Query 025872
Match_columns 247
No_of_seqs 155 out of 635
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 19:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025872.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025872hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i11a_ a.21.1.1 (A:) Sox-5 {M 4.6 1E+02 0.0076 18.3 0.6 22 54-75 33-54 (70)
2 d1ckta_ a.21.1.1 (A:) High mob 3.9 1.1E+02 0.008 18.1 0.3 22 54-75 34-55 (71)
3 d1hsma_ a.21.1.1 (A:) High mob 3.7 1.2E+02 0.0084 18.5 0.3 22 55-76 34-55 (79)
4 d1jb0m_ f.23.19.1 (M:) Subunit 3.6 3.2E+02 0.024 13.7 2.9 26 195-220 3-28 (31)
5 d2lefa_ a.21.1.1 (A:) Lymphoid 3.6 97 0.0071 19.4 -0.2 22 54-75 33-54 (86)
6 d1iapa_ a.91.1.1 (A:) p115RhoG 3.4 4.7E+02 0.035 19.0 3.7 42 145-186 16-63 (190)
7 d1ug7a_ a.24.24.1 (A:) Domain 3.4 2.9E+02 0.021 18.7 2.2 43 6-48 34-80 (128)
8 d1td6a_ a.234.1.1 (A:) Hypothe 3.1 7.9E+02 0.058 18.5 4.9 47 18-69 59-106 (286)
9 d2vv5a3 f.34.1.1 (A:27-112) Me 2.9 5.6E+02 0.041 15.1 4.4 24 37-60 5-28 (86)
10 d1l6ja1 a.20.1.2 (A:29-105) Ge 2.8 2.5E+02 0.018 17.1 1.3 17 5-21 37-53 (77)
No 1
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.56 E-value=1e+02 Score=18.35 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=15.5
Q ss_pred hhhhhhhcccCCCccccceeee
Q 025872 54 ISTFYFKAYNGLTKIQRMEWNN 75 (247)
Q Consensus 54 ls~~~~k~y~~Ls~~~k~~w~~ 75 (247)
+|+.+.+.|+.|+..+|..|..
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~ 54 (70)
T d1i11a_ 33 ISKILGSRWKAMTNLEKQPYYE 54 (70)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 4455556889999888876643
No 2
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.89 E-value=1.1e+02 Score=18.12 Aligned_cols=22 Identities=5% Similarity=0.179 Sum_probs=15.6
Q ss_pred hhhhhhhcccCCCccccceeee
Q 025872 54 ISTFYFKAYNGLTKIQRMEWNN 75 (247)
Q Consensus 54 ls~~~~k~y~~Ls~~~k~~w~~ 75 (247)
+++.+.+.|+.|++.+|..|..
T Consensus 34 i~k~~~~~Wk~ls~~eK~~y~~ 55 (71)
T d1ckta_ 34 FSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4445556888999888877654
No 3
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=3.67 E-value=1.2e+02 Score=18.49 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=15.5
Q ss_pred hhhhhhcccCCCccccceeeeh
Q 025872 55 STFYFKAYNGLTKIQRMEWNNR 76 (247)
Q Consensus 55 s~~~~k~y~~Ls~~~k~~w~~r 76 (247)
++.+.+.|++|++.+|..|..+
T Consensus 34 ~k~~~~~W~~ls~~eK~~y~~~ 55 (79)
T d1hsma_ 34 AKKLGEMWNNTAADDKQPYEKK 55 (79)
T ss_dssp HHHHHHHHHTSCSTTTHHHHHH
T ss_pred HHHHhhHHhcCCHHHHHHHHHH
Confidence 4445568889998888777543
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.61 E-value=3.2e+02 Score=13.67 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=19.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhHH
Q 025872 195 MKRSTTYLVNGVIIFFAWLIARILLF 220 (247)
Q Consensus 195 ~~~s~~y~~N~~l~~~tFf~~Ri~~~ 220 (247)
..++.++....++++-.+..+|+..-
T Consensus 3 lsdtqv~valvial~pg~lafrlate 28 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRLSTE 28 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566787888888888888887654
No 5
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.60 E-value=97 Score=19.38 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=16.4
Q ss_pred hhhhhhhcccCCCccccceeee
Q 025872 54 ISTFYFKAYNGLTKIQRMEWNN 75 (247)
Q Consensus 54 ls~~~~k~y~~Ls~~~k~~w~~ 75 (247)
+|..+.+.|+.|++++|..|..
T Consensus 33 Isk~lg~~Wk~ls~~eK~~y~~ 54 (86)
T d2lefa_ 33 INQILGRRWHALSREEQAKYYE 54 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 4555567899999988887765
No 6
>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.39 E-value=4.7e+02 Score=18.97 Aligned_cols=42 Identities=5% Similarity=-0.101 Sum_probs=21.6
Q ss_pred hhHHHHHHHH------HHHhHhhhccCCchhHHHHHHHHhhcchhhhH
Q 025872 145 MEYVVHHSLS------GIAVAYSMFSGEGQLYTYMVLISEVTTPEINM 186 (247)
Q Consensus 145 ~~~llHH~~~------l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnl 186 (247)
....+||+++ +++++.+=.++.+..==.-....|+-|-||.-
T Consensus 16 LaVFL~yv~sq~DPspLLfyL~td~yk~~~~Kd~rk~~~Ei~stFL~~ 63 (190)
T d1iapa_ 16 LMALLQHVALQFEPGPLLCCLHADMLGSLGPKEAKKAFLDFYHSFLEK 63 (190)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhccChHHHHHHHHHHHHHHcCC
Confidence 3456777766 45554443333332222345566766666643
No 7
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.36 E-value=2.9e+02 Score=18.75 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=30.6
Q ss_pred hhHHHHhhcHHHHHHHhhhhccC---CCcc-hHHHHHHHHHHHHHHH
Q 025872 6 QTVTAIKSYQNQAQVLVKNYIIA---DPFI-PYTSILAGLLACKVVY 48 (247)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l-~~~~i~~s~~~~~~i~ 48 (247)
|-|-|++-|+..+..+.+.-.-. +|+- ...-+++-++.|.-+-
T Consensus 34 QLVEA~dEYq~lar~L~k~~~~q~~~~~FtEdqKK~l~kIAtCLelR 80 (128)
T d1ug7a_ 34 QLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQKKTIGKIATCLELR 80 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHHHHH
Confidence 56889999999999998887433 3333 3356777888886553
No 8
>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=3.10 E-value=7.9e+02 Score=18.52 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHHHhhhhccCCCcchHHHHHHHHHHHHHH-HHHHHHhhhhhhhcccCCCccc
Q 025872 18 AQVLVKNYIIADPFIPYTSILAGLLACKVV-YDLTQLISTFYFKAYNGLTKIQ 69 (247)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~i~~s~~~~~~i-~~ls~~ls~~~~k~y~~Ls~~~ 69 (247)
+++.+++ .++.|++|.+.+ |. +.-. ..+++-++...+..|.+|++++
T Consensus 59 Al~~~~e-ELdspYlP~~li--s~--F~~a~~~~~~~l~e~~n~~lesL~~~e 106 (286)
T d1td6a_ 59 AQSRCEE-ELAAPYLPKPLV--SF--FQSLLQLVNHDLLEQQNAALASLPAAK 106 (286)
T ss_dssp HHHHHHH-HTTCTTSCHHHH--HH--HHHHHHHHHHHHHHHHCGGGGGCCHHH
T ss_pred HHHHHHH-HhcCCccchhHH--HH--HHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 4455555 688899998533 22 2222 2345555554445555555443
No 9
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=2.89 E-value=5.6e+02 Score=15.10 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 025872 37 ILAGLLACKVVYDLTQLISTFYFK 60 (247)
Q Consensus 37 i~~s~~~~~~i~~ls~~ls~~~~k 60 (247)
++.+++...+-+.+++++.+...|
T Consensus 5 il~~l~il~i~~~i~~~i~~~~~~ 28 (86)
T d2vv5a3 5 IVAALAIIIVGLIIARMISNAVNR 28 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544555566666554433
No 10
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.80 E-value=2.5e+02 Score=17.11 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=10.7
Q ss_pred hhhHHHHhhcHHHHHHH
Q 025872 5 EQTVTAIKSYQNQAQVL 21 (247)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (247)
.++.-|||.||+....-
T Consensus 37 ~~~~~AIk~fQ~f~gL~ 53 (77)
T d1l6ja1 37 KSLGPALLLLQKQLSLP 53 (77)
T ss_dssp --CHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 34567899888776443
Done!