-244 15-41 (45)
35 PF05529 Bap31: B-cell recepto 66.3 30 0.00065 29.7 7.4 35 211-245 157-191 (192)
36 PF05377 FlaC_arch: Flagella a 66.2 10 0.00022 27.6 3.7 23 220-242 12-34 (55)
37 smart00338 BRLZ basic region l 65.5 47 0.001 23.7 8.4 56 190-245 5-63 (65)
38 PF01166 TSC22: TSC-22/dip/bun 65.1 15 0.00033 27.1 4.5 29 216-244 15-43 (59)
39 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.9 47 0.001 27.2 7.8 47 195-241 85-131 (132)
40 smart00340 HALZ homeobox assoc 62.1 15 0.00033 25.6 3.8 25 220-244 10-34 (44)
41 PF04999 FtsL: Cell division p 60.0 35 0.00075 26.1 6.0 28 216-243 43-70 (97)
42 PF12808 Mto2_bdg: Micro-tubul 59.4 14 0.00031 26.5 3.4 26 218-243 25-50 (52)
43 PF12709 Kinetocho_Slk19: Cent 58.9 23 0.0005 28.0 4.8 28 214-241 48-75 (87)
44 KOG4343 bZIP transcription fac 58.4 43 0.00093 34.6 7.8 57 188-244 279-338 (655)
45 PF06005 DUF904: Protein of un 57.9 25 0.00055 26.5 4.7 24 219-242 22-45 (72)
46 PF12999 PRKCSH-like: Glucosid 56.2 90 0.002 27.6 8.6 35 210-244 141-175 (176)
47 PF07716 bZIP_2: Basic region 55.7 67 0.0014 22.3 8.0 47 191-237 5-54 (54)
48 PF07047 OPA3: Optic atrophy 3 55.5 33 0.00071 28.4 5.5 37 193-235 96-132 (134)
49 PF12709 Kinetocho_Slk19: Cent 55.0 35 0.00076 27.0 5.3 33 212-244 39-71 (87)
50 KOG4797 Transcriptional regula 54.9 18 0.00038 30.0 3.7 24 213-236 72-95 (123)
51 PRK00888 ftsB cell division pr 54.3 25 0.00054 28.1 4.5 19 211-229 44-62 (105)
52 PF01486 K-box: K-box region; 53.3 33 0.0007 26.6 4.9 25 215-239 75-99 (100)
53 KOG4571 Activating transcripti 52.2 1.2E+02 0.0027 28.9 9.3 36 210-245 247-285 (294)
54 PF05377 FlaC_arch: Flagella a 51.0 39 0.00084 24.6 4.6 27 217-243 2-28 (55)
55 KOG4005 Transcription factor X 48.8 1E+02 0.0022 29.0 8.0 58 186-243 65-125 (292)
56 PRK13169 DNA replication intia 48.3 38 0.00082 27.7 4.7 30 212-241 26-55 (110)
57 KOG3335 Predicted coiled-coil 47.9 61 0.0013 28.9 6.2 26 216-241 107-132 (181)
58 TIGR02449 conserved hypothetic 47.5 46 0.00099 24.9 4.6 16 226-241 18-33 (65)
59 PF10473 CENP-F_leu_zip: Leuci 46.2 1.4E+02 0.003 25.4 7.9 52 192-243 29-80 (140)
60 KOG4797 Transcriptional regula 46.1 46 0.00099 27.7 4.8 30 214-243 66-95 (123)
61 PF06156 DUF972: Protein of un 45.9 44 0.00095 27.0 4.7 31 213-243 27-57 (107)
62 PF07334 IFP_35_N: Interferon- 45.7 39 0.00084 26.1 4.1 29 217-245 2-30 (76)
63 PRK09413 IS2 repressor TnpA; R 45.5 39 0.00084 27.1 4.3 24 217-240 80-103 (121)
64 PF11559 ADIP: Afadin- and alp 45.3 1.4E+02 0.003 24.6 7.7 45 198-242 49-93 (151)
65 PF05103 DivIVA: DivIVA protei 45.1 22 0.00048 28.2 2.9 28 215-242 25-52 (131)
66 PRK11239 hypothetical protein; 44.7 33 0.00072 31.3 4.2 29 217-245 185-213 (215)
67 PF14077 WD40_alt: Alternative 44.6 19 0.00041 25.5 2.1 21 215-235 18-38 (48)
68 PF06698 DUF1192: Protein of u 44.6 50 0.0011 24.3 4.3 25 217-241 23-47 (59)
69 PF13851 GAS: Growth-arrest sp 44.5 1.6E+02 0.0035 26.0 8.5 49 195-243 73-121 (201)
70 cd07429 Cby_like Chibby, a nuc 44.3 40 0.00087 27.6 4.2 22 224-245 81-102 (108)
71 KOG0709 CREB/ATF family transc 44.1 50 0.0011 33.3 5.6 61 182-243 244-314 (472)
72 PF07558 Shugoshin_N: Shugoshi 44.0 29 0.00063 24.0 2.9 42 197-239 4-45 (46)
73 PF04977 DivIC: Septum formati 43.8 52 0.0011 23.6 4.5 21 214-234 30-50 (80)
74 PF06785 UPF0242: Uncharacteri 43.2 99 0.0021 30.4 7.3 35 211-245 123-157 (401)
75 PF04568 IATP: Mitochondrial A 41.6 1.3E+02 0.0029 24.2 6.8 44 200-243 54-97 (100)
76 PF07047 OPA3: Optic atrophy 3 40.7 70 0.0015 26.5 5.3 36 208-243 98-133 (134)
77 PRK13922 rod shape-determining 38.7 1.5E+02 0.0032 26.8 7.5 13 217-229 78-90 (276)
78 cd07596 BAR_SNX The Bin/Amphip 38.7 2.2E+02 0.0049 23.7 8.2 15 216-230 146-160 (218)
79 PF11365 DUF3166: Protein of u 38.5 74 0.0016 25.5 4.8 27 219-245 19-45 (96)
80 PF10205 KLRAQ: Predicted coil 38.4 84 0.0018 25.5 5.2 33 213-245 38-70 (102)
81 PF14645 Chibby: Chibby family 38.3 54 0.0012 26.8 4.2 24 221-244 77-100 (116)
82 PF13747 DUF4164: Domain of un 37.2 2E+02 0.0043 22.4 7.6 48 193-240 10-57 (89)
83 PF10186 Atg14: UV radiation r 37.1 2.2E+02 0.0048 25.1 8.3 26 214-239 69-94 (302)
84 PF10224 DUF2205: Predicted co 36.8 2E+02 0.0043 22.3 8.8 27 216-242 31-57 (80)
85 TIGR02449 conserved hypothetic 36.8 71 0.0015 23.9 4.2 20 220-239 26-45 (65)
86 PRK14127 cell division protein 36.7 72 0.0016 26.0 4.6 26 218-243 40-65 (109)
87 COG4467 Regulator of replicati 36.5 64 0.0014 26.7 4.3 30 216-245 23-52 (114)
88 PF14197 Cep57_CLD_2: Centroso 36.2 1.8E+02 0.0039 21.7 6.7 38 198-242 30-67 (69)
89 PRK10884 SH3 domain-containing 36.0 2.1E+02 0.0045 25.6 7.9 25 217-241 134-158 (206)
90 PF10224 DUF2205: Predicted co 35.9 89 0.0019 24.2 4.8 46 198-243 20-65 (80)
91 PRK14127 cell division protein 35.3 70 0.0015 26.1 4.3 11 223-233 52-62 (109)
92 TIGR02894 DNA_bind_RsfA transc 34.9 76 0.0016 27.8 4.7 21 217-237 120-140 (161)
93 COG5562 Phage envelope protein 34.8 19 0.00041 30.7 1.0 18 126-143 86-106 (137)
94 PRK13923 putative spore coat p 33.7 77 0.0017 27.9 4.6 32 214-245 110-141 (170)
95 PF02183 HALZ: Homeobox associ 33.4 91 0.002 21.5 4.1 26 219-244 9-34 (45)
96 COG2433 Uncharacterized conser 33.2 1.2E+02 0.0026 31.9 6.5 30 214-243 435-464 (652)
97 KOG2483 Upstream transcription 32.5 82 0.0018 28.9 4.8 35 211-245 101-142 (232)
98 PF14362 DUF4407: Domain of un 32.4 2.5E+02 0.0054 25.6 8.0 32 214-245 134-165 (301)
99 PF02403 Seryl_tRNA_N: Seryl-t 32.4 78 0.0017 24.5 4.1 47 198-244 49-96 (108)
100 PF07407 Seadorna_VP6: Seadorn 32.3 59 0.0013 31.9 3.9 24 220-243 37-60 (420)
101 PRK11637 AmiB activator; Provi 32.0 2.7E+02 0.0058 26.9 8.5 26 216-241 97-122 (428)
102 KOG0977 Nuclear envelope prote 32.0 1E+02 0.0022 31.8 5.8 23 222-244 56-78 (546)
103 PF05266 DUF724: Protein of un 32.0 2.2E+02 0.0047 25.2 7.2 19 212-230 128-146 (190)
104 PF06305 DUF1049: Protein of u 31.5 69 0.0015 22.6 3.4 7 225-231 58-64 (68)
105 PF08563 P53_TAD: P53 transact 31.0 30 0.00065 21.5 1.2 17 89-105 6-22 (25)
106 PF14197 Cep57_CLD_2: Centroso 30.9 1.9E+02 0.0042 21.5 5.8 23 222-244 40-62 (69)
107 COG5509 Uncharacterized small 30.6 97 0.0021 23.2 4.0 25 217-241 27-51 (65)
108 COG1382 GimC Prefoldin, chaper 30.3 1.2E+02 0.0025 25.3 4.9 25 219-243 81-105 (119)
109 TIGR00219 mreC rod shape-deter 30.2 55 0.0012 30.3 3.4 13 227-239 96-108 (283)
110 PRK10803 tol-pal system protei 30.2 2.4E+02 0.0053 25.8 7.5 31 213-243 59-89 (263)
111 PF11500 Cut12: Spindle pole b 30.2 3.6E+02 0.0079 23.3 8.6 54 190-243 80-133 (152)
112 KOG1103 Predicted coiled-coil 29.8 1.5E+02 0.0032 29.6 6.2 49 189-240 109-157 (561)
113 PRK09413 IS2 repressor TnpA; R 29.8 1.1E+02 0.0023 24.5 4.6 27 217-243 73-99 (121)
114 COG3879 Uncharacterized protei 29.5 2.8E+02 0.0061 25.9 7.7 41 203-243 59-103 (247)
115 PF09726 Macoilin: Transmembra 29.5 1.7E+02 0.0037 30.9 7.0 23 220-242 543-565 (697)
116 PF00038 Filament: Intermediat 29.3 3.9E+02 0.0085 24.2 8.7 34 212-245 220-253 (312)
117 PF06785 UPF0242: Uncharacteri 29.2 80 0.0017 31.0 4.3 26 211-236 197-222 (401)
118 KOG3650 Predicted coiled-coil 29.1 80 0.0017 26.0 3.6 29 213-241 68-96 (120)
119 PF12325 TMF_TATA_bd: TATA ele 29.0 3.3E+02 0.0072 22.4 7.7 17 229-245 96-112 (120)
120 PF14775 NYD-SP28_assoc: Sperm 29.0 89 0.0019 22.7 3.6 20 219-238 37-56 (60)
121 TIGR01834 PHA_synth_III_E poly 28.8 95 0.0021 29.9 4.7 30 215-244 289-318 (320)
122 PF04340 DUF484: Protein of un 28.7 79 0.0017 27.8 4.0 23 219-241 58-83 (225)
123 PF12711 Kinesin-relat_1: Kine 28.1 95 0.0021 24.5 3.8 23 223-245 45-67 (86)
124 PF10883 DUF2681: Protein of u 27.7 78 0.0017 25.0 3.3 15 224-238 32-46 (87)
125 PRK13922 rod shape-determining 27.6 2E+02 0.0043 26.0 6.4 28 211-238 79-109 (276)
126 KOG3433 Protein involved in me 27.6 3E+02 0.0064 25.0 7.2 45 198-242 99-143 (203)
127 PF08961 DUF1875: Domain of un 27.3 21 0.00045 32.9 0.0 28 217-244 131-158 (243)
128 KOG2829 E2F-like protein [Tran 27.1 1.6E+02 0.0035 28.3 5.8 19 211-229 149-167 (326)
129 cd08531 SAM_PNT-ERG_FLI-1 Ster 26.6 34 0.00074 26.0 1.1 17 125-141 41-57 (75)
130 PF09340 NuA4: Histone acetylt 26.6 1.1E+02 0.0024 23.4 3.9 30 217-246 4-33 (80)
131 COG1792 MreC Cell shape-determ 26.6 1.1E+02 0.0023 28.6 4.6 27 214-240 82-108 (284)
132 KOG0561 bHLH transcription fac 26.6 79 0.0017 30.7 3.7 40 203-242 93-132 (373)
133 PF08232 Striatin: Striatin fa 26.5 3.7E+02 0.0081 22.3 7.4 47 195-241 12-58 (134)
134 PF11932 DUF3450: Protein of u 26.4 4.7E+02 0.01 23.4 8.6 26 216-241 71-96 (251)
135 PF11382 DUF3186: Protein of u 26.2 82 0.0018 29.5 3.8 27 217-243 34-60 (308)
136 PRK13729 conjugal transfer pil 26.0 3E+02 0.0064 28.0 7.8 29 215-243 97-125 (475)
137 PF09304 Cortex-I_coil: Cortex 25.7 3.8E+02 0.0082 22.0 8.0 50 195-244 17-66 (107)
138 cd08533 SAM_PNT-ETS-1,2 Steril 25.7 37 0.0008 25.6 1.1 15 126-140 40-54 (71)
139 COG2919 Septum formation initi 25.5 1.3E+02 0.0028 24.3 4.4 25 219-243 61-85 (117)
140 PF10482 CtIP_N: Tumour-suppre 25.3 1.4E+02 0.0031 24.9 4.5 29 210-238 91-119 (120)
141 PRK14160 heat shock protein Gr 25.3 1E+02 0.0022 27.8 4.1 27 219-245 58-84 (211)
142 COG4026 Uncharacterized protei 25.2 1.3E+02 0.0028 28.2 4.7 45 199-243 147-191 (290)
143 PF13805 Pil1: Eisosome compon 25.2 1.6E+02 0.0035 27.7 5.5 47 196-242 146-192 (271)
144 PF14257 DUF4349: Domain of un 25.2 3E+02 0.0066 24.6 7.1 43 202-244 149-191 (262)
145 PRK15422 septal ring assembly 25.1 1.7E+02 0.0036 22.9 4.6 19 219-237 22-40 (79)
146 KOG0163 Myosin class VI heavy 25.1 2.6E+02 0.0056 30.7 7.3 31 201-231 962-993 (1259)
147 PF15369 KIAA1328: Uncharacter 24.9 3.7E+02 0.008 26.1 7.8 34 212-245 30-63 (328)
148 PF10211 Ax_dynein_light: Axon 24.4 3.8E+02 0.0082 23.4 7.4 22 218-239 166-187 (189)
149 TIGR02209 ftsL_broad cell divi 24.4 1.9E+02 0.0041 21.2 4.8 17 217-233 40-56 (85)
150 COG4026 Uncharacterized protei 24.2 4.2E+02 0.0092 24.9 7.8 29 214-242 169-197 (290)
151 KOG0288 WD40 repeat protein Ti 24.1 3.7E+02 0.0081 27.1 7.9 25 214-238 47-71 (459)
152 PF11559 ADIP: Afadin- and alp 24.0 2.2E+02 0.0048 23.4 5.6 43 195-237 60-102 (151)
153 smart00243 GAS2 Growth-Arrest- 23.9 36 0.00079 26.1 0.8 12 127-138 55-66 (73)
154 PF01920 Prefoldin_2: Prefoldi 23.9 2E+02 0.0044 21.5 5.0 20 221-240 75-94 (106)
155 PF02370 M: M protein repeat; 23.9 1.7E+02 0.0037 17.5 3.6 17 218-234 4-20 (21)
156 PF10883 DUF2681: Protein of u 23.7 1.7E+02 0.0036 23.1 4.5 10 230-239 54-63 (87)
157 cd08540 SAM_PNT-ERG Sterile al 23.6 42 0.00091 25.6 1.1 17 126-142 42-58 (75)
158 COG2433 Uncharacterized conser 23.5 1.3E+02 0.0028 31.6 4.8 15 49-63 37-51 (652)
159 PF12329 TMF_DNA_bd: TATA elem 23.4 2E+02 0.0043 21.6 4.7 32 214-245 39-70 (74)
160 PF08317 Spc7: Spc7 kinetochor 23.4 3.4E+02 0.0073 25.5 7.3 13 97-109 76-88 (325)
161 PF04849 HAP1_N: HAP1 N-termin 23.3 1.2E+02 0.0025 29.1 4.2 26 217-242 162-187 (306)
162 KOG1029 Endocytic adaptor prot 23.2 3.2E+02 0.007 30.0 7.6 9 127-135 244-252 (1118)
163 smart00251 SAM_PNT SAM / Point 23.1 40 0.00087 25.8 0.9 54 86-139 10-66 (82)
164 COG4942 Membrane-bound metallo 22.8 4.7E+02 0.01 26.2 8.3 46 194-239 38-83 (420)
165 KOG1853 LIS1-interacting prote 22.5 1.3E+02 0.0029 28.6 4.3 16 225-240 94-109 (333)
166 cd08203 SAM_PNT Sterile alpha 22.5 44 0.00095 24.4 1.0 16 125-140 37-52 (66)
167 PRK14474 F0F1 ATP synthase sub 22.4 5.8E+02 0.013 23.2 8.5 44 188-231 30-73 (250)
168 PF07989 Microtub_assoc: Micro 22.3 1.4E+02 0.0031 22.6 3.8 14 222-235 7-20 (75)
169 COG1382 GimC Prefoldin, chaper 22.3 1.9E+02 0.0041 24.1 4.7 18 220-237 75-92 (119)
170 PRK05431 seryl-tRNA synthetase 22.3 2E+02 0.0043 28.2 5.7 28 217-244 68-95 (425)
171 PF10211 Ax_dynein_light: Axon 22.2 2.7E+02 0.0059 24.3 6.0 23 219-241 124-146 (189)
172 PRK06569 F0F1 ATP synthase sub 21.9 5.2E+02 0.011 22.3 8.7 33 190-222 37-69 (155)
173 PF02344 Myc-LZ: Myc leucine z 21.7 2.5E+02 0.0053 18.5 4.7 26 219-244 5-30 (32)
174 PF14662 CCDC155: Coiled-coil 21.7 2.7E+02 0.0059 25.1 6.0 28 218-245 98-125 (193)
175 cd08534 SAM_PNT-GABP-alpha Ste 21.6 71 0.0015 25.1 2.0 56 85-140 11-69 (89)
176 PF07106 TBPIP: Tat binding pr 21.4 3.5E+02 0.0076 22.7 6.4 34 210-243 104-137 (169)
177 cd08542 SAM_PNT-ETS-1 Sterile 21.3 85 0.0018 24.8 2.4 56 85-140 11-69 (88)
178 KOG1962 B-cell receptor-associ 21.1 3.4E+02 0.0073 24.8 6.5 8 100-107 61-68 (216)
179 COG3132 Uncharacterized protei 21.0 1.3E+02 0.0028 27.2 3.7 25 218-242 188-212 (215)
180 PF08826 DMPK_coil: DMPK coile 21.0 3.5E+02 0.0076 19.9 8.8 29 215-243 32-60 (61)
181 PRK11546 zraP zinc resistance 20.7 5.4E+02 0.012 22.0 8.4 54 191-244 46-111 (143)
182 cd08757 SAM_PNT_ESE Sterile al 20.7 50 0.0011 24.4 1.0 16 125-140 39-54 (68)
183 PRK11637 AmiB activator; Provi 20.7 5.9E+02 0.013 24.6 8.6 20 223-242 97-116 (428)
184 PRK15422 septal ring assembly 20.4 2.4E+02 0.0051 22.1 4.6 12 227-238 51-62 (79)
185 PF04728 LPP: Lipoprotein leuc 20.4 2.9E+02 0.0062 20.2 4.8 21 220-240 15-35 (56)
186 PF13815 Dzip-like_N: Iguana/D 20.1 2.3E+02 0.005 22.7 4.8 7 130-136 31-37 (118)
187 PF05600 DUF773: Protein of un 20.1 5E+02 0.011 26.3 8.1 54 192-245 441-498 (507)
No 1
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.46 E-value=7.8e-14 Score=128.68 Aligned_cols=60 Identities=30% Similarity=0.431 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 187 ~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
..|+...||+-|++||||+|+.||+|||+|++|||.+|+.||.+|..|.+|+..|++.||
T Consensus 284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 355667789999999999999999999999999999999999999999999999999999
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.28 E-value=1.2e-11 Score=89.97 Aligned_cols=54 Identities=50% Similarity=0.601 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 192 ~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
++|+.+|+++||+||++||.||++|+.+||.++..|+.+|..|..++..|..++
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999887764
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.23 E-value=2.8e-11 Score=109.48 Aligned_cols=66 Identities=35% Similarity=0.427 Sum_probs=62.7
Q ss_pred CCCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 178 TPRRKRDDNAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 178 ~~grkR~~~~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.+.|||.+..|...+||-+||++|||.+|+-+|.|||+++.++|.++..|.+||..|..+++.|+.
T Consensus 53 ~~~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 53 QPKRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred chHHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999999999999999999999999999999988875
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.20 E-value=5.5e-11 Score=86.39 Aligned_cols=54 Identities=46% Similarity=0.612 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 192 ~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
..++.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..|..++
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999998765
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.14 E-value=2.4e-10 Score=80.90 Aligned_cols=53 Identities=43% Similarity=0.597 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.++++.||. +||+||++||.||++++.+|+.++..|+.+|..|..+++.|..+
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356778887 99999999999999999999999999999999999999998753
No 6
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=98.98 E-value=9.1e-10 Score=108.61 Aligned_cols=57 Identities=37% Similarity=0.483 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.|...-||+.|||||||||..||+|||+|+..||+++..|..||+.|++|+..|+.+
T Consensus 275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~q 331 (655)
T KOG4343|consen 275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQ 331 (655)
T ss_pred cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 455667888899999999999999999999999999999999999999888888764
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.69 E-value=1.7e-08 Score=98.21 Aligned_cols=55 Identities=40% Similarity=0.578 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 189 EKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 189 e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
|+..-||-||+|+|++||+.||+|||+|++.||.+|..-..||.+|++++++|..
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~ 300 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL 300 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh
Confidence 4445578899999999999999999999999999999999999999999888764
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.16 E-value=1.5e-07 Score=73.23 Aligned_cols=57 Identities=26% Similarity=0.313 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.+...-|..||.+|||.+|+.||.||..++.+||.++..|..+...|..++..+..+
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e 80 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE 80 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455788899999999999999999999999999987776555555555554443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.61 E-value=0.00016 Score=66.65 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=42.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
|-.|..++||++|.+||+||-.++..||.+|..|..+|..|-.++..|++
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 34455899999999999999999999999999999888887777766654
No 10
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.57 E-value=0.00018 Score=66.00 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=51.3
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 186 ~~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.+.++.+.+...|..+|-++|+|||.+.+...+++..+|..|++||..|+.++++|+.+
T Consensus 186 ~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 186 SPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred CchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666777899999999999999999999999999999999999999998865
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.22 E-value=0.001 Score=62.19 Aligned_cols=54 Identities=24% Similarity=0.386 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
..++..|..++|+.+|.|=|+||++..+.|+-+...|+.+|.+|+.+..+|-.+
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444457888889999999999999999999999999999999888776543
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.21 E-value=0.0021 Score=53.95 Aligned_cols=55 Identities=31% Similarity=0.431 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Q 025871 191 SIERRLRRKIKNRESAARSRARKQAYHNELVS-------KVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~-------~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.--|..||-+|||==|+-||.|+-..-.+||. +|.+|.+||..+..|+..++..|
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667999999999999999998888886 45566677777777777777665
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.53 E-value=0.0023 Score=64.93 Aligned_cols=47 Identities=30% Similarity=0.421 Sum_probs=42.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 196 ~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
-||+=|||.||++||+||-.-|..||.+|..|.++-++|.+|..++.
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d 538 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELD 538 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999888866554
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=92.32 E-value=0.0038 Score=60.17 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 025871 187 AFEKSIERRLRRKIKNRESAAR---SRARKQAYHNELVSKVSRLE-EENLKLKKEKVRISS 243 (247)
Q Consensus 187 ~~e~~~err~rR~iKNReSA~r---SR~RKqay~~eLE~~v~~Le-~eN~~L~~e~~~L~~ 243 (247)
...+.++|+..|+.+|+.+|++ ||.|++.++.+|+.+++.|+ .+|..|..+++.|.+
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn 207 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN 207 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence 3445678999999999999999 99999999999999999999 777777766665544
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=91.46 E-value=0.027 Score=54.36 Aligned_cols=60 Identities=30% Similarity=0.298 Sum_probs=49.7
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc
Q 025871 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK-KEKVRISSMF 245 (247)
Q Consensus 186 ~~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~-~e~~~L~~~y 245 (247)
...+..++++.|=.++||.||-+||.|||-....|+.+...+..+|..|. .+++.|..+|
T Consensus 277 ~~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~ 337 (395)
T KOG1414|consen 277 TVDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEV 337 (395)
T ss_pred ccCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHH
Confidence 44556677786669999999999999999999999999999998888888 6666666554
No 16
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=87.00 E-value=2 Score=42.30 Aligned_cols=59 Identities=25% Similarity=0.302 Sum_probs=42.8
Q ss_pred chhhhHHHHHHHHHHHhHH-------------------------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 186 NAFEKSIERRLRRKIKNRE-------------------------SAARSR--ARKQAYHNELVSKVSRLEEENLKLKKEK 238 (247)
Q Consensus 186 ~~~e~~~err~rR~iKNRe-------------------------SA~rSR--~RKqay~~eLE~~v~~Le~eN~~L~~e~ 238 (247)
+.| .++|||+|-.|.+|. |+-.-| +++.+++.|++.+-..|+..|..|..++
T Consensus 235 d~H-NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~ri 313 (411)
T KOG1318|consen 235 DNH-NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRI 313 (411)
T ss_pred hhh-hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHH
Confidence 444 456788887888774 222223 4455667788888889999999999999
Q ss_pred HHHHhcc
Q 025871 239 VRISSMF 245 (247)
Q Consensus 239 ~~L~~~y 245 (247)
++|+++.
T Consensus 314 eeLk~~~ 320 (411)
T KOG1318|consen 314 EELKSEA 320 (411)
T ss_pred HHHHHHH
Confidence 9998764
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.09 E-value=1.9 Score=34.51 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
...++.+.+++.+++.|+.+|..|+.+++.|++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456677788999999999999999999999977
No 18
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.26 E-value=5 Score=29.07 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
...++.+.+|+.+++.|+.+|..|+.+++.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456678899999999999999999999988
No 19
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=78.00 E-value=11 Score=34.70 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=38.8
Q ss_pred hHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 190 KSIERRLRRK---IKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 190 ~~~err~rR~---iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+--+||.|-. .|-|.+++.--..-+.++..||.+-+.|+.++..|++++..|+..|
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543 3334444444455566788999999999999999999999888765
No 20
>PHA03162 hypothetical protein; Provisional
Probab=77.88 E-value=1.6 Score=36.87 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
-+++.-+++|++++.+|+-||..|++++.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999984
No 21
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=76.34 E-value=4.8 Score=29.70 Aligned_cols=21 Identities=48% Similarity=0.447 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKK 236 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~ 236 (247)
.+.+|+.++.+|+.||..|+.
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666666655554
No 22
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=76.17 E-value=5.9 Score=31.18 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.|+.++..|...+..++.+|..|..++..++.+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 367788899999999999999999999988753
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.72 E-value=5.3 Score=32.31 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
+.+.+|...+..|.+||..|+.|++.|+++
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777664
No 24
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=75.71 E-value=20 Score=32.24 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 025871 191 SIERRLRRKIKNRESAARSRARKQA----YHNELVSKVSRLEEENLKLKKEKVRISSMFLV 247 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RKqa----y~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~~ 247 (247)
+.-+|+||-...+.++-.-+-+=-. ++...=.+|..|++.|++|..++++|++.+|.
T Consensus 20 el~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCF 80 (195)
T PF10226_consen 20 ELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCF 80 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3457888888887777655533222 34444467889999999999999999998874
No 25
>PHA03155 hypothetical protein; Provisional
Probab=74.46 E-value=4.2 Score=33.65 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~ 240 (247)
-+++|++++.+|+-||..|++++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998743
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.33 E-value=7.9 Score=29.28 Aligned_cols=29 Identities=34% Similarity=0.414 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.+.+|..+...|..+|..|+.+++.|+++
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666666666554
No 27
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=73.62 E-value=14 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.....+..++.++..++.+|..|+.|++.|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567778899999999999999999988765
No 28
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=73.48 E-value=32 Score=27.25 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
..+.+..|-++.-+.+.+.+..|.+.+..|..++..|..++..|...+..+.
T Consensus 57 en~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 57 ENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777777777888888888999999999999999988887764
No 29
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.19 E-value=7.8 Score=35.58 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
..+..|..+++.|+..|-+|-+++.-|
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555444
No 30
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=72.56 E-value=13 Score=32.53 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.+.+..+.+|..++..|+.+|..|.+++..+.+.|
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888899999999988888888877
No 31
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=72.54 E-value=7.2 Score=31.87 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.+.+|...+..|.+||..|+.|++.|+++
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666665543
No 32
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.20 E-value=27 Score=31.27 Aligned_cols=32 Identities=28% Similarity=0.226 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.+..+.+++..+..|+++|.+|+++++.++++
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666777777777666666543
No 33
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=71.34 E-value=34 Score=24.38 Aligned_cols=55 Identities=31% Similarity=0.283 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 190 KSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 190 ~~~err~rR~iKNReSA~rSR~RK---qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
+...|+.+-.+.-|.+-.|-...- ...+..|+.+...|..++..|..++..|..+
T Consensus 5 k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 5 KRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666655443 4567788899999999999999999888754
No 34
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.06 E-value=15 Score=25.38 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
+.|..+...|..||..|+.++..|+..
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888889999999999999888764
No 35
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.27 E-value=30 Score=29.72 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.+..+.+++|+.+++..+.+...|++|.+.+.++|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567778888888888899999999999999988
No 36
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.25 E-value=10 Score=27.62 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025871 220 LVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
++..+..++.||+.|+..++.+.
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666555555544
No 37
>smart00338 BRLZ basic region leucin zipper.
Probab=65.46 E-value=47 Score=23.69 Aligned_cols=56 Identities=27% Similarity=0.343 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 190 KSIERRLRRKIKNRESAARSRARKQ---AYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 190 ~~~err~rR~iKNReSA~rSR~RKq---ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+...|+.+-.+.-+.+-.+-+..-. ..+..|+.+...|..++..|..++..|++.+
T Consensus 5 k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 5 KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444443333 4566788888888888888888888888765
No 38
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=65.11 E-value=15 Score=27.12 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.++.|..++..|+..|..|..|+..|+..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778899999999999999999999864
No 39
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.85 E-value=47 Score=27.16 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 195 r~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
.......++.|+..-+..=...+.+++.++..|..+|.-|..+++.+
T Consensus 85 a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455666677776676667778888889999999999999988865
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=62.12 E-value=15 Score=25.55 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 220 LVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
|..=-+.|.+||.+|++++++|+..
T Consensus 10 LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344567999999999999999853
No 41
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=59.95 E-value=35 Score=26.12 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.++.++.+..+|+.||..|+-|++.|.+
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3788999999999999999999988865
No 42
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=59.37 E-value=14 Score=26.50 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.....++..|+.||..|+.+++.++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667888999999999999988765
No 43
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=58.86 E-value=23 Score=27.99 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
...+.+|+.++..|..||..|+.+++..
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555443
No 44
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=58.44 E-value=43 Score=34.65 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 188 FEKSIERRLRRKIKNRESAARSRA---RKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~---RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
..+...|..|-+..--.|.++-+. -=.+++++|+.+-++|+.||..|+++++.|-.|
T Consensus 279 v~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 279 VLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 444555555545555555444443 346789999999999999999999999998654
No 45
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.89 E-value=25 Score=26.54 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
-|..+++.|+++|..|..+++.|.
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333444444444444444444443
No 46
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=56.16 E-value=90 Score=27.58 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 210 RARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 210 R~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
=++|++++.+.+.+...++.+..+|+.+++..+.+
T Consensus 141 ~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 141 LKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35577888888888888899999999988887754
No 47
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=55.73 E-value=67 Score=22.29 Aligned_cols=47 Identities=30% Similarity=0.389 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 191 SIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RK---qay~~eLE~~v~~Le~eN~~L~~e 237 (247)
...||.+-.+.-+-+-++-+.+. ...+..|+.+...|..++..|+.|
T Consensus 5 ~~~rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 5 KRERRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33455565555555666665554 467888999999999999999875
No 48
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=55.45 E-value=33 Score=28.43 Aligned_cols=37 Identities=30% Similarity=0.280 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLK 235 (247)
Q Consensus 193 err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~ 235 (247)
-.|..|+.++|+.+ .++.+++|+.++..|+.+.+++.
T Consensus 96 ~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 96 YWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555554444433 33455566666666665555443
No 49
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=55.04 E-value=35 Score=26.98 Aligned_cols=33 Identities=33% Similarity=0.464 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
=|+.|-...+.+|..|+.+|..|.++++.|+.+
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~ 71 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKK 71 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888889999999999999999999998864
No 50
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=54.91 E-value=18 Score=30.04 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKK 236 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~ 236 (247)
=+..+.+|+.++..|+.||.-|+.
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777777777664
No 51
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.35 E-value=25 Score=28.14 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025871 211 ARKQAYHNELVSKVSRLEE 229 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~ 229 (247)
.+.++....|+.++..|+.
T Consensus 44 ~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 44 AKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 4455556666666666654
No 52
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.29 E-value=33 Score=26.65 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
..+..|..++..|.++|..|+.+++
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788888899999999988875
No 53
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=52.17 E-value=1.2e+02 Score=28.90 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=24.9
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 210 RARKQA---YHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 210 R~RKqa---y~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
|+.+.+ .+..||.+-..|+..-.+|.+|+..|+.-+
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 445566777788888888888888877643
No 54
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.00 E-value=39 Score=24.61 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+++||.++..++.....++++++.+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555543
No 55
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=48.77 E-value=1e+02 Score=28.96 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=36.4
Q ss_pred chhhhHHHHHHHHHHHhH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 186 NAFEKSIERRLRRKIKNR--ESAARSRARKQAY-HNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 186 ~~~e~~~err~rR~iKNR--eSA~rSR~RKqay-~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
...||...|++|-+..-- ---++.|.-+-+| +.+|+.+-..|..||..|++.++.|..
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~ 125 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLA 125 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667677777433221 1223345555554 678888888888888888877776654
No 56
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=48.32 E-value=38 Score=27.70 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
.=|+++.+|..+-..|+-||..|++.+.++
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346678899999999999999999999886
No 57
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=47.89 E-value=61 Score=28.88 Aligned_cols=26 Identities=31% Similarity=0.194 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
.+.+|..++..|+.+...+++.+++|
T Consensus 107 e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 107 EIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444
No 58
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=47.53 E-value=46 Score=24.92 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 025871 226 RLEEENLKLKKEKVRI 241 (247)
Q Consensus 226 ~Le~eN~~L~~e~~~L 241 (247)
.|+.||..|+.+++.+
T Consensus 18 ~L~~EN~~Lr~q~~~~ 33 (65)
T TIGR02449 18 RLKSENRLLRAQEKTW 33 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555554444443
No 59
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.17 E-value=1.4e+02 Score=25.39 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 192 ~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.+|-+.....|++.+-+--.-+++.+..|+.++..+..+...|..++..+++
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666778888888777778888888888877766666666666655544
No 60
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=46.05 E-value=46 Score=27.68 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
++.++-|..++..|++.|..|++|+..|+.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888999999999999999998875
No 61
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.87 E-value=44 Score=27.04 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
=|.++.+|..+-..|+-||..|+..+..+..
T Consensus 27 LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 27 LKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778999999999999999999887653
No 62
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=45.67 E-value=39 Score=26.12 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+.+|..+-..|+.+.++|+.+++.++..|
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566666677777777777777766655
No 63
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=45.52 E-value=39 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~ 240 (247)
+.+|+.++.+|+.||.-|++..+-
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777766665543
No 64
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.30 E-value=1.4e+02 Score=24.62 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 198 RKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 198 R~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
|=...|+.......++..-+..|+..+..|+.+++.+.+++..+.
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666666666666666666655555443
No 65
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.12 E-value=22 Score=28.15 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
.|++.|...+..|..+|..|+.++..|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665544
No 66
>PRK11239 hypothetical protein; Provisional
Probab=44.73 E-value=33 Score=31.27 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
...|+.+|..|+.|...|+.+++.|.++|
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35699999999999999999999888765
No 67
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=44.59 E-value=19 Score=25.52 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLK 235 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~ 235 (247)
.++.|||.+|..|++.|..|-
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 456678888888888887664
No 68
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=44.55 E-value=50 Score=24.28 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
+.||+.+++.|+.|..+++.++..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888776654
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=44.52 E-value=1.6e+02 Score=25.97 Aligned_cols=49 Identities=24% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 195 r~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.+++.+++-++-..+=..-++.+..++.++..|+-++..|..+...+..
T Consensus 73 eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ 121 (201)
T PF13851_consen 73 ELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555666666666666666666666555555443
No 70
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=44.34 E-value=40 Score=27.60 Aligned_cols=22 Identities=36% Similarity=0.317 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 025871 224 VSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 224 v~~Le~eN~~L~~e~~~L~~~y 245 (247)
..+|++||.-|+-+++.|..+.
T Consensus 81 ~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 81 NQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888877653
No 71
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=44.13 E-value=50 Score=33.34 Aligned_cols=61 Identities=26% Similarity=0.355 Sum_probs=46.6
Q ss_pred CCccchhhhHHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 182 KRDDNAFEKSIERRLRRKIKNRESAARSRARKQ----------AYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 182 kR~~~~~e~~~err~rR~iKNReSA~rSR~RKq----------ay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
|+.. -..+.+.|+.|.|+.--||-++....=. +.-++|..+|..|+.+|..|..++..|..
T Consensus 244 KaEE-riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 244 KAEE-RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHH-HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4443 3557777888888888888888775543 34578999999999999999999887753
No 72
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=44.00 E-value=29 Score=23.95 Aligned_cols=42 Identities=33% Similarity=0.374 Sum_probs=13.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 197 RRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 197 rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
++...|++=|+..-. -...+.+||.++..|..||-.|+.++.
T Consensus 4 k~~~qn~~laK~Ns~-l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 4 KYSRQNRELAKRNSA-LSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHH-HHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 444555555533322 235677889999999999988887653
No 73
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.79 E-value=52 Score=23.61 Aligned_cols=21 Identities=33% Similarity=0.278 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKL 234 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L 234 (247)
+..+.+|..+...|+.+...|
T Consensus 30 ~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 30 QKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444
No 74
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=43.19 E-value=99 Score=30.37 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.|-+...+.||.-+.++++||..|+-+++.++.+|
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56677888899999999999999999998888765
No 75
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=41.64 E-value=1.3e+02 Score=24.17 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 200 IKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 200 iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
..-||.|+...-=++...+.|+.--.+|+++...-+++++.|.+
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455665555444444444444444455544445555555543
No 76
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=40.66 E-value=70 Score=26.47 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 208 RSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 208 rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
|++.+.+..-++++.+++.|+.+..+|..+++.+.+
T Consensus 98 Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 98 RSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455557778888899999999999888765
No 77
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.72 E-value=1.5e+02 Score=26.83 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEE 229 (247)
Q Consensus 217 ~~eLE~~v~~Le~ 229 (247)
..+|+.+++.|+.
T Consensus 78 n~~L~~e~~~l~~ 90 (276)
T PRK13922 78 NEELKKELLELES 90 (276)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 78
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.66 E-value=2.2e+02 Score=23.65 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEE 230 (247)
Q Consensus 216 y~~eLE~~v~~Le~e 230 (247)
.+..|+.++..++.+
T Consensus 146 ki~~l~~~i~~~e~~ 160 (218)
T cd07596 146 KVEELEEELEEAESA 160 (218)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 79
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=38.46 E-value=74 Score=25.53 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
=|-.++..|+.+|..|..++..++..|
T Consensus 19 LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 19 LLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678889999999999999998877
No 80
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=38.36 E-value=84 Score=25.54 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
|-+-+-.++.++..|...|..|.++++.|.++.
T Consensus 38 ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 38 KEQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666788899999999999999999988764
No 81
>PF14645 Chibby: Chibby family
Probab=38.27 E-value=54 Score=26.84 Aligned_cols=24 Identities=33% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 221 VSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 221 E~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
..+..+|++||.-|+-+++.|..+
T Consensus 77 ~~~n~~L~EENN~Lklk~elLlDM 100 (116)
T PF14645_consen 77 RKENQQLEEENNLLKLKIELLLDM 100 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457777888888777777654
No 82
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=37.20 E-value=2e+02 Score=22.38 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=25.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 193 err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~ 240 (247)
-+|+.+.+.+=+++-..|--+.....+++.++..|.....+|..++..
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~ 57 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQ 57 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHh
Confidence 345555555555555555444444455555555555555555544443
No 83
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.14 E-value=2.2e+02 Score=25.13 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
+..+..|..++..+.+++..++++++
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333333333333333
No 84
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=36.77 E-value=2e+02 Score=22.29 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
-+..|-.+|...++||.+|..+++-|.
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666655553
No 85
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=36.76 E-value=71 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025871 220 LVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~ 239 (247)
|-.++..+..|+..|..+++
T Consensus 26 Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 86
>PRK14127 cell division protein GpsB; Provisional
Probab=36.68 E-value=72 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+.|..++..|+++|..|+.++.++..
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666655544
No 87
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=36.51 E-value=64 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.+..|...+..|-+||..|+-|++.|+++.
T Consensus 23 el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 23 ELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 344555666667778888888887777653
No 88
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=36.24 E-value=1.8e+02 Score=21.67 Aligned_cols=38 Identities=32% Similarity=0.400 Sum_probs=18.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 198 RKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 198 R~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
++-+-|.+|.++=.-+ -.+...|+.||..|+++++...
T Consensus 30 ~L~~ERd~~~~~l~~a-------~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 30 RLRRERDSAERQLGDA-------YEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 3333455554443333 3444455555555555555443
No 89
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.04 E-value=2.1e+02 Score=25.59 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
+.+|+.+...|++++..++.+++.|
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443
No 90
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=35.91 E-value=89 Score=24.21 Aligned_cols=46 Identities=20% Similarity=0.083 Sum_probs=33.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 198 RKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 198 R~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
++|+-=...+.+=.-=-.+++....+..+|+.||+-|..=+..|+.
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444434444444555677888889999999999999998888875
No 91
>PRK14127 cell division protein GpsB; Provisional
Probab=35.26 E-value=70 Score=26.11 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 025871 223 KVSRLEEENLK 233 (247)
Q Consensus 223 ~v~~Le~eN~~ 233 (247)
++..|+.+...
T Consensus 52 e~~~l~~~l~e 62 (109)
T PRK14127 52 ENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 92
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.90 E-value=76 Score=27.77 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e 237 (247)
+..|+.++..|++++..+...
T Consensus 120 ~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 120 NEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333
No 93
>COG5562 Phage envelope protein [General function prediction only]
Probab=34.85 E-value=19 Score=30.71 Aligned_cols=18 Identities=44% Similarity=0.767 Sum_probs=14.8
Q ss_pred cccchhHHH---Hhhhccccc
Q 025871 126 LGELTLEDF---LVQAGLFAE 143 (247)
Q Consensus 126 lgemTLEDF---LvrAGvv~e 143 (247)
-|+.|+|+| |++|||++=
T Consensus 86 sGqttF~ef~~~la~AGVfrw 106 (137)
T COG5562 86 SGQTTFEEFCSALAEAGVFRW 106 (137)
T ss_pred cCCccHHHHHHHHHhCCeEEE
Confidence 367899999 789999873
No 94
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=33.72 E-value=77 Score=27.91 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
..++.+|+.+...|+.+|..|+.++..+.+.|
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy 141 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDY 141 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888888888888888777766
No 95
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.45 E-value=91 Score=21.49 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
-|-.....|..+|..|.++++.|+.+
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888888888888764
No 96
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.22 E-value=1.2e+02 Score=31.88 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+....+|+.++..|+.++..|+.+++.++.
T Consensus 435 ~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 435 EEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555443
No 97
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=32.54 E-value=82 Score=28.90 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Q 025871 211 ARKQAYHNELVS-------KVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 211 ~RKqay~~eLE~-------~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.|...|+..|+. .++.|+.+|..|+++++.|...|
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~~ 142 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLSLPQ 142 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 577788888885 45567778888888887776443
No 98
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=32.39 E-value=2.5e+02 Score=25.64 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
...+..+..++..|+.++..+..++..+...|
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 165 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEA 165 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777665543
No 99
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.35 E-value=78 Score=24.51 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 198 RKIKNRESAARSRARKQ-AYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 198 R~iKNReSA~rSR~RKq-ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
|..+|..|.+=...++. +...+|-.++..+..+...|..++..+.++
T Consensus 49 r~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 49 RAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554443333 345566666666666666666666555443
No 100
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=32.31 E-value=59 Score=31.86 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 220 LVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
|..+-..|++||.+|+.+++.|.+
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 101
>PRK11637 AmiB activator; Provisional
Probab=32.04 E-value=2.7e+02 Score=26.94 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
.+..++.++..|+.+...++.+++.+
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333
No 102
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=32.01 E-value=1e+02 Score=31.79 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 025871 222 SKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 222 ~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.+|..|+.+|..|..++..|+.-
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47778999999999999988764
No 103
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.99 E-value=2.2e+02 Score=25.18 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025871 212 RKQAYHNELVSKVSRLEEE 230 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~e 230 (247)
+.-..+.+||.++-.|+.+
T Consensus 128 ~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQ 146 (190)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554
No 104
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.50 E-value=69 Score=22.63 Aligned_cols=7 Identities=43% Similarity=0.582 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 025871 225 SRLEEEN 231 (247)
Q Consensus 225 ~~Le~eN 231 (247)
+.+++|+
T Consensus 58 ~~le~e~ 64 (68)
T PF06305_consen 58 KKLEKEL 64 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 105
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=30.98 E-value=30 Score=21.51 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=10.7
Q ss_pred ccccccCCchhhhhHHH
Q 025871 89 LARALSGKTVEQVWNEI 105 (247)
Q Consensus 89 lp~~ls~KTVdEVWkdI 105 (247)
+-.|||+-|-++.|+-+
T Consensus 6 ~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 6 PELPLSQETFSDLWNLL 22 (25)
T ss_dssp -----STCCHHHHHHTS
T ss_pred CCCCccHHHHHHHHHhc
Confidence 34579999999999854
No 106
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=30.88 E-value=1.9e+02 Score=21.54 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 025871 222 SKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 222 ~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.++...-.+|.+|+.+++.|+.+
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556778888888877654
No 107
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.56 E-value=97 Score=23.23 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
+.||+.++.-|..|.++|+.|+...
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688888888888888888876543
No 108
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.30 E-value=1.2e+02 Score=25.31 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
-||.++..|+..-..|..+++.|++
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 109
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.24 E-value=55 Score=30.35 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 025871 227 LEEENLKLKKEKV 239 (247)
Q Consensus 227 Le~eN~~L~~e~~ 239 (247)
|+.||.+|++.+.
T Consensus 96 l~~EN~rLr~LL~ 108 (283)
T TIGR00219 96 LKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHhc
Confidence 5666666666443
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.23 E-value=2.4e+02 Score=25.76 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
=+..++.|..+|..|+-+++++..+++.+.+
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3566777777777777777777777766654
No 111
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=30.19 E-value=3.6e+02 Score=23.31 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 190 KSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 190 ~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
...++..+++|+.|..|.-==.+|-+.+.+|..++..-++....+.+.+.+|..
T Consensus 80 ~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas 133 (152)
T PF11500_consen 80 EKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELAS 133 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777666555444566677777777776666666666666666543
No 112
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=29.81 E-value=1.5e+02 Score=29.58 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 189 EKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 189 e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~ 240 (247)
.-..|+|+|+.|+.-|+- |.++..|+.+-..-+..|++|-..|..+++.
T Consensus 109 LaAaE~khrKli~dLE~d---Re~haqdaaeGDDlt~~LEKEReqL~QQiEF 157 (561)
T KOG1103|consen 109 LAAAEKKHRKLIKDLEAD---REAHAQDAAEGDDLTAHLEKEREQLQQQIEF 157 (561)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 345677777777776654 4455555555555555666666666666554
No 113
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=29.79 E-value=1.1e+02 Score=24.52 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+.+++.++..|+.++.+|+.|++-|++
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKK 99 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKE 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777777777777777664
No 114
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.53 E-value=2.8e+02 Score=25.87 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Q 025871 203 RESAARSRARKQAYHNELVSKVSRLE----EENLKLKKEKVRISS 243 (247)
Q Consensus 203 ReSA~rSR~RKqay~~eLE~~v~~Le----~eN~~L~~e~~~L~~ 243 (247)
--+.+....+.++.+.+|+.+++..+ ..+..|..+++.|+.
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 34566677788888889999998888 666677777777654
No 115
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.51 E-value=1.7e+02 Score=30.92 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025871 220 LVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
+..+..+||.|..+|+.++....
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666555555554443
No 116
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=29.30 E-value=3.9e+02 Score=24.20 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+-+..+..|+.++..|+..|..|...+..+...|
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 4445566777777777777777777777776554
No 117
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.15 E-value=80 Score=30.97 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKK 236 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~ 236 (247)
+++|+|+.+||.+|..|..|...|..
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999988877654
No 118
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.09 E-value=80 Score=25.96 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
=|.-++.|-.+|...++||-+|+.|++-|
T Consensus 68 LQnTLdDLSqRVdsVKEEnLKLrSENQVL 96 (120)
T KOG3650|consen 68 LQNTLDDLSQRVDSVKEENLKLRSENQVL 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 35567788888988888888888887655
No 119
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.01 E-value=3.3e+02 Score=22.44 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhcc
Q 025871 229 EENLKLKKEKVRISSMF 245 (247)
Q Consensus 229 ~eN~~L~~e~~~L~~~y 245 (247)
+++.+|+.-+..++++|
T Consensus 96 E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555666666666555
No 120
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=28.97 E-value=89 Score=22.71 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKEK 238 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~ 238 (247)
.|..++..|+.+|.+|+.-+
T Consensus 37 ~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 37 ALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777766544
No 121
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=28.82 E-value=95 Score=29.87 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.-++++..++..|+.+...|++++..|..+
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456778888889999999999999888653
No 122
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=28.70 E-value=79 Score=27.81 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=13.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLE---EENLKLKKEKVRI 241 (247)
Q Consensus 219 eLE~~v~~Le---~eN~~L~~e~~~L 241 (247)
+|+.+++.|- .+|..+...+..+
T Consensus 58 ~L~~~l~~Li~~Ar~Ne~~~~~~~~l 83 (225)
T PF04340_consen 58 QLEEQLEELIENARENEAIFQRLHRL 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5565555554 4666666665544
No 123
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=28.08 E-value=95 Score=24.45 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 025871 223 KVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 223 ~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+|...-.||..|+.++..|++.|
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445579999999999998877
No 124
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.69 E-value=78 Score=24.97 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 025871 224 VSRLEEENLKLKKEK 238 (247)
Q Consensus 224 v~~Le~eN~~L~~e~ 238 (247)
.+.|.+||+.|+.|.
T Consensus 32 ~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 32 NAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 125
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.61 E-value=2e+02 Score=25.98 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 025871 211 ARKQAYHNELVSKVS---RLEEENLKLKKEK 238 (247)
Q Consensus 211 ~RKqay~~eLE~~v~---~Le~eN~~L~~e~ 238 (247)
++=++.+.+|+.++. .|++||.+|++.+
T Consensus 79 ~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 79 EELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444 4556666665543
No 126
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=27.58 E-value=3e+02 Score=24.95 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 198 RKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 198 R~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
++-.-=|.+.+.|....+.+++|+.++..|.++.+.|+.++..+.
T Consensus 99 tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 99 TLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556667777778888888888888887777877776654
No 127
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=27.25 E-value=21 Score=32.95 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
+.+|...|..|..+|++|+++++.|+.+
T Consensus 131 I~dLrrlVe~L~aeNErLr~EnkqL~ae 158 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRRENKQLKAE 158 (243)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556666666666666666666543
No 128
>KOG2829 consensus E2F-like protein [Transcription]
Probab=27.10 E-value=1.6e+02 Score=28.32 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025871 211 ARKQAYHNELVSKVSRLEE 229 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~ 229 (247)
++|++|+.||..++..++.
T Consensus 149 ~kK~a~lqEl~~q~~~fkn 167 (326)
T KOG2829|consen 149 KKKAAQLQELIEQVSAFKN 167 (326)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7799999999999987654
No 129
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=26.64 E-value=34 Score=25.99 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=13.5
Q ss_pred CcccchhHHHHhhhccc
Q 025871 125 TLGELTLEDFLVQAGLF 141 (247)
Q Consensus 125 tlgemTLEDFLvrAGvv 141 (247)
.|=.||.|||+.+|+..
T Consensus 41 ~LC~lt~edF~~~~~~~ 57 (75)
T cd08531 41 ELCKMTKEDFLRLTSAY 57 (75)
T ss_pred HHHcCCHHHHHHHcCCC
Confidence 45569999999998654
No 130
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=26.62 E-value=1.1e+02 Score=23.37 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
+.+|-.+...|+++...|.+++-.+...||
T Consensus 4 L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL 33 (80)
T PF09340_consen 4 LKELLQKKKKLEKDLAALEKQIYDKETSYL 33 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666666666666555554
No 131
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=26.59 E-value=1.1e+02 Score=28.57 Aligned_cols=27 Identities=37% Similarity=0.323 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~ 240 (247)
.+.+..+..++..|++||.+|+..+..
T Consensus 82 l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 82 LAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345567778888999999999987644
No 132
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=26.56 E-value=79 Score=30.66 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 203 RESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 203 ReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
+.|.+--=+--..|+.+||.+.-+|-.+|.+|++.+-++.
T Consensus 93 KLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~~ 132 (373)
T KOG0561|consen 93 KLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLEED 132 (373)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhhhc
Confidence 3344444445568999999988888889999998876653
No 133
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=26.48 E-value=3.7e+02 Score=22.25 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=34.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 195 r~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
...|....|-++---|+==++++..||-+...++.-|..|.+.+..|
T Consensus 12 Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkML 58 (134)
T PF08232_consen 12 EWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKML 58 (134)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777888888888887777777777776655
No 134
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.36 E-value=4.7e+02 Score=23.38 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
|...|+..+..++.+...|.++++.+
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 135
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=26.19 E-value=82 Score=29.54 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.+.|+.++..|+++|.+|+.+++.+..
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~ 60 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQA 60 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666655555544
No 136
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.02 E-value=3e+02 Score=28.03 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+...++|.+++.|+.||..|+.+++.+..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44557899999999999999999876554
No 137
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.69 E-value=3.8e+02 Score=22.04 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 195 r~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++.-+..-.|...-|+..=....++|+..+..|..+|......+.+|..+
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666555556667777777776666666666655544
No 138
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=25.69 E-value=37 Score=25.62 Aligned_cols=15 Identities=40% Similarity=0.233 Sum_probs=12.6
Q ss_pred cccchhHHHHhhhcc
Q 025871 126 LGELTLEDFLVQAGL 140 (247)
Q Consensus 126 lgemTLEDFLvrAGv 140 (247)
|=.||.|||+.+|+.
T Consensus 40 LC~ls~edF~~~~p~ 54 (71)
T cd08533 40 LCALGKERFLELAPD 54 (71)
T ss_pred HHcCCHHHHHHHcCC
Confidence 456999999999874
No 139
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=25.51 E-value=1.3e+02 Score=24.30 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.++.+.+.|..+|..|+.+++.|++
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~d 85 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKD 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5556666677777777777766654
No 140
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=25.29 E-value=1.4e+02 Score=24.91 Aligned_cols=29 Identities=34% Similarity=0.357 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 210 RARKQAYHNELVSKVSRLEEENLKLKKEK 238 (247)
Q Consensus 210 R~RKqay~~eLE~~v~~Le~eN~~L~~e~ 238 (247)
...--.++-.|..+...|++||..|+.|+
T Consensus 91 ~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 91 HLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34445677788888889999999888875
No 141
>PRK14160 heat shock protein GrpE; Provisional
Probab=25.28 E-value=1e+02 Score=27.85 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.|+.++..|+.++..|+.+++.+++.|
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~ 84 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRL 84 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444433
No 142
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.25 E-value=1.3e+02 Score=28.18 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 199 KIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 199 ~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.++-++.-..--.++++..+++..++..|+.||..|...+..|-.
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 444444444445667777777777777777777777766655543
No 143
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=25.22 E-value=1.6e+02 Score=27.67 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 196 ~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
.|+++.+....-+.+.-.-..+..||.++..++.+|.....++..++
T Consensus 146 ~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 146 RRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 33345544443222222234677888888888877777766666554
No 144
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.18 E-value=3e+02 Score=24.62 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 202 NRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 202 NReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.|.-+-..+..+.+-+.++|.++...+.+.+.++.++..|.++
T Consensus 149 ~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 149 ERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3433444455677788899999999999999999888877653
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.14 E-value=1.7e+02 Score=22.90 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e 237 (247)
=|..+|+.|+++|..|..+
T Consensus 22 LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 146
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=25.12 E-value=2.6e+02 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 025871 201 KNRESAARSRARKQAYHNELVSKVS-RLEEEN 231 (247)
Q Consensus 201 KNReSA~rSR~RKqay~~eLE~~v~-~Le~eN 231 (247)
-.|..+-.-|.+.+++-..|+.++. +|.+|-
T Consensus 962 ~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~ 993 (1259)
T KOG0163|consen 962 TKRKAEEEQRKAQEEEERRLALELQEQLAKEA 993 (1259)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444445444554444 444433
No 147
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=24.90 E-value=3.7e+02 Score=26.13 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
|=++.-..+|.++.+|+++|.-+.++-+.|...|
T Consensus 30 ~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qy 63 (328)
T PF15369_consen 30 RLKAEQESFEKKIRQLEEQNELIIKEREDLQQQY 63 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3345667788999999999999988888777665
No 148
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.42 E-value=3.8e+02 Score=23.43 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025871 218 NELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
.....++..|+..|..|+.+++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555566666666665554
No 149
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.35 E-value=1.9e+02 Score=21.21 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLK 233 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~ 233 (247)
+..++.+...|+.|...
T Consensus 40 ~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 40 IDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 150
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.24 E-value=4.2e+02 Score=24.87 Aligned_cols=29 Identities=34% Similarity=0.234 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
+.+++.|+.+.++|++....|.-+...|+
T Consensus 169 ~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 169 QERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 34444555555555544444433333333
No 151
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=24.13 E-value=3.7e+02 Score=27.13 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEK 238 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~ 238 (247)
++.+.+.|.++..|++||..|..+.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888877664
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.95 E-value=2.2e+02 Score=23.37 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 195 r~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e 237 (247)
+.+++...-+.....-.|=+..+.+++.++..++..-..|..+
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333333333444455555555555444433333333
No 153
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=23.94 E-value=36 Score=26.15 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=10.1
Q ss_pred ccchhHHHHhhh
Q 025871 127 GELTLEDFLVQA 138 (247)
Q Consensus 127 gemTLEDFLvrA 138 (247)
|=||||+||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 559999999874
No 154
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.88 E-value=2e+02 Score=21.54 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025871 221 VSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 221 E~~v~~Le~eN~~L~~e~~~ 240 (247)
+.++..|+..-..+..++..
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 155
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=23.87 E-value=1.7e+02 Score=17.46 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025871 218 NELVSKVSRLEEENLKL 234 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L 234 (247)
.+||++...|+.+.+.+
T Consensus 4 k~lEa~~qkLe~e~q~~ 20 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQIS 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 47888888888887765
No 156
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=23.65 E-value=1.7e+02 Score=23.13 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 025871 230 ENLKLKKEKV 239 (247)
Q Consensus 230 eN~~L~~e~~ 239 (247)
+|.+.+++++
T Consensus 54 kn~~vrqkne 63 (87)
T PF10883_consen 54 KNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHhH
Confidence 4444444444
No 157
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=23.57 E-value=42 Score=25.57 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=13.6
Q ss_pred cccchhHHHHhhhcccc
Q 025871 126 LGELTLEDFLVQAGLFA 142 (247)
Q Consensus 126 lgemTLEDFLvrAGvv~ 142 (247)
|=.||-|||+.+|+...
T Consensus 42 LC~LskedF~~~ap~~~ 58 (75)
T cd08540 42 LCKMTKDDFQRLTPSYN 58 (75)
T ss_pred HHhCCHHHHHHHcCCCC
Confidence 55699999999997544
No 158
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.52 E-value=1.3e+02 Score=31.57 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=9.2
Q ss_pred CchHHHhhhcCCCCC
Q 025871 49 MNLDELLKSVWSTEA 63 (247)
Q Consensus 49 MNmDElLknIw~ae~ 63 (247)
...-.||+=||+-.+
T Consensus 37 ~s~~rllrli~~~kp 51 (652)
T COG2433 37 VSLRRLLRLIWSYKP 51 (652)
T ss_pred hhHHHHHHHHHhcCC
Confidence 355667777776544
No 159
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.39 E-value=2e+02 Score=21.57 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
++.+.++|..+..|......+..+++.|..++
T Consensus 39 r~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 39 RAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888888888888888888887654
No 160
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=23.38 E-value=3.4e+02 Score=25.46 Aligned_cols=13 Identities=15% Similarity=0.361 Sum_probs=8.1
Q ss_pred chhhhhHHHHhcc
Q 025871 97 TVEQVWNEIQQGQ 109 (247)
Q Consensus 97 TVdEVWkdI~~~~ 109 (247)
.+.|.|+.|..+.
T Consensus 76 ~c~EL~~~I~egr 88 (325)
T PF08317_consen 76 SCRELKKYISEGR 88 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 4457777776553
No 161
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.26 E-value=1.2e+02 Score=29.13 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
++.|..++..|++||..|+.+-..|.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666666655554
No 162
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.17 E-value=3.2e+02 Score=29.96 Aligned_cols=9 Identities=33% Similarity=1.010 Sum_probs=4.7
Q ss_pred ccchhHHHH
Q 025871 127 GELTLEDFL 135 (247)
Q Consensus 127 gemTLEDFL 135 (247)
|-.+-++|.
T Consensus 244 GkL~~dEfi 252 (1118)
T KOG1029|consen 244 GKLSADEFI 252 (1118)
T ss_pred CcccHHHHH
Confidence 445555553
No 163
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=23.14 E-value=40 Score=25.81 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=31.8
Q ss_pred cccccccccCCchhhhhHHHHhccccccCcccccc---CCCCCcccchhHHHHhhhc
Q 025871 86 SLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSH---QREPTLGELTLEDFLVQAG 139 (247)
Q Consensus 86 S~tlp~~ls~KTVdEVWkdI~~~~~~~~~~~~~~~---~~q~tlgemTLEDFLvrAG 139 (247)
.+-+|.....=|.++|+.=|.-......-...... -.-..|=.||.|||+.+++
T Consensus 10 ~~~ip~dP~~Wt~~~V~~Wl~w~~~ef~L~~~~~~~f~m~G~~Lc~ls~edF~~~~p 66 (82)
T smart00251 10 RLGIPADPQLWTEDHVLEWLEWAVKEFSLSPIDFSKFDMSGKELCSMSKEEFLERAP 66 (82)
T ss_pred HhCCCCChhhCCHHHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHcCCHHHHHHHcC
Confidence 34556666677889998877654322211111111 1112455699999999997
No 164
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.76 E-value=4.7e+02 Score=26.25 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=21.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
++++-+.++=+.-.++....+.....|+.++..|+.++..+..++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444344433333333344444555555555555555555554443
No 165
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.54 E-value=1.3e+02 Score=28.56 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 025871 225 SRLEEENLKLKKEKVR 240 (247)
Q Consensus 225 ~~Le~eN~~L~~e~~~ 240 (247)
++|+.+|..++...+.
T Consensus 94 s~Leddlsqt~aikeq 109 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQ 109 (333)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 166
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=22.51 E-value=44 Score=24.42 Aligned_cols=16 Identities=50% Similarity=0.439 Sum_probs=13.4
Q ss_pred CcccchhHHHHhhhcc
Q 025871 125 TLGELTLEDFLVQAGL 140 (247)
Q Consensus 125 tlgemTLEDFLvrAGv 140 (247)
.|=.||.|||+.|++.
T Consensus 37 ~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 37 ELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHhCCHHHHHHHcCC
Confidence 4566999999999975
No 167
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=22.43 E-value=5.8e+02 Score=23.17 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEEN 231 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN 231 (247)
.-+.-++|+.++.++-..|...+..=++...+.+.++...+.+-
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea 73 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQR 73 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666665555555555555555444433
No 168
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.34 E-value=1.4e+02 Score=22.55 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 025871 222 SKVSRLEEENLKLK 235 (247)
Q Consensus 222 ~~v~~Le~eN~~L~ 235 (247)
..+..|++||=.|+
T Consensus 7 ~~i~~L~KENF~LK 20 (75)
T PF07989_consen 7 EQIDKLKKENFNLK 20 (75)
T ss_pred HHHHHHHHhhhhHH
Confidence 33333333333333
No 169
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=22.32 E-value=1.9e+02 Score=24.11 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025871 220 LVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e 237 (247)
|+.+++.|+.....|.++
T Consensus 75 L~er~E~Le~ri~tLekQ 92 (119)
T COG1382 75 LEERKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 170
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.30 E-value=2e+02 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.++|-.++..|+++...|..++..+.++
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666555443
No 171
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.17 E-value=2.7e+02 Score=24.33 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
+|+.++..|+.++..|..++..+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 172
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=21.89 E-value=5.2e+02 Score=22.29 Aligned_cols=33 Identities=9% Similarity=-0.008 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 025871 190 KSIERRLRRKIKNRESAARSRARKQAYHNELVS 222 (247)
Q Consensus 190 ~~~err~rR~iKNReSA~rSR~RKqay~~eLE~ 222 (247)
..-+.|+.++..+-..|.+.+..=.+...+.|.
T Consensus 37 ~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~ 69 (155)
T PRK06569 37 EIFNNRQTNIQDNITQADTLTIEVEKLNKYYNE 69 (155)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443333333333
No 173
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=21.72 E-value=2.5e+02 Score=18.46 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.|-.+.++|+...+.|+..++.|++-
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566777888888888888888764
No 174
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.71 E-value=2.7e+02 Score=25.05 Aligned_cols=28 Identities=32% Similarity=0.378 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
..|.+++..|.++|.+|..+.+.++..|
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~ 125 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRS 125 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 3577788888888888877777766554
No 175
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=21.61 E-value=71 Score=25.13 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=33.6
Q ss_pred ccccccccccCCchhhhhHHHHhccccccCccccc---cCCCCCcccchhHHHHhhhcc
Q 025871 85 ASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS---HQREPTLGELTLEDFLVQAGL 140 (247)
Q Consensus 85 gS~tlp~~ls~KTVdEVWkdI~~~~~~~~~~~~~~---~~~q~tlgemTLEDFLvrAGv 140 (247)
.-+.+|.....=|-+.||.=+.-......-.+... .-.-..|=.||.|||+.||+.
T Consensus 11 ~rl~IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v~~~~F~m~Gk~LC~Ls~edF~~r~p~ 69 (89)
T cd08534 11 ERLKIPYDPMEWTEDQVLHWVVWAVKEFSLTDIDLSDWNITGRELCSLTQEEFFQRVPK 69 (89)
T ss_pred HhcCCCCChHHcCHHHHHHHHHHHHHHcCCCCCChhhcCCCHHHHhcCCHHHHHHHcCC
Confidence 34667777778888999887765432222111111 111123556999999999874
No 176
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.36 E-value=3.5e+02 Score=22.65 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 210 RARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 210 R~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
--++.--+.+|...+..|+.++..|..+++.|++
T Consensus 104 ~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 104 SLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456678888999999999999999888875
No 177
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=21.29 E-value=85 Score=24.75 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=32.8
Q ss_pred ccccccccccCCchhhhhHHHHhccccccCccccccC---CCCCcccchhHHHHhhhcc
Q 025871 85 ASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQ---REPTLGELTLEDFLVQAGL 140 (247)
Q Consensus 85 gS~tlp~~ls~KTVdEVWkdI~~~~~~~~~~~~~~~~---~q~tlgemTLEDFLvrAGv 140 (247)
.-+.+|.....=|.+.||.=++-.....+-.+..... .-.-|=.||.|||+.+|..
T Consensus 11 ~rl~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i~~~~F~m~Gk~LC~Ls~edF~~~~P~ 69 (88)
T cd08542 11 QRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMNGAALCALGKECFLELAPD 69 (88)
T ss_pred hhcCCCCChhhCCHHHHHHHHHHHHHHcCCCCCCcccCCCCHHHHHcCCHHHHHhHcCC
Confidence 3466787778889999987665432211111111111 1123556999999999864
No 178
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.13 E-value=3.4e+02 Score=24.84 Aligned_cols=8 Identities=25% Similarity=0.260 Sum_probs=4.4
Q ss_pred hhhHHHHh
Q 025871 100 QVWNEIQQ 107 (247)
Q Consensus 100 EVWkdI~~ 107 (247)
+-|++|+.
T Consensus 61 Dsvr~i~~ 68 (216)
T KOG1962|consen 61 DSVRRIQK 68 (216)
T ss_pred HHHHHHHH
Confidence 44666654
No 179
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.05 E-value=1.3e+02 Score=27.24 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
.+||++|+.|+.|-.+|+..++.+-
T Consensus 188 ~dlearv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 188 SDLEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999888764
No 180
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.95 E-value=3.5e+02 Score=19.90 Aligned_cols=29 Identities=31% Similarity=0.289 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
..+.+-|.+...|..+...|++++++++.
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666666777777777777776654
No 181
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.73 E-value=5.4e+02 Score=22.01 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhc
Q 025871 191 SIERRLRRKIKNRESAARSRARKQAYHNELV------------SKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE------------~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++....-..|.+.=-++-...|.+-+....| .+|..|.+|+..|+.++.+++-.
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555554444333 35778888888888888766543
No 182
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=20.70 E-value=50 Score=24.40 Aligned_cols=16 Identities=44% Similarity=0.482 Sum_probs=13.5
Q ss_pred CcccchhHHHHhhhcc
Q 025871 125 TLGELTLEDFLVQAGL 140 (247)
Q Consensus 125 tlgemTLEDFLvrAGv 140 (247)
.|=.||.|||+.|++.
T Consensus 39 ~LC~ms~edF~~~~p~ 54 (68)
T cd08757 39 TLCSMTEEEFREAAGS 54 (68)
T ss_pred HHHcCCHHHHHHHcCC
Confidence 4667999999999875
No 183
>PRK11637 AmiB activator; Provisional
Probab=20.68 E-value=5.9e+02 Score=24.58 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025871 223 KVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 223 ~v~~Le~eN~~L~~e~~~L~ 242 (247)
++..++.+...|..+++.+.
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433
No 184
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.36 E-value=2.4e+02 Score=22.07 Aligned_cols=12 Identities=50% Similarity=0.684 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 025871 227 LEEENLKLKKEK 238 (247)
Q Consensus 227 Le~eN~~L~~e~ 238 (247)
|+.+|..|+.+.
T Consensus 51 L~~en~qLk~E~ 62 (79)
T PRK15422 51 LERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 185
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.36 E-value=2.9e+02 Score=20.21 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025871 220 LVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~~ 240 (247)
|-.+|.+|..+...|+.++..
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ 35 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 186
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.14 E-value=2.3e+02 Score=22.69 Aligned_cols=7 Identities=29% Similarity=0.416 Sum_probs=4.5
Q ss_pred hhHHHHh
Q 025871 130 TLEDFLV 136 (247)
Q Consensus 130 TLEDFLv 136 (247)
||++|+.
T Consensus 31 ~Lq~~i~ 37 (118)
T PF13815_consen 31 TLQENIE 37 (118)
T ss_pred HHHHHHH
Confidence 6777763
No 187
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.05 E-value=5e+02 Score=26.34 Aligned_cols=54 Identities=24% Similarity=0.360 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHhcc
Q 025871 192 IERRLRRKIKNRESAARSRARKQAYH---NELVSKVSRLEEENLKLKKEKVR-ISSMF 245 (247)
Q Consensus 192 ~err~rR~iKNReSA~rSR~RKqay~---~eLE~~v~~Le~eN~~L~~e~~~-L~~~y 245 (247)
-+++++...|.+..+.....|+++-. .+|+-++..|-+.=.+|+++++. |..+|
T Consensus 441 L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk~y 498 (507)
T PF05600_consen 441 LQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISKRY 498 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556666666666666655544 44556777788888888888776 77776
Done!