Query 025872
Match_columns 247
No_of_seqs 155 out of 635
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4561 Uncharacterized conser 100.0 1.3E-37 2.8E-42 272.6 -1.4 227 7-239 2-235 (281)
2 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 9.3E-29 2E-33 207.1 15.2 161 72-233 1-164 (198)
3 smart00724 TLC TRAM, LAG1 and 100.0 9.2E-28 2E-32 203.6 14.4 164 68-235 1-166 (205)
4 KOG4474 Uncharacterized conser 99.9 7.1E-27 1.5E-31 201.0 9.6 171 64-239 37-208 (253)
5 COG5058 LAG1 Protein transport 96.7 0.0029 6.3E-08 57.0 5.4 156 66-225 150-311 (395)
6 KOG1607 Protein transporter of 95.6 0.38 8.2E-06 43.8 13.3 163 61-226 77-242 (318)
7 PF02674 Colicin_V: Colicin V 49.6 1E+02 0.0022 24.0 7.4 82 7-95 35-117 (146)
8 PF06423 GWT1: GWT1; InterPro 27.3 1.4E+02 0.003 23.6 4.8 45 37-81 5-49 (136)
9 PF06716 DUF1201: Protein of u 24.4 2.1E+02 0.0045 18.6 5.2 33 199-231 6-38 (54)
10 PF12650 DUF3784: Domain of un 22.4 1.2E+02 0.0026 22.2 3.4 37 59-95 23-59 (97)
11 COG3311 AlpA Predicted transcr 21.4 62 0.0013 22.9 1.5 29 176-204 6-34 (70)
No 1
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=272.64 Aligned_cols=227 Identities=34% Similarity=0.550 Sum_probs=189.8
Q ss_pred hHHHHhhcHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHH---HHhhhhhhhcccCCCccccceee-ehhhHHHH
Q 025872 7 TVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLT---QLISTFYFKAYNGLTKIQRMEWN-NRGISTVH 82 (247)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~s~~~~~~i~~ls---~~ls~~~~k~y~~Ls~~~k~~w~-~r~vS~vH 82 (247)
++.+.+++..+.+.++++...++++..+......+++|+..|.++ +..+....++|.++++++|++|| +|+||++|
T Consensus 2 ~i~~~~~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~h 81 (281)
T KOG4561|consen 2 VIPMLPARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVH 81 (281)
T ss_pred CCCCCCCcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeeh
Confidence 456778899999999999999999999999999999999999988 77777777899999999999999 99999999
Q ss_pred HHHHHHHHHHHHhhcCCCC-CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhHhh
Q 025872 83 AIFITALSLYYVFWSDLFS-DQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYS 161 (247)
Q Consensus 83 Aiv~~~~a~~~l~~~~~~~-~~~~~d~v~~~~s~~~~~~~~is~GYFl~Dl~~~l~~~~~~~~~~~llHH~~~l~~~~~~ 161 (247)
+++++ ++|+++.++.+. |....+.+.+..+...... .|||++|+..+.++++..+|.+|++||++++......
T Consensus 82 slv~~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~ 155 (281)
T KOG4561|consen 82 SLVSS--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCL 155 (281)
T ss_pred Hhhhc--ccceeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheee
Confidence 99998 889888776554 4443333324433333222 5699999986777788899999999999994444444
Q ss_pred hccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--hhcCCcccccc
Q 025872 162 MFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVY--LHYDQWDYPII 239 (247)
Q Consensus 162 l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~g~~~s~~y~~N~~l~~~tFf~~Ri~~~~~~~~~~~--~~~~~v~~~~~ 239 (247)
+..|.++++++.+|++|+||||+|+||+++++|+|+|++|++||++++++||++||+..+++.++++ .+..++++..+
T Consensus 156 ~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~ 235 (281)
T KOG4561|consen 156 LRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPP 235 (281)
T ss_pred EecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhch
Confidence 5678899999999999999999999999999999999999999999999999999998889999888 44455555443
No 2
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.96 E-value=9.3e-29 Score=207.06 Aligned_cols=161 Identities=34% Similarity=0.599 Sum_probs=137.2
Q ss_pred eeeehhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHhccCCCC-hhHHHH
Q 025872 72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGG-MEYVVH 150 (247)
Q Consensus 72 ~w~~r~vS~vHAiv~~~~a~~~l~~~~~~~~~~~~d~v~~~~s~~~~~~~~is~GYFl~Dl~~~l~~~~~~~~-~~~llH 150 (247)
||++|++|++||++++.+|++++..++.+.++.. |....++++..+...++++|||++|+.+++.+.+..+| .++++|
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H 79 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWP-DDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH 79 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcc-cCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence 6999999999999999999999987642211222 33324456677789999999999999999986654443 899999
Q ss_pred HHHHHHHhHhhhccCCchhHHHHHHHHhhcchhhhHHHHHHHc-CC-CCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025872 151 HSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTA-GM-KRSTTYLVNGVIIFFAWLIARILLFVYMFYHVY 228 (247)
Q Consensus 151 H~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~-g~-~~s~~y~~N~~l~~~tFf~~Ri~~~~~~~~~~~ 228 (247)
|++++.++..+...+.+.+++..+++.|+||||+|+||++++. |. ++++.+.+|+++++++|+++|++.+|+..++.+
T Consensus 80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~ 159 (198)
T PF03798_consen 80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY 159 (198)
T ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888887888999999999999999999999999999 77 688999999999999999999999999988888
Q ss_pred hhcCC
Q 025872 229 LHYDQ 233 (247)
Q Consensus 229 ~~~~~ 233 (247)
.+..+
T Consensus 160 ~~~~~ 164 (198)
T PF03798_consen 160 WDVWP 164 (198)
T ss_pred HHhcc
Confidence 77654
No 3
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.95 E-value=9.2e-28 Score=203.59 Aligned_cols=164 Identities=29% Similarity=0.400 Sum_probs=142.0
Q ss_pred cccceeeehhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHhccCCC--Ch
Q 025872 68 IQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG--GM 145 (247)
Q Consensus 68 ~~k~~w~~r~vS~vHAiv~~~~a~~~l~~~~~~~~~~~~d~v~~~~s~~~~~~~~is~GYFl~Dl~~~l~~~~~~~--~~ 145 (247)
+|+.||++|++|.+||++++..+++.... +.++..+|+. .+.++..+...++++|||++|+.++..+.+..+ ++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~ 76 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK 76 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 47889999999999999999998877652 1122233555 678999999999999999999999986554433 79
Q ss_pred hHHHHHHHHHHHhHhhhccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 025872 146 EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFY 225 (247)
Q Consensus 146 ~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~g~~~s~~y~~N~~l~~~tFf~~Ri~~~~~~~~ 225 (247)
++++||++++.++..+...+....++...++.|+||||+|+||++++.|.++++++.+|+.+++++|+++|++++|+..+
T Consensus 77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~ 156 (205)
T smart00724 77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLIL 156 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888788888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcc
Q 025872 226 HVYLHYDQWD 235 (247)
Q Consensus 226 ~~~~~~~~v~ 235 (247)
..+.+.++..
T Consensus 157 ~~~~~~~~~~ 166 (205)
T smart00724 157 TVTVHYAQAE 166 (205)
T ss_pred HHHhhhhhhh
Confidence 9888876543
No 4
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=7.1e-27 Score=201.04 Aligned_cols=171 Identities=21% Similarity=0.279 Sum_probs=149.6
Q ss_pred CCCccccceeeehhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 025872 64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG 143 (247)
Q Consensus 64 ~Ls~~~k~~w~~r~vS~vHAiv~~~~a~~~l~~~~~~~~~~~~d~v~~~~s~~~~~~~~is~GYFl~Dl~~~l~~~~~~~ 143 (247)
.++..+|.+|.|+.||++||++++..+.+++..+ ++...|++ ...+..+..+.++|+|||++|+++|..+.....
T Consensus 37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~----~~~~~~~~-~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~ 111 (253)
T KOG4474|consen 37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYD----PEMVDDPI-TYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL 111 (253)
T ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhC----cccccCHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 4677779999999999999999999999999864 24455666 456788999999999999999999998765556
Q ss_pred ChhHHHHHHHHHHHhHhhhccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHhHHHH
Q 025872 144 GMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRS-TTYLVNGVIIFFAWLIARILLFVY 222 (247)
Q Consensus 144 ~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~g~~~s-~~y~~N~~l~~~tFf~~Ri~~~~~ 222 (247)
.+++++||++++.++..+++++++..++.+.+++|+||||+|+|.+++.+|.+++ +.++++..++.++||++|++...|
T Consensus 112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~~~ 191 (253)
T KOG4474|consen 112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQIY 191 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcccee
Confidence 7999999999999999999999988899999999999999999999999998654 469999999999999999999999
Q ss_pred HHHHHHhhcCCcccccc
Q 025872 223 MFYHVYLHYDQWDYPII 239 (247)
Q Consensus 223 ~~~~~~~~~~~v~~~~~ 239 (247)
+.++...+.+..+....
T Consensus 192 l~~~~i~~~~~~~~~~~ 208 (253)
T KOG4474|consen 192 LTYFLIANAPFLHWYLK 208 (253)
T ss_pred EEEEEeeeCCCcceehh
Confidence 99988887766555443
No 5
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=96.70 E-value=0.0029 Score=57.04 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=100.3
Q ss_pred CccccceeeehhhHHHHHHHHHHHHHHHHhhcCCCC---CCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHh--c
Q 025872 66 TKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFS---DQQHTG-PITFRSSWLSNFGLGVSVGYFLADLGMIFWL--Y 139 (247)
Q Consensus 66 s~~~k~~w~~r~vS~vHAiv~~~~a~~~l~~~~~~~---~~~~~d-~v~~~~s~~~~~~~~is~GYFl~Dl~~~l~~--~ 139 (247)
++++..+.+...-+..--.+++..|+|++..+|.|. ++..++ |+ +++.+.-...-.+-.||-+....+.+.+ .
T Consensus 150 s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqaafw~qQa~ilvLqlEk 228 (395)
T COG5058 150 SEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQAAFWAQQACILVLQLEK 228 (395)
T ss_pred CHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHHHHHHHHHhhheeeecc
Confidence 444447888888888888999999999988766542 111111 33 4555555666667788888885554443 3
Q ss_pred cCCCChhHHHHHHHHHHHhHhhhccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHhH
Q 025872 140 PSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILL 219 (247)
Q Consensus 140 ~~~~~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~g~~~s~~y~~N~~l~~~tFf~~Ri~~ 219 (247)
|...-++++.||++.++-...+...++.-...+....+.+|-|||.+...+.-.|- ...+.+. .+++..|+-.|-.+
T Consensus 229 prkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~--~l~~~iF-~iFv~~wIysRHyl 305 (395)
T COG5058 229 PRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS--VLATFIF-GIFVFIWIYSRHYL 305 (395)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc--hhHHHHH-HHHHHHHHHHHHHH
Confidence 34445789999999877654443222222223344588999999999988876664 3444444 45788888888444
Q ss_pred HHHHHH
Q 025872 220 FVYMFY 225 (247)
Q Consensus 220 ~~~~~~ 225 (247)
..-..+
T Consensus 306 n~kIlw 311 (395)
T COG5058 306 NLKILW 311 (395)
T ss_pred HHHHHH
Confidence 433333
No 6
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.38 Score=43.77 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=101.5
Q ss_pred cccCCCccccceeeehhhHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCCccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 025872 61 AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQ---QHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFW 137 (247)
Q Consensus 61 ~y~~Ls~~~k~~w~~r~vS~vHAiv~~~~a~~~l~~~~~~~~~---~~~d~v~~~~s~~~~~~~~is~GYFl~Dl~~~l~ 137 (247)
.++.-+++++.+.....=..+--.++.+.|++++..++=+.+. +.+-|. ....+.-...-.+-+|+-..-++.+..
T Consensus 77 ~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~~ 155 (318)
T KOG1607|consen 77 RLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALFL 155 (318)
T ss_pred hcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4444444445667777777777788888888888763211111 011111 223445556667778887777777765
Q ss_pred hccCCCChhHHHHHHHHHHHhHhhhccCCchhHHHHHHHHhhcchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHH
Q 025872 138 LYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARI 217 (247)
Q Consensus 138 ~~~~~~~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~g~~~s~~y~~N~~l~~~tFf~~Ri 217 (247)
......-+++.+||+++++-...+...+..-.......+...|-++|-+..+++-.+.+ .+-...-+++...|+..|+
T Consensus 156 d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL 233 (318)
T KOG1607|consen 156 DEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRL 233 (318)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHH
Confidence 54444457899999998766544443332222333445888999999988776554443 4444445678899999997
Q ss_pred hHHHHHHHH
Q 025872 218 LLFVYMFYH 226 (247)
Q Consensus 218 ~~~~~~~~~ 226 (247)
...|....+
T Consensus 234 ~~~p~wil~ 242 (318)
T KOG1607|consen 234 IYYPFWILR 242 (318)
T ss_pred HHHHHHHHH
Confidence 777754443
No 7
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=49.62 E-value=1e+02 Score=23.95 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=41.6
Q ss_pred hHHHHhhcHHHHHHHhhhh-ccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccccceeeehhhHHHHHHH
Q 025872 7 TVTAIKSYQNQAQVLVKNY-IIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIF 85 (247)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~i~~s~~~~~~i~~ls~~ls~~~~k~y~~Ls~~~k~~w~~r~vS~vHAiv 85 (247)
-+.|.+-|++..+...+.. ..+++.. .+++-++.+.+.+.+.+.+.+ .-++..++++.++-||....+=+.+
T Consensus 35 ~~~a~~~~~~~~~~l~~~~~~~~~~~~---~~iaf~~~f~~~~~i~~~i~~----~l~~~~~~~~~~~~dr~lG~~~G~~ 107 (146)
T PF02674_consen 35 LFVAFLFYPPLAPFLSNYFSSLSPPFA---NIIAFIILFVLVYIIVRIIGK----LLRRIVKKPFLGWLDRLLGALLGLA 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHhhcccccHHHHHHHHHHHHH
Confidence 3456666666666666543 2222221 122222222233333333333 2223335567778888888877777
Q ss_pred HHHHHHHHHh
Q 025872 86 ITALSLYYVF 95 (247)
Q Consensus 86 ~~~~a~~~l~ 95 (247)
.+..-.+.+.
T Consensus 108 ~~~li~~~~~ 117 (146)
T PF02674_consen 108 KGLLILSLLL 117 (146)
T ss_pred HHHHHHHHHH
Confidence 7766655443
No 8
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=27.32 E-value=1.4e+02 Score=23.58 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCCCccccceeeehhhHHH
Q 025872 37 ILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTV 81 (247)
Q Consensus 37 i~~s~~~~~~i~~ls~~ls~~~~k~y~~Ls~~~k~~w~~r~vS~v 81 (247)
=+.|+..|..+|.++..+.+.+++.-+....+++.+|-.......
T Consensus 5 Gi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~ 49 (136)
T PF06423_consen 5 GIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLL 49 (136)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHH
Confidence 357899999999998888776664443332344445555544443
No 9
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=24.38 E-value=2.1e+02 Score=18.61 Aligned_cols=33 Identities=15% Similarity=0.432 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 025872 199 TTYLVNGVIIFFAWLIARILLFVYMFYHVYLHY 231 (247)
Q Consensus 199 ~~y~~N~~l~~~tFf~~Ri~~~~~~~~~~~~~~ 231 (247)
+.|...+..+++.||++=.+...+..|+-...+
T Consensus 6 Rs~L~~~F~~lIC~Fl~~~~~F~~F~~Kqilfr 38 (54)
T PF06716_consen 6 RSYLLLAFGFLICLFLFCLVVFIWFVYKQILFR 38 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457778889999999988888888888754443
No 10
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=22.40 E-value=1.2e+02 Score=22.18 Aligned_cols=37 Identities=11% Similarity=0.398 Sum_probs=27.7
Q ss_pred hhcccCCCccccceeeehhhHHHHHHHHHHHHHHHHh
Q 025872 59 FKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVF 95 (247)
Q Consensus 59 ~k~y~~Ls~~~k~~w~~r~vS~vHAiv~~~~a~~~l~ 95 (247)
-.+|+.+|++||.+.|.+-.+-.-+......|+..+.
T Consensus 23 IaGyntms~eEk~~~D~~~l~r~~g~~~~~~~i~~li 59 (97)
T PF12650_consen 23 IAGYNTMSKEEKEKYDKKKLCRFMGKFMLIIGIILLI 59 (97)
T ss_pred hhhcccCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999877776666666666654443
No 11
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=21.35 E-value=62 Score=22.89 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.6
Q ss_pred HHhhcchhhhHHHHHHHcCCCCChHHHHH
Q 025872 176 ISEVTTPEINMRWYLDTAGMKRSTTYLVN 204 (247)
Q Consensus 176 l~ElSTPFLnlRw~L~~~g~~~s~~y~~N 204 (247)
.++.+++++.++..++++|+..+.+|+..
T Consensus 6 ~~~~~~r~lrl~ev~~~~GlSrstiYr~i 34 (70)
T COG3311 6 EMRHTDRLLRLPEVAQLTGLSRSTIYRLI 34 (70)
T ss_pred cccccchhhhHHHHHHHHCccHHHHHHHH
Confidence 35678899999999999999988888753
Done!