BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025874
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium
Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And
Phosphate.
pdb|2YB4|A Chain A, Structure Of An Amidohydrolase From Chromobacterium
Violaceum (Efi Target Efi-500202) With Bound So4, No
Metal
Length = 292
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 29 RLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPW 88
R H AR +V++G V++++ F +YL G P Y + E AV I GG+AV+AHP
Sbjct: 134 RTHFARHLVDSGAVKDMRTVFRKYLTPGKPGYVSHQWASLEDAVGWIVGAGGMAVIAHPG 193
Query: 89 ALKNPAAIIRKL----KDVGLHGLEV 110
+I +L + G G+EV
Sbjct: 194 RYDMGRTLIERLILDFQAAGGQGIEV 219
>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
Phosphoesterase (Bad_1165) From Bifidobacterium
Adolescentis Atcc 15703 At 2.40 A Resolution
pdb|3O0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
Phosphoesterase (Bad_1165) From Bifidobacterium
Adolescentis Atcc 15703 At 1.94 A Resolution
Length = 301
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 22 GKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGL 81
G+ GR H+A A+V AG E AFA + Y P + + GG+
Sbjct: 139 GERTTIGRPHIADALVAAGVYETRSDAFADAVSAKSKYYIPTPSPSTHEVIAAVKGAGGV 198
Query: 82 AVLAHPWALKNPAAIIRKLKDV--------GLHGLEVY 111
V AH +P R L D GL GLEV+
Sbjct: 199 VVAAH---AGDPQRNRRLLSDEQLDAXIADGLDGLEVW 233
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 170 CGAIKEILESYADEPSDSNLSHIT 193
C A+K++ E+ ++EPS+SN+S ++
Sbjct: 36 CKALKQVFEAISNEPSNSNVSFLS 59
>pdb|2ODF|A Chain A, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|B Chain B, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|C Chain C, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|D Chain D, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|E Chain E, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|F Chain F, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|G Chain G, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
pdb|2ODF|H Chain H, The Crystal Structure Of Gene Product Atu2144 From
Agrobacterium Tumefaciens
Length = 257
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 27 PGRLHVARAMVEAGHVENLKQAFARYLYDGG-PAYSTGSEPL 67
PG L VAR + E H + Q F+R +YD P S + P+
Sbjct: 60 PGALAVARLLSEKFHATLVYQRFSRLVYDCNRPPESPSAMPV 101
>pdb|3OAM|A Chain A, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|B Chain B, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|C Chain C, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
pdb|3OAM|D Chain D, Crystal Structure Of Cytidylyltransferase From Vibrio
Cholerae
Length = 252
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 41 HVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL 100
VE QAF + P + +G+E LAEV ++ + V P AIIR++
Sbjct: 53 RVEQAVQAFGGVVCMTSPNHQSGTERLAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQV 112
Query: 101 KD 102
D
Sbjct: 113 AD 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,819,347
Number of Sequences: 62578
Number of extensions: 265661
Number of successful extensions: 618
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 8
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)