BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025874
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=trpH PE=3 SV=1
Length = 274
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Query: 4 KLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTG 63
KL K +P ++ +A V R H AR +V+ G V N QAF RYL G A+
Sbjct: 110 KLEKAGIPNAYDGAKALADGEVT--RAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKA 167
Query: 64 SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEVY---RSDGK 116
A++ IH GG+A++AHP +RKL K G G+E+ ++ +
Sbjct: 168 EWADIPTAIETIHAAGGIAIIAHPLRYNMTGKWVRKLIVDFKAWGGDGMEMADCGQTKDQ 227
Query: 117 LVAYTDLADTYGLLKLGGSDYH 138
A + L GSD+H
Sbjct: 228 RQMLARWAKEFDLQGSVGSDFH 249
>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=trpH PE=3 SV=3
Length = 293
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 4 KLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTG 63
+L K +P WE ++A G A R H AR +VE G + F +YL G Y
Sbjct: 121 RLEKAHIPGAWEGALRLANGG-AVTRGHFARFLVECGKAATMADVFKKYLARGKTGYVPP 179
Query: 64 SEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEV---YRSDGK 116
E A+ +IH +GG AVLAHP A +++L D +EV +S +
Sbjct: 180 QWCTIEQAIDVIHHSGGKAVLAHPGRYDLSAKWLKRLVAHFADHHGDAMEVAQCQQSPNE 239
Query: 117 LVAYTDLADTYGLLKLGGSDYH 138
LA + L GSD+H
Sbjct: 240 RTQLATLARQHHLWASLGSDFH 261
>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1
Length = 293
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 4 KLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTG 63
+L K ++P E ++A +G A R H AR +VE G ++ F +YL G Y
Sbjct: 117 RLEKAQIPGALEGAQRLA-QGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPP 175
Query: 64 SEPLAEVAVQLIHRTGGLAVLAHP--------WALKNPAAIIRKLKDVGLHGLEVYRSDG 115
E A+ +IH +GG AVLAHP W LK A + + + +S
Sbjct: 176 QWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKW-LKRLVAHFAEHHGDAMEVAQCQQSPN 234
Query: 116 KLVAYTDLADTYGLLKLGGSDYH 138
+ LA + L GSD+H
Sbjct: 235 ERTQLAALARQHHLWASQGSDFH 257
>sp|Q6NRI0|P6R3A_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-A
OS=Xenopus laevis GN=ppp6r3-a PE=2 SV=1
Length = 852
Score = 34.3 bits (77), Expect = 0.75, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 159 NDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECL 218
N+FL I C A+ IL S D P S +S G +LK + L C L+D L
Sbjct: 385 NNFLHTQVEI-CLAL--ILASPGDSPEHSTISEQNSTGDHVLLKHLF-LKCH--LIDRIL 438
Query: 219 SLWLTNEERQS 229
W NE+RQS
Sbjct: 439 EAWAMNEKRQS 449
>sp|Q6NRF1|P6R3B_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-B
OS=Xenopus laevis GN=ppp6r3-b PE=2 SV=1
Length = 850
Score = 34.3 bits (77), Expect = 0.92, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 159 NDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECL 218
N+FL I C A+ IL S D P S +S G +LK + L C L+D L
Sbjct: 385 NNFLHTQVEI-CIAL--ILASPGDSPEHSTISEENSAGDHVLLKHLF-LKCH--LIDRIL 438
Query: 219 SLWLTNEERQS 229
W NE+RQS
Sbjct: 439 EAWAMNEKRQS 449
>sp|Q3V4Q5|Y710_ATV Putative transmembrane protein ORF710 OS=Acidianus two-tailed virus
PE=4 SV=1
Length = 710
Score = 34.3 bits (77), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 96 IIRKLKDVGLHGLEVYRSD-------GKLVAYTDLADTYGLLKLGGSDYHGRGGHGESEL 148
++ K VG+ G+ + + L+ +TDL TYG+L G Y G L
Sbjct: 401 VVVKFYGVGVTGIHISTNAFGINQQYSALIGFTDLLHTYGVLIQNGEAYSYIAGTKGPAL 460
Query: 149 GSVKLPVLV 157
G+V P++V
Sbjct: 461 GNVTFPMVV 469
>sp|A7ZDR5|RNY_CAMC1 Ribonuclease Y OS=Campylobacter concisus (strain 13826) GN=rny PE=3
SV=2
Length = 517
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E S++ + D L ARP GA +E+LES+ + + +I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADALSAARP---GARREVLESFLKRVEE--IENIAKSKEG--IK 456
Query: 203 RNYPLNCGKGL 213
+ Y +N G+ +
Sbjct: 457 QAYAINAGREI 467
>sp|Q5HTQ5|RNY_CAMJR Ribonuclease Y OS=Campylobacter jejuni (strain RM1221) GN=rny PE=3
SV=1
Length = 517
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 203 RNYPLNCGKGL 213
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A1W0J3|RNY_CAMJJ Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=rny PE=3 SV=1
Length = 517
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 203 RNYPLNCGKGL 213
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|Q9PN86|RNY_CAMJE Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=rny PE=3 SV=1
Length = 517
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 203 RNYPLNCGKGL 213
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A8FMR4|RNY_CAMJ8 Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=rny PE=3 SV=1
Length = 517
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 203 RNYPLNCGKGL 213
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A7H2G9|RNY_CAMJD Ribonuclease Y OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=rny PE=3 SV=1
Length = 517
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 203 RNYPLNCGKGL 213
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A7I2Y9|RNY_CAMHC Ribonuclease Y OS=Campylobacter hominis (strain ATCC BAA-381 / LMG
19568 / NCTC 13146 / CH001A) GN=rny PE=3 SV=2
Length = 517
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E SV+ + D L ARP GA +E+LE++ S+ + +I G +K
Sbjct: 404 HGHEEPTSVESAAVCTADVLSAARP---GARREVLEAFLKRVSE--IENIATSKEG--VK 456
Query: 203 RNYPLNCGKGL 213
+ Y +N G+ +
Sbjct: 457 QAYAINAGREI 467
>sp|Q7VIL7|RNY_HELHP Ribonuclease Y OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=rny PE=3 SV=2
Length = 523
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 140 RGGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGK 199
+ HG E+ S++ + D L ARP GA +E LE++ D I R K
Sbjct: 407 KAHHGYEEIQSIECAAVCAADTLSAARP---GARREALENFLKRMQD-----IERIAMDK 458
Query: 200 M-LKRNYPLNCGK 211
+ +K+ Y +N G+
Sbjct: 459 IGVKQAYAINAGR 471
>sp|A0M2K0|RNY_GRAFK Ribonuclease Y OS=Gramella forsetii (strain KT0803) GN=rny PE=3
SV=1
Length = 520
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
H E E+ S+ P++ + D + ARP GA +++L+SY D L I +G G +K
Sbjct: 407 HDEIEMNSLLSPIVQVCDAISGARP---GARRQVLDSYIQRLKD--LEEIA-FGFGG-VK 459
Query: 203 RNYPLNCGKGLVDECLSLWLTNEERQSAEFE 233
+ Y + G+ L S +++E+ + FE
Sbjct: 460 KAYAIQAGRELRVIVESEKVSDEKASNLSFE 490
>sp|A7GY23|RNY_CAMC5 Ribonuclease Y OS=Campylobacter curvus (strain 525.92) GN=rny PE=3
SV=2
Length = 517
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E S++ + D L ARP GA +E+LES+ + + +I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADCLSAARP---GARREVLESFLKRVEE--VENIAKSKDG--IK 456
Query: 203 RNYPLNCGKGL 213
+ Y +N G+ +
Sbjct: 457 QAYAINAGREI 467
>sp|A0RNB3|RNY_CAMFF Ribonuclease Y OS=Campylobacter fetus subsp. fetus (strain 82-40)
GN=rny PE=3 SV=1
Length = 517
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E SV+ + D L ARP GA +E+LES+ + I++ G +K
Sbjct: 404 HGHEEALSVECAAVCAADALSAARP---GARREVLESFLKRVEEIESIAISKEG----IK 456
Query: 203 RNYPLNCGKGL 213
Y +N G+ +
Sbjct: 457 GAYAINAGREI 467
>sp|Q30SA7|RNY_SULDN Ribonuclease Y OS=Sulfurimonas denitrificans (strain ATCC 33889 /
DSM 1251) GN=rny PE=3 SV=1
Length = 522
Score = 30.8 bits (68), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 143 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 202
HG E+ S++ + D L ARP GA +E+LES+ + + I G +K
Sbjct: 409 HGHEEINSIECGAVCAADALSAARP---GARREVLESFLKRV--TAIEEIASQHSG--VK 461
Query: 203 RNYPLNCGK 211
+ Y +N G+
Sbjct: 462 QAYAINAGR 470
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,953,296
Number of Sequences: 539616
Number of extensions: 4329184
Number of successful extensions: 9653
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 9649
Number of HSP's gapped (non-prelim): 23
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)