Query 025871
Match_columns 247
No_of_seqs 214 out of 730
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:28:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 9.6E-16 3.3E-20 108.8 7.7 53 194-246 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.4 5.7E-13 2E-17 96.4 7.5 53 193-245 1-53 (63)
3 2dgc_A Protein (GCN4); basic d 99.3 1.9E-12 6.5E-17 94.1 7.2 56 191-246 6-61 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.3 6.6E-12 2.2E-16 90.0 7.4 52 194-245 1-52 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 3E-11 1E-15 86.9 7.4 52 194-245 1-52 (62)
6 1ci6_A Transcription factor AT 98.9 1.2E-09 4E-14 79.2 6.1 52 194-245 2-53 (63)
7 1gu4_A CAAT/enhancer binding p 98.8 1.4E-08 4.7E-13 76.8 7.4 58 188-245 9-66 (78)
8 1hjb_A Ccaat/enhancer binding 98.8 1.5E-08 5.2E-13 78.0 7.4 58 188-245 9-66 (87)
9 3a5t_A Transcription factor MA 98.6 2.7E-09 9.3E-14 85.0 -0.3 59 187-245 30-95 (107)
10 1gd2_E Transcription factor PA 98.4 1.2E-06 4.1E-11 64.9 7.5 49 195-243 9-57 (70)
11 2wt7_B Transcription factor MA 98.1 1.3E-05 4.5E-10 62.0 9.2 58 188-245 21-85 (90)
12 1skn_P DNA-binding domain of S 96.9 0.00049 1.7E-08 53.3 2.8 35 188-222 56-90 (92)
13 2oqq_A Transcription factor HY 95.8 0.011 3.6E-07 39.7 4.1 31 214-244 2-32 (42)
14 2c9l_Y EB1, zebra, BZLF1 trans 95.3 0.098 3.4E-06 37.2 7.8 44 197-240 4-47 (63)
15 3m48_A General control protein 94.0 0.057 2E-06 34.5 3.5 30 216-245 1-30 (33)
16 2oxj_A Hybrid alpha/beta pepti 93.8 0.077 2.6E-06 34.1 3.9 29 216-244 2-30 (34)
17 1kd8_B GABH BLL, GCN4 acid bas 93.4 0.096 3.3E-06 34.0 3.9 29 216-244 2-30 (36)
18 1kd8_A GABH AIV, GCN4 acid bas 92.5 0.1 3.4E-06 33.9 3.0 29 216-244 2-30 (36)
19 3c3f_A Alpha/beta peptide with 92.4 0.17 5.7E-06 32.5 3.9 29 216-244 2-30 (34)
20 2kz5_A Transcription factor NF 92.3 0.012 4.2E-07 45.4 -1.7 27 189-215 61-87 (91)
21 3c3g_A Alpha/beta peptide with 92.1 0.19 6.6E-06 32.0 3.9 28 217-244 2-29 (33)
22 2bni_A General control protein 91.3 0.23 7.8E-06 31.9 3.6 30 215-244 1-30 (34)
23 1uo4_A General control protein 91.1 0.26 8.7E-06 31.7 3.7 30 216-245 2-31 (34)
24 2wq1_A General control protein 90.7 0.32 1.1E-05 31.0 3.9 28 217-244 2-29 (33)
25 2hy6_A General control protein 90.5 0.31 1.1E-05 31.3 3.7 29 216-244 2-30 (34)
26 3s9g_A Protein hexim1; cyclin 87.0 3.1 0.0001 32.7 7.9 29 214-242 64-92 (104)
27 1gu4_A CAAT/enhancer binding p 85.2 7.8 0.00027 28.7 9.1 59 188-246 13-74 (78)
28 1fmh_A General control protein 84.8 1.7 5.8E-05 27.1 4.4 29 217-245 3-31 (33)
29 2r2v_A GCN4 leucine zipper; co 84.3 1.3 4.5E-05 28.3 3.9 29 216-244 2-30 (34)
30 1hjb_A Ccaat/enhancer binding 83.8 7.1 0.00024 29.5 8.5 59 188-246 13-74 (87)
31 1nkp_B MAX protein, MYC proto- 81.6 2 7E-05 31.4 4.7 32 213-244 45-76 (83)
32 1am9_A Srebp-1A, protein (ster 80.9 2.4 8.1E-05 31.3 4.8 53 191-243 12-78 (82)
33 1p9i_A Cortexillin I/GCN4 hybr 79.8 1.9 6.4E-05 26.6 3.2 26 218-243 2-27 (31)
34 1jnm_A Proto-oncogene C-JUN; B 79.5 8.9 0.0003 26.6 7.2 55 192-246 3-60 (62)
35 3he5_A Synzip1; heterodimeric 78.9 2.8 9.6E-05 28.2 4.1 23 216-238 4-26 (49)
36 1nlw_A MAD protein, MAX dimeri 78.9 3.8 0.00013 30.2 5.4 33 212-244 44-76 (80)
37 1dip_A Delta-sleep-inducing pe 78.2 2.4 8.1E-05 31.7 4.0 22 215-236 22-43 (78)
38 2wuj_A Septum site-determining 75.5 3 0.0001 28.9 3.7 30 215-244 27-56 (57)
39 1deb_A APC protein, adenomatou 72.4 4.6 0.00016 28.1 4.0 26 218-243 6-31 (54)
40 2lz1_A Nuclear factor erythroi 71.6 0.07 2.4E-06 41.1 -5.9 24 191-214 63-86 (90)
41 2oa5_A Hypothetical protein BQ 71.4 2.2 7.6E-05 33.9 2.5 25 215-239 8-32 (110)
42 1ci6_A Transcription factor AT 69.7 14 0.00049 25.9 6.2 30 215-244 30-59 (63)
43 3nmd_A CGMP dependent protein 68.5 8 0.00028 28.5 4.8 33 211-243 36-68 (72)
44 2oqq_A Transcription factor HY 66.8 11 0.00039 25.0 4.8 25 214-238 16-40 (42)
45 4dzn_A Coiled-coil peptide CC- 66.2 11 0.00038 23.4 4.3 29 217-245 4-32 (33)
46 1hlo_A Protein (transcription 64.7 4.5 0.00015 29.4 2.9 25 213-237 55-79 (80)
47 1nkp_A C-MYC, MYC proto-oncoge 63.5 14 0.00047 27.5 5.4 31 212-242 49-86 (88)
48 1zme_C Proline utilization tra 61.9 5.7 0.0002 27.2 2.9 26 214-239 43-68 (70)
49 2yy0_A C-MYC-binding protein; 61.7 12 0.0004 25.8 4.3 20 219-238 30-49 (53)
50 1gmj_A ATPase inhibitor; coile 60.8 51 0.0018 24.8 8.9 41 203-243 37-79 (84)
51 1uii_A Geminin; human, DNA rep 60.5 11 0.00037 28.5 4.3 27 217-243 48-74 (83)
52 1go4_E MAD1 (mitotic arrest de 60.3 12 0.00042 29.0 4.7 28 216-243 13-40 (100)
53 1t2k_D Cyclic-AMP-dependent tr 59.3 40 0.0014 23.1 8.6 33 214-246 28-60 (61)
54 2dfs_A Myosin-5A; myosin-V, in 57.2 35 0.0012 35.9 8.9 29 215-243 1016-1044(1080)
55 2dgc_A Protein (GCN4); basic d 56.4 35 0.0012 23.9 6.2 52 188-239 7-61 (63)
56 1zxa_A CGMP-dependent protein 56.2 21 0.00072 25.8 5.1 31 213-243 23-53 (67)
57 1gd2_E Transcription factor PA 55.5 41 0.0014 24.3 6.6 30 215-244 36-65 (70)
58 2yy0_A C-MYC-binding protein; 55.0 15 0.00052 25.2 4.0 28 217-244 21-48 (53)
59 2wt7_B Transcription factor MA 54.3 16 0.00053 27.9 4.3 37 208-244 30-70 (90)
60 3oja_A Leucine-rich immune mol 53.8 46 0.0016 30.6 8.4 35 209-243 429-463 (487)
61 1nkp_B MAX protein, MYC proto- 53.7 12 0.00041 27.1 3.5 27 216-242 55-81 (83)
62 2wt7_A Proto-oncogene protein 53.2 54 0.0018 22.7 8.4 53 193-245 5-60 (63)
63 1nkp_A C-MYC, MYC proto-oncoge 51.0 21 0.00072 26.5 4.6 19 223-241 53-71 (88)
64 1dip_A Delta-sleep-inducing pe 50.3 21 0.00071 26.6 4.3 28 217-244 17-44 (78)
65 1t6f_A Geminin; coiled-coil, c 49.2 30 0.001 22.4 4.3 26 218-243 10-35 (37)
66 3ra3_B P2F; coiled coil domain 47.3 12 0.00042 22.4 2.2 14 227-240 5-18 (28)
67 3nmd_A CGMP dependent protein 47.0 40 0.0014 24.8 5.4 32 213-244 31-62 (72)
68 2p22_D Hypothetical 12.0 kDa p 46.9 5.4 0.00019 29.9 0.7 11 49-59 1-11 (79)
69 3mq7_A Bone marrow stromal ant 46.6 61 0.0021 26.0 6.8 30 214-243 70-99 (121)
70 3w03_C DNA repair protein XRCC 45.7 25 0.00084 30.0 4.7 29 216-244 153-181 (184)
71 2er8_A Regulatory protein Leu3 45.3 12 0.00041 25.8 2.3 22 214-235 48-69 (72)
72 1a93_B MAX protein, coiled coi 44.6 34 0.0012 21.8 4.1 23 219-241 11-33 (34)
73 2ve7_C Kinetochore protein NUF 42.8 17 0.00059 31.9 3.4 55 190-244 116-177 (250)
74 3swy_A Cyclic nucleotide-gated 41.5 35 0.0012 23.0 4.0 24 220-243 3-26 (46)
75 3mq9_A Bone marrow stromal ant 41.2 43 0.0015 30.7 6.0 27 216-242 444-470 (471)
76 1nlw_A MAD protein, MAX dimeri 41.2 29 0.00098 25.4 3.9 25 217-241 56-80 (80)
77 2wg5_A General control protein 41.0 25 0.00084 27.1 3.7 28 216-243 8-35 (109)
78 1wt6_A Myotonin-protein kinase 40.6 1.1E+02 0.0039 22.8 7.2 23 219-241 49-71 (81)
79 3a2a_A Voltage-gated hydrogen 40.2 60 0.002 22.9 5.1 29 215-243 18-46 (58)
80 3he4_B Synzip5; heterodimeric 39.3 63 0.0021 21.3 4.8 27 214-240 9-35 (46)
81 2k8f_B Cellular tumor antigen 38.8 9.6 0.00033 24.7 0.8 22 84-105 5-26 (39)
82 3v86_A De novo design helix; c 38.4 41 0.0014 20.0 3.5 25 217-241 2-26 (27)
83 3oja_B Anopheles plasmodium-re 36.3 1.5E+02 0.005 27.7 8.9 22 223-244 559-580 (597)
84 3viq_B Mating-type switching p 36.0 50 0.0017 24.9 4.5 24 219-242 5-28 (85)
85 3s4r_A Vimentin; alpha-helix, 35.8 30 0.001 26.0 3.4 22 222-243 23-44 (93)
86 3hnw_A Uncharacterized protein 35.4 1.7E+02 0.0058 23.4 8.4 31 212-242 100-130 (138)
87 1gk7_A Vimentin; intermediate 34.6 18 0.00062 23.4 1.6 19 222-240 20-38 (39)
88 3oja_B Anopheles plasmodium-re 34.5 1.6E+02 0.0055 27.4 8.9 16 215-230 537-552 (597)
89 2wvr_A Geminin; DNA replicatio 34.4 41 0.0014 29.3 4.3 21 217-237 124-144 (209)
90 3q4f_C DNA repair protein XRCC 34.2 35 0.0012 29.3 3.8 22 216-237 162-183 (186)
91 1wlq_A Geminin; coiled-coil; 2 33.9 42 0.0014 25.3 3.8 20 217-236 47-66 (83)
92 2jee_A YIIU; FTSZ, septum, coi 33.2 65 0.0022 24.1 4.7 21 220-240 25-45 (81)
93 2xv5_A Lamin-A/C; structural p 33.0 1.2E+02 0.0043 21.8 6.2 28 210-237 7-34 (74)
94 2zvf_A Alanyl-tRNA synthetase; 33.0 32 0.0011 27.4 3.3 24 219-242 29-52 (171)
95 4ati_A MITF, microphthalmia-as 32.2 1.4E+02 0.0047 23.2 6.8 53 190-242 32-111 (118)
96 2g48_C Islet amyloid polypepti 31.9 26 0.0009 22.7 2.1 19 130-148 11-29 (37)
97 1l8d_A DNA double-strand break 31.7 86 0.0029 23.3 5.4 24 216-239 79-102 (112)
98 3hnw_A Uncharacterized protein 31.7 73 0.0025 25.6 5.2 16 226-241 107-122 (138)
99 3oja_A Leucine-rich immune mol 31.6 1.9E+02 0.0064 26.4 8.7 44 202-245 429-472 (487)
100 3ra3_A P1C; coiled coil domain 31.2 46 0.0016 19.9 2.9 23 220-242 5-27 (28)
101 3w03_C DNA repair protein XRCC 30.1 65 0.0022 27.4 4.8 32 214-245 144-175 (184)
102 4ath_A MITF, microphthalmia-as 28.5 90 0.0031 23.4 4.8 30 214-243 48-77 (83)
103 2jws_A GA88; evolution, foldin 27.4 19 0.00064 25.4 0.8 10 94-103 35-44 (56)
104 3vkg_A Dynein heavy chain, cyt 27.3 1.3E+02 0.0044 35.7 7.9 41 204-244 2024-2064(3245)
105 3a7p_A Autophagy protein 16; c 26.7 2.7E+02 0.0092 23.0 8.4 27 219-245 107-133 (152)
106 3o0z_A RHO-associated protein 26.6 2.8E+02 0.0097 23.2 8.4 42 196-237 71-112 (168)
107 2zxx_A Geminin; coiled-coil, c 26.6 54 0.0018 24.4 3.3 24 216-239 42-65 (79)
108 2xdj_A Uncharacterized protein 26.4 1.9E+02 0.0067 21.2 8.4 33 211-243 23-55 (83)
109 2pnv_A Small conductance calci 25.3 72 0.0025 21.1 3.4 23 217-239 18-40 (43)
110 1kd8_A GABH AIV, GCN4 acid bas 25.2 1.4E+02 0.0046 19.2 4.5 25 215-239 8-32 (36)
111 3mq9_A Bone marrow stromal ant 24.7 3E+02 0.01 25.0 8.7 27 215-241 429-455 (471)
112 2zqm_A Prefoldin beta subunit 24.4 1.1E+02 0.0038 22.6 4.8 27 215-241 84-110 (117)
113 2yf2_A C4B binding protein; im 23.9 63 0.0022 22.8 3.0 24 223-246 35-58 (65)
114 3he4_B Synzip5; heterodimeric 23.8 1.4E+02 0.0047 19.7 4.5 24 218-241 6-29 (46)
115 1uii_A Geminin; human, DNA rep 23.3 1.3E+02 0.0046 22.5 4.9 29 214-242 52-80 (83)
116 1x66_A Friend leukemia integra 23.3 82 0.0028 23.8 3.9 57 85-142 16-77 (98)
117 2l5g_A GPS2 protein, G protein 23.2 97 0.0033 20.1 3.5 20 215-234 15-34 (38)
118 3q4f_C DNA repair protein XRCC 23.1 1.1E+02 0.0036 26.3 4.8 29 217-245 156-184 (186)
119 2v71_A Nuclear distribution pr 22.4 1.1E+02 0.0037 26.1 4.8 19 218-236 45-63 (189)
120 3m91_A Proteasome-associated A 22.3 1.6E+02 0.0054 20.0 4.7 10 230-239 38-47 (51)
121 2lw1_A ABC transporter ATP-bin 22.2 1.4E+02 0.0047 21.7 4.8 16 219-234 26-41 (89)
122 1gmj_A ATPase inhibitor; coile 21.9 2.5E+02 0.0087 21.0 6.8 26 211-236 54-79 (84)
123 2z5i_A TM, general control pro 21.8 1.9E+02 0.0065 19.5 6.6 42 203-244 7-48 (52)
124 2v71_A Nuclear distribution pr 21.7 1.1E+02 0.0037 26.1 4.7 18 224-241 90-107 (189)
125 3tnu_B Keratin, type II cytosk 21.7 1.3E+02 0.0044 23.3 4.8 30 216-245 76-105 (129)
126 3mud_A DNA repair protein XRCC 21.2 2E+02 0.007 24.2 6.2 37 206-242 133-169 (175)
127 3tnu_A Keratin, type I cytoske 21.1 1.3E+02 0.0046 23.4 4.8 33 213-245 75-107 (131)
128 2j5u_A MREC protein; bacterial 20.9 95 0.0033 27.0 4.3 25 215-239 36-60 (255)
129 3vmx_A Voltage-gated hydrogen 20.7 2.1E+02 0.007 19.4 6.3 25 218-242 14-38 (48)
130 2jn6_A Protein CGL2762, transp 20.7 6.2 0.00021 28.5 -2.9 20 222-241 66-85 (97)
131 1ik9_A DNA repair protein XRCC 20.6 1E+02 0.0035 26.4 4.3 7 129-135 61-67 (213)
132 1sv0_A ETS DNA-binding protein 20.5 31 0.0011 25.6 0.9 54 87-140 4-60 (85)
133 1t3j_A Mitofusin 1; coiled coi 20.2 2E+02 0.0068 22.0 5.5 35 212-246 61-95 (96)
134 3mud_A DNA repair protein XRCC 20.0 1.3E+02 0.0046 25.3 4.8 16 128-143 63-81 (175)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.62 E-value=9.6e-16 Score=108.81 Aligned_cols=53 Identities=34% Similarity=0.495 Sum_probs=51.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
|+++||++||+||++||.||++|+.+||.+|..|+.+|..|..++..|.++|+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999986
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.40 E-value=5.7e-13 Score=96.42 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=50.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 193 err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
|||++|+++||+||++||.||++|+.+|+.+|..|+.+|..|..+++.|.+++
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999998875
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.34 E-value=1.9e-12 Score=94.11 Aligned_cols=56 Identities=32% Similarity=0.395 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 191 SIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
..++..++..+||+||+|||.||++|+.+||.+|..|+.+|..|..+++.|+++|+
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666677999999999999999999999999999999999999999999875
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.29 E-value=6.6e-12 Score=90.05 Aligned_cols=52 Identities=25% Similarity=0.334 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
||++|+++||+||++||.||++|+.+||.++..|+.+|..|..++..|.++.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999998764
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.21 E-value=3e-11 Score=86.91 Aligned_cols=52 Identities=27% Similarity=0.363 Sum_probs=48.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
|+++|+.+||+||++||.||++|+.+||.+|..|+.+|..|..++..|..+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999999998764
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.94 E-value=1.2e-09 Score=79.17 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=44.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 194 rr~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
|+.+++..||.||+|||.||++++.+|+.++..|+.+|..|+.+++.|..++
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999998764
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.79 E-value=1.4e-08 Score=76.76 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.++.++....|..+|.+||+|||.++++...+++.++..|+.||..|+.+++.|..+.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666679999999999999999999999999999999999999999988764
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.77 E-value=1.5e-08 Score=77.98 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.++.+++...|..+|.+||+|||.++++...+++.++..|+.||..|+.+++.|..+.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777789999999999999999999999999999999999999999998763
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.65 E-value=2.7e-09 Score=85.02 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Q 025871 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVS-------RLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 187 ~~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~-------~Le~eN~~L~~e~~~L~~~y 245 (247)
..+...-|..||.+|||.+|+.||.||.+.+.+||.++. .|..||..|+.++..++.+|
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~ 95 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKY 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556688999999999999999999999999995554 56677777887777777766
No 10
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.36 E-value=1.2e-06 Score=64.89 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=42.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 195 r~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
..||+..||.|++..|.||.+|+.+||.+|..|+.+|..|..++..|+.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~ 57 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQ 57 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999998777777766666654
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.13 E-value=1.3e-05 Score=62.01 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSR-------LEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~~v~~-------Le~eN~~L~~e~~~L~~~y 245 (247)
.+...-|..||.+|||..|+-||.||.....+||.++.. |..||..+.+++..++.+|
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777889999999999999999999999976655 5556666666666666655
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.88 E-value=0.00049 Score=53.26 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARKQAYHNELVS 222 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RKqay~~eLE~ 222 (247)
..-...|..||..|||.+|++||+||.+.+++|+.
T Consensus 56 ~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 56 YQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 34456788999999999999999999999888764
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=95.82 E-value=0.011 Score=39.75 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
|+|+.+||.++..|+..|.+|..++..|..+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999998888888888888887777653
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=95.28 E-value=0.098 Score=37.19 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=34.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 197 RRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 197 rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~ 240 (247)
++..|||.++++||+|=+..++-...-.+.-.+||.+|+--+.+
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~kq 47 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQ 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 45689999999999998888777666556667899998865544
No 15
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=93.95 E-value=0.057 Score=34.48 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+++.||.+|+.|-.+|..|..|++.|++..
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 367899999999999999999999998753
No 16
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=93.76 E-value=0.077 Score=34.05 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++..||.+|+.|-.+|..|..++..|++.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 57899999999999999999999999875
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=93.37 E-value=0.096 Score=34.00 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++++||.+|+.|-.+|..|..+++.|++.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57899999999999999999999999874
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=92.50 E-value=0.1 Score=33.90 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++++||.+|+.|..+|..|..++..|++.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46899999999999999999999998864
No 19
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=92.37 E-value=0.17 Score=32.49 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
+++.||.+|+.|-.+|..|..|++.|++.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57899999999999999999999999874
No 20
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=92.30 E-value=0.012 Score=45.40 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 025871 189 EKSIERRLRRKIKNRESAARSRARKQA 215 (247)
Q Consensus 189 e~~~err~rR~iKNReSA~rSR~RKqa 215 (247)
.-...|..||.-|||.+|++||+||..
T Consensus 61 Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 61 QLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345567889999999999999999853
No 21
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=92.05 E-value=0.19 Score=32.01 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++.||.+|+.|-.+|..|..|++.|++.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6899999999999999999999999874
No 22
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=91.31 E-value=0.23 Score=31.89 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++++.||.+|+.|-.+|..|..|++.|++.
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 357899999999999999999999999874
No 23
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=91.06 E-value=0.26 Score=31.65 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+++.||.+|+.|-.+|..|..|+..|++..
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999998753
No 24
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=90.68 E-value=0.32 Score=30.98 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
+++||.+|+.|-.+|..|..|++.|++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6899999999999999999999998864
No 25
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=90.51 E-value=0.31 Score=31.25 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
+++.||.+|+.|-.+|..|..+++.|++.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57899999999999999999999999864
No 26
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.98 E-value=3.1 Score=32.65 Aligned_cols=29 Identities=34% Similarity=0.332 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
-+.+.+|+.+|..|..||..|+.+++.-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999999987543
No 27
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=85.16 E-value=7.8 Score=28.71 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RK---qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
.++--+||.|--+.=|-|-...|.|- +..+.+|+.+-..|+.+...|..++..|++.|+
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677776555555555555444 457889999999999999999999999998775
No 28
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=84.83 E-value=1.7 Score=27.11 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+..||.+|++-+.||-.|..++..|..++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 35799999999999999999999998765
No 29
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=84.35 E-value=1.3 Score=28.34 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++++||.+|+.|-.+|..|..|+..|++.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47899999999999999999999998864
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=83.77 E-value=7.1 Score=29.53 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RK---qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
.+.--+||.|--+.=|-|-...|.|- +..+.+|+.+-..|+.+...|..|+..|++.|+
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667775555555554444443 457889999999999999999999999987764
No 31
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.60 E-value=2 Score=31.37 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
-..|+..|+.++..|+.+...|+.++..|..+
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999988888888888888888877654
No 32
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=80.88 E-value=2.4 Score=31.27 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 191 SIERRLRRKIKNRESAARSR--------------ARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR--------------~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
..||+.|-.|+.+-.+=++- ..--.|+..|+.++..|+.+|..|+.+++..+.
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34566665666665553321 234589999999999999999999999887653
No 33
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=79.78 E-value=1.9 Score=26.58 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+.|.+-++.|+.||..|+.++++|-.
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999988754
No 34
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.49 E-value=8.9 Score=26.63 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 192 IERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 192 ~err~rR~iKNReSA~rSR~RK---qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
+.||.|-.+.-+.+-.|-..+- ...+.+|+.+...|..+...|..++..|+..++
T Consensus 3 errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444 356778888999999999999999988877653
No 35
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=78.93 E-value=2.8 Score=28.17 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEK 238 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~ 238 (247)
.+..||.+|+.|+.||+.|++++
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 35578999999999999888765
No 36
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=78.85 E-value=3.8 Score=30.23 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
+-.+|+..|+.+...|..++..|++++..|+.+
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999888765
No 37
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.16 E-value=2.4 Score=31.69 Aligned_cols=22 Identities=50% Similarity=0.480 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKK 236 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~ 236 (247)
+.+.+|+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888877764
No 38
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=75.46 E-value=3 Score=28.94 Aligned_cols=30 Identities=3% Similarity=0.083 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++++++...+..|..+|..|+.+++.|.++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577788888889999999999999888764
No 39
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=72.42 E-value=4.6 Score=28.10 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+.|-.+|+.|+.||..|++|++.=.+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 57888999999999999999876443
No 40
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=71.56 E-value=0.07 Score=41.14 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 025871 191 SIERRLRRKIKNRESAARSRARKQ 214 (247)
Q Consensus 191 ~~err~rR~iKNReSA~rSR~RKq 214 (247)
.--+-.||.-|||.+|+.||+||.
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHhhhhHHHHHHcchhhc
Confidence 345678889999999999999874
No 41
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=71.43 E-value=2.2 Score=33.87 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
.-+++|.+++.+|+-||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=69.67 E-value=14 Score=25.86 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
..+.+|+.+...|+.+...|..|+..|++.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777766654
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.52 E-value=8 Score=28.50 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
..|.+.+.+||.++...+.++..|+.++..+++
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 347778999999999999999999999987765
No 44
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.84 E-value=11 Score=25.03 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEK 238 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~ 238 (247)
.....+||.+|+.|+.||.-|++-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3456688888888888888887644
No 45
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=66.18 E-value=11 Score=23.42 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+..|..+++.|++|...|+-++..|+.-|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34567788888888888888888888766
No 46
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.68 E-value=4.5 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e 237 (247)
-..|+..|+.++..|+.++..|+++
T Consensus 55 Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 55 ATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578888888888888888887775
No 47
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=63.53 E-value=14 Score=27.53 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 025871 212 RKQAYHNELVSKVSRL-------EEENLKLKKEKVRIS 242 (247)
Q Consensus 212 RKqay~~eLE~~v~~L-------e~eN~~L~~e~~~L~ 242 (247)
+-..|+..|+.+...| +.+|..|+.+++.|.
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4457888888776654 455555555555543
No 48
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=61.88 E-value=5.7 Score=27.16 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
..|+..|+.++..|+.....|...++
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788899999999988888876553
No 49
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.74 E-value=12 Score=25.77 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKEK 238 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~ 238 (247)
+|..++..|.+++.+|+.++
T Consensus 30 eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 30 EMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 50
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=60.84 E-value=51 Score=24.85 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 203 RESAARSRARKQ--AYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 203 ReSA~rSR~RKq--ay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
++.++....|++ ..+..-..++..|+++...+++.+..|+.
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333334444 44444555677777777777777777754
No 51
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=60.49 E-value=11 Score=28.53 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
...|..+|..|++|+..|+.++++|++
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777765
No 52
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=60.34 E-value=12 Score=29.03 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.+..|..+++.|+.||.+|+++++.|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888777643
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.27 E-value=40 Score=23.09 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
...+..|+.+...|..+...|+.++..|+...+
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445778888999999999999999999887654
No 54
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=57.19 E-value=35 Score=35.93 Aligned_cols=29 Identities=38% Similarity=0.469 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
...++|+.+|+.|++||..|++++++|..
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888899999999888888763
No 55
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=56.35 E-value=35 Score=23.92 Aligned_cols=52 Identities=33% Similarity=0.276 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 188 FEKSIERRLRRKIKNRESAARSRARKQ---AYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 188 ~e~~~err~rR~iKNReSA~rSR~RKq---ay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
.++.+.||.+-.+.-|-|-+|-..+=. ..+.+|+.+...|..+...|+.++.
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666665554443 5667788899999999999988764
No 56
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=56.23 E-value=21 Score=25.84 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
|.+.+.+||..+..-..++.+|+.++..+.+
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999887654
No 57
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=55.47 E-value=41 Score=24.27 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
..+.+|+.....|..||..|+.++..|..+
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678877888888888888888887765
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.96 E-value=15 Score=25.18 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++.|..+++.|+.++..|..++++|+.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666654
No 59
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.27 E-value=16 Score=27.92 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Q 025871 208 RSRARKQAYHNELV----SKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 208 rSR~RKqay~~eLE----~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
|-+-|.+-|...=- .+...|+.++..|..+++.|..+
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e 70 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQE 70 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555544332 23346888888888887777654
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.76 E-value=46 Score=30.60 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 209 SRARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 209 SR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
-|.|.+++++....++.+|+++|++|++++.++..
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 44555666666677777777777777777766543
No 61
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=53.71 E-value=12 Score=27.13 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
....|+.++..|+.+|..|+.++..|.
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444678888899999999998887653
No 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.15 E-value=54 Score=22.70 Aligned_cols=53 Identities=30% Similarity=0.340 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 193 ERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 193 err~rR~iKNReSA~rSR~RK---qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.+++|-.+.-+-+-+|-..+- ...+..|+.+-..|..+...|..++..|+..+
T Consensus 5 rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 5 IRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333 35677888888899999999999998888654
No 63
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.04 E-value=21 Score=26.51 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025871 223 KVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 223 ~v~~Le~eN~~L~~e~~~L 241 (247)
=+..|+.++..|..+++.|
T Consensus 53 YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666655544443333
No 64
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=50.33 E-value=21 Score=26.58 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++.|..++..|++.|..|..|+..|+..
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999864
No 65
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=49.19 E-value=30 Score=22.36 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+.|+..+.+-.++...|+.++.+|.+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45666666666667777777777664
No 66
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.33 E-value=12 Score=22.44 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 025871 227 LEEENLKLKKEKVR 240 (247)
Q Consensus 227 Le~eN~~L~~e~~~ 240 (247)
|+..|.+|+.++..
T Consensus 5 lkqknarlkqeiaa 18 (28)
T 3ra3_B 5 LKQKNARLKQEIAA 18 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHH
Confidence 33444444444433
No 67
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.05 E-value=40 Score=24.75 Aligned_cols=32 Identities=13% Similarity=-0.071 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
|-+.+...+..+..|+.+..+...++..|+.+
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555665555555555555554
No 68
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=46.89 E-value=5.4 Score=29.94 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=10.3
Q ss_pred CchHHHhhhcC
Q 025871 49 MNLDELLKSVW 59 (247)
Q Consensus 49 MNmDElLknIw 59 (247)
||||++|++|-
T Consensus 1 ~~~e~~Lr~IP 11 (79)
T 2p22_D 1 MNVEELLRRIP 11 (79)
T ss_dssp CHHHHHHHHSC
T ss_pred CCHHHHHhcCc
Confidence 89999999985
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.62 E-value=61 Score=25.97 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
++.+.+|+-++..|..+......+++.|+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455777777777776655555555555543
No 70
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.68 E-value=25 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
.+.+|..++.+|.++|.+|+.+-+...++
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578888888888888888887665544
No 71
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=45.30 E-value=12 Score=25.78 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLK 235 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~ 235 (247)
..|+.+||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3788889998888887766554
No 72
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=44.62 E-value=34 Score=21.77 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
.....+..|+.+|..|..++-.|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 45567778888888888777543
No 73
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=42.81 E-value=17 Score=31.89 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=31.7
Q ss_pred hHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 190 KSIERRLRRKI-------KNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 190 ~~~err~rR~i-------KNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++..+|.+|.+ +=|+..----.......+++..++.+|..+|.+++.+++.|+.+
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666553 33444444445555666677778888888888888887777654
No 74
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=41.51 E-value=35 Score=22.98 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 220 LVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+|.+|..|+.-...|....+.|..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLla 26 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLA 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433334333333333
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.18 E-value=43 Score=30.66 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
+++|||.+|..|+.+.+.++.++++++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555555543
No 76
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.17 E-value=29 Score=25.40 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
...|+.+...|..+|..|+.+++.|
T Consensus 56 ~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 56 DRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3466677778888888888877653
No 77
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.98 E-value=25 Score=27.06 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
++..|+.+...|+++...|+.+++.|++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567888888888888888888888765
No 78
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.63 E-value=1.1e+02 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
+.|.+...|..+...|++++++|
T Consensus 49 eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 79
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.16 E-value=60 Score=22.85 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
+.-..|-.+|.+|+..+.+...|++.|..
T Consensus 18 q~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 18 QMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777888888888777777777654
No 80
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.27 E-value=63 Score=21.31 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~ 240 (247)
+.|+++||.+-+.|+.-.+.|+-..++
T Consensus 9 knyiqeleernaelknlkehlkfakae 35 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAKAE 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 568888887777666555555443333
No 81
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=38.76 E-value=9.6 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.8
Q ss_pred cccccccccccCCchhhhhHHH
Q 025871 84 QASLTLARALSGKTVEQVWNEI 105 (247)
Q Consensus 84 QgS~tlp~~ls~KTVdEVWkdI 105 (247)
|..+++-++||+.|..+.|+-+
T Consensus 5 qsd~siepPLSQETFsdLW~LL 26 (39)
T 2k8f_B 5 QSDPSVEPPLSQETFSDLWKLL 26 (39)
T ss_dssp CCCSSCCCCCSCHHHHHHHHTC
T ss_pred ccccccCCCccHHHHHHHHHhC
Confidence 3446777889999999999955
No 82
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=38.37 E-value=41 Score=19.99 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
+-.|..+|-.|+-|...|+.++..|
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 3456666777777777777666655
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.30 E-value=1.5e+02 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 025871 223 KVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 223 ~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
++..|++|+..+++++.+|.++
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666655543
No 84
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=35.96 E-value=50 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
.|+.+++.|+.+-..|..+++.+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 85
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.77 E-value=30 Score=26.00 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025871 222 SKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 222 ~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.+|..||.+|..|..++..+..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3577788888888777776654
No 86
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.42 E-value=1.7e+02 Score=23.36 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
..+..+++++.++..|++++..|.+++..|.
T Consensus 100 ~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 100 AAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666655553
No 87
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=34.63 E-value=18 Score=23.40 Aligned_cols=19 Identities=37% Similarity=0.298 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025871 222 SKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 222 ~~v~~Le~eN~~L~~e~~~ 240 (247)
.+|..|+.+|..|..++..
T Consensus 20 dkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4688899999999988753
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.51 E-value=1.6e+02 Score=27.40 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEE 230 (247)
Q Consensus 215 ay~~eLE~~v~~Le~e 230 (247)
+..+.|+.++..++..
T Consensus 537 ~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 537 KETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHH
Confidence 3334334444444443
No 89
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=34.41 E-value=41 Score=29.32 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e 237 (247)
+..|+.+++.|+++|..|+.-
T Consensus 124 ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555554443
No 90
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=34.20 E-value=35 Score=29.26 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e 237 (247)
.+.+|+++..+|.+||++|.++
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4557777777777777777765
No 91
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.93 E-value=42 Score=25.31 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKK 236 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~ 236 (247)
+..++.++..|+++|..|+.
T Consensus 47 ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555443
No 92
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.23 E-value=65 Score=24.06 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025871 220 LVSKVSRLEEENLKLKKEKVR 240 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~~ 240 (247)
|..+++.|+++|..|..++++
T Consensus 25 LqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444
No 93
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=33.04 E-value=1.2e+02 Score=21.85 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 210 RARKQAYHNELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 210 R~RKqay~~eLE~~v~~Le~eN~~L~~e 237 (247)
|...+..+..||.++.+++.+-+...++
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~E 34 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDE 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444443333
No 94
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=33.00 E-value=32 Score=27.39 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
+|..+|..|.+++..|+++++.|+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 95
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=32.21 E-value=1.4e+02 Score=23.17 Aligned_cols=53 Identities=23% Similarity=0.245 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 025871 190 KSIERRLRRKIKNRESAARSR-----------------ARKQAYHNELVSKVSRLEE----------ENLKLKKEKVRIS 242 (247)
Q Consensus 190 ~~~err~rR~iKNReSA~rSR-----------------~RKqay~~eLE~~v~~Le~----------eN~~L~~e~~~L~ 242 (247)
...||+.|-.|+.+..+=++= .+--.|+..|+.++..|++ .|..|...+++|.
T Consensus 32 n~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 32 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777788877664431 1234788889887776654 3556666555553
No 96
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=31.85 E-value=26 Score=22.66 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=14.3
Q ss_pred hhHHHHhhhcccccccCCC
Q 025871 130 TLEDFLVQAGLFAEASVSP 148 (247)
Q Consensus 130 TLEDFLvrAGvv~e~~~~p 148 (247)
.|.+||.|+|.+-...-.|
T Consensus 11 rla~~LsrSg~~~~~nf~P 29 (37)
T 2g48_C 11 RLANFLVHSSNNFGAILSS 29 (37)
T ss_pred HHHHHHHhhccccccccCC
Confidence 5899999999876554444
No 97
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.67 E-value=86 Score=23.26 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
.+..|..++..|+.+...|..++.
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 98
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.66 E-value=73 Score=25.57 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 025871 226 RLEEENLKLKKEKVRI 241 (247)
Q Consensus 226 ~Le~eN~~L~~e~~~L 241 (247)
.++.++.+|++++..|
T Consensus 107 ~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 107 SSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.61 E-value=1.9e+02 Score=26.44 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 202 NRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 202 NReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
-|+-+.+--+..+..++.|+.+-+.|+.++.++..++++.+..|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 34445566677788888888888899999999988888888776
No 100
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.25 E-value=46 Score=19.93 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025871 220 LVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 220 LE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
||-+-..|+.....|+.++..|+
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 44444455555555555555544
No 101
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=30.09 E-value=65 Score=27.39 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
++++.-+=..+..|+.+|..|.++++.|+.++
T Consensus 144 ~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 144 RELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888888888888887653
No 102
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=28.50 E-value=90 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
.+.+.+.+.+...|+..|..|...+++|..
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 355667788888899999999988888753
No 103
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=27.43 E-value=19 Score=25.38 Aligned_cols=10 Identities=60% Similarity=1.039 Sum_probs=8.9
Q ss_pred cCCchhhhhH
Q 025871 94 SGKTVEQVWN 103 (247)
Q Consensus 94 s~KTVdEVWk 103 (247)
..||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 5899999996
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.35 E-value=1.3e+02 Score=35.68 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 204 ESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 204 eSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
..|...=+.+++.+.+|+.+++.|+.+.+++.+|.+.|+.+
T Consensus 2024 ~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667777777777777777776666666655543
No 105
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.73 E-value=2.7e+02 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 219 ELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.|..++..++.....|+.|+..|.+++
T Consensus 107 aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 107 SGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666665554
No 106
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.60 E-value=2.8e+02 Score=23.16 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=23.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 196 LRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (247)
Q Consensus 196 ~rR~iKNReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e 237 (247)
...+..--+.-++.|.+-.+.+.+|+.++..|..|...++..
T Consensus 71 ~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 71 YYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555666666666666666666665555554443
No 107
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.60 E-value=54 Score=24.43 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
.+..+..++..|+++|..|+.-..
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666655544433
No 108
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.43 E-value=1.9e+02 Score=21.24 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKKEKVRISS 243 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~ 243 (247)
..=+..++.|..+|..|.-.++.+..+++.+.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445567778888888888888888887777765
No 109
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=25.30 E-value=72 Score=21.09 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025871 217 HNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
-++||.++..|+.....|...++
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666655555555443
No 110
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.18 E-value=1.4e+02 Score=19.20 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
..+++|..+...|+.|-.+|+..+.
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3456677777777777777766554
No 111
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.72 E-value=3e+02 Score=24.96 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
..+..||.++++-++..++|..|+..|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667766665444444444444443
No 112
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.36 E-value=1.1e+02 Score=22.55 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
..+..|+.++..++.+...|+.++..+
T Consensus 84 ~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 84 VRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 113
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=23.90 E-value=63 Score=22.80 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Q 025871 223 KVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 223 ~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
++.+|=-|.++|+.|+..|..+|+
T Consensus 35 Ei~KL~LEIQKL~~EL~glskefl 58 (65)
T 2yf2_A 35 EIRKLFLEIQKLKVELQGLSKEFL 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcchhHHHH
Confidence 444566677888888888888775
No 114
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.81 E-value=1.4e+02 Score=19.65 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L 241 (247)
.+|..-+..|++.|.+|+.-.+.|
T Consensus 6 kelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHH
Confidence 455555666666666665544433
No 115
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.35 E-value=1.3e+02 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 214 QAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 214 qay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
...+..|+.+++.|+++|..|+.-.+.+.
T Consensus 52 h~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 52 HKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999987665543
No 116
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.26 E-value=82 Score=23.83 Aligned_cols=57 Identities=19% Similarity=0.124 Sum_probs=33.5
Q ss_pred ccccccccccCCchhhhhHHHHhccccccCccccccCCC-C----CcccchhHHHHhhhcccc
Q 025871 85 ASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQRE-P----TLGELTLEDFLVQAGLFA 142 (247)
Q Consensus 85 gS~tlp~~ls~KTVdEVWkdI~~~~~~~~~~~~~~~~~q-~----tlgemTLEDFLvrAGvv~ 142 (247)
.-+-+|.....=|.+.|+.=|.-......-.... ..+- . .|=.||.|||+.+++.+.
T Consensus 16 ~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~-~~~F~~m~G~~LC~ls~edF~~~~~~~~ 77 (98)
T 1x66_A 16 RRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEID-TSFFQNMDGKELCKMNKEDFLRATTLYN 77 (98)
T ss_dssp SCCCCCSSGGGCCTTHHHHHHHHHHHHTTCCSCC-GGGGTTCCHHHHHHCCHHHHHTTSCHHH
T ss_pred eecCCCCChhhcCHHHHHHHHHHHHHhcCCCCCC-hhhCCCCCHHHHHcCCHHHHHHHcCCCc
Confidence 3456777777888899988776433221111111 1111 2 344599999999987543
No 117
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.15 E-value=97 Score=20.09 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKL 234 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L 234 (247)
+.+..|+.++..|++|...|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444
No 118
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=23.05 E-value=1.1e+02 Score=26.26 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 217 HNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 217 ~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
+.-.=.+++.|+.+|..|.+|++.|..++
T Consensus 156 i~~~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 156 ICYCLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33455689999999999999999998764
No 119
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.40 E-value=1.1e+02 Score=26.07 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025871 218 NELVSKVSRLEEENLKLKK 236 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~ 236 (247)
.+||.++..+++.|..|+.
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~ 63 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQA 63 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333
No 120
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.28 E-value=1.6e+02 Score=20.00 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 025871 230 ENLKLKKEKV 239 (247)
Q Consensus 230 eN~~L~~e~~ 239 (247)
+...|+.+++
T Consensus 38 el~~Lkeele 47 (51)
T 3m91_A 38 QLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 121
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.16 E-value=1.4e+02 Score=21.74 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 025871 219 ELVSKVSRLEEENLKL 234 (247)
Q Consensus 219 eLE~~v~~Le~eN~~L 234 (247)
.|+.+++.|+.+...|
T Consensus 26 ~le~~Ie~LE~~i~~l 41 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEAL 41 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 122
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.90 E-value=2.5e+02 Score=20.98 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 211 ARKQAYHNELVSKVSRLEEENLKLKK 236 (247)
Q Consensus 211 ~RKqay~~eLE~~v~~Le~eN~~L~~ 236 (247)
...+..+..||.++...+.....|+.
T Consensus 54 ~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 54 SHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555666666666666555555543
No 123
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.78 E-value=1.9e+02 Score=19.46 Aligned_cols=42 Identities=10% Similarity=-0.004 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025871 203 RESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRISSM 244 (247)
Q Consensus 203 ReSA~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~ 244 (247)
=+-|-||=.|-+.-++.||.++..-+.++..+..++...-.+
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~e 48 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALND 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888888788888888777665443
No 124
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.68 E-value=1.1e+02 Score=26.10 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025871 224 VSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 224 v~~Le~eN~~L~~e~~~L 241 (247)
+..|+.+...|+..+..|
T Consensus 90 ~~~Lq~el~~l~~~~~~l 107 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQL 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 125
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.67 E-value=1.3e+02 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 216 YHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 216 y~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
.+..+...+..|+.+...++.+.+....+|
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444566677777777777766655555
No 126
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.16 E-value=2e+02 Score=24.20 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 206 AARSRARKQAYHNELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 206 A~rSR~RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
|-++-.+-++.++.||.++...+++|..+.++++..-
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888999999999998888888876543
No 127
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.10 E-value=1.3e+02 Score=23.36 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025871 213 KQAYHNELVSKVSRLEEENLKLKKEKVRISSMF 245 (247)
Q Consensus 213 Kqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y 245 (247)
-...+..+...+..|+.+...++.+.+....+|
T Consensus 75 ~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 75 YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555667777777777777776665555
No 128
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.92 E-value=95 Score=26.95 Aligned_cols=25 Identities=32% Similarity=0.299 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 215 AYHNELVSKVSRLEEENLKLKKEKV 239 (247)
Q Consensus 215 ay~~eLE~~v~~Le~eN~~L~~e~~ 239 (247)
+.+.....++..|+.||.+|++.+.
T Consensus 36 ~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 36 EELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555667778888888887654
No 129
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.72 E-value=2.1e+02 Score=19.44 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025871 218 NELVSKVSRLEEENLKLKKEKVRIS 242 (247)
Q Consensus 218 ~eLE~~v~~Le~eN~~L~~e~~~L~ 242 (247)
..|-.+|..|+....++.+|++.|+
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3455555555555555555555443
No 130
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=20.72 E-value=6.2 Score=28.52 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025871 222 SKVSRLEEENLKLKKEKVRI 241 (247)
Q Consensus 222 ~~v~~Le~eN~~L~~e~~~L 241 (247)
.++..|+.||..|+.+++.|
T Consensus 66 ~ei~~L~~e~~~L~~e~~~L 85 (97)
T 2jn6_A 66 EQIRQLKKENALQRARTRHP 85 (97)
T ss_dssp HHHHHHHHCGGGGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665555444
No 131
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.58 E-value=1e+02 Score=26.44 Aligned_cols=7 Identities=0% Similarity=0.344 Sum_probs=3.3
Q ss_pred chhHHHH
Q 025871 129 LTLEDFL 135 (247)
Q Consensus 129 mTLEDFL 135 (247)
|+.|+|+
T Consensus 61 ~~~eey~ 67 (213)
T 1ik9_A 61 MEKGKYV 67 (213)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 4444453
No 132
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=20.52 E-value=31 Score=25.63 Aligned_cols=54 Identities=15% Similarity=-0.058 Sum_probs=30.6
Q ss_pred ccccccccCCchhhhhHHHHhccccccCccccc---cCCCCCcccchhHHHHhhhcc
Q 025871 87 LTLARALSGKTVEQVWNEIQQGQKKRYGQEMKS---HQREPTLGELTLEDFLVQAGL 140 (247)
Q Consensus 87 ~tlp~~ls~KTVdEVWkdI~~~~~~~~~~~~~~---~~~q~tlgemTLEDFLvrAGv 140 (247)
+.+|.....=|.+.|+.=|.-......-..... +-.-..|=.||.|||+.+++.
T Consensus 4 ~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 4 PSLPSDPRLWSREDVLVFLRFCVREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TTSCSSGGGCCHHHHHHHHHHHHHHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHccCCCCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 346666677788888876664322111111111 011123556999999999873
No 133
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.25 E-value=2e+02 Score=22.03 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 025871 212 RKQAYHNELVSKVSRLEEENLKLKKEKVRISSMFL 246 (247)
Q Consensus 212 RKqay~~eLE~~v~~Le~eN~~L~~e~~~L~~~y~ 246 (247)
++-+.++.+..+...|+.+-.-|..+++...+.||
T Consensus 61 ~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~yL 95 (96)
T 1t3j_A 61 KEIDQLEKMQNNSKLLRNKAVQLESELENFSKQFL 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667777778888888888889999999999887
No 134
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.03 E-value=1.3e+02 Score=25.34 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=10.5
Q ss_pred cchhHHH---Hhhhccccc
Q 025871 128 ELTLEDF---LVQAGLFAE 143 (247)
Q Consensus 128 emTLEDF---LvrAGvv~e 143 (247)
+|-+|-| |+||-+...
T Consensus 63 ~me~e~Yv~el~kAl~~~~ 81 (175)
T 3mud_A 63 AMEKGKYVGELRKALLSGA 81 (175)
T ss_dssp TCCHHHHHHHHHHHHTTCC
T ss_pred cCcHHHHHHHHHHHHhcCC
Confidence 3667766 778876553
Done!