Query 025872
Match_columns 247
No_of_seqs 155 out of 635
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 19:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9p_A Pheromone alpha factor 13.3 1.3E+02 0.0045 20.7 2.7 28 188-219 40-67 (80)
2 2ls4_A High affinity copper up 7.5 1.4E+02 0.0047 16.1 0.0 13 119-131 9-21 (26)
3 1td6_A F10_ORF294, hypothetica 4.7 1E+03 0.034 20.0 4.9 49 17-69 74-122 (306)
4 3vgx_C Envelope glycoprotein G 3.7 3.7E+02 0.013 15.8 1.0 12 5-16 26-37 (40)
5 2lx0_A Membrane fusion protein 3.4 7.1E+02 0.024 13.5 4.4 24 196-219 2-25 (32)
6 2dpr_A CON-T(K7GLA); conantoxi 3.3 6.1E+02 0.021 13.1 1.5 12 12-23 3-14 (26)
7 2kyg_C Protein CBFA2T1; protei 3.3 6.7E+02 0.023 14.5 1.8 15 7-21 20-34 (38)
8 2jp3_A FXYD domain-containing 3.0 1.1E+03 0.037 15.5 2.9 26 71-96 12-38 (67)
9 3vh7_A Envelope glycoprotein G 2.8 5E+02 0.017 16.6 1.0 12 5-16 43-54 (58)
10 1i11_A Transcription factor SO 2.8 4.1E+02 0.014 17.3 0.6 21 54-74 35-55 (81)
No 1
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=13.35 E-value=1.3e+02 Score=20.70 Aligned_cols=28 Identities=21% Similarity=0.576 Sum_probs=20.6
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHhH
Q 025872 188 WYLDTAGMKRSTTYLVNGVIIFFAWLIARILL 219 (247)
Q Consensus 188 w~L~~~g~~~s~~y~~N~~l~~~tFf~~Ri~~ 219 (247)
|++-| .|.++++.+|+..+++. +.|.+.
T Consensus 40 ~lltk--krrspiF~lN~~~L~l~--iirs~l 67 (80)
T 2k9p_A 40 WITSR--SRKTPIFIINQVSLFLI--ILHSAL 67 (80)
T ss_dssp HHHTC--CSCCCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHhc--cccChhhHHHHHHHHHH--HHHHHH
Confidence 55544 67899999999998876 456554
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=7.51 E-value=1.4e+02 Score=16.13 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 025872 119 FGLGVSVGYFLAD 131 (247)
Q Consensus 119 ~~~~is~GYFl~D 131 (247)
.++.-.+|||+++
T Consensus 9 vvlGa~~Gyf~F~ 21 (26)
T 2ls4_A 9 VAAGAGTGYFLFS 21 (26)
Confidence 3456677888764
No 3
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=4.71 E-value=1e+03 Score=20.03 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=28.1
Q ss_pred HHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccc
Q 025872 17 QAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQ 69 (247)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~i~~s~~~~~~i~~ls~~ls~~~~k~y~~Ls~~~ 69 (247)
.+++..++ .++.|++|.+.+- + |-++.+.+++.+--.-+..+.+|++++
T Consensus 74 ~Ale~~eE-ELdtpYlp~~lv~--~-Fqsl~~~v~~~Lyene~~~lesL~~ee 122 (306)
T 1td6_A 74 TAQSRCEE-ELAAPYLPKPLVS--F-FQSLLQLVNHDLLEQQNAALASLPAAK 122 (306)
T ss_dssp HHHHHHHH-HTTCTTSCHHHHH--H-HHHHHHHHHHHHHHHHCGGGGGCCHHH
T ss_pred HHHHHHHH-HhcCCcccHHHHH--H-HHHHHHHhhHHHHHhhHHHHhcCCHHH
Confidence 34555555 6889999986443 1 223456666666322235566666554
No 4
>3vgx_C Envelope glycoprotein GP160; 6-helix bundle, membrane fusion, membrane protein; HET: GOL; 1.74A {Human immunodeficiency virus type 1} PDB: 3vu5_A 3vu6_A
Probab=3.70 E-value=3.7e+02 Score=15.75 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=7.0
Q ss_pred hhhHHHHhhcHH
Q 025872 5 EQTVTAIKSYQN 16 (247)
Q Consensus 5 ~~~~~~~~~~~~ 16 (247)
.+++-|++.|++
T Consensus 26 qarvla~e~ylk 37 (40)
T 3vgx_C 26 QARILAVERYLK 37 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccccccccCCc
Confidence 345666666654
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=3.41 E-value=7.1e+02 Score=13.47 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=16.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhH
Q 025872 196 KRSTTYLVNGVIIFFAWLIARILL 219 (247)
Q Consensus 196 ~~s~~y~~N~~l~~~tFf~~Ri~~ 219 (247)
|++..-.+.|+.-.++|..+-.-.
T Consensus 2 khtiweviaglvalltflafgfwl 25 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888877654433
No 6
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=3.28 E-value=6.1e+02 Score=13.13 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=7.6
Q ss_pred hhcHHHHHHHhh
Q 025872 12 KSYQNQAQVLVK 23 (247)
Q Consensus 12 ~~~~~~~~~~~~ 23 (247)
+.||.|.+++.+
T Consensus 3 eeyqemlenlre 14 (26)
T 2dpr_A 3 EEYQEMLENLRE 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777776654
No 7
>2kyg_C Protein CBFA2T1; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=3.27 E-value=6.7e+02 Score=14.50 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=11.6
Q ss_pred hHHHHhhcHHHHHHH
Q 025872 7 TVTAIKSYQNQAQVL 21 (247)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (247)
+-.|+|-|+.|+|.-
T Consensus 20 aeeavnevkrQam~e 34 (38)
T 2kyg_C 20 AEEAVNEVKRQAMTE 34 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999998864
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.02 E-value=1.1e+03 Score=15.52 Aligned_cols=26 Identities=4% Similarity=0.097 Sum_probs=21.4
Q ss_pred ceee-ehhhHHHHHHHHHHHHHHHHhh
Q 025872 71 MEWN-NRGISTVHAIFITALSLYYVFW 96 (247)
Q Consensus 71 ~~w~-~r~vS~vHAiv~~~~a~~~l~~ 96 (247)
.||. -|+...+-|.+..++++.+++.
T Consensus 12 YDY~tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHheecchhhHHHHHHHHHHHHHc
Confidence 3454 4899999999999999988875
No 9
>3vh7_A Envelope glycoprotein GP160; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_C 3p7k_A
Probab=2.78 E-value=5e+02 Score=16.60 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=7.5
Q ss_pred hhhHHHHhhcHH
Q 025872 5 EQTVTAIKSYQN 16 (247)
Q Consensus 5 ~~~~~~~~~~~~ 16 (247)
.+++-|++.|++
T Consensus 43 qarvlA~EryLk 54 (58)
T 3vh7_A 43 QARILAVERYLK 54 (58)
T ss_dssp HHHHHHHHHHHH
T ss_pred cccccccccccc
Confidence 356667766665
No 10
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=2.76 E-value=4.1e+02 Score=17.29 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=14.7
Q ss_pred hhhhhhhcccCCCccccceee
Q 025872 54 ISTFYFKAYNGLTKIQRMEWN 74 (247)
Q Consensus 54 ls~~~~k~y~~Ls~~~k~~w~ 74 (247)
+|+.+.+.|++|++++|..|.
T Consensus 35 isk~lg~~Wk~ls~eeK~~y~ 55 (81)
T 1i11_A 35 ISKILGSRWKAMTNLEKQPYY 55 (81)
T ss_dssp HHHHHHHHHTTSCSGGGHHHH
T ss_pred HHHHHHhhhhhCCHHHHHHHH
Confidence 455555788999988776653
Done!