Query 025874
Match_columns 247
No_of_seqs 217 out of 1176
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 99.8 1.2E-18 2.7E-23 157.1 11.3 138 3-141 109-250 (258)
2 PRK09248 putative hydrolase; V 98.8 1.2E-08 2.7E-13 90.6 8.3 77 67-150 114-202 (246)
3 TIGR00375 conserved hypothetic 97.8 6E-05 1.3E-09 71.9 7.6 107 41-151 85-199 (374)
4 PF13263 PHP_C: PHP-associated 97.7 1.6E-05 3.4E-10 55.9 1.5 31 116-151 3-33 (56)
5 PRK07945 hypothetical protein; 97.1 0.0015 3.2E-08 61.3 6.9 70 70-141 212-297 (335)
6 PRK07328 histidinol-phosphatas 97.0 0.0027 5.8E-08 57.3 7.9 69 71-141 146-234 (269)
7 PRK08392 hypothetical protein; 96.9 0.0037 8.1E-08 54.6 7.4 74 70-150 108-191 (215)
8 TIGR01856 hisJ_fam histidinol 96.7 0.0033 7.1E-08 56.3 6.1 71 70-141 146-242 (253)
9 PRK08123 histidinol-phosphatas 96.5 0.016 3.5E-07 52.4 8.7 76 70-151 157-260 (270)
10 PRK00912 ribonuclease P protei 96.4 0.01 2.2E-07 52.6 7.0 72 69-141 92-180 (237)
11 PRK06361 hypothetical protein; 96.1 0.016 3.5E-07 50.1 6.7 65 72-140 106-173 (212)
12 PRK06740 histidinol-phosphatas 96.0 0.014 3.1E-07 54.7 6.3 76 69-151 205-302 (331)
13 PRK05588 histidinol-phosphatas 96.0 0.025 5.3E-07 50.6 7.4 75 70-150 128-227 (255)
14 PRK08609 hypothetical protein; 95.8 0.024 5.1E-07 57.0 7.0 66 75-141 454-531 (570)
15 PRK00448 polC DNA polymerase I 95.8 0.0014 3E-08 71.8 -1.9 117 5-140 426-566 (1437)
16 COG1387 HIS2 Histidinol phosph 95.7 0.051 1.1E-06 48.6 8.0 81 66-152 111-205 (237)
17 PRK07329 hypothetical protein; 95.0 0.066 1.4E-06 47.9 6.5 72 69-141 128-222 (246)
18 COG1379 PHP family phosphoeste 93.1 0.087 1.9E-06 49.9 3.4 98 62-163 115-221 (403)
19 PF10566 Glyco_hydro_97: Glyco 89.3 1.1 2.4E-05 41.3 6.5 75 64-142 71-160 (273)
20 COG4464 CapC Capsular polysacc 88.0 1.8 3.9E-05 39.1 6.7 76 68-144 118-202 (254)
21 COG0613 Predicted metal-depend 84.3 0.5 1.1E-05 42.9 1.4 75 64-140 96-178 (258)
22 TIGR03234 OH-pyruv-isom hydrox 80.9 3.7 7.9E-05 36.1 5.5 43 93-135 16-59 (254)
23 PRK09997 hydroxypyruvate isome 80.6 4.5 9.7E-05 35.8 6.0 41 93-133 17-58 (258)
24 COG0800 Eda 2-keto-3-deoxy-6-p 76.9 10 0.00022 33.9 6.9 60 68-128 3-63 (211)
25 PRK09989 hypothetical protein; 73.1 7.7 0.00017 34.3 5.4 40 94-133 18-58 (258)
26 PF02811 PHP: PHP domain; Int 70.7 12 0.00027 30.1 5.7 48 66-114 106-166 (175)
27 PRK05473 hypothetical protein; 70.6 12 0.00026 28.9 5.1 42 31-75 26-67 (86)
28 PF01301 Glyco_hydro_35: Glyco 70.2 8.6 0.00019 35.9 5.2 48 85-132 16-80 (319)
29 COG2355 Zn-dependent dipeptida 69.8 13 0.00028 35.1 6.2 29 61-89 197-226 (313)
30 cd06556 ICL_KPHMT Members of t 69.3 35 0.00075 30.8 8.7 99 38-140 81-206 (240)
31 PRK09856 fructoselysine 3-epim 67.8 17 0.00037 32.1 6.4 46 93-138 15-70 (275)
32 COG0826 Collagenase and relate 66.5 16 0.00035 34.7 6.3 65 65-134 48-119 (347)
33 PF06135 DUF965: Bacterial pro 66.0 14 0.0003 28.1 4.5 31 31-63 23-53 (79)
34 COG1902 NemA NADH:flavin oxido 61.7 19 0.0004 34.5 5.7 25 65-89 82-108 (363)
35 PRK15447 putative protease; Pr 59.6 75 0.0016 29.3 9.3 63 66-133 48-112 (301)
36 PRK13209 L-xylulose 5-phosphat 59.6 24 0.00052 31.4 5.8 54 85-139 16-82 (283)
37 COG4472 Uncharacterized protei 58.3 26 0.00057 26.9 4.9 41 31-77 26-66 (88)
38 cd04733 OYE_like_2_FMN Old yel 58.1 29 0.00062 32.4 6.3 23 66-88 82-106 (338)
39 PF02679 ComA: (2R)-phospho-3- 57.9 18 0.0004 32.9 4.7 61 68-131 56-129 (244)
40 cd02930 DCR_FMN 2,4-dienoyl-Co 57.7 29 0.00063 32.6 6.3 24 66-89 77-102 (353)
41 cd03309 CmuC_like CmuC_like. P 56.7 31 0.00068 32.3 6.2 67 65-136 197-265 (321)
42 PRK10605 N-ethylmaleimide redu 56.6 27 0.0006 33.1 5.9 24 66-89 79-104 (362)
43 PF00724 Oxidored_FMN: NADH:fl 55.9 29 0.00062 32.5 5.9 23 66-88 80-104 (341)
44 TIGR03849 arch_ComA phosphosul 55.7 42 0.0009 30.5 6.6 61 68-131 43-116 (237)
45 PRK13210 putative L-xylulose 5 53.6 30 0.00065 30.5 5.4 41 93-133 18-70 (284)
46 cd04734 OYE_like_3_FMN Old yel 53.1 35 0.00076 32.1 6.0 24 66-89 77-102 (343)
47 PF01261 AP_endonuc_2: Xylose 52.5 15 0.00032 30.3 3.0 37 97-133 1-45 (213)
48 TIGR00262 trpA tryptophan synt 52.4 70 0.0015 28.9 7.6 59 69-127 105-163 (256)
49 PRK13523 NADPH dehydrogenase N 52.3 39 0.00084 31.8 6.1 24 66-89 81-106 (337)
50 cd02803 OYE_like_FMN_family Ol 52.2 23 0.00051 32.3 4.6 24 66-89 77-102 (327)
51 PLN03059 beta-galactosidase; P 51.5 25 0.00054 37.4 5.1 47 86-132 52-115 (840)
52 cd04735 OYE_like_4_FMN Old yel 51.4 39 0.00084 31.8 6.0 25 65-89 77-103 (353)
53 PRK05718 keto-hydroxyglutarate 49.3 74 0.0016 28.1 7.1 60 68-128 5-65 (212)
54 cd04726 KGPDC_HPS 3-Keto-L-gul 49.0 69 0.0015 26.9 6.7 63 69-131 41-106 (202)
55 TIGR03551 F420_cofH 7,8-dideme 47.6 34 0.00074 31.9 5.0 66 69-134 106-198 (343)
56 PRK06552 keto-hydroxyglutarate 45.8 85 0.0018 27.7 6.9 65 70-135 5-74 (213)
57 PF01208 URO-D: Uroporphyrinog 44.7 31 0.00067 31.7 4.2 67 66-138 220-288 (343)
58 PRK08309 short chain dehydroge 44.2 13 0.00028 31.6 1.5 26 219-244 146-171 (177)
59 COG3494 Uncharacterized protei 44.1 65 0.0014 29.9 6.0 56 78-133 210-275 (279)
60 PRK08508 biotin synthase; Prov 43.6 1E+02 0.0022 27.9 7.4 64 69-134 78-156 (279)
61 cd08580 GDPD_Rv2277c_like Glyc 43.1 30 0.00065 31.4 3.8 43 68-113 218-260 (263)
62 cd07937 DRE_TIM_PC_TC_5S Pyruv 43.0 1.3E+02 0.0029 27.2 8.0 66 66-133 55-136 (275)
63 TIGR02631 xylA_Arthro xylose i 42.9 42 0.00091 32.2 4.9 41 93-133 34-86 (382)
64 COG0200 RplO Ribosomal protein 42.7 24 0.00051 29.9 2.8 68 12-85 80-151 (152)
65 PRK07094 biotin synthase; Prov 41.9 58 0.0012 29.8 5.5 63 67-131 104-181 (323)
66 cd00951 KDGDH 5-dehydro-4-deox 40.9 2.3E+02 0.005 25.7 9.2 85 65-163 49-148 (289)
67 COG3473 Maleate cis-trans isom 39.8 1.9E+02 0.004 26.3 8.0 74 69-151 88-163 (238)
68 PRK06256 biotin synthase; Vali 39.5 99 0.0021 28.5 6.7 38 94-131 152-203 (336)
69 COG0399 WecE Predicted pyridox 39.2 1.6E+02 0.0034 28.5 8.1 77 54-132 72-153 (374)
70 TIGR00683 nanA N-acetylneurami 39.1 2.9E+02 0.0064 25.1 9.7 90 65-163 50-154 (290)
71 PLN02705 beta-amylase 38.9 83 0.0018 32.6 6.4 106 94-215 271-394 (681)
72 COG1038 PycA Pyruvate carboxyl 38.9 55 0.0012 35.2 5.2 69 64-137 65-142 (1149)
73 cd04747 OYE_like_5_FMN Old yel 38.6 71 0.0015 30.5 5.7 24 66-89 78-103 (361)
74 TIGR00506 ribB 3,4-dihydroxy-2 37.6 94 0.002 27.4 5.9 43 94-136 145-194 (199)
75 PRK13125 trpA tryptophan synth 37.5 1.9E+02 0.0041 25.6 8.0 67 65-131 87-156 (244)
76 PF06230 DUF1009: Protein of u 37.4 1.8E+02 0.004 25.9 7.7 39 95-133 173-214 (214)
77 cd02933 OYE_like_FMN Old yello 36.3 94 0.002 29.2 6.0 24 66-89 77-102 (338)
78 COG0854 PdxJ Pyridoxal phospha 35.9 2.2E+02 0.0047 26.0 7.9 73 67-143 112-201 (243)
79 PF01726 LexA_DNA_bind: LexA D 35.8 19 0.0004 26.0 1.0 41 3-43 17-57 (65)
80 cd02929 TMADH_HD_FMN Trimethyl 35.5 98 0.0021 29.4 6.1 24 66-89 83-108 (370)
81 PRK03620 5-dehydro-4-deoxygluc 35.5 3.4E+02 0.0074 24.8 9.5 85 64-162 55-154 (303)
82 cd00952 CHBPH_aldolase Trans-o 35.0 3.6E+02 0.0079 24.8 11.1 90 65-163 57-161 (309)
83 TIGR01182 eda Entner-Doudoroff 35.0 1.2E+02 0.0025 26.8 6.0 55 73-128 3-58 (204)
84 PTZ00170 D-ribulose-5-phosphat 35.0 2.3E+02 0.005 24.9 8.0 69 59-129 44-115 (228)
85 PRK01792 ribB 3,4-dihydroxy-2- 34.6 1.1E+02 0.0024 27.3 5.9 43 94-136 155-204 (214)
86 PRK00014 ribB 3,4-dihydroxy-2- 34.5 1.1E+02 0.0024 27.7 5.9 56 81-136 143-209 (230)
87 COG0159 TrpA Tryptophan syntha 34.5 1.1E+02 0.0024 28.3 6.0 74 45-129 64-148 (265)
88 PRK07114 keto-hydroxyglutarate 34.4 1.7E+02 0.0036 26.2 7.0 58 66-124 3-61 (222)
89 TIGR00542 hxl6Piso_put hexulos 34.2 89 0.0019 27.8 5.3 40 94-133 19-70 (279)
90 PRK04147 N-acetylneuraminate l 34.2 3.6E+02 0.0077 24.4 9.8 90 65-163 53-156 (293)
91 cd00003 PNPsynthase Pyridoxine 33.9 2.2E+02 0.0049 25.8 7.7 68 67-138 111-192 (234)
92 cd00530 PTE Phosphotriesterase 33.9 1.6E+02 0.0034 26.2 6.9 93 47-140 136-248 (293)
93 TIGR00559 pdxJ pyridoxine 5'-p 33.8 2.3E+02 0.0049 25.8 7.8 67 68-138 112-192 (237)
94 PRK13111 trpA tryptophan synth 33.6 2.5E+02 0.0055 25.4 8.2 36 94-129 107-143 (258)
95 PRK15108 biotin synthase; Prov 33.3 97 0.0021 29.2 5.6 37 69-108 114-150 (345)
96 cd04724 Tryptophan_synthase_al 33.2 1E+02 0.0022 27.4 5.5 60 70-129 66-130 (242)
97 PRK00910 ribB 3,4-dihydroxy-2- 33.0 1.2E+02 0.0027 27.1 5.9 43 94-136 156-205 (218)
98 PRK05265 pyridoxine 5'-phospha 32.6 2.4E+02 0.0052 25.7 7.7 66 68-137 115-193 (239)
99 TIGR03700 mena_SCO4494 putativ 32.6 1.6E+02 0.0034 27.7 6.9 41 94-134 150-207 (351)
100 PF02836 Glyco_hydro_2_C: Glyc 32.3 1.8E+02 0.004 26.1 7.1 42 95-137 40-81 (298)
101 PLN02905 beta-amylase 31.9 1.6E+02 0.0034 30.8 7.0 106 94-215 289-412 (702)
102 cd00717 URO-D Uroporphyrinogen 31.1 1.2E+02 0.0026 27.9 5.8 63 65-134 214-279 (335)
103 PRK06419 rpl15p 50S ribosomal 31.0 37 0.00081 28.4 2.2 36 49-85 107-145 (148)
104 COG2876 AroA 3-deoxy-D-arabino 30.7 1.8E+02 0.0038 27.2 6.6 81 27-112 151-252 (286)
105 PLN02417 dihydrodipicolinate s 30.7 3.9E+02 0.0086 24.1 9.0 35 79-113 69-105 (280)
106 PF08513 LisH: LisH; InterPro 30.3 26 0.00057 20.9 0.8 14 31-44 6-19 (27)
107 COG1082 IolE Sugar phosphate i 29.7 1.1E+02 0.0023 26.7 5.0 39 95-133 19-63 (274)
108 cd08574 GDPD_GDE_2_3_6 Glycero 29.2 86 0.0019 27.9 4.3 37 69-109 213-249 (252)
109 PF14384 DUF4415: Domain of un 29.1 43 0.00092 23.8 1.9 30 151-181 33-62 (62)
110 PRK12677 xylose isomerase; Pro 29.1 1.1E+02 0.0025 29.3 5.4 41 93-133 33-85 (384)
111 PF13653 GDPD_2: Glycerophosph 29.0 53 0.0012 20.3 2.1 17 94-110 10-26 (30)
112 PLN02746 hydroxymethylglutaryl 28.8 4.9E+02 0.011 24.8 9.6 99 29-140 70-193 (347)
113 TIGR01212 radical SAM protein, 28.5 50 0.0011 30.4 2.8 81 49-131 79-179 (302)
114 cd08563 GDPD_TtGDE_like Glycer 28.3 1.1E+02 0.0024 26.5 4.8 39 70-112 191-229 (230)
115 COG2071 Predicted glutamine am 28.2 56 0.0012 29.8 3.0 46 69-139 29-74 (243)
116 cd00019 AP2Ec AP endonuclease 28.1 1.5E+02 0.0033 26.2 5.7 17 94-110 13-29 (279)
117 COG0436 Aspartate/tyrosine/aro 28.0 5E+02 0.011 24.8 9.6 101 29-132 71-200 (393)
118 cd08582 GDPD_like_2 Glyceropho 27.8 1.2E+02 0.0025 26.3 4.9 42 69-114 191-232 (233)
119 PLN02803 beta-amylase 27.8 1.2E+02 0.0025 30.9 5.3 107 94-215 110-233 (548)
120 PRK08255 salicylyl-CoA 5-hydro 27.7 1.4E+02 0.003 31.2 6.1 23 67-89 476-501 (765)
121 cd07944 DRE_TIM_HOA_like 4-hyd 27.6 2.6E+02 0.0056 25.3 7.2 49 81-131 74-125 (266)
122 cd08562 GDPD_EcUgpQ_like Glyce 27.6 1.2E+02 0.0026 25.9 4.9 10 13-22 88-97 (229)
123 PRK08883 ribulose-phosphate 3- 27.5 4.1E+02 0.0089 23.4 8.3 69 67-135 69-137 (220)
124 PLN00197 beta-amylase; Provisi 27.2 1.2E+02 0.0027 30.9 5.4 107 94-215 130-253 (573)
125 COG0546 Gph Predicted phosphat 27.1 4E+02 0.0087 22.8 11.4 119 4-130 29-161 (220)
126 cd00945 Aldolase_Class_I Class 27.0 3.4E+02 0.0074 21.9 7.5 63 70-132 35-117 (201)
127 PRK01060 endonuclease IV; Prov 26.9 1.2E+02 0.0027 26.7 5.0 38 93-130 14-62 (281)
128 cd00954 NAL N-Acetylneuraminic 26.7 4.8E+02 0.01 23.5 12.2 90 65-163 50-154 (288)
129 PRK13125 trpA tryptophan synth 26.6 3.2E+02 0.007 24.1 7.6 74 46-131 51-132 (244)
130 cd07938 DRE_TIM_HMGL 3-hydroxy 26.6 4.8E+02 0.01 23.7 8.8 100 29-140 22-145 (274)
131 TIGR00433 bioB biotin syntheta 26.1 2.1E+02 0.0045 25.6 6.3 57 71-131 103-174 (296)
132 PLN02161 beta-amylase 26.1 1.3E+02 0.0028 30.5 5.2 48 94-141 120-180 (531)
133 COG2100 Predicted Fe-S oxidore 25.9 1.9E+02 0.0041 28.1 6.1 52 63-114 172-224 (414)
134 COG0502 BioB Biotin synthase a 25.9 1.3E+02 0.0027 28.8 5.0 67 66-134 118-198 (335)
135 cd00945 Aldolase_Class_I Class 25.8 2.4E+02 0.0051 22.9 6.2 13 101-113 139-151 (201)
136 cd08564 GDPD_GsGDE_like Glycer 25.4 1.6E+02 0.0035 26.2 5.4 44 69-113 213-257 (265)
137 PF03740 PdxJ: Pyridoxal phosp 25.3 2.6E+02 0.0056 25.5 6.6 68 67-138 112-195 (239)
138 PRK15452 putative protease; Pr 25.2 1.6E+02 0.0035 28.9 5.8 66 67-137 47-119 (443)
139 cd08609 GDPD_GDE3 Glycerophosp 25.2 1.3E+02 0.0028 28.2 4.9 42 69-114 235-276 (315)
140 PF06844 DUF1244: Protein of u 25.2 24 0.00052 26.0 0.0 13 212-224 11-23 (68)
141 PRK04051 rps4p 30S ribosomal p 25.1 80 0.0017 27.4 3.2 52 2-56 74-128 (177)
142 PRK00115 hemE uroporphyrinogen 25.1 1.7E+02 0.0038 27.1 5.8 65 65-136 223-290 (346)
143 TIGR02313 HpaI-NOT-DapA 2,4-di 25.0 5.3E+02 0.011 23.5 9.6 35 79-113 68-104 (294)
144 CHL00200 trpA tryptophan synth 24.3 3.8E+02 0.0082 24.4 7.7 76 45-129 62-145 (263)
145 PRK00311 panB 3-methyl-2-oxobu 24.2 3.3E+02 0.0072 24.9 7.3 165 10-186 56-253 (264)
146 PF02571 CbiJ: Precorrin-6x re 24.1 2.8E+02 0.0062 25.0 6.8 108 27-135 11-139 (249)
147 COG4738 Predicted transcriptio 24.1 2.5E+02 0.0054 23.0 5.6 74 1-77 16-103 (124)
148 PRK07143 hypothetical protein; 24.0 3.5E+02 0.0076 24.9 7.4 48 93-141 67-122 (279)
149 PRK09875 putative hydrolase; P 23.7 5.1E+02 0.011 24.0 8.5 105 70-179 167-285 (292)
150 TIGR00083 ribF riboflavin kina 23.6 3.8E+02 0.0083 24.7 7.6 45 94-138 57-109 (288)
151 COG1663 LpxK Tetraacyldisaccha 23.3 35 0.00075 32.6 0.7 95 28-132 187-291 (336)
152 cd03465 URO-D_like The URO-D _ 23.1 1.6E+02 0.0035 26.6 5.1 67 65-138 207-275 (330)
153 TIGR03249 KdgD 5-dehydro-4-deo 23.0 5.7E+02 0.012 23.2 8.7 85 65-163 54-153 (296)
154 cd06388 PBP1_iGluR_AMPA_GluR4 23.0 2.8E+02 0.006 26.0 6.7 73 68-140 140-220 (371)
155 COG0329 DapA Dihydrodipicolina 22.5 2.5E+02 0.0054 25.9 6.2 54 76-129 68-131 (299)
156 cd08579 GDPD_memb_like Glycero 22.4 1.6E+02 0.0035 25.1 4.7 41 69-113 180-220 (220)
157 cd06343 PBP1_ABC_ligand_bindin 22.4 4.7E+02 0.01 23.6 8.0 60 70-129 163-224 (362)
158 cd08556 GDPD Glycerophosphodie 22.3 1.7E+02 0.0037 23.7 4.6 39 68-110 149-187 (189)
159 COG5064 SRP1 Karyopherin (impo 22.1 96 0.0021 30.4 3.4 73 5-86 378-452 (526)
160 PLN02424 ketopantoate hydroxym 22.0 7.1E+02 0.015 23.8 9.9 166 9-186 75-279 (332)
161 PF14229 DUF4332: Domain of un 21.9 1.3E+02 0.0028 24.1 3.7 51 29-79 62-120 (122)
162 TIGR01210 conserved hypothetic 21.9 1.5E+02 0.0033 27.4 4.7 60 69-130 91-170 (313)
163 cd08567 GDPD_SpGDE_like Glycer 21.9 2E+02 0.0043 25.1 5.2 40 70-113 222-261 (263)
164 PF14162 YozD: YozD-like prote 21.8 1.1E+02 0.0023 21.7 2.7 18 32-49 17-34 (57)
165 cd06557 KPHMT-like Ketopantoat 21.8 3.9E+02 0.0084 24.3 7.2 163 11-185 54-249 (254)
166 TIGR01463 mtaA_cmuA methyltran 21.6 2.4E+02 0.0052 25.9 6.0 44 66-112 220-263 (340)
167 PRK07259 dihydroorotate dehydr 21.6 5.5E+02 0.012 23.2 8.2 46 68-113 145-191 (301)
168 PF11848 DUF3368: Domain of un 21.6 2.6E+02 0.0056 18.6 4.9 41 32-79 8-48 (48)
169 cd08583 PI-PLCc_GDPD_SF_unchar 21.4 2.9E+02 0.0063 24.0 6.2 18 95-112 217-234 (237)
170 PLN02522 ATP citrate (pro-S)-l 21.4 1.6E+02 0.0034 30.5 4.9 70 61-133 63-135 (608)
171 PF04309 G3P_antiterm: Glycero 21.4 4.7E+02 0.01 22.6 7.3 62 64-131 29-94 (175)
172 PRK05692 hydroxymethylglutaryl 21.4 6.1E+02 0.013 23.2 8.5 93 29-132 28-137 (287)
173 TIGR00674 dapA dihydrodipicoli 21.4 6E+02 0.013 22.8 9.5 51 81-131 68-127 (285)
174 KOG4175 Tryptophan synthase al 21.3 3.1E+02 0.0068 24.9 6.2 64 66-129 77-149 (268)
175 cd06589 GH31 The enzymes of gl 21.3 1.1E+02 0.0023 27.5 3.4 47 62-108 62-110 (265)
176 PRK03353 ribB 3,4-dihydroxy-2- 21.2 2.4E+02 0.0051 25.2 5.6 56 81-136 138-204 (217)
177 PRK09140 2-dehydro-3-deoxy-6-p 21.1 3.2E+02 0.007 23.8 6.3 56 72-128 4-60 (206)
178 smart00518 AP2Ec AP endonuclea 21.1 2E+02 0.0043 25.2 5.1 40 94-133 13-63 (273)
179 cd08610 GDPD_GDE6 Glycerophosp 21.0 1.8E+02 0.0039 27.2 5.0 42 69-114 235-276 (316)
180 PRK05628 coproporphyrinogen II 21.0 1.5E+02 0.0032 27.9 4.5 75 52-130 64-159 (375)
181 PRK09454 ugpQ cytoplasmic glyc 21.0 1.6E+02 0.0035 25.9 4.5 42 69-114 199-240 (249)
182 PF07722 Peptidase_C26: Peptid 21.0 1.7E+02 0.0037 25.5 4.6 35 69-107 27-61 (217)
183 KOG0496 Beta-galactosidase [Ca 20.9 1.3E+02 0.0029 31.2 4.3 39 94-132 52-105 (649)
184 COG0074 SucD Succinyl-CoA synt 20.9 3.1E+02 0.0067 25.8 6.4 115 66-185 55-200 (293)
185 TIGR00262 trpA tryptophan synt 20.8 4.4E+02 0.0096 23.7 7.3 75 45-130 57-142 (256)
186 PF01876 RNase_P_p30: RNase P 20.7 2.9E+02 0.0063 22.4 5.7 74 65-139 31-121 (150)
187 TIGR00539 hemN_rel putative ox 20.6 1.7E+02 0.0036 27.4 4.7 75 52-130 56-151 (360)
188 cd08575 GDPD_GDE4_like Glycero 20.6 1E+02 0.0022 27.6 3.2 43 68-114 220-262 (264)
189 cd08612 GDPD_GDE4 Glycerophosp 20.6 1.3E+02 0.0029 27.4 4.0 42 69-114 251-292 (300)
190 TIGR01464 hemE uroporphyrinoge 20.5 1.7E+02 0.0036 27.0 4.7 65 65-136 217-284 (338)
191 PRK09057 coproporphyrinogen II 20.3 1.5E+02 0.0032 28.1 4.3 55 52-110 60-120 (380)
192 PF07308 DUF1456: Protein of u 20.2 1.5E+02 0.0032 21.6 3.4 51 2-53 5-59 (68)
193 cd08605 GDPD_GDE5_like_1_plant 20.1 1.2E+02 0.0027 27.1 3.6 11 12-22 121-131 (282)
194 PRK05904 coproporphyrinogen II 20.1 1.3E+02 0.0028 28.4 3.9 75 52-130 61-154 (353)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=157.11 Aligned_cols=138 Identities=36% Similarity=0.503 Sum_probs=124.1
Q ss_pred HHHhhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcCCeE
Q 025874 3 LKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLA 82 (247)
Q Consensus 3 ~kL~~~G~~I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aGGva 82 (247)
+++...+++-.++.+.+.++.+ .+.|+|+++.+|+.+++++..++|++|+..++++|+++.+.+.++.|.+++.+||++
T Consensus 109 ~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~ 187 (258)
T COG0613 109 ERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTA 187 (258)
T ss_pred HhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccchHHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEE
Confidence 4455567888899988887654 478999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcCCCCh-HHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceeecCCCCCCC
Q 025874 83 VLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRG 141 (247)
Q Consensus 83 VLAHP~~~~~~-~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TGGSDfHG~~ 141 (247)
|+|||.+|... ..++..+.+.|.||||+++... +...+..++++++++.|+|||||.+.
T Consensus 188 v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~~~~k~~~~l~s~gs~fh~~~ 250 (258)
T COG0613 188 VLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLALLAKEFGLLASVGSDFHTPG 250 (258)
T ss_pred EeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHHHHHHHhhhhhcccccccCCC
Confidence 99999998753 5788999999999999999764 56889999999999999999999875
No 2
>PRK09248 putative hydrolase; Validated
Probab=98.82 E-value=1.2e-08 Score=90.63 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHcCCeEEecCCcCCC---ChHHHHHHHHHcCCcEEEEecCcc---------cHHHHHHHHHHcCCceeec
Q 025874 67 LAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRSDG---------KLVAYTDLADTYGLLKLGG 134 (247)
Q Consensus 67 ~~~EaI~~Ih~aGGvaVLAHP~~~~---~~~~li~~l~~~GlDGIEv~~~~~---------~~~~~~~lA~~~gLl~TGG 134 (247)
..++.+++| ++|++.|||||.++. ....+++.+++.|+ +||+.+++. ....+.+++.++|+..|.|
T Consensus 114 ~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~g 191 (246)
T PRK09248 114 NTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALG 191 (246)
T ss_pred HHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEe
Confidence 356788888 899999999998654 23467788888888 999987532 4678889999999999999
Q ss_pred CCCCCCCCCCCccccC
Q 025874 135 SDYHGRGGHGESELGS 150 (247)
Q Consensus 135 SDfHG~~~~~~~~lG~ 150 (247)
||+|.+. .+|.
T Consensus 192 SDAH~~~-----~vg~ 202 (246)
T PRK09248 192 SDAHIAF-----DIGN 202 (246)
T ss_pred CCCCChh-----hhcc
Confidence 9999984 5774
No 3
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=97.80 E-value=6e-05 Score=71.93 Aligned_cols=107 Identities=16% Similarity=0.079 Sum_probs=68.6
Q ss_pred CCCCHH--HHHHHHhhCCCCc-eeCC-CCCCHHHHHHHHHHcCCeEEecCCcCCCC--hHH--HHHHHHHcCCcEEEEec
Q 025874 41 HVENLK--QAFARYLYDGGPA-YSTG-SEPLAEVAVQLIHRTGGLAVLAHPWALKN--PAA--IIRKLKDVGLHGLEVYR 112 (247)
Q Consensus 41 ~v~~~~--eaF~~yL~~g~pa-yv~~-~~~~~~EaI~~Ih~aGGvaVLAHP~~~~~--~~~--li~~l~~~GlDGIEv~~ 112 (247)
|..+.. +.|.++|...-+. --|. ..++..+.++.+++.||++|.||+++... ... .+.+.....-|+||+..
T Consensus 85 ~fp~l~~a~~f~~~l~~~l~~~~rp~q~~~~~~~~~~~v~~~gGi~iPAHiftP~~Sl~g~~~~~~~~~g~~p~avElgl 164 (374)
T TIGR00375 85 FMPTLADMKQFSNWLSARLKNIGRSSQRIYETGLNLEKVQDYGGLFGPAHIFTPWTSLYKSGDSSSDCYVFDPDFVELGL 164 (374)
T ss_pred ECCCHHHHHHHHHHHHhhCCCCCCCCeeeecHHHHHHHhhcCCeEEEeCCCCCCcccccccccchhhhhcCCCceEEEec
Confidence 345543 3477777542111 0122 23688899999999999999999986331 000 01111111129999999
Q ss_pred CcccHHHHHHHHHHcCCceeecCCCCCCCCCCCccccCc
Q 025874 113 SDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSV 151 (247)
Q Consensus 113 ~~~~~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~~ 151 (247)
+.. ..++.+++...++....+||.|.+. +..+|+-
T Consensus 165 S~d-~~ma~~~s~L~~~~~ISnSDAHsl~---p~~IGre 199 (374)
T TIGR00375 165 SAD-TDMADHISELNDYPFLTNSDAHSLG---PHRLGRE 199 (374)
T ss_pred cCC-HHHHHHhHHhcCCCeEeecCCCCCC---hhHhCCc
Confidence 766 4555589999999999999999974 1247753
No 4
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=97.70 E-value=1.6e-05 Score=55.94 Aligned_cols=31 Identities=39% Similarity=0.431 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHcCCceeecCCCCCCCCCCCccccCc
Q 025874 116 KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSV 151 (247)
Q Consensus 116 ~~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~~ 151 (247)
.+.++.++|++++++++||||.|.+. .+|..
T Consensus 3 ~N~~A~~~A~~~~lp~~~gSDAH~~~-----~vG~~ 33 (56)
T PF13263_consen 3 ANRRAAELAEKYGLPFTGGSDAHFLE-----EVGRG 33 (56)
T ss_dssp ---HHHHHHHHTT--EEEE--BSSGG-----GTTTT
T ss_pred HHHHHHHHHHHcCCCeEeEEcccChh-----hcCCE
Confidence 46789999999999999999999873 68875
No 5
>PRK07945 hypothetical protein; Provisional
Probab=97.06 E-value=0.0015 Score=61.32 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCeEEecCCcC---CC----------ChHHHHHHHHHcCCcEEEEecCc---ccHHHHHHHHHHcCCceee
Q 025874 70 VAVQLIHRTGGLAVLAHPWA---LK----------NPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 70 EaI~~Ih~aGGvaVLAHP~~---~~----------~~~~li~~l~~~GlDGIEv~~~~---~~~~~~~~lA~~~gLl~TG 133 (247)
..++++. .+.+-|+|||.. +. ..+++++.+++.| -+||+-.+. .....+.++|+++|..+|-
T Consensus 212 ~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vti 289 (335)
T PRK07945 212 RMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG-TAVEINSRPERRDPPTRLLRLALDAGCLFSI 289 (335)
T ss_pred HHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEEe
Confidence 3444554 678999999941 10 1245666666665 589998754 2567889999999999999
Q ss_pred cCCCCCCC
Q 025874 134 GSDYHGRG 141 (247)
Q Consensus 134 GSDfHG~~ 141 (247)
|||+|.+.
T Consensus 290 gSDAH~p~ 297 (335)
T PRK07945 290 DTDAHAPG 297 (335)
T ss_pred cCCCCChh
Confidence 99999985
No 6
>PRK07328 histidinol-phosphatase; Provisional
Probab=97.01 E-value=0.0027 Score=57.35 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=50.1
Q ss_pred HHHHHHHcCCeEEecCCcCCC-----C---h----HHHHHHHHHcCCcEEEEecCc--------ccHHHHHHHHHHcCCc
Q 025874 71 AVQLIHRTGGLAVLAHPWALK-----N---P----AAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDLADTYGLL 130 (247)
Q Consensus 71 aI~~Ih~aGGvaVLAHP~~~~-----~---~----~~li~~l~~~GlDGIEv~~~~--------~~~~~~~~lA~~~gLl 130 (247)
.++++. .|.+-|+|||.... . . +++++.+++.| -+||+-.+. .....+.++|+++|..
T Consensus 146 ~~~~~~-~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~ 223 (269)
T PRK07328 146 VEQAAR-SGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAG-LALEVNTAGLRKPVGEIYPSPALLRACRERGIP 223 (269)
T ss_pred HHHHHH-cCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCC
Confidence 455554 68999999997422 0 1 34566666665 489998742 1346789999999999
Q ss_pred eeecCCCCCCC
Q 025874 131 KLGGSDYHGRG 141 (247)
Q Consensus 131 ~TGGSDfHG~~ 141 (247)
+|-|||.|.+.
T Consensus 224 itigSDAH~~~ 234 (269)
T PRK07328 224 VVLGSDAHRPE 234 (269)
T ss_pred EEEeCCCCCHH
Confidence 99999999984
No 7
>PRK08392 hypothetical protein; Provisional
Probab=96.87 E-value=0.0037 Score=54.64 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCeEEecCCcCCC---------ChHHHHHHHHHcCCcEEEEecCc-ccHHHHHHHHHHcCCceeecCCCCC
Q 025874 70 VAVQLIHRTGGLAVLAHPWALK---------NPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLGGSDYHG 139 (247)
Q Consensus 70 EaI~~Ih~aGGvaVLAHP~~~~---------~~~~li~~l~~~GlDGIEv~~~~-~~~~~~~~lA~~~gLl~TGGSDfHG 139 (247)
+.++++ +.+.+-|+|||.... ..+++++.+++.| -.+|+-... .....+.+.|+++|..+|-|||.|.
T Consensus 108 ~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~ 185 (215)
T PRK08392 108 LVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHR 185 (215)
T ss_pred HHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 345555 568999999996321 1234556555666 689997632 3455788999999999999999999
Q ss_pred CCCCCCccccC
Q 025874 140 RGGHGESELGS 150 (247)
Q Consensus 140 ~~~~~~~~lG~ 150 (247)
+. .+|.
T Consensus 186 ~~-----~vg~ 191 (215)
T PRK08392 186 PE-----DVGN 191 (215)
T ss_pred hH-----HCCc
Confidence 84 5775
No 8
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=96.74 E-value=0.0033 Score=56.32 Aligned_cols=71 Identities=24% Similarity=0.220 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCeEEecCCcCCC----C--------------hHHHHHHHHHcCCcEEEEecCc--------ccHHHHHHH
Q 025874 70 VAVQLIHRTGGLAVLAHPWALK----N--------------PAAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDL 123 (247)
Q Consensus 70 EaI~~Ih~aGGvaVLAHP~~~~----~--------------~~~li~~l~~~GlDGIEv~~~~--------~~~~~~~~l 123 (247)
...++|....-.-|+|||...+ . .+++++.+++.| -+||+-.+. .....+.++
T Consensus 146 ~~~~~i~~~~~~dvlgH~Dli~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~g~r~~~~~~yP~~~il~~ 224 (253)
T TIGR01856 146 SVYDSIQALFKPLVIGHIDLVQKFGPLFTDVSSFSDEVYELLQRILKLVASQG-KALEFNTSGLRKPLEEAYPSKELLNL 224 (253)
T ss_pred HHHHHHHcCCCCCCcccHhHHHHhCccccccccccHHHHHHHHHHHHHHHHcC-CEEEEEcHhhcCCCCCCCCCHHHHHH
Confidence 3444666633357999995311 1 134555565555 589998752 134678899
Q ss_pred HHHcCCceeecCCCCCCC
Q 025874 124 ADTYGLLKLGGSDYHGRG 141 (247)
Q Consensus 124 A~~~gLl~TGGSDfHG~~ 141 (247)
|+++|..+|-|||.|.+.
T Consensus 225 ~~~~g~~itlgSDAH~~~ 242 (253)
T TIGR01856 225 AKELGIPLVLGSDAHGPG 242 (253)
T ss_pred HHHcCCCEEecCCCCCHH
Confidence 999999999999999984
No 9
>PRK08123 histidinol-phosphatase; Reviewed
Probab=96.45 E-value=0.016 Score=52.42 Aligned_cols=76 Identities=21% Similarity=0.192 Sum_probs=51.2
Q ss_pred HHHHHHHHcCC---eEEecCCcC---C----C---------ChHHHHHHHHHcCCcEEEEecCc---------ccHHHHH
Q 025874 70 VAVQLIHRTGG---LAVLAHPWA---L----K---------NPAAIIRKLKDVGLHGLEVYRSD---------GKLVAYT 121 (247)
Q Consensus 70 EaI~~Ih~aGG---vaVLAHP~~---~----~---------~~~~li~~l~~~GlDGIEv~~~~---------~~~~~~~ 121 (247)
..++++....+ +-|+|||.. + . ..+++++.+++.| -+||+-.+. .....+.
T Consensus 157 ~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINtsgl~~~~~~~~yP~~~il 235 (270)
T PRK08123 157 TVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRG-YELDFNTAGLRKPYCGEPYPPGEII 235 (270)
T ss_pred HHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCcHHHH
Confidence 34445544322 569999962 1 1 1135566666666 489998642 1347789
Q ss_pred HHHHHcCCceeecCCCCCCCCCCCccccCc
Q 025874 122 DLADTYGLLKLGGSDYHGRGGHGESELGSV 151 (247)
Q Consensus 122 ~lA~~~gLl~TGGSDfHG~~~~~~~~lG~~ 151 (247)
++|+++|..+|-|||+|.+. .+|..
T Consensus 236 ~~~~e~g~~itlgSDAH~~~-----~vg~~ 260 (270)
T PRK08123 236 TLAKKLGIPLVYGSDAHSAA-----DVGRG 260 (270)
T ss_pred HHHHHcCCCEEEeCCCCCHH-----HHHhh
Confidence 99999999999999999984 46653
No 10
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=96.42 E-value=0.01 Score=52.62 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCeEEecCCcCCC----ChHHHHHHHHHcCCcEEEEecCcc-------------cHHHHHHHHHHcCCce
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVYRSDG-------------KLVAYTDLADTYGLLK 131 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~----~~~~li~~l~~~GlDGIEv~~~~~-------------~~~~~~~lA~~~gLl~ 131 (247)
+++.+.+.+.+++-|++||+... ..+.+++..++.| -.+|+-++.- ....+.++|+++|..+
T Consensus 92 ~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g-v~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~pi 170 (237)
T PRK00912 92 EKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN-VAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPL 170 (237)
T ss_pred HHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC-eEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCE
Confidence 44546788899999999998522 1235555555555 4788877531 1146889999999999
Q ss_pred eecCCCCCCC
Q 025874 132 LGGSDYHGRG 141 (247)
Q Consensus 132 TGGSDfHG~~ 141 (247)
+.|||.|.+.
T Consensus 171 iisSdAh~~~ 180 (237)
T PRK00912 171 VLTSGAMSCY 180 (237)
T ss_pred EEeCCCCccc
Confidence 9999999974
No 11
>PRK06361 hypothetical protein; Provisional
Probab=96.14 E-value=0.016 Score=50.13 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=48.4
Q ss_pred HHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc---ccHHHHHHHHHHcCCceeecCCCCCC
Q 025874 72 VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGR 140 (247)
Q Consensus 72 I~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~---~~~~~~~~lA~~~gLl~TGGSDfHG~ 140 (247)
++++ +.|-+-|||||.... ..+++.++ ..--.||+..+. .....+.++|+++|+.++.|||+|.+
T Consensus 106 ~~a~-~~~~~dvlaHpd~~~--~~~~~~~~-~~~~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~ 173 (212)
T PRK06361 106 LAAI-ECEDVDILAHPGLIT--EEEAELAA-ENGVFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHAP 173 (212)
T ss_pred HHHH-hCCCCcEecCcchhh--HHHHHHHH-HcCeEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCCH
Confidence 4444 678899999997533 34555444 455799997633 24578899999999999999999965
No 12
>PRK06740 histidinol-phosphatase; Validated
Probab=96.04 E-value=0.014 Score=54.68 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCeEEecCCcCCC-------------ChHHHHHHHHHcCCcEEEEecCc---------ccHHHHHHHHHH
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALK-------------NPAAIIRKLKDVGLHGLEVYRSD---------GKLVAYTDLADT 126 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~-------------~~~~li~~l~~~GlDGIEv~~~~---------~~~~~~~~lA~~ 126 (247)
+..+++| +.|-+-|+|||...+ ..+.+++.+++.| -.+|+-.+. .....+.+.|++
T Consensus 205 ~~~~~~i-~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g-~~lEINt~~~~r~~~~e~yP~~~il~~~~e 282 (331)
T PRK06740 205 KTVECAI-RSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETN-TATEINAGLYYRYPVREMCPSPLFLQVLAK 282 (331)
T ss_pred HHHHHHH-HcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcC-CEEEEECccccCCCCCCCCcCHHHHHHHHH
Confidence 3455556 578999999996321 1123445555554 589998752 134678889999
Q ss_pred cCCceeecCCCCCCCCCCCccccCc
Q 025874 127 YGLLKLGGSDYHGRGGHGESELGSV 151 (247)
Q Consensus 127 ~gLl~TGGSDfHG~~~~~~~~lG~~ 151 (247)
+|..+|-|||+|.+. .+|..
T Consensus 283 ~Gv~~tlgSDAH~p~-----~VG~~ 302 (331)
T PRK06740 283 HEVPITLSSDAHYPN-----DLGKY 302 (331)
T ss_pred CCCeEEEeeCCCCHH-----HHHhH
Confidence 999999999999984 57753
No 13
>PRK05588 histidinol-phosphatase; Provisional
Probab=96.00 E-value=0.025 Score=50.56 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCeEEecCCcCCC-------------Ch----HHHHHHHHHcCCcEEEEecCcc-------cHHHHHHHHH
Q 025874 70 VAVQLIHRTGGLAVLAHPWALK-------------NP----AAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLAD 125 (247)
Q Consensus 70 EaI~~Ih~aGGvaVLAHP~~~~-------------~~----~~li~~l~~~GlDGIEv~~~~~-------~~~~~~~lA~ 125 (247)
..++++...+.+-|+|||.... .. +++++.+++.| -+||+-.++- ......+.+.
T Consensus 128 ~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEINt~~l~~~~~~~~~~~~l~~~~ 206 (255)
T PRK05588 128 NMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEKE-KVLEINTRRLDDKRSVENLVKIYKRFY 206 (255)
T ss_pred HHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHcC-CEEEEECcccCCCCCCCCHHHHHHHHH
Confidence 3455565667799999996321 01 34555555555 4899976431 2356678888
Q ss_pred HcCCc-eeecCCCCCCCCCCCccccC
Q 025874 126 TYGLL-KLGGSDYHGRGGHGESELGS 150 (247)
Q Consensus 126 ~~gLl-~TGGSDfHG~~~~~~~~lG~ 150 (247)
+.|.. +|-|||.|.+. .+|.
T Consensus 207 ~~g~~~i~lgSDAH~~~-----~vg~ 227 (255)
T PRK05588 207 ELGGKYITLGSDAHNIE-----DIGN 227 (255)
T ss_pred HcCCcEEEEECCCCCHH-----HHHh
Confidence 88876 79999999984 5664
No 14
>PRK08609 hypothetical protein; Provisional
Probab=95.80 E-value=0.024 Score=56.99 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHHcCCeEEecCCcC-----CC----ChHHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceeecCCCCCCC
Q 025874 75 IHRTGGLAVLAHPWA-----LK----NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRG 141 (247)
Q Consensus 75 Ih~aGGvaVLAHP~~-----~~----~~~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TGGSDfHG~~ 141 (247)
+-+.|.+.|+|||.+ +. +.+.+++.+++.| -.||+-.++. ....+.+.|.++|+.+|-|||.|.+.
T Consensus 454 a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~ 531 (570)
T PRK08609 454 ACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTE 531 (570)
T ss_pred HhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChh
Confidence 345789999999973 11 1234555445555 5899987542 45788899999999999999999984
No 15
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=95.79 E-value=0.0014 Score=71.85 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=79.7
Q ss_pred HhhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCC-------------ceeCCCCCCHHHH
Q 025874 5 LNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGP-------------AYSTGSEPLAEVA 71 (247)
Q Consensus 5 L~~~G~~I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~p-------------ayv~~~~~~~~Ea 71 (247)
++..|++..++++.+++ .++++.|.+. +.|..|+.++.+ .++. ..++++|+
T Consensus 426 LETTGL~~~~deIIEIg------------AV~V~~G~ii---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~Ea 489 (1437)
T PRK00448 426 VETTGLSAVYDEIIEIG------------AVKIKNGEII---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEV 489 (1437)
T ss_pred hhhcCCCCchhhhheee------------eEEEeCCeEe---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHH
Confidence 45557777777766553 2445666553 567788877764 3343 67899999
Q ss_pred HHHHHH-cCCeEEecCCcCCCCh--HHHHH-----HHHHcCCcEEEEecCc---ccHHHHHHHHHHcCCceeecCCCCCC
Q 025874 72 VQLIHR-TGGLAVLAHPWALKNP--AAIIR-----KLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGR 140 (247)
Q Consensus 72 I~~Ih~-aGGvaVLAHP~~~~~~--~~li~-----~l~~~GlDGIEv~~~~---~~~~~~~~lA~~~gLl~TGGSDfHG~ 140 (247)
++.+++ +||.+++|||..++.. ...++ .+...++|++|+++.. .....+..+|+++|+..++ .|..
T Consensus 490 L~~f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~lGL~~~~---~HrA 566 (1437)
T PRK00448 490 LPKFKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKFGVELEH---HHRA 566 (1437)
T ss_pred HHHHHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHcCCCCCC---CcCh
Confidence 999999 8999999999865421 11111 2234568899987653 3567889999999998864 3653
No 16
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=95.67 E-value=0.051 Score=48.63 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHcCCeEEecCCcCCC-----------ChHHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCce
Q 025874 66 PLAEVAVQLIHRTGGLAVLAHPWALK-----------NPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLK 131 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~-----------~~~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~ 131 (247)
....+.+...-..+-+-|+|||+... ...+.++.+.+. --.+|+-.+.. .+....++|+++|...
T Consensus 111 ~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~aleins~~~~~~~~~~~~~~~~e~G~~~ 189 (237)
T COG1387 111 EDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKN-GKALEINSRPGRLDPNSEILRLARELGVKL 189 (237)
T ss_pred HHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHh-CcEEeecCCcCccCchHHHHHHHHHhCCeE
Confidence 34456666677778899999998531 123445444344 45888877633 5688899999999999
Q ss_pred eecCCCCCCCCCCCccccCcc
Q 025874 132 LGGSDYHGRGGHGESELGSVK 152 (247)
Q Consensus 132 TGGSDfHG~~~~~~~~lG~~~ 152 (247)
|=|||.|.+. .+|.+.
T Consensus 190 ~i~tDaH~~~-----~lg~~~ 205 (237)
T COG1387 190 AIGTDAHRPG-----DLGDMY 205 (237)
T ss_pred EeecCcCChh-----hcccch
Confidence 9999999984 588764
No 17
>PRK07329 hypothetical protein; Provisional
Probab=95.00 E-value=0.066 Score=47.86 Aligned_cols=72 Identities=25% Similarity=0.094 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCeEEecCCcC---CC-----Ch-------HHHHHHHHHcCCcEEEEecCcc-------cHHHHHHHHHH
Q 025874 69 EVAVQLIHRTGGLAVLAHPWA---LK-----NP-------AAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLADT 126 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~---~~-----~~-------~~li~~l~~~GlDGIEv~~~~~-------~~~~~~~lA~~ 126 (247)
++.++++...|=+-|+|||.. +. .. +++++.+++.| -.||+-.+.. ......+.|++
T Consensus 128 ~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~lEiNt~~~~~~~~~~~~~~~l~~~~~ 206 (246)
T PRK07329 128 EKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDND-LAFELNTKSMYLYGNEGLYRYAIELYKQ 206 (246)
T ss_pred HHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHcC-CeEEEECcccccCCCCcchHHHHHHHHH
Confidence 345556655557899999963 11 10 24555665655 4889986421 22456899999
Q ss_pred cCCc-eeecCCCCCCC
Q 025874 127 YGLL-KLGGSDYHGRG 141 (247)
Q Consensus 127 ~gLl-~TGGSDfHG~~ 141 (247)
+|.. +|-|||.|.+.
T Consensus 207 ~g~~~i~~gSDAH~~~ 222 (246)
T PRK07329 207 LGGKLFSIGSDAHKLE 222 (246)
T ss_pred cCCeEEEecCCCCCHH
Confidence 9975 89999999984
No 18
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=93.13 E-value=0.087 Score=49.87 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=64.9
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEecCCcC-----CCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCceeecCC
Q 025874 62 TGSEPLAEVAVQLIHRTGGLAVLAHPWA-----LKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD 136 (247)
Q Consensus 62 ~~~~~~~~EaI~~Ih~aGGvaVLAHP~~-----~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~TGGSD 136 (247)
|+-+++-.|..+++++.||+...||-+. |+..+.+-+-+-.+-+|+||.== +.+..++..+.+-+.+....-||
T Consensus 115 prv~~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvELGL-SADtdmAD~I~el~~~pFLtNSD 193 (403)
T COG1379 115 PRVYLTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVELGL-SADTDMADMIEELHRLPFLTNSD 193 (403)
T ss_pred ceeeccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHHhcc-ccCchHHHHHHHhccCCcccccc
Confidence 4557889999999999999999999542 23222222222122356666533 34667788888889999999999
Q ss_pred CCCCCCCCCccccC----ccCCHHHHHHHhc
Q 025874 137 YHGRGGHGESELGS----VKLPVLVLNDFLK 163 (247)
Q Consensus 137 fHG~~~~~~~~lG~----~~ip~~~l~~i~~ 163 (247)
.|.+.. ..+|+ +.+++..++.|++
T Consensus 194 AHSp~p---hrLgREfn~f~v~~~sF~~~r~ 221 (403)
T COG1379 194 AHSPYP---HRLGREFNQFEVEEISFEELRK 221 (403)
T ss_pred cCCCch---hhhhhhhheeecccCCHHHHHH
Confidence 999631 24664 3455555555554
No 19
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=89.28 E-value=1.1 Score=41.34 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHcC-CeEEecCCcC------C-CChHHHHHHHHHcCCcEEEEecCc-c-c-----HHHHHHHHHHcC
Q 025874 64 SEPLAEVAVQLIHRTG-GLAVLAHPWA------L-KNPAAIIRKLKDVGLHGLEVYRSD-G-K-----LVAYTDLADTYG 128 (247)
Q Consensus 64 ~~~~~~EaI~~Ih~aG-GvaVLAHP~~------~-~~~~~li~~l~~~GlDGIEv~~~~-~-~-----~~~~~~lA~~~g 128 (247)
...+++|+|+-.++-| ||.++.|=-. + ...++.+..+.+.|+.||=+-.=. + + -+.+.+-|.+|+
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~ 150 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYK 150 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcC
Confidence 5689999999999988 7888888543 2 124678889999999999885422 2 2 245667788999
Q ss_pred CceeecCCCCCCCC
Q 025874 129 LLKLGGSDYHGRGG 142 (247)
Q Consensus 129 Ll~TGGSDfHG~~~ 142 (247)
|++ ||||..+
T Consensus 151 Lmv----nfHg~~k 160 (273)
T PF10566_consen 151 LMV----NFHGATK 160 (273)
T ss_dssp -EE----EETTS--
T ss_pred cEE----EecCCcC
Confidence 999 9999854
No 20
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=87.96 E-value=1.8 Score=39.11 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCeEEecCCcCCCC---hHHHHHHHHHcCCcEEEEecCc------ccHHHHHHHHHHcCCceeecCCCC
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSD------GKLVAYTDLADTYGLLKLGGSDYH 138 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~~~---~~~li~~l~~~GlDGIEv~~~~------~~~~~~~~lA~~~gLl~TGGSDfH 138 (247)
..++.--|..-|=++|+|||-|+.. ....+.+|++.|.=- -|-.++ ...+++...--+-||.-.-+||.|
T Consensus 118 a~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lyeLid~ga~s-Qvts~Sl~GlfGK~ikK~a~~~iE~~L~hFiASDAH 196 (254)
T COG4464 118 ADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYELIDKGAYS-QVTSSSLAGLFGKKIKKFALQLIEANLVHFIASDAH 196 (254)
T ss_pred HHHHHHHHHHCCceeeeechhhHHHHHhChHHHHHHHhcccce-eechHhHHhhhhHHHHHHHHHHHHcccceeeecccc
Confidence 3456666788899999999998752 236788888877311 121222 133444444446799999999999
Q ss_pred CCCCCC
Q 025874 139 GRGGHG 144 (247)
Q Consensus 139 G~~~~~ 144 (247)
....+|
T Consensus 197 n~~~R~ 202 (254)
T COG4464 197 NVDKRP 202 (254)
T ss_pred ccCCCC
Confidence 875443
No 21
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=84.30 E-value=0.5 Score=42.87 Aligned_cols=75 Identities=20% Similarity=0.129 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHcCCeEEecCCcCCC----ChHHHHHHHHHcCCcEEEEecCcc----cHHHHHHHHHHcCCceeecC
Q 025874 64 SEPLAEVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVYRSDG----KLVAYTDLADTYGLLKLGGS 135 (247)
Q Consensus 64 ~~~~~~EaI~~Ih~aGGvaVLAHP~~~~----~~~~li~~l~~~GlDGIEv~~~~~----~~~~~~~lA~~~gLl~TGGS 135 (247)
.....++.++.|+..++.+...||+... ......+... -.+.+|++|++. -+.++.+.+..|+....++|
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~h~--~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~ 173 (258)
T COG0613 96 QQLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITRAHI--ARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADS 173 (258)
T ss_pred ccccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchhhhh--hhhhhccccccchHHHHHHHHhccCcccCcccccCH
Confidence 4578899999999999999999998421 1101112221 278999999875 46788888899999999999
Q ss_pred CCCCC
Q 025874 136 DYHGR 140 (247)
Q Consensus 136 DfHG~ 140 (247)
|-|-.
T Consensus 174 ~~~i~ 178 (258)
T COG0613 174 EAHVG 178 (258)
T ss_pred HHHHH
Confidence 99964
No 22
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=80.91 E-value=3.7 Score=36.07 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHcCCceeecC
Q 025874 93 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLGGS 135 (247)
Q Consensus 93 ~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~gLl~TGGS 135 (247)
..+.++.+++.|+||||.+.+.. +.+.+.++++++||-+++-+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~~ 59 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLFN 59 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEEe
Confidence 45788888999999999987643 56788999999999888743
No 23
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=80.60 E-value=4.5 Score=35.78 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=35.2
Q ss_pred hHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHcCCceee
Q 025874 93 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 93 ~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~gLl~TG 133 (247)
.++.++.+.+.|+||||+..+.. +.+.+.++.+++||-+|+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 45788999999999999987543 778999999999999986
No 24
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=76.85 E-value=10 Score=33.91 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc-ccHHHHHHHHHHcC
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYG 128 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~-~~~~~~~~lA~~~g 128 (247)
..+.....++.+=|+|+.++-. ..-..+.+.+++.|++.||+-+.+ .-.+....+++++.
T Consensus 3 ~~~~~~~l~~~~vI~Vlr~~~~-e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p 63 (211)
T COG0800 3 KMKILSKLKAQPVVPVIRGDDV-EEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP 63 (211)
T ss_pred hhHHHHHHHHCCeeEEEEeCCH-HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc
Confidence 3567788889999999988632 122357788889999999997654 44566667777765
No 25
>PRK09989 hypothetical protein; Provisional
Probab=73.14 E-value=7.7 Score=34.28 Aligned_cols=40 Identities=8% Similarity=-0.026 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCcEEEEecCc-ccHHHHHHHHHHcCCceee
Q 025874 94 AAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv~~~~-~~~~~~~~lA~~~gLl~TG 133 (247)
.+.++.+.+.|+||||...+. .+...+.++.+++||-+|+
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 567888899999999996643 4677888999999998886
No 26
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=70.73 E-value=12 Score=30.08 Aligned_cols=48 Identities=25% Similarity=0.187 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHcCCeEEecCCcCCCC----------hHHHHHHH---HHcCCcEEEEecCc
Q 025874 66 PLAEVAVQLIHRTGGLAVLAHPWALKN----------PAAIIRKL---KDVGLHGLEVYRSD 114 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~~----------~~~li~~l---~~~GlDGIEv~~~~ 114 (247)
.+. +.++.+++.|++.|+|||..... .+++++.+ .......+|+..+.
T Consensus 106 ~~~-~~l~~~~~~~~~~i~ah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ein~~~ 166 (175)
T PF02811_consen 106 IPL-ELLEEYKDSGLLIILAHPDGYKFTGIEQKEYEEVEKIIDAFLEAIKKKGFALEINTSG 166 (175)
T ss_dssp ECH-HHHHHHHHTTEEEEECSTTGTCTTCHHCTHHHHHHHHHHHHHHHHHHTTEEEEEEHSC
T ss_pred hHH-HHHHHHHHCCCEEEEeCCCchHHHHHhcCCHHHHHHHHHHHHHHhCcCCEEEEEECCC
Confidence 344 89999999999999999986532 13445544 34467788888765
No 27
>PRK05473 hypothetical protein; Provisional
Probab=70.61 E-value=12 Score=28.90 Aligned_cols=42 Identities=29% Similarity=0.350 Sum_probs=29.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHH
Q 025874 31 HVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLI 75 (247)
Q Consensus 31 HIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~I 75 (247)
.+.++|.+|||-+- .+ .--||-.|.|+|+|. .-++...|+.|
T Consensus 26 ~Vy~AL~EKGYNPi-nQ-iVGYllSGDPaYIts-h~nAR~lIrki 67 (86)
T PRK05473 26 TVYDALEEKGYNPI-NQ-IVGYLLSGDPAYIPR-HNDARNLIRKL 67 (86)
T ss_pred HHHHHHHHcCCChH-HH-HHhhhccCCCCccCC-cccHHHHHHHH
Confidence 47789999999543 33 458999999999986 33444444433
No 28
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=70.15 E-value=8.6 Score=35.88 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=32.3
Q ss_pred cCCcCCC--ChHHHHHHHHHcCCcEEEEecC-----c----------ccHHHHHHHHHHcCCcee
Q 025874 85 AHPWALK--NPAAIIRKLKDVGLHGLEVYRS-----D----------GKLVAYTDLADTYGLLKL 132 (247)
Q Consensus 85 AHP~~~~--~~~~li~~l~~~GlDGIEv~~~-----~----------~~~~~~~~lA~~~gLl~T 132 (247)
=|++|.. ..++.+..++++|++.|++|-+ . .+...+.++|+++||.+.
T Consensus 16 ~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 16 FHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp E-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred eccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 3777664 2357889999999999999853 1 146799999999999653
No 29
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=69.78 E-value=13 Score=35.11 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=19.6
Q ss_pred eCCCCCCHHHHHHHHHHcCCeE-EecCCcC
Q 025874 61 STGSEPLAEVAVQLIHRTGGLA-VLAHPWA 89 (247)
Q Consensus 61 v~~~~~~~~EaI~~Ih~aGGva-VLAHP~~ 89 (247)
++.++-=.++.+++|.+.||+. |-+||..
T Consensus 197 ~~h~RNl~D~qlkaI~~~gGvIgv~~~~~f 226 (313)
T COG2355 197 VDHPRNLSDEQLKAIAETGGVIGVNFIPAF 226 (313)
T ss_pred cCCCCCCCHHHHHHHHhcCCEEEEEeehhh
Confidence 3444434467889999999985 6677753
No 30
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=69.27 E-value=35 Score=30.78 Aligned_cols=99 Identities=13% Similarity=0.155 Sum_probs=63.8
Q ss_pred HcCCCCCHHHH---HHHHhhCCCCc-eeCCCCCCHHHHHHHHHHcCCeEEecCCcCCC-----------------ChHHH
Q 025874 38 EAGHVENLKQA---FARYLYDGGPA-YSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----------------NPAAI 96 (247)
Q Consensus 38 ~~G~v~~~~ea---F~~yL~~g~pa-yv~~~~~~~~EaI~~Ih~aGGvaVLAHP~~~~-----------------~~~~l 96 (247)
+-||-.+..++ -.+++.-|--+ .+.. .....+.|+.+++++ ++|.||=.... ..++.
T Consensus 81 ~~G~g~~~~~~~~~~~~l~~aGa~gv~iED-~~~~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~a 158 (240)
T cd06556 81 PFGAYGAPTAAFELAKTFMRAGAAGVKIEG-GEWHIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCcEEEEcC-cHHHHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHH
Confidence 56777665555 35677655433 2222 234556789999887 89999955311 12244
Q ss_pred HH---HHHHcCCcEEEEecCcccHHHHHHHHHHcCCcee---ecCCCCCC
Q 025874 97 IR---KLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKL---GGSDYHGR 140 (247)
Q Consensus 97 i~---~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~T---GGSDfHG~ 140 (247)
++ .+.++|.|+|-+-.. +.+...+++++..++.. +|+++.|-
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~--~~e~~~~i~~~~~~P~~~~gag~~~dgq 206 (240)
T cd06556 159 IADALAYAPAGADLIVMECV--PVELAKQITEALAIPLAGIGAGSGTDGQ 206 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHhCCCCEEEEecCcCCCce
Confidence 43 445789999877654 77788888888886654 56777774
No 31
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=67.81 E-value=17 Score=32.10 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=34.7
Q ss_pred hHHHHHHHHHcCCcEEEEecCc----------ccHHHHHHHHHHcCCceeecCCCC
Q 025874 93 PAAIIRKLKDVGLHGLEVYRSD----------GKLVAYTDLADTYGLLKLGGSDYH 138 (247)
Q Consensus 93 ~~~li~~l~~~GlDGIEv~~~~----------~~~~~~~~lA~~~gLl~TGGSDfH 138 (247)
.++.++.+.+.|++|||++... .....+.+.++++||-+++.+-.|
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 4678889999999999996321 135778899999999887654444
No 32
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=66.49 E-value=16 Score=34.72 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHcCC-eEEe----cCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcC--Cceeec
Q 025874 65 EPLAEVAVQLIHRTGG-LAVL----AHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGG 134 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aGG-vaVL----AHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~g--Ll~TGG 134 (247)
...++|+|+..|++|- +-|. .|+.........++.+.+.|.|+|++--+ .+..++++.+ |.+..+
T Consensus 48 ~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dp-----g~i~l~~e~~p~l~ih~S 119 (347)
T COG0826 48 VEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADP-----GLIMLARERGPDLPIHVS 119 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCH-----HHHHHHHHhCCCCcEEEe
Confidence 3458899999999998 3332 34433322347889999999999999765 4555666555 655444
No 33
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=66.05 E-value=14 Score=28.15 Aligned_cols=31 Identities=39% Similarity=0.524 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCC
Q 025874 31 HVARAMVEAGHVENLKQAFARYLYDGGPAYSTG 63 (247)
Q Consensus 31 HIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~ 63 (247)
.+.++|-++||-+- .+ .--||-.|.|+|++.
T Consensus 23 ~Vy~AL~EKGYnPi-nQ-ivGYllSGDPaYIts 53 (79)
T PF06135_consen 23 QVYAALEEKGYNPI-NQ-IVGYLLSGDPAYITS 53 (79)
T ss_pred HHHHHHHHcCCChH-HH-HHhheecCCCccccC
Confidence 46789999999543 33 458999999999985
No 34
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=61.70 E-value=19 Score=34.54 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 65 EPLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
-+....+.+.||+.|+.++ |+|+++
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~Gr 108 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAGR 108 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCcc
Confidence 3556789999999999876 588883
No 35
>PRK15447 putative protease; Provisional
Probab=59.64 E-value=75 Score=29.29 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHcCCeEEecCCcCCC-C-hHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCceee
Q 025874 66 PLAEVAVQLIHRTGGLAVLAHPWALK-N-PAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~-~-~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~TG 133 (247)
-++.|+|+.+|++|--++++=|.... + ....+.++.+.|.|+|.|-+. -...+++++++.+-+
T Consensus 48 ~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~-----g~l~~~~e~~~~l~~ 112 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDL-----GAVRLLAERGLPFVA 112 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCH-----HHHHHHHhcCCCEEE
Confidence 46678999999999889998886432 2 224566677889999998663 234566665555433
No 36
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.63 E-value=24 Score=31.36 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=36.1
Q ss_pred cCCcCCCChHHHHHHHHHcCCcEEEEecCc------------ccHHHHHHHHHHcCCceeec-CCCCC
Q 025874 85 AHPWALKNPAAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLGG-SDYHG 139 (247)
Q Consensus 85 AHP~~~~~~~~li~~l~~~GlDGIEv~~~~------------~~~~~~~~lA~~~gLl~TGG-SDfHG 139 (247)
+||..+. ..+.++.+++.|+||||+.... .+...+.+.++++||-+++. ...|.
T Consensus 16 ~~~~~~~-~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~ 82 (283)
T PRK13209 16 ALPAGEC-WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHR 82 (283)
T ss_pred cCCCCCC-HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccc
Confidence 4443322 4578888889999999997431 13567788999999977542 33454
No 37
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.31 E-value=26 Score=26.86 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHH
Q 025874 31 HVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHR 77 (247)
Q Consensus 31 HIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~ 77 (247)
.+.+.|-++||-+- .+ .--||-.|.|||+|+.. +|-..|+.
T Consensus 26 ~VY~sL~ekGYNpi-NQ-iVGYllSGDPaYIpr~n----dARn~IRk 66 (88)
T COG4472 26 DVYNSLEEKGYNPI-NQ-IVGYLLSGDPAYIPRYN----DARNQIRK 66 (88)
T ss_pred HHHHHHHHcCCChH-HH-HHhhhccCCccccCccc----cHHHHHHH
Confidence 46778889999432 33 45788899999999742 44444443
No 38
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.08 E-value=29 Score=32.37 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHcCCeEEe--cCCc
Q 025874 66 PLAEVAVQLIHRTGGLAVL--AHPW 88 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVL--AHP~ 88 (247)
+...+.++.||+.|+.+++ .|.+
T Consensus 82 ~~~~~l~~~vh~~G~~~~~Ql~h~G 106 (338)
T cd04733 82 EAFREWAAAAKANGALIWAQLNHPG 106 (338)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCC
Confidence 4567889999999998765 5643
No 39
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=57.89 E-value=18 Score=32.90 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCeEEecCCcCC--------CChHHHHHHHHHcCCcEEEEecCcc-----cHHHHHHHHHHcCCce
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWAL--------KNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLK 131 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~--------~~~~~li~~l~~~GlDGIEv~~~~~-----~~~~~~~lA~~~gLl~ 131 (247)
+++-|++.|++|=.+. |+.. ...++.+++.++.|++.||+-...- +...+.+.|++.|+.+
T Consensus 56 l~eki~l~~~~gV~v~---~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v 129 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYVY---PGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKV 129 (244)
T ss_dssp HHHHHHHHHCTT-EEE---E-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEE
T ss_pred HHHHHHHHHHcCCeEe---CCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEE
Confidence 7899999999883333 4321 2356789999999999999998753 4467778888888755
No 40
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=57.71 E-value=29 Score=32.57 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 66 PLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
+...+.++.||+.|+.++ |.|+++
T Consensus 77 ~~~~~l~~~vh~~g~~~~~QL~h~G~ 102 (353)
T cd02930 77 AGHRLITDAVHAEGGKIALQILHAGR 102 (353)
T ss_pred HHHHHHHHHHHHcCCEEEeeccCCCC
Confidence 557789999999998864 578765
No 41
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=56.65 E-value=31 Score=32.25 Aligned_cols=67 Identities=13% Similarity=0.304 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcC--CceeecCC
Q 025874 65 EPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 136 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~g--Ll~TGGSD 136 (247)
.|..++.++.||+.||..+.-|+.... ..+++.+.+.|.|.+-+.+...+.. +..++++ +.+-|+=|
T Consensus 197 ~P~~krIi~~ik~~~g~piilH~cG~~--~~~l~~~~e~g~dvl~~d~~~~dl~---eak~~~g~k~~l~GNlD 265 (321)
T cd03309 197 LPRMQRIFDFLRSNTSALIVHHSCGAA--ASLVPSMAEMGVDSWNVVMTANNTA---ELRRLLGDKVVLAGAID 265 (321)
T ss_pred HHHHHHHHHHHHhccCCceEEEeCCCc--HHHHHHHHHcCCCEEEecCCCCCHH---HHHHHhCCCeEEEcCCC
Confidence 355678999999998888888997532 3678889999999988766443443 3344444 45555533
No 42
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=56.61 E-value=27 Score=33.13 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 66 PLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
+...+.++.||+.|+.++ |.|+++
T Consensus 79 ~~~~~lad~vH~~Ga~i~~QL~H~Gr 104 (362)
T PRK10605 79 AAWKKITAGVHAEGGHIAVQLWHTGR 104 (362)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCC
Confidence 456788999999998865 456543
No 43
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=55.91 E-value=29 Score=32.48 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHcCCeEEe--cCCc
Q 025874 66 PLAEVAVQLIHRTGGLAVL--AHPW 88 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVL--AHP~ 88 (247)
+...++++.||+.|+.+++ .|++
T Consensus 80 ~~~k~l~~~vh~~Ga~i~~QL~H~G 104 (341)
T PF00724_consen 80 PGLKKLADAVHAHGAKIIAQLWHAG 104 (341)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEE--G
T ss_pred HHHHHHHHHHHhcCccceeeccccc
Confidence 4567899999999999876 6765
No 44
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=55.70 E-value=42 Score=30.49 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCeEEecCCcC-C-------CChHHHHHHHHHcCCcEEEEecCcc-----cHHHHHHHHHHcCCce
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWA-L-------KNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLK 131 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~-~-------~~~~~li~~l~~~GlDGIEv~~~~~-----~~~~~~~lA~~~gLl~ 131 (247)
++|-|++.|++|=-+. |+. . ...++.+++.++.|+|.||+-...- +..++.+.++++|+.+
T Consensus 43 l~eki~la~~~~V~v~---~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVY---PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHHHHHHHHHcCCeEe---CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE
Confidence 7889999998873333 332 1 1245678899999999999998742 4567888999888765
No 45
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=53.61 E-value=30 Score=30.53 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=28.7
Q ss_pred hHHHHHHHHHcCCcEEEEecCc------------ccHHHHHHHHHHcCCceee
Q 025874 93 PAAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 93 ~~~li~~l~~~GlDGIEv~~~~------------~~~~~~~~lA~~~gLl~TG 133 (247)
.++.++.+.++|+||||+.-.. .+.+.+.+.++++||-+++
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 3567777778888888885321 1346778888999987764
No 46
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=53.14 E-value=35 Score=32.05 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 66 PLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
+...+.++.||+.|+.++ |.|+++
T Consensus 77 ~~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 77 PGFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHHhcCCeEEEeccCCCc
Confidence 345678999999998755 567764
No 47
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=52.49 E-value=15 Score=30.27 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=28.7
Q ss_pred HHHHHHcCCcEEEEecCcc--------cHHHHHHHHHHcCCceee
Q 025874 97 IRKLKDVGLHGLEVYRSDG--------KLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 97 i~~l~~~GlDGIEv~~~~~--------~~~~~~~lA~~~gLl~TG 133 (247)
++.+.++|++|||+..... ....+.++++++|+-+++
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEE
Confidence 3567789999999987542 256889999999998544
No 48
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=52.45 E-value=70 Score=28.90 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHc
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTY 127 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~ 127 (247)
++-++...++|.--|+.|........+++..+++.|++-+=+.+|..+.+++..+++.-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~ 163 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS 163 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC
Confidence 66677777777766777754433344566666677777777777766656665555554
No 49
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=52.26 E-value=39 Score=31.84 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 66 PLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
+...+.++.||+.|+.++ |.|+++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCC
Confidence 556789999999999864 568765
No 50
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.20 E-value=23 Score=32.33 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 66 PLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
....+.++.||+.|+.++ |.|+++
T Consensus 77 ~~~~~~~~~vh~~g~~~~~Ql~h~G~ 102 (327)
T cd02803 77 PGLRKLTEAVHAHGAKIFAQLAHAGR 102 (327)
T ss_pred HHHHHHHHHHHhCCCHhhHHhhCCCc
Confidence 456788999999998754 467654
No 51
>PLN03059 beta-galactosidase; Provisional
Probab=51.51 E-value=25 Score=37.44 Aligned_cols=47 Identities=26% Similarity=0.250 Sum_probs=35.4
Q ss_pred CCcCCC--ChHHHHHHHHHcCCcEEEEecC--c-------------ccHHHHHHHHHHcCCcee
Q 025874 86 HPWALK--NPAAIIRKLKDVGLHGLEVYRS--D-------------GKLVAYTDLADTYGLLKL 132 (247)
Q Consensus 86 HP~~~~--~~~~li~~l~~~GlDGIEv~~~--~-------------~~~~~~~~lA~~~gLl~T 132 (247)
|++|.. ..++.|..++++|++.||.|=+ . .+..++.++|++.||.+.
T Consensus 52 HY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvi 115 (840)
T PLN03059 52 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVH 115 (840)
T ss_pred ccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEE
Confidence 666643 1346788999999999998742 1 146899999999998774
No 52
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.37 E-value=39 Score=31.81 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 65 EPLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
-+...+.++.||+.|+.++ |.|+++
T Consensus 77 i~~~~~l~~~vh~~G~~i~~QL~h~G~ 103 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAILQIFHAGR 103 (353)
T ss_pred hHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3567889999999999865 467654
No 53
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.29 E-value=74 Score=28.12 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHcC
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYG 128 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~g 128 (247)
..+.++.+.+.+=++|+.++-. ....++.+.+.+.|++-||+-.... -.+....+.+++.
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~-~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p 65 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKL-EDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP 65 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCH-HHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCC
Confidence 3467788899999999987632 1223677888889999999986543 3455666666665
No 54
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=48.98 E-value=69 Score=26.88 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=37.9
Q ss_pred HHHHHHHHHc-CCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc--cHHHHHHHHHHcCCce
Q 025874 69 EVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--KLVAYTDLADTYGLLK 131 (247)
Q Consensus 69 ~EaI~~Ih~a-GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~--~~~~~~~lA~~~gLl~ 131 (247)
.+.|+.+++. .++.+.+|-.........++.+.++|.|+|=+..... ....+.+.++++|+..
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~ 106 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEV 106 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeE
Confidence 3567777664 5677777744322222345667778888876665332 3456677777777544
No 55
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=47.56 E-value=34 Score=31.94 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=40.7
Q ss_pred HHHHHHHHHcC-CeEEecC-------CcC-C-CChHHHHHHHHHcCCcE-----EEEecC--------cc----cHHHHH
Q 025874 69 EVAVQLIHRTG-GLAVLAH-------PWA-L-KNPAAIIRKLKDVGLHG-----LEVYRS--------DG----KLVAYT 121 (247)
Q Consensus 69 ~EaI~~Ih~aG-GvaVLAH-------P~~-~-~~~~~li~~l~~~GlDG-----IEv~~~--------~~----~~~~~~ 121 (247)
.+.++.|++.+ ++.+.|- +.. . ....+.+++|+++|++. .|.+++ .+ +.....
T Consensus 106 ~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i 185 (343)
T TIGR03551 106 LDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEII 185 (343)
T ss_pred HHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHH
Confidence 57788887764 5555441 110 0 12357888999999883 466542 11 335667
Q ss_pred HHHHHcCCceeec
Q 025874 122 DLADTYGLLKLGG 134 (247)
Q Consensus 122 ~lA~~~gLl~TGG 134 (247)
+.|++.|+.+++|
T Consensus 186 ~~a~~~Gi~v~s~ 198 (343)
T TIGR03551 186 KTAHKLGIPTTAT 198 (343)
T ss_pred HHHHHcCCcccce
Confidence 8899999876554
No 56
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.83 E-value=85 Score=27.69 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHc----CCceeecC
Q 025874 70 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTY----GLLKLGGS 135 (247)
Q Consensus 70 EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~----gLl~TGGS 135 (247)
+.++.+.+.+=++|+...-. .....+.+.|.+.|+.-||+-.... ..+.+.++++++ ++++-+|+
T Consensus 5 ~~~~~l~~~~vi~vir~~~~-~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGT 74 (213)
T PRK06552 5 EILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGT 74 (213)
T ss_pred HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeee
Confidence 56788899999999876522 2234678888899999999987543 456777888887 36554443
No 57
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=44.73 E-value=31 Score=31.66 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHc--CCceeecCCCC
Q 025874 66 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTY--GLLKLGGSDYH 138 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~--gLl~TGGSDfH 138 (247)
|...+.++.||+.|+-.+.-|.+.. ....++.+++.|+|++.+-+.. +. .+.++++ +..+.||=|-.
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~~-~~---~~~~~~~~~~~~l~Gni~~~ 288 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEKV-DL---AEAKRKLGDKIVLMGNIDPV 288 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TTS--H---HHHHHHHTTSSEEEEEB-G-
T ss_pred HHHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCCC-CH---HHHHHHhCCCeEEECCCCcc
Confidence 3457899999999974566787643 3357888999999999875433 22 2333344 67777887664
No 58
>PRK08309 short chain dehydrogenase; Provisional
Probab=44.21 E-value=13 Score=31.62 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.9
Q ss_pred hcccChhhhhhhHHHHHHHhhccccc
Q 025874 219 SLWLTNEERQSAEFEAIKLKLSHVSI 244 (247)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (247)
|.|||++|.-+-=+++|+.+.+...+
T Consensus 146 ~rwlt~~ei~~gv~~~~~~~~~~~~~ 171 (177)
T PRK08309 146 SRWLTHEEISDGVIKAIESDADEHVV 171 (177)
T ss_pred cccCchHHHHHHHHHHHhcCCCeEEE
Confidence 67999999999999999999887654
No 59
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.10 E-value=65 Score=29.90 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=42.6
Q ss_pred cCCeEE-ecCCcCCCC---h---HHHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceee
Q 025874 78 TGGLAV-LAHPWALKN---P---AAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 78 aGGvaV-LAHP~~~~~---~---~~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TG 133 (247)
.||+.| +|-|.+-.+ + .+.++.+..+|+.||=+--.+. +.....+.|.++|++++|
T Consensus 210 r~gvLvK~aKp~QD~R~DlPtIG~~Ti~~a~kaGlaGIaieagr~lile~e~~l~~Ank~giFI~g 275 (279)
T COG3494 210 RGGVLVKMAKPQQDERADLPTIGPNTIENAAKAGLAGIAIEAGRVLILEREATLKLANKLGIFIVG 275 (279)
T ss_pred cCCEEEEccCCCccccccCCccCHHHHHHHHHcCccceeeecCcEEEeccHHHHHhHhhCCeEEEe
Confidence 577765 677865322 1 3678899999999997766553 678899999999999986
No 60
>PRK08508 biotin synthase; Provisional
Probab=43.62 E-value=1e+02 Score=27.93 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=39.6
Q ss_pred HHHHHHHHHcC-CeEEecCCcCCCChHHHHHHHHHcCCcEEE----Ee---cCc----c---cHHHHHHHHHHcCCceee
Q 025874 69 EVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLE----VY---RSD----G---KLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 69 ~EaI~~Ih~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIE----v~---~~~----~---~~~~~~~lA~~~gLl~TG 133 (247)
.++++.|++.+ ++.+.+=.+.. ..+.+++|+++|+|.+= .- ++. + +.....+.|++.|+-++.
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~s 155 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCS 155 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 57778888876 67665533322 35788899999987753 31 111 1 233455678888875544
Q ss_pred c
Q 025874 134 G 134 (247)
Q Consensus 134 G 134 (247)
|
T Consensus 156 g 156 (279)
T PRK08508 156 G 156 (279)
T ss_pred e
Confidence 3
No 61
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=43.15 E-value=30 Score=31.44 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecC
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 113 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 113 (247)
.++.|+.+|++-|+.| |||..+.. ..+++|.++|+|||=.-+|
T Consensus 218 t~~~V~~~h~~~gl~V--~~WTVN~~-~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 218 TPAAVDCFRRNSKVKI--VLFGINTA-DDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred CHHHHHHHHhcCCcEE--EEEEeCCH-HHHHHHHHcCCCEEEeCCc
Confidence 3678999999834666 46776654 6788899999999855444
No 62
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=43.03 E-value=1.3e+02 Score=27.17 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHcCC-eEEec------------CCcCCCChHHHHHHHHHcCCcEEEEecCccc---HHHHHHHHHHcCC
Q 025874 66 PLAEVAVQLIHRTGG-LAVLA------------HPWALKNPAAIIRKLKDVGLHGLEVYRSDGK---LVAYTDLADTYGL 129 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGG-vaVLA------------HP~~~~~~~~li~~l~~~GlDGIEv~~~~~~---~~~~~~lA~~~gL 129 (247)
.++.|.++.+++... .-+.+ ||... ....++...+.|+|.|-++.+.++ .....++|+++|+
T Consensus 55 ~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~--~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~ 132 (275)
T cd07937 55 EDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDV--VELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGK 132 (275)
T ss_pred CCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHH--HHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCC
Confidence 455777777776543 23333 33211 245667777889999999987654 3566789999997
Q ss_pred ceee
Q 025874 130 LKLG 133 (247)
Q Consensus 130 l~TG 133 (247)
.+..
T Consensus 133 ~v~~ 136 (275)
T cd07937 133 HVEG 136 (275)
T ss_pred eEEE
Confidence 6543
No 63
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=42.93 E-value=42 Score=32.20 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=30.5
Q ss_pred hHHHHHHHHHcCCcEEEEec----Ccc-c-------HHHHHHHHHHcCCceee
Q 025874 93 PAAIIRKLKDVGLHGLEVYR----SDG-K-------LVAYTDLADTYGLLKLG 133 (247)
Q Consensus 93 ~~~li~~l~~~GlDGIEv~~----~~~-~-------~~~~~~lA~~~gLl~TG 133 (247)
+.+.++.+.+.|.||||++. |.. + ...+.+..+++||-+++
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
Confidence 45778888899999999883 321 1 25788889999998554
No 64
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
Probab=42.69 E-value=24 Score=29.94 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=43.3
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCc-eeCC--C-CCCHHHHHHHHHHcCCeEEec
Q 025874 12 LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPA-YSTG--S-EPLAEVAVQLIHRTGGLAVLA 85 (247)
Q Consensus 12 I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~pa-yv~~--~-~~~~~EaI~~Ih~aGGvaVLA 85 (247)
|...++.........++. ..|.+.+++.+..+. .+.|++|... -+|. . ..| +-|++.|.++||-+.+.
T Consensus 80 vn~~~l~~~~~~~~~v~~----~~l~~~~~i~~~~~~-vKvLg~G~l~~~~~~~v~a~~S-~~A~ekIe~aGG~v~~~ 151 (152)
T COG0200 80 VNLGKLAELLPEGEEVTL----ASLKAAGVIRKLKDL-VKVLGNGKLTKAVPVKVKAKAS-KSAIEKIEAAGGKVELI 151 (152)
T ss_pred EEHHHhhhhccccccccH----HHHhhCCeEeccccc-cEEeccCeeccceeEEEEeeeC-HHHHHHHHHcCCEEEec
Confidence 444455444433333443 378899999887765 7899988532 1111 1 333 56999999999988765
No 65
>PRK07094 biotin synthase; Provisional
Probab=41.87 E-value=58 Score=29.81 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEE----EEecCc--------c---cHHHHHHHHHHcCCce
Q 025874 67 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL----EVYRSD--------G---KLVAYTDLADTYGLLK 131 (247)
Q Consensus 67 ~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGI----Ev~~~~--------~---~~~~~~~lA~~~gLl~ 131 (247)
.+.+.++.|++..++.+-.+++.. ..+.++.|+++|++.+ |..++. + +.....+.++++|+.+
T Consensus 104 ~l~~l~~~i~~~~~l~i~~~~g~~--~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 104 KIADIIKEIKKELDVAITLSLGER--SYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHHccCCceEEEecCCC--CHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCee
Confidence 456788888876677776666532 3578889999998854 544421 1 2345567888888743
No 66
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=40.92 E-value=2.3e+02 Score=25.72 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHH-----cCCeEEecCCcCCCChH---HHHHHHHHcCCcEEEEecCcc---c----HHHHHHHHHHcCC
Q 025874 65 EPLAEVAVQLIHR-----TGGLAVLAHPWALKNPA---AIIRKLKDVGLHGLEVYRSDG---K----LVAYTDLADTYGL 129 (247)
Q Consensus 65 ~~~~~EaI~~Ih~-----aGGvaVLAHP~~~~~~~---~li~~l~~~GlDGIEv~~~~~---~----~~~~~~lA~~~gL 129 (247)
.++.+|=.++++. .|.++|++|-+. +.. ++.+...+.|.||+-+..|.+ . .+++.++|+.-++
T Consensus 49 ~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~--~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~ 126 (289)
T cd00951 49 SLTPDEYAQVVRAAVEETAGRVPVLAGAGY--GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDL 126 (289)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 4666664444432 466899998763 333 455666689999999987753 1 3677788887665
Q ss_pred ceeecCCCCCCCCCCCccccCccCCHHHHHHHhc
Q 025874 130 LKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 163 (247)
Q Consensus 130 l~TGGSDfHG~~~~~~~~lG~~~ip~~~l~~i~~ 163 (247)
.+.- |+- + | +.++.+.+.++.+
T Consensus 127 pi~l---Yn~----~----g-~~l~~~~l~~L~~ 148 (289)
T cd00951 127 GVIV---YNR----A----N-AVLTADSLARLAE 148 (289)
T ss_pred CEEE---EeC----C----C-CCCCHHHHHHHHh
Confidence 4433 331 1 1 2356677777653
No 67
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.75 E-value=1.9e+02 Score=26.30 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc--cHHHHHHHHHHcCCceeecCCCCCCCCCCCc
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--KLVAYTDLADTYGLLKLGGSDYHGRGGHGES 146 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~--~~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~ 146 (247)
+|..+.|.+++|++|..-+. ..++.|...|..=|=+..|+- -+++-.++-..+|.=+. ||-|.+-....
T Consensus 88 ~ei~~~ie~~~~v~vvTts~------Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv---~~~~Lgi~dn~ 158 (238)
T COG3473 88 KEIAQRIEEAKGVPVVTTST------AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIV---DFKGLGITDNL 158 (238)
T ss_pred HHHHHHHHhccCCceeechH------HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEE---EeeccCCcccc
Confidence 56778888888888887553 456666677777777777663 35666666667776542 55554433445
Q ss_pred cccCc
Q 025874 147 ELGSV 151 (247)
Q Consensus 147 ~lG~~ 151 (247)
++|+.
T Consensus 159 eigr~ 163 (238)
T COG3473 159 EIGRQ 163 (238)
T ss_pred hhccc
Confidence 56665
No 68
>PRK06256 biotin synthase; Validated
Probab=39.53 E-value=99 Score=28.46 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCcEEEEe---cC--------cc---cHHHHHHHHHHcCCce
Q 025874 94 AAIIRKLKDVGLHGLEVY---RS--------DG---KLVAYTDLADTYGLLK 131 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv~---~~--------~~---~~~~~~~lA~~~gLl~ 131 (247)
.+.++.|+++|++.+-+. ++ .+ +.....+.+++.|+-+
T Consensus 152 ~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v 203 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEP 203 (336)
T ss_pred HHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCee
Confidence 467777888887776331 11 11 1234556677777654
No 69
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=39.19 E-value=1.6e+02 Score=28.48 Aligned_cols=77 Identities=14% Similarity=0.066 Sum_probs=54.5
Q ss_pred hCCCCceeCCCCCCHHHHHHHHHHcCCeEEecC--CcCCCChHHHHHHHHHcCCcEEEEecCc---ccHHHHHHHHHHcC
Q 025874 54 YDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAH--PWALKNPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYG 128 (247)
Q Consensus 54 ~~g~payv~~~~~~~~EaI~~Ih~aGGvaVLAH--P~~~~~~~~li~~l~~~GlDGIEv~~~~---~~~~~~~~lA~~~g 128 (247)
++|...-+| -++.-.+...|-..|..+|.+- |-.+.-..+.+++.+.-...+|=..|-. .+.+.+.++|++||
T Consensus 72 g~GDeVI~p--s~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~~ 149 (374)
T COG0399 72 GPGDEVIVP--SFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRHG 149 (374)
T ss_pred CCCCEEEec--CCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHcC
Confidence 445444444 4677788899999999999884 3333323456676666567888777643 37899999999999
Q ss_pred Ccee
Q 025874 129 LLKL 132 (247)
Q Consensus 129 Ll~T 132 (247)
|.+.
T Consensus 150 l~vI 153 (374)
T COG0399 150 LPVI 153 (374)
T ss_pred CeEE
Confidence 9774
No 70
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=39.13 E-value=2.9e+02 Score=25.12 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHH-----HcCCeEEecCCcCCC--ChHHHHHHHHHcCCcEEEEecCcc----c---HHHHHHHHHHc-CC
Q 025874 65 EPLAEVAVQLIH-----RTGGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG----K---LVAYTDLADTY-GL 129 (247)
Q Consensus 65 ~~~~~EaI~~Ih-----~aGGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~----~---~~~~~~lA~~~-gL 129 (247)
.++.+|-.++++ .+|-++|++|-+... ...++.+...+.|.|||=+..|.. + ..++.++|+.. ++
T Consensus 50 ~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~l 129 (290)
T TIGR00683 50 MLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGL 129 (290)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCC
Confidence 467776555543 234578888865432 123455666778999999977753 1 35677777653 33
Q ss_pred ceeecCCCCCCCCCCCccccCccCCHHHHHHHhc
Q 025874 130 LKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 163 (247)
Q Consensus 130 l~TGGSDfHG~~~~~~~~lG~~~ip~~~l~~i~~ 163 (247)
.+.- ||-|. .-.+.++.+.+.++.+
T Consensus 130 pv~l---Yn~P~------~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 130 NMIV---YSIPF------LTGVNMGIEQFGELYK 154 (290)
T ss_pred CEEE---EeCcc------ccccCcCHHHHHHHhc
Confidence 3321 44431 1123456666666653
No 71
>PLN02705 beta-amylase
Probab=38.95 E-value=83 Score=32.58 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCcEEEE--ecCc--------cc---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccC-c--cCCHHH
Q 025874 94 AAIIRKLKDVGLHGLEV--YRSD--------GK---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-V--KLPVLV 157 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv--~~~~--------~~---~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~-~--~ip~~~ 157 (247)
..-+..|+.+|+|||+| |.+- ++ -..+.+++++.||-+-.==-||.-+. .+|. + ++|.-+
T Consensus 271 ~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGG----NVGD~~~IPLP~WV 346 (681)
T PLN02705 271 RQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGG----NASGNVMISLPQWV 346 (681)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCC----CCCCcccccCCHHH
Confidence 35678899999999965 5542 11 25677899999986655556997542 3553 3 345433
Q ss_pred HHHHhccccccchhHHHHHHhhhhcCCCCCCccchhhcc--ccccCCCCCcCCCchhhhh
Q 025874 158 LNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYG--RGKMLKRNYPLNCGKGLVD 215 (247)
Q Consensus 158 l~~i~~~~~piw~~~~k~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (247)
++...+.- -|+ |..+--..|-+-|. +| ..+.++|-+|+-|=.|++.
T Consensus 347 ~e~g~~nP-Dif----------ftDr~G~rn~EyLS-lg~D~~pvl~GRTplq~Y~DFM~ 394 (681)
T PLN02705 347 LEIGKDNQ-DIF----------FTDREGRRNTECLS-WSIDKERVLKGRTGIEVYFDFMR 394 (681)
T ss_pred HHhcccCC-Cce----------eecCCCCcccceee-eecCcccccCCCCHHHHHHHHHH
Confidence 33222111 011 33333333333333 33 4456667777666666653
No 72
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=38.94 E-value=55 Score=35.18 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHcCCeEEecCCcCC--CChHHHHHHHHHcCCcEEEEecCc-------ccHHHHHHHHHHcCCceeec
Q 025874 64 SEPLAEVAVQLIHRTGGLAVLAHPWAL--KNPAAIIRKLKDVGLHGLEVYRSD-------GKLVAYTDLADTYGLLKLGG 134 (247)
Q Consensus 64 ~~~~~~EaI~~Ih~aGGvaVLAHP~~~--~~~~~li~~l~~~GlDGIEv~~~~-------~~~~~~~~lA~~~gLl~TGG 134 (247)
.+++++|.|+..+.+|.=|| ||+.- ....+..+...++| |.-.-|. .+..+++..|.+-|+++.-|
T Consensus 65 aYL~IdeII~iAk~~gaDaI--hPGYGfLSEn~efA~~c~eaG---I~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipg 139 (1149)
T COG1038 65 AYLSIDEIIRIAKRSGADAI--HPGYGFLSENPEFARACAEAG---ITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPG 139 (1149)
T ss_pred HhccHHHHHHHHHHcCCCee--cCCcccccCCHHHHHHHHHcC---CEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCC
Confidence 47899999999999996666 99632 11224555555554 4445553 24567888999999999888
Q ss_pred CCC
Q 025874 135 SDY 137 (247)
Q Consensus 135 SDf 137 (247)
||=
T Consensus 140 t~~ 142 (1149)
T COG1038 140 TDG 142 (1149)
T ss_pred CCC
Confidence 873
No 73
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.58 E-value=71 Score=30.47 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 66 PLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
+...+.++.||+.|+.++ |.|+++
T Consensus 78 ~~~~~l~d~vh~~Ga~i~~QL~H~Gr 103 (361)
T cd04747 78 AGWKKVVDEVHAAGGKIAPQLWHVGA 103 (361)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCC
Confidence 456788999999998864 578764
No 74
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=37.61 E-value=94 Score=27.43 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCC--cE--EEEecCcc---cHHHHHHHHHHcCCceeecCC
Q 025874 94 AAIIRKLKDVGL--HG--LEVYRSDG---KLVAYTDLADTYGLLKLGGSD 136 (247)
Q Consensus 94 ~~li~~l~~~Gl--DG--IEv~~~~~---~~~~~~~lA~~~gLl~TGGSD 136 (247)
+..++-..-+|+ -| .|+.+... ....+.++|++|+|.+.-++|
T Consensus 145 EaavdL~~lAGl~p~~vicEil~~dG~m~~~~~~~~fA~~~~l~~isi~d 194 (199)
T TIGR00506 145 EASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAKKHNLKLISIED 194 (199)
T ss_pred HHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHH
Confidence 344444445676 34 57777643 568899999999999988877
No 75
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.47 E-value=1.9e+02 Score=25.60 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHcCCeEEecC--CcC-CCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCce
Q 025874 65 EPLAEVAVQLIHRTGGLAVLAH--PWA-LKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLK 131 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aGGvaVLAH--P~~-~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~ 131 (247)
...+++-++...++|.-.|+-| |.. .....+++..+++.|++-+=+.+|..+.+.+..+++.-..+.
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEE
Confidence 4478888899999998888888 432 123456788888999999999999887778777777665443
No 76
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=37.37 E-value=1.8e+02 Score=25.92 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCcEEEEecCcc---cHHHHHHHHHHcCCceee
Q 025874 95 AIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 95 ~li~~l~~~GlDGIEv~~~~~---~~~~~~~lA~~~gLl~TG 133 (247)
..++.+.++|+.||=+-.... +.+...++|+++|++++|
T Consensus 173 ~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~Ad~~gi~i~G 214 (214)
T PF06230_consen 173 DTVENAAEAGLAGLAVEAGKTLILDREEVIALADKAGIFIVG 214 (214)
T ss_pred HHHHHHHHcCCeEEEEecCcEEEecHHHHHHHHHHcCCEEeC
Confidence 578889999999998777653 789999999999999876
No 77
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=36.28 E-value=94 Score=29.18 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 66 PLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
+...+.++.||+.|+.++ |.|+++
T Consensus 77 ~~lr~la~~vh~~ga~~~~QL~H~G~ 102 (338)
T cd02933 77 EGWKKVTDAVHAKGGKIFLQLWHVGR 102 (338)
T ss_pred HHHHHHHHHHHhcCCeEEEEcccCcc
Confidence 455788999999998754 467653
No 78
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=35.88 E-value=2.2e+02 Score=26.00 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc----c-------------HHHHHHHHHHcCC
Q 025874 67 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG----K-------------LVAYTDLADTYGL 129 (247)
Q Consensus 67 ~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~----~-------------~~~~~~lA~~~gL 129 (247)
-+.++|+.++.+|--+.|- --.+ .+.++..+..|.+-||.|.+.+ + .....++|.+.||
T Consensus 112 ~l~~~v~~L~~~GirVSLF---iD~d-~~qi~aa~~~gA~~IELhTG~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL 187 (243)
T COG0854 112 KLRDAVRRLKNAGIRVSLF---IDPD-PEQIEAAAEVGAPRIELHTGPYADAHDAAEQARADAELERLAKAAKLAAELGL 187 (243)
T ss_pred hHHHHHHHHHhCCCeEEEE---eCCC-HHHHHHHHHhCCCEEEEecccccccCChHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3568888888888766552 1112 3567778889999999997642 1 1345578889999
Q ss_pred ceeecCCCCCCCCC
Q 025874 130 LKLGGSDYHGRGGH 143 (247)
Q Consensus 130 l~TGGSDfHG~~~~ 143 (247)
-+-+|-|-+..+-+
T Consensus 188 ~VnAGHgLty~Nv~ 201 (243)
T COG0854 188 KVNAGHGLTYHNVK 201 (243)
T ss_pred eEecCCCccccchH
Confidence 99999887765433
No 79
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=35.78 E-value=19 Score=25.97 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=21.0
Q ss_pred HHHhhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCC
Q 025874 3 LKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 43 (247)
Q Consensus 3 ~kL~~~G~~I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~ 43 (247)
+..++.|++-+..|+.+..+-...-+=.+..++|.++||+.
T Consensus 17 ~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 17 EYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 34455678877777776664221112234556666777764
No 80
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=35.49 E-value=98 Score=29.41 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHcCCeEE--ecCCcC
Q 025874 66 PLAEVAVQLIHRTGGLAV--LAHPWA 89 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaV--LAHP~~ 89 (247)
+...+.++.||+.|+.++ |.|+++
T Consensus 83 ~~~~~l~~~vh~~G~~i~~QL~H~G~ 108 (370)
T cd02929 83 RNLAAMTDAVHKHGALAGIELWHGGA 108 (370)
T ss_pred HHHHHHHHHHHHCCCeEEEecccCCC
Confidence 456788999999998754 567654
No 81
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=35.48 E-value=3.4e+02 Score=24.81 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHH-----HcCCeEEecCCcCCCChH---HHHHHHHHcCCcEEEEecCcc----c---HHHHHHHHHHcC
Q 025874 64 SEPLAEVAVQLIH-----RTGGLAVLAHPWALKNPA---AIIRKLKDVGLHGLEVYRSDG----K---LVAYTDLADTYG 128 (247)
Q Consensus 64 ~~~~~~EaI~~Ih-----~aGGvaVLAHP~~~~~~~---~li~~l~~~GlDGIEv~~~~~----~---~~~~~~lA~~~g 128 (247)
..++.+|=.++++ ..|.++|+||=+. +.. ++.+...+.|.||+-+..|.. + ..++..+|+.-+
T Consensus 55 ~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~--~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~ 132 (303)
T PRK03620 55 FSLTPDEYSQVVRAAVETTAGRVPVIAGAGG--GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD 132 (303)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCcEEEecCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 3477776555543 2455888888653 333 455666678999999987753 1 367888888877
Q ss_pred CceeecCCCCCCCCCCCccccCccCCHHHHHHHh
Q 025874 129 LLKLGGSDYHGRGGHGESELGSVKLPVLVLNDFL 162 (247)
Q Consensus 129 Ll~TGGSDfHG~~~~~~~~lG~~~ip~~~l~~i~ 162 (247)
+.+.- |+.+ | +.++.+.+.++.
T Consensus 133 lpi~l---Yn~~--------g-~~l~~~~l~~L~ 154 (303)
T PRK03620 133 LGVIV---YNRD--------N-AVLTADTLARLA 154 (303)
T ss_pred CCEEE---EcCC--------C-CCCCHHHHHHHH
Confidence 65433 4411 1 346677777776
No 82
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=35.03 E-value=3.6e+02 Score=24.79 Aligned_cols=90 Identities=18% Similarity=0.205 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHH-----HcCCeEEecCCcCCC--ChHHHHHHHHHcCCcEEEEecCcc-------cHHHHHHHHHHc-CC
Q 025874 65 EPLAEVAVQLIH-----RTGGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLADTY-GL 129 (247)
Q Consensus 65 ~~~~~EaI~~Ih-----~aGGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~-------~~~~~~~lA~~~-gL 129 (247)
.++.+|-.++++ ..|.++|++|-+... ...++.+...+.|.||+=+..|.+ -.+++.++|+.- ++
T Consensus 57 ~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~l 136 (309)
T cd00952 57 TLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEM 136 (309)
T ss_pred hCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 466666554443 234599999986533 223456666789999999987753 136788899876 46
Q ss_pred ceeecCCCCCCCCCCCccccCccCCHHHHHHHhc
Q 025874 130 LKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 163 (247)
Q Consensus 130 l~TGGSDfHG~~~~~~~~lG~~~ip~~~l~~i~~ 163 (247)
.+.- ||-|. ..| +.++.+++.++.+
T Consensus 137 Pv~i---Yn~P~-----~tg-~~l~~~~l~~L~~ 161 (309)
T cd00952 137 AIAI---YANPE-----AFK-FDFPRAAWAELAQ 161 (309)
T ss_pred cEEE---EcCch-----hcC-CCCCHHHHHHHhc
Confidence 5543 66542 123 4577788888763
No 83
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=35.01 E-value=1.2e+02 Score=26.82 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHcC
Q 025874 73 QLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYG 128 (247)
Q Consensus 73 ~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~g 128 (247)
+.+.+.+=++|+-..-. ....++.+.+.+.|++.||+-.... ..+...++.+++.
T Consensus 3 ~~l~~~~liaVlr~~~~-e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~ 58 (204)
T TIGR01182 3 ELLREAKIVPVIRIDDV-DDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP 58 (204)
T ss_pred hHHhhCCEEEEEecCCH-HHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC
Confidence 45667777788765421 1223677888899999999976543 3455666666664
No 84
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=34.96 E-value=2.3e+02 Score=24.94 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=45.1
Q ss_pred ceeCCCCCCHHHHHHHHHHcC-CeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-c-HHHHHHHHHHcCC
Q 025874 59 AYSTGSEPLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-K-LVAYTDLADTYGL 129 (247)
Q Consensus 59 ayv~~~~~~~~EaI~~Ih~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-~-~~~~~~lA~~~gL 129 (247)
.|||.-...+ +.|+.|++.+ .+.+-+|=. ..++...++.+.++|.|=|=+..... . .....+.++++|+
T Consensus 44 ~fvpn~~~G~-~~v~~lr~~~~~~~lDvHLm-~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~ 115 (228)
T PTZ00170 44 HFVPNLSFGP-PVVKSLRKHLPNTFLDCHLM-VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGM 115 (228)
T ss_pred ccCCCcCcCH-HHHHHHHhcCCCCCEEEEEC-CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCC
Confidence 4677655554 5778888776 777777754 24466677788888888775443322 2 4566777777774
No 85
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=34.63 E-value=1.1e+02 Score=27.34 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCC--cE--EEEecCcc---cHHHHHHHHHHcCCceeecCC
Q 025874 94 AAIIRKLKDVGL--HG--LEVYRSDG---KLVAYTDLADTYGLLKLGGSD 136 (247)
Q Consensus 94 ~~li~~l~~~Gl--DG--IEv~~~~~---~~~~~~~lA~~~gLl~TGGSD 136 (247)
+..++-..-+|+ -| .|+.+... ....+.++|++|+|.+.-++|
T Consensus 155 EaavdLa~lAGl~p~~vicEil~~dG~ma~~~~~~~fA~~~~l~~isi~d 204 (214)
T PRK01792 155 EAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFGYAVVTIED 204 (214)
T ss_pred HHHHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHHcCCcEEEHHH
Confidence 334443344666 45 57777543 568899999999999988877
No 86
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=34.49 E-value=1.1e+02 Score=27.69 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=37.1
Q ss_pred eEEecCCcCC----CChHHHHHHHHHcCC--cE--EEEecCcc---cHHHHHHHHHHcCCceeecCC
Q 025874 81 LAVLAHPWAL----KNPAAIIRKLKDVGL--HG--LEVYRSDG---KLVAYTDLADTYGLLKLGGSD 136 (247)
Q Consensus 81 vaVLAHP~~~----~~~~~li~~l~~~Gl--DG--IEv~~~~~---~~~~~~~lA~~~gLl~TGGSD 136 (247)
++..|+|+.. ...+..++-..-+|+ -| .|+.+... ....+.++|++|+|.+.-++|
T Consensus 143 fPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~vicEil~~dG~ma~~~~l~~fA~~~~l~iisi~d 209 (230)
T PRK00014 143 FPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAIDE 209 (230)
T ss_pred ceEEecCCCEecCCCccHHHHHHHHHcCCCceEEEEEEeCCCCCccCHHHHHHHHHHcCCcEEEHHH
Confidence 4555666532 123444444445676 45 58877643 568999999999999998888
No 87
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.46 E-value=1.1e+02 Score=28.26 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=46.0
Q ss_pred HHHHHHHHhhCCCCceeCCCCCCHHH---HHHHHHHc-CCeEEecCCcCCCC------hHHHHHHHHHcCCcEEEEec-C
Q 025874 45 LKQAFARYLYDGGPAYSTGSEPLAEV---AVQLIHRT-GGLAVLAHPWALKN------PAAIIRKLKDVGLHGLEVYR-S 113 (247)
Q Consensus 45 ~~eaF~~yL~~g~payv~~~~~~~~E---aI~~Ih~a-GGvaVLAHP~~~~~------~~~li~~l~~~GlDGIEv~~-~ 113 (247)
+|.+-.+=|..|- ++++ .++.+++. -.+++.- +.|.| .+..++++++.|+||+=+-- |
T Consensus 64 Iq~A~~rAL~~g~---------t~~~~lel~~~~r~~~~~~Pivl--m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP 132 (265)
T COG0159 64 IQAAHLRALAAGV---------TLEDTLELVEEIRAKGVKVPIVL--MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLP 132 (265)
T ss_pred HHHHHHHHHHCCC---------CHHHHHHHHHHHHhcCCCCCEEE--EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCC
Confidence 4667677776553 4444 45555533 2333221 12322 35678899999999987654 4
Q ss_pred cccHHHHHHHHHHcCC
Q 025874 114 DGKLVAYTDLADTYGL 129 (247)
Q Consensus 114 ~~~~~~~~~lA~~~gL 129 (247)
..+...+.+.|++||+
T Consensus 133 ~ee~~~~~~~~~~~gi 148 (265)
T COG0159 133 PEESDELLKAAEKHGI 148 (265)
T ss_pred hHHHHHHHHHHHHcCC
Confidence 4566788899998885
No 88
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.36 E-value=1.7e+02 Score=26.19 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHH
Q 025874 66 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLA 124 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA 124 (247)
++..+.++.+.+.+=++|+-..-. ....++.+.+.+.|+.-||+-.... ..+.+.++.
T Consensus 3 m~~~~~~~~l~~~~vi~Vvr~~~~-~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~ 61 (222)
T PRK07114 3 FDRIAVLTAMKATGMVPVFYHADV-EVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELV 61 (222)
T ss_pred CcHHHHHHHHHhCCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHH
Confidence 455678899999999999875421 1223678888899999999987543 333444443
No 89
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=34.20 E-value=89 Score=27.75 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCcEEEEecCc------------ccHHHHHHHHHHcCCceee
Q 025874 94 AAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv~~~~------------~~~~~~~~lA~~~gLl~TG 133 (247)
.+.++.+.+.|+||||+.-+. .+...+.+..+++||-+++
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS 70 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee
Confidence 567888889999999996432 1245678889999998764
No 90
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=34.17 E-value=3.6e+02 Score=24.44 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHH----H-cCCeEEecCCcCCC--ChHHHHHHHHHcCCcEEEEecCcc----c---HHHHHHHHHHcCCc
Q 025874 65 EPLAEVAVQLIH----R-TGGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG----K---LVAYTDLADTYGLL 130 (247)
Q Consensus 65 ~~~~~EaI~~Ih----~-aGGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~----~---~~~~~~lA~~~gLl 130 (247)
.++.+|=.++++ . .|-++|+|+-+... ...++.+...+.|.||+=+..|.. + .+++.++|+.-++.
T Consensus 53 ~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lP 132 (293)
T PRK04147 53 LLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNP 132 (293)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 466666444432 3 34478888876432 122455666678999998887753 1 25677777765543
Q ss_pred eeecCCCCCCCCCCCccccCccCCHHHHHHHhc
Q 025874 131 KLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 163 (247)
Q Consensus 131 ~TGGSDfHG~~~~~~~~lG~~~ip~~~l~~i~~ 163 (247)
+.- |+-| ....+.++.+.+.+|.+
T Consensus 133 v~i---Yn~P------~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 133 MIV---YNIP------ALTGVNLSLDQFNELFT 156 (293)
T ss_pred EEE---EeCc------hhhccCCCHHHHHHHhc
Confidence 321 3322 12233456666666653
No 91
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=33.95 E-value=2.2e+02 Score=25.84 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-------c-------HHHHHHHHHHcCCcee
Q 025874 67 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-------K-------LVAYTDLADTYGLLKL 132 (247)
Q Consensus 67 ~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-------~-------~~~~~~lA~~~gLl~T 132 (247)
.+.++|+.++++|=.+.|- --.+ .+.++..++.|.|-||.|.+.+ + .....++|.+.||-+-
T Consensus 111 ~l~~~i~~l~~~gI~VSLF---iDPd-~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~Vn 186 (234)
T cd00003 111 KLKPIIERLKDAGIRVSLF---IDPD-PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVN 186 (234)
T ss_pred HHHHHHHHHHHCCCEEEEE---eCCC-HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 3567888999888665542 1112 3677778889999999997532 1 1345688899999999
Q ss_pred ecCCCC
Q 025874 133 GGSDYH 138 (247)
Q Consensus 133 GGSDfH 138 (247)
+|-|-.
T Consensus 187 AGHgLn 192 (234)
T cd00003 187 AGHGLN 192 (234)
T ss_pred cCCCCC
Confidence 995533
No 92
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=33.94 E-value=1.6e+02 Score=26.17 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=52.2
Q ss_pred HHHHHHhh----CCCCceeCCCC--CCHHHHHHHHHHcCCeE---EecCCcCCCChHHHHHHHHHcC----CcEEEEec-
Q 025874 47 QAFARYLY----DGGPAYSTGSE--PLAEVAVQLIHRTGGLA---VLAHPWALKNPAAIIRKLKDVG----LHGLEVYR- 112 (247)
Q Consensus 47 eaF~~yL~----~g~payv~~~~--~~~~EaI~~Ih~aGGva---VLAHP~~~~~~~~li~~l~~~G----lDGIEv~~- 112 (247)
++|.+.+. .|.|-.+-... ....+.++.+++.|-.. |++|+++..+. +.+.++++.| ++|.=.+.
T Consensus 136 ~~f~~~~~lA~~~~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~-~~~~~~~~~G~~i~~~~~~~~~~ 214 (293)
T cd00530 136 KVLRAAARAQKETGVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDP-DYLLKIAALGAYLEFDGIGKDKI 214 (293)
T ss_pred HHHHHHHHHHHHHCCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCH-HHHHHHHhCCCEEEeCCCCcccc
Confidence 45555442 25554443332 36778899998876433 89999865543 5677787776 33322221
Q ss_pred ----Ccc-cHHHHHHHHHHcCC-ceeecCCCCCC
Q 025874 113 ----SDG-KLVAYTDLADTYGL-LKLGGSDYHGR 140 (247)
Q Consensus 113 ----~~~-~~~~~~~lA~~~gL-l~TGGSDfHG~ 140 (247)
+.. ..+.+.+++++-.+ -++-+||.|..
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~d~ill~TD~p~~ 248 (293)
T cd00530 215 FGYPSDETRADAVKALIDEGYGDRLLLSHDVFRK 248 (293)
T ss_pred cCCCCHHHHHHHHHHHHHCCCcCCEEEeCCcCch
Confidence 111 22345555555322 33669999875
No 93
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=33.75 E-value=2.3e+02 Score=25.84 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-------c-------HHHHHHHHHHcCCceee
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-------K-------LVAYTDLADTYGLLKLG 133 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-------~-------~~~~~~lA~~~gLl~TG 133 (247)
+.++|+.++++|=.+.|- --.+ .+.++..++.|.|-||.|.+.+ + .....++|.+.||-+-+
T Consensus 112 l~~~i~~l~~~gI~VSLF---iDP~-~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA 187 (237)
T TIGR00559 112 LCELVKRFHAAGIEVSLF---IDAD-KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVNA 187 (237)
T ss_pred HHHHHHHHHHCCCEEEEE---eCCC-HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec
Confidence 568889998888665542 1112 3677888889999999997532 1 13456888999999999
Q ss_pred cCCCC
Q 025874 134 GSDYH 138 (247)
Q Consensus 134 GSDfH 138 (247)
|-|-.
T Consensus 188 GHgLn 192 (237)
T TIGR00559 188 GHGLN 192 (237)
T ss_pred CCCCC
Confidence 95543
No 94
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.58 E-value=2.5e+02 Score=25.44 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=18.5
Q ss_pred HHHHHHHHHcCCcEEEEec-CcccHHHHHHHHHHcCC
Q 025874 94 AAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 129 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv~~-~~~~~~~~~~lA~~~gL 129 (247)
+..+++++++|+||+=+-- |..+...+.+.|++|||
T Consensus 107 e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl 143 (258)
T PRK13111 107 ERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGL 143 (258)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCC
Confidence 4556666666666654421 11234455555566654
No 95
>PRK15108 biotin synthase; Provisional
Probab=33.31 E-value=97 Score=29.18 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=21.8
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEE
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 108 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGI 108 (247)
.++++.|++. |+.+.++.+.. ..+.+++|+++|+|++
T Consensus 114 ~~~i~~ik~~-~i~v~~s~G~l--s~e~l~~LkeAGld~~ 150 (345)
T PRK15108 114 EQMVQGVKAM-GLETCMTLGTL--SESQAQRLANAGLDYY 150 (345)
T ss_pred HHHHHHHHhC-CCEEEEeCCcC--CHHHHHHHHHcCCCEE
Confidence 3555556544 34454554422 2567788888888853
No 96
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=33.22 E-value=1e+02 Score=27.41 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCeEEec----CCcCCCChHHHHHHHHHcCCcEEEEec-CcccHHHHHHHHHHcCC
Q 025874 70 VAVQLIHRTGGLAVLA----HPWALKNPAAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 129 (247)
Q Consensus 70 EaI~~Ih~aGGvaVLA----HP~~~~~~~~li~~l~~~GlDGIEv~~-~~~~~~~~~~lA~~~gL 129 (247)
+.++.+++.--+++.- .|......+..++.++++|.|||=+.. +..+...+.+.++++|+
T Consensus 66 ~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~ 130 (242)
T cd04724 66 ELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGL 130 (242)
T ss_pred HHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCC
No 97
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=32.97 E-value=1.2e+02 Score=27.14 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCC--cE--EEEecCcc---cHHHHHHHHHHcCCceeecCC
Q 025874 94 AAIIRKLKDVGL--HG--LEVYRSDG---KLVAYTDLADTYGLLKLGGSD 136 (247)
Q Consensus 94 ~~li~~l~~~Gl--DG--IEv~~~~~---~~~~~~~lA~~~gLl~TGGSD 136 (247)
+..++-..-+|+ -| .|+.+... ....+.++|++|+|.+.-++|
T Consensus 156 EaavdLa~lAGl~p~~vicEil~~dG~ma~~~~l~~fA~~h~l~~isi~d 205 (218)
T PRK00910 156 EGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLHNMPVLTIED 205 (218)
T ss_pred HHHHHHHHHcCCCceEEEEEEecCCCCcCCHHHHHHHHHHcCCcEEEHHH
Confidence 444444445676 45 57877643 568899999999999988887
No 98
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=32.61 E-value=2.4e+02 Score=25.72 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-----c--------HHHHHHHHHHcCCceeec
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-----K--------LVAYTDLADTYGLLKLGG 134 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-----~--------~~~~~~lA~~~gLl~TGG 134 (247)
+.++|+.++++|-.+.|- --.+ .+.++..++.|.|-||.|.+.+ . .....++|.++||-+-+|
T Consensus 115 l~~~i~~L~~~gIrVSLF---idP~-~~qi~~A~~~GAd~VELhTG~yA~a~~~~~~~el~~~~~aa~~a~~lGL~VnAG 190 (239)
T PRK05265 115 LKPAIARLKDAGIRVSLF---IDPD-PEQIEAAAEVGADRIELHTGPYADAKTEAEAAELERIAKAAKLAASLGLGVNAG 190 (239)
T ss_pred HHHHHHHHHHCCCEEEEE---eCCC-HHHHHHHHHhCcCEEEEechhhhcCCCcchHHHHHHHHHHHHHHHHcCCEEecC
Confidence 567888898888554442 1112 3677888889999999997531 1 245568899999999999
Q ss_pred CCC
Q 025874 135 SDY 137 (247)
Q Consensus 135 SDf 137 (247)
-|-
T Consensus 191 HgL 193 (239)
T PRK05265 191 HGL 193 (239)
T ss_pred CCC
Confidence 443
No 99
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=32.59 E-value=1.6e+02 Score=27.68 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCc-----EEEEecC--------cc-c-H--HHHHHHHHHcCCceeec
Q 025874 94 AAIIRKLKDVGLH-----GLEVYRS--------DG-K-L--VAYTDLADTYGLLKLGG 134 (247)
Q Consensus 94 ~~li~~l~~~GlD-----GIEv~~~--------~~-~-~--~~~~~lA~~~gLl~TGG 134 (247)
++.+++|+++|+| |+|.++. .+ . . ....+.|++.|+-.++|
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg 207 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNAT 207 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceE
Confidence 3557889999975 7888752 12 1 2 25678899999877665
No 100
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=32.32 E-value=1.8e+02 Score=26.13 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCceeecCCC
Q 025874 95 AIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDY 137 (247)
Q Consensus 95 ~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~TGGSDf 137 (247)
..+..++++|+..|=..|.... ..+.++|+++||++......
T Consensus 40 ~d~~l~k~~G~N~iR~~h~p~~-~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 40 RDLELMKEMGFNAIRTHHYPPS-PRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp HHHHHHHHTT-SEEEETTS--S-HHHHHHHHHHT-EEEEE-S-
T ss_pred HHHHHHHhcCcceEEcccccCc-HHHHHHHhhcCCEEEEeccc
Confidence 4466788999999988664333 57788999999999866555
No 101
>PLN02905 beta-amylase
Probab=31.86 E-value=1.6e+02 Score=30.77 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCcEEEE--ecCcc--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccC-c--cCCHHH
Q 025874 94 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-V--KLPVLV 157 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv--~~~~~--------~---~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~-~--~ip~~~ 157 (247)
..-+..|+.+|+|||+| |.+-- + -..+.+++++.||-.-.==-||.-+. .+|. + ++|.-+
T Consensus 289 ~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGG----NVGD~~~IPLP~WV 364 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGG----NVGDDVCIPLPHWV 364 (702)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCCcccccCCHHH
Confidence 35678899999999975 55421 1 25677889999986655556997542 3553 2 345433
Q ss_pred HHHHhccccccchhHHHHHHhhhhcCCCCCCccchhhcc--ccccCCCCCcCCCchhhhh
Q 025874 158 LNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYG--RGKMLKRNYPLNCGKGLVD 215 (247)
Q Consensus 158 l~~i~~~~~piw~~~~k~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (247)
++...+ ..-|+ |..+--..|-+-|. +| ..+.++|-+|+-|=.|++.
T Consensus 365 ~e~g~~-nPDif----------ftDrsG~rn~EyLS-lg~D~~pvl~GRTplq~Y~DFM~ 412 (702)
T PLN02905 365 AEIGRS-NPDIF----------FTDREGRRNPECLS-WGIDKERILRGRTALEVYFDYMR 412 (702)
T ss_pred HHhhhc-CCCce----------EecCCCCccCceee-eecccccccCCCCHHHHHHHHHH
Confidence 322211 01111 33333344444444 44 4566677777777666654
No 102
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=31.07 E-value=1.2e+02 Score=27.87 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHcC-CeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcC--Cceeec
Q 025874 65 EPLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGG 134 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~g--Ll~TGG 134 (247)
.|...++++.|++.| |+.|+=|.+. ...+++.+++.|.+++-+-+. .+. .+..+.++ ..+.|+
T Consensus 214 ~P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~-~dl---~e~k~~~g~~~~i~Gn 279 (335)
T cd00717 214 LPYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWR-VDL---DEARKRLGPKVALQGN 279 (335)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCC-CCH---HHHHHHhCCCeEEEeC
Confidence 356678999999987 7778777653 236889999999999866553 232 33444555 444453
No 103
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed
Probab=31.05 E-value=37 Score=28.41 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=25.5
Q ss_pred HHHHhhCCC---CceeCCCCCCHHHHHHHHHHcCCeEEec
Q 025874 49 FARYLYDGG---PAYSTGSEPLAEVAVQLIHRTGGLAVLA 85 (247)
Q Consensus 49 F~~yL~~g~---payv~~~~~~~~EaI~~Ih~aGGvaVLA 85 (247)
|.+.|+.|. |--|.....| +.|++.|.++||.+++.
T Consensus 107 ~~KVLG~G~l~~pl~Vka~~fS-~~A~ekIe~aGG~v~l~ 145 (148)
T PRK06419 107 YDKVLGGGKVTRPLVIKADAFS-EKAIEKIEAAGGEVVLS 145 (148)
T ss_pred ceEEeCCCccCcCEEEEEeccC-HHHHHHHHHcCCEEEEe
Confidence 457787775 3344445555 56999999999999874
No 104
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=30.70 E-value=1.8e+02 Score=27.25 Aligned_cols=81 Identities=16% Similarity=0.303 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHH--HHh-hCCCC----------ceeCC--CCCCHHHHHHHHHHcCCeEEecCCcCCC
Q 025874 27 PGRLHVARAMVEAGHVENLKQAFA--RYL-YDGGP----------AYSTG--SEPLAEVAVQLIHRTGGLAVLAHPWALK 91 (247)
Q Consensus 27 igRpHIA~aLv~~G~v~~~~eaF~--~yL-~~g~p----------ayv~~--~~~~~~EaI~~Ih~aGGvaVLAHP~~~~ 91 (247)
..+| .|+++|...+.+|... .|+ ..|.+ .|-.. ..+++. +|.++++--=++|++-|....
T Consensus 151 ~~kP----vLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~-aV~~~kq~THLPVivDpSH~~ 225 (286)
T COG2876 151 QNKP----VLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDIS-AVPILKQETHLPVIVDPSHAT 225 (286)
T ss_pred cCCC----eEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechH-HHHHHHhhcCCCEEECCCCcc
Confidence 4566 6777888888877542 454 33322 23222 335554 788899998999999886432
Q ss_pred C----hHHHHHHHHHcCCcEE--EEec
Q 025874 92 N----PAAIIRKLKDVGLHGL--EVYR 112 (247)
Q Consensus 92 ~----~~~li~~l~~~GlDGI--Ev~~ 112 (247)
. ...+-...++.|-||| ||+.
T Consensus 226 Grr~lv~pla~AA~AaGAdglmiEVHp 252 (286)
T COG2876 226 GRRDLVEPLAKAAIAAGADGLMIEVHP 252 (286)
T ss_pred cchhhHHHHHHHHHhccCCeeEEEecC
Confidence 2 2234445557899998 5654
No 105
>PLN02417 dihydrodipicolinate synthase
Probab=30.66 E-value=3.9e+02 Score=24.10 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=15.6
Q ss_pred CCeEEecCCcCCC--ChHHHHHHHHHcCCcEEEEecC
Q 025874 79 GGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRS 113 (247)
Q Consensus 79 GGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~ 113 (247)
|.++|++|-+... ...++.+...+.|.||+=+..|
T Consensus 69 ~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 69 GKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred CCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3355555544321 1112333344556666555544
No 106
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=30.30 E-value=26 Score=20.86 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCCCC
Q 025874 31 HVARAMVEAGHVEN 44 (247)
Q Consensus 31 HIA~aLv~~G~v~~ 44 (247)
.|.++|++.||..+
T Consensus 6 lI~~YL~~~Gy~~t 19 (27)
T PF08513_consen 6 LIYDYLVENGYKET 19 (27)
T ss_dssp HHHHHHHHCT-HHH
T ss_pred HHHHHHHHCCcHHH
Confidence 48999999999765
No 107
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=29.69 E-value=1.1e+02 Score=26.66 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCcEEEEecCc-c--c---HHHHHHHHHHcCCceee
Q 025874 95 AIIRKLKDVGLHGLEVYRSD-G--K---LVAYTDLADTYGLLKLG 133 (247)
Q Consensus 95 ~li~~l~~~GlDGIEv~~~~-~--~---~~~~~~lA~~~gLl~TG 133 (247)
..++..++.|.+|||+.... . . ...+.+..+++||-+++
T Consensus 19 ~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 19 EILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITS 63 (274)
T ss_pred HHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEe
Confidence 45555555666666666411 1 1 35555566666665554
No 108
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=29.20 E-value=86 Score=27.89 Aligned_cols=37 Identities=8% Similarity=0.158 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEE
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 109 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIE 109 (247)
++.|+.+|++| +.|. +|..+. ...+..+.++|+|||.
T Consensus 213 ~~~v~~~~~~g-~~v~--~WTVn~-~~~~~~l~~~GVdgIi 249 (252)
T cd08574 213 AQEIREYSKAN-ISVN--LYVVNE-PWLYSLLWCSGVQSVT 249 (252)
T ss_pred HHHHHHHHHCC-CEEE--EEccCC-HHHHHHHHHcCCCEEe
Confidence 45666666664 4443 344443 3456667777787775
No 109
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=29.09 E-value=43 Score=23.82 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=25.6
Q ss_pred ccCCHHHHHHHhccccccchhHHHHHHhhhh
Q 025874 151 VKLPVLVLNDFLKVARPIWCGAIKEILESYA 181 (247)
Q Consensus 151 ~~ip~~~l~~i~~~~~piw~~~~k~~l~~~~ 181 (247)
+.+..++++.|++.... |+..|.++|++++
T Consensus 33 irld~dVl~~fka~G~g-yQtriN~~Lr~~~ 62 (62)
T PF14384_consen 33 IRLDPDVLEWFKAQGKG-YQTRINEALRKYV 62 (62)
T ss_pred EEeCHHHHHHHHHHChh-HHHHHHHHHHHhC
Confidence 45788999999997766 9999999998764
No 110
>PRK12677 xylose isomerase; Provisional
Probab=29.06 E-value=1.1e+02 Score=29.29 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=29.7
Q ss_pred hHHHHHHHHHcCCcEEEEecC----c---c-----cHHHHHHHHHHcCCceee
Q 025874 93 PAAIIRKLKDVGLHGLEVYRS----D---G-----KLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 93 ~~~li~~l~~~GlDGIEv~~~----~---~-----~~~~~~~lA~~~gLl~TG 133 (247)
..+.++.+.+.|++|||++.. . . ....+.+.++++||-+++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEE
Confidence 456777888889999998732 1 1 145778888999998664
No 111
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=29.05 E-value=53 Score=20.34 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCcEEEE
Q 025874 94 AAIIRKLKDVGLHGLEV 110 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv 110 (247)
...++++.++|+|||=.
T Consensus 10 ~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHcCCCEeeC
Confidence 46788999999999854
No 112
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=28.76 E-value=4.9e+02 Score=24.80 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcCCe--EEecCCcCCCChHHHHHHHHHcCCc
Q 025874 29 RLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGL--AVLAHPWALKNPAAIIRKLKDVGLH 106 (247)
Q Consensus 29 RpHIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aGGv--aVLAHP~~~~~~~~li~~l~~~GlD 106 (247)
+--||+.|.+.|.- .+ |+ -++ -.|.++|.- -+.+|+++.|+...++ .+++ | + ..-++...++|+|
T Consensus 70 Ki~ia~~L~~~GV~-~I-Ev--Gs~--vspk~vPqm-ad~~ev~~~i~~~~~~~~~~l~-~----n-~~die~A~~~g~~ 136 (347)
T PLN02746 70 KVELIQRLVSSGLP-VV-EA--TSF--VSPKWVPQL-ADAKDVMAAVRNLEGARFPVLT-P----N-LKGFEAAIAAGAK 136 (347)
T ss_pred HHHHHHHHHHcCCC-EE-EE--CCC--cCccccccc-ccHHHHHHHHHhccCCceeEEc-C----C-HHHHHHHHHcCcC
Confidence 45688899998852 11 11 011 245556653 3667888888875544 3343 2 2 3556777889999
Q ss_pred EEEEecCcc-----------------cHHHHHHHHHHcCCce------eecCCCCCC
Q 025874 107 GLEVYRSDG-----------------KLVAYTDLADTYGLLK------LGGSDYHGR 140 (247)
Q Consensus 107 GIEv~~~~~-----------------~~~~~~~lA~~~gLl~------TGGSDfHG~ 140 (247)
.|-++-|.. ......++|+++|+.+ +=|..|.+.
T Consensus 137 ~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r 193 (347)
T PLN02746 137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP 193 (347)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC
Confidence 999985421 1235678999999877 245555554
No 113
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=28.47 E-value=50 Score=30.42 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=46.7
Q ss_pred HHHHhhCCCCceeCCCCCCHHHHHHHHHHcC---CeEEecCCcCCCC-hHHHHHHHHHcCCc-----EEEEecCc-----
Q 025874 49 FARYLYDGGPAYSTGSEPLAEVAVQLIHRTG---GLAVLAHPWALKN-PAAIIRKLKDVGLH-----GLEVYRSD----- 114 (247)
Q Consensus 49 F~~yL~~g~payv~~~~~~~~EaI~~Ih~aG---GvaVLAHP~~~~~-~~~li~~l~~~GlD-----GIEv~~~~----- 114 (247)
|.-||+.|.|.|.|.+. +.+.++.|.+.. ++.+-++|..... ..+++.++...|++ |+|..++.
T Consensus 79 ~~iyf~ggt~t~l~~~~--L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 79 FIAYFQAYTNTYAPVEV--LKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEEEECCCcCCCCHHH--HHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 44578888877776532 345566666543 4666777864431 12345555566873 44444432
Q ss_pred ---c---cHHHHHHHHHHcCCce
Q 025874 115 ---G---KLVAYTDLADTYGLLK 131 (247)
Q Consensus 115 ---~---~~~~~~~lA~~~gLl~ 131 (247)
+ +...+.+.++++|+-+
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v 179 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKV 179 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEE
Confidence 1 3456667788888754
No 114
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=28.32 E-value=1.1e+02 Score=26.45 Aligned_cols=39 Identities=23% Similarity=0.552 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEec
Q 025874 70 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 112 (247)
Q Consensus 70 EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~ 112 (247)
+.|+.+|++ |+.|.. |..+. ...+..+...|+|||..-+
T Consensus 191 ~~i~~~~~~-g~~v~~--Wtvn~-~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 191 EVVEELKKR-GIPVRL--WTVNE-EEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHHC-CCEEEE--EecCC-HHHHHHHHHCCCCEEeCCC
Confidence 455555555 333332 22222 3556666677777776543
No 115
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=28.23 E-value=56 Score=29.82 Aligned_cols=46 Identities=28% Similarity=0.417 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCceeecCCCCC
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHG 139 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~TGGSDfHG 139 (247)
..=++.|..+||++++= |.. .+ ...+..++. -+| ||+.|||||.|=
T Consensus 29 ~~yv~ai~~aGg~pill-P~~-~d-~~~~~~~l~-~iD---------------------gliltGg~nV~P 74 (243)
T COG2071 29 YDYVDAIIKAGGIPILL-PAL-ED-PEDARQYLD-LID---------------------GLILTGGSNVDP 74 (243)
T ss_pred HHHHHHHHHcCCceEEe-cCC-CC-HHHHHHHHh-hcc---------------------EEEecCCCcCCH
Confidence 34456666689988876 421 11 123333322 244 578999999883
No 116
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.07 E-value=1.5e+02 Score=26.22 Aligned_cols=17 Identities=12% Similarity=0.515 Sum_probs=10.2
Q ss_pred HHHHHHHHHcCCcEEEE
Q 025874 94 AAIIRKLKDVGLHGLEV 110 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv 110 (247)
...++.+++.|+|+||+
T Consensus 13 ~~~l~~a~~~G~d~vEl 29 (279)
T cd00019 13 ENALKRAKEIGFDTVAM 29 (279)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34555556666666665
No 117
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=27.98 E-value=5e+02 Score=24.77 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=61.0
Q ss_pred HHHHHHHHHHc-CCCCC----------HHH----HHHHHhhCCCCceeCC-CCCCHHHHHHHHHHcCCeEEecC--Cc--
Q 025874 29 RLHVARAMVEA-GHVEN----------LKQ----AFARYLYDGGPAYSTG-SEPLAEVAVQLIHRTGGLAVLAH--PW-- 88 (247)
Q Consensus 29 RpHIA~aLv~~-G~v~~----------~~e----aF~~yL~~g~payv~~-~~~~~~EaI~~Ih~aGGvaVLAH--P~-- 88 (247)
|..||+.+-++ |+.-+ -++ +|.-++.+|...-+|. .|++.. ..+.-+||.+|.-. +.
T Consensus 71 Reaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~---~~~~~~gg~~v~v~l~~~~~ 147 (393)
T COG0436 71 REAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYE---AAVKLAGGKPVPVPLDEEEN 147 (393)
T ss_pred HHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHH---HHHHhcCCEEEEEeCCcCcc
Confidence 67778777765 31111 122 4556777776555554 345544 45567899988875 21
Q ss_pred CCCChHHHHHHHHHcCCcEEEEecCcc---------cHHHHHHHHHHcCCcee
Q 025874 89 ALKNPAAIIRKLKDVGLHGLEVYRSDG---------KLVAYTDLADTYGLLKL 132 (247)
Q Consensus 89 ~~~~~~~li~~l~~~GlDGIEv~~~~~---------~~~~~~~lA~~~gLl~T 132 (247)
.+.-..+.+++.+..-...|=+.+|.+ +.+.+.++|++|++++.
T Consensus 148 ~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii 200 (393)
T COG0436 148 GFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIII 200 (393)
T ss_pred CCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 111122445555444677887777764 24788899999998764
No 118
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.82 E-value=1.2e+02 Score=26.29 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 114 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 114 (247)
.+.|+.+|++| +.|.+. ..+. ...++.+...|+|||..-+|.
T Consensus 191 ~~~v~~~~~~G-~~v~~w--Tvn~-~~~~~~l~~~GVdgi~TD~p~ 232 (233)
T cd08582 191 PAFIKALRDAG-LKLNVW--TVDD-AEDAKRLIELGVDSITTNRPG 232 (233)
T ss_pred HHHHHHHHHCC-CEEEEE--eCCC-HHHHHHHHHCCCCEEEcCCCC
Confidence 45677777764 555443 3333 356677888888888776653
No 119
>PLN02803 beta-amylase
Probab=27.75 E-value=1.2e+02 Score=30.94 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCcEEEE--ecCcc--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccC-c--cCCHHH
Q 025874 94 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-V--KLPVLV 157 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv--~~~~~--------~---~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~-~--~ip~~~ 157 (247)
..-+..|+.+|+|||+| |.+-- + -..+.+++++.||-+-.==-||.-+. .+|. + ++|.-+
T Consensus 110 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG----NVGD~~~IpLP~WV 185 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGG----NVGDSCSIPLPPWV 185 (548)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCCcccccCCHHH
Confidence 35678899999999965 55421 1 25677899999987666556997542 3553 2 345544
Q ss_pred HHHHhccccccchhHHHHHHhhhhcCCCCCCccchhh-ccccccCCCCCcCCCchhhhh
Q 025874 158 LNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITR-YGRGKMLKRNYPLNCGKGLVD 215 (247)
Q Consensus 158 l~~i~~~~~piw~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 215 (247)
++...+. .-|+ |..+--..|-+-|.= ....+.++|-+|+-|=.|++.
T Consensus 186 ~e~~~~~-pDi~----------ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~ 233 (548)
T PLN02803 186 LEEMSKN-PDLV----------YTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMR 233 (548)
T ss_pred HHhhhcC-CCce----------EecCCCCcccceeccccccchhccCCCHHHHHHHHHH
Confidence 3322211 0011 222222222222221 123456777777777777664
No 120
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=27.71 E-value=1.4e+02 Score=31.20 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHcC-CeE--EecCCcC
Q 025874 67 LAEVAVQLIHRTG-GLA--VLAHPWA 89 (247)
Q Consensus 67 ~~~EaI~~Ih~aG-Gva--VLAHP~~ 89 (247)
...++++.||+.| +.+ =|.|+++
T Consensus 476 ~~~~~~~~vh~~gg~~i~~QL~h~Gr 501 (765)
T PRK08255 476 AWKRIVDFVHANSDAKIGIQLGHSGR 501 (765)
T ss_pred HHHHHHHHHHhcCCceEEEEccCCcc
Confidence 5667899999995 554 3567554
No 121
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=27.63 E-value=2.6e+02 Score=25.27 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=27.9
Q ss_pred eEEecCCcCCCChHHHHHHHHHcCCcEEEEecCccc---HHHHHHHHHHcCCce
Q 025874 81 LAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK---LVAYTDLADTYGLLK 131 (247)
Q Consensus 81 vaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~---~~~~~~lA~~~gLl~ 131 (247)
+.+++.|.+.. ...++...+.|+|.|=++.+.+. .....++|+++|+-+
T Consensus 74 ~~~~~~~~~~~--~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v 125 (266)
T cd07944 74 IAVMVDYGNDD--IDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEV 125 (266)
T ss_pred EEEEECCCCCC--HHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeE
Confidence 44555554322 24455556677777777665442 345667777777644
No 122
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=27.56 E-value=1.2e+02 Score=25.86 Aligned_cols=10 Identities=20% Similarity=0.249 Sum_probs=7.1
Q ss_pred CHHHHHHHhC
Q 025874 13 KWEHVAKIAG 22 (247)
Q Consensus 13 ~~eev~~~a~ 22 (247)
+++|+++.+.
T Consensus 88 tl~evl~~~~ 97 (229)
T cd08562 88 TLADVLELAR 97 (229)
T ss_pred CHHHHHHHHH
Confidence 7788877663
No 123
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=27.48 E-value=4.1e+02 Score=23.39 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCceeecC
Q 025874 67 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGS 135 (247)
Q Consensus 67 ~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~TGGS 135 (247)
+|+.-|+...++|.-.|.-|.-......+.+..+++.|+..-=+.+|......+..+...-+++..-+.
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV 137 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSV 137 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEe
Confidence 466677777777777777777644444566777777777766677777666777777777665554443
No 124
>PLN00197 beta-amylase; Provisional
Probab=27.17 E-value=1.2e+02 Score=30.91 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCcEEEE--ecCcc--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccC-c--cCCHHH
Q 025874 94 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-V--KLPVLV 157 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv--~~~~~--------~---~~~~~~lA~~~gLl~TGGSDfHG~~~~~~~~lG~-~--~ip~~~ 157 (247)
..-+..|+.+|+|||+| |.+-- + -..+.+++++.||-+-.==-||.-+. .+|. + ++|.-+
T Consensus 130 ~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGG----NVGD~~~IpLP~WV 205 (573)
T PLN00197 130 KASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGG----NVGDSCTIPLPKWV 205 (573)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCCcccccCCHHH
Confidence 45678899999999975 55421 1 25677899999987655556997542 3553 2 345544
Q ss_pred HHHHhccccccchhHHHHHHhhhhcCCCCCCccchhh-ccccccCCCCCcCCCchhhhh
Q 025874 158 LNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITR-YGRGKMLKRNYPLNCGKGLVD 215 (247)
Q Consensus 158 l~~i~~~~~piw~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 215 (247)
++...+.- -|+ |..+--..|-+-|.= ....+.++|-+|+-|=.|++.
T Consensus 206 ~~~g~~dp-Dif----------ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~ 253 (573)
T PLN00197 206 VEEVDKDP-DLA----------YTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMR 253 (573)
T ss_pred HHhhccCC-Cce----------eecCCCCcccceeccccccccccCCCCHHHHHHHHHH
Confidence 33222210 011 222222223222221 114467788888877777764
No 125
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=27.09 E-value=4e+02 Score=22.78 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=60.7
Q ss_pred HHhhCCCC-CCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCC--HHHHHHHHhhCCCCce-eCCCCCCHHHHHHHHHHcC
Q 025874 4 KLNKLKLP-LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVEN--LKQAFARYLYDGGPAY-STGSEPLAEVAVQLIHRTG 79 (247)
Q Consensus 4 kL~~~G~~-I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~~--~~eaF~~yL~~g~pay-v~~~~~~~~EaI~~Ih~aG 79 (247)
-+++.|++ ++.+++....+.+ .+..+.+.+-....... ..+.|+..+....... .....+.+.|+++.++.+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~ig~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~e~L~~L~~~g 105 (220)
T COG0546 29 ALAELGLPPLDEEEIRQLIGLG---LDELIERLLGEADEEAAAELVERLREEFLTAYAELLESRLFPGVKELLAALKSAG 105 (220)
T ss_pred HHHHcCCCCCCHHHHHHHhcCC---HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhhccCccCCCHHHHHHHHHhCC
Confidence 45778999 8999998776432 34444444433222221 1122222221111111 1245789999999999999
Q ss_pred Ce-EEecCCcCCCChHHHHHHHH-HcC----CcEEEEecC----cccHHHHHHHHHHcCCc
Q 025874 80 GL-AVLAHPWALKNPAAIIRKLK-DVG----LHGLEVYRS----DGKLVAYTDLADTYGLL 130 (247)
Q Consensus 80 Gv-aVLAHP~~~~~~~~li~~l~-~~G----lDGIEv~~~----~~~~~~~~~lA~~~gLl 130 (247)
-. +|+-+ + ....+..+. ..| ++.+..... .-+...+..+++++++-
T Consensus 106 ~~l~i~T~----k-~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~ 161 (220)
T COG0546 106 YKLGIVTN----K-PERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLD 161 (220)
T ss_pred CeEEEEeC----C-cHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCC
Confidence 33 33332 1 122223333 245 444444111 11457777777777765
No 126
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.96 E-value=3.4e+02 Score=21.95 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=37.2
Q ss_pred HHHHHHH-HcCC--eEEecCCcCCC------ChHHHHHHHHHcCCcEEEEecCcc---c------HHHHHHHHHH--cCC
Q 025874 70 VAVQLIH-RTGG--LAVLAHPWALK------NPAAIIRKLKDVGLHGLEVYRSDG---K------LVAYTDLADT--YGL 129 (247)
Q Consensus 70 EaI~~Ih-~aGG--vaVLAHP~~~~------~~~~li~~l~~~GlDGIEv~~~~~---~------~~~~~~lA~~--~gL 129 (247)
+.++.+. ..+| ++|+++=+... ...+..++..+.|.|++.+..+.. + .+.+.++++. .++
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGL 114 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCc
Confidence 5666553 3344 77777644321 123556777789999999864431 1 3566677776 466
Q ss_pred cee
Q 025874 130 LKL 132 (247)
Q Consensus 130 l~T 132 (247)
++.
T Consensus 115 pv~ 117 (201)
T cd00945 115 PLK 117 (201)
T ss_pred eEE
Confidence 554
No 127
>PRK01060 endonuclease IV; Provisional
Probab=26.88 E-value=1.2e+02 Score=26.68 Aligned_cols=38 Identities=11% Similarity=0.407 Sum_probs=29.0
Q ss_pred hHHHHHHHHHcCCcEEEEecC--c-----c----cHHHHHHHHHHcCCc
Q 025874 93 PAAIIRKLKDVGLHGLEVYRS--D-----G----KLVAYTDLADTYGLL 130 (247)
Q Consensus 93 ~~~li~~l~~~GlDGIEv~~~--~-----~----~~~~~~~lA~~~gLl 130 (247)
.++.++.+.+.|+||||.+-. . . ....+.++++++||-
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 567888888999999999732 1 1 246678889999986
No 128
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=26.70 E-value=4.8e+02 Score=23.54 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHH----Hc-CCeEEecCCcCCC--ChHHHHHHHHHcCCcEEEEecCcc----c---HHHHHHHHHHc-CC
Q 025874 65 EPLAEVAVQLIH----RT-GGLAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG----K---LVAYTDLADTY-GL 129 (247)
Q Consensus 65 ~~~~~EaI~~Ih----~a-GGvaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~----~---~~~~~~lA~~~-gL 129 (247)
.++.+|=.++++ .+ |.+.|+|+-+... ...++.+...+.|.||+=+..|.. + .+++.++|+.- ++
T Consensus 50 ~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~l 129 (288)
T cd00954 50 LLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASL 129 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 466665444332 33 4578999876432 123456667789999999877643 1 36788899877 67
Q ss_pred ceeecCCCCCCCCCCCccccCccCCHHHHHHHhc
Q 025874 130 LKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 163 (247)
Q Consensus 130 l~TGGSDfHG~~~~~~~~lG~~~ip~~~l~~i~~ 163 (247)
.+.- |+-|. ...+.++.+.+.+|.+
T Consensus 130 pi~i---Yn~P~------~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 130 PMII---YHIPA------LTGVNLTLEQFLELFE 154 (288)
T ss_pred CEEE---EeCcc------ccCCCCCHHHHHHHhc
Confidence 6644 55442 2234567777777764
No 129
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.61 E-value=3.2e+02 Score=24.14 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=46.9
Q ss_pred HHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcCCeEEec----CCcCCCChHHHHHHHHHcCCcEEEEecC----cccH
Q 025874 46 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLA----HPWALKNPAAIIRKLKDVGLHGLEVYRS----DGKL 117 (247)
Q Consensus 46 ~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aGGvaVLA----HP~~~~~~~~li~~l~~~GlDGIEv~~~----~~~~ 117 (247)
+++..+-+..|- -+.++.+++.=.++++- -|+ ..++...++.+.++|.|||=+.-- ..+.
T Consensus 51 ~~~~~~a~~~g~-----------~~~v~~vr~~~~~Pl~lM~y~n~~-~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~ 118 (244)
T PRK13125 51 RKSHRKVKGLDI-----------WPLLEEVRKDVSVPIILMTYLEDY-VDSLDNFLNMARDVGADGVLFPDLLIDYPDDL 118 (244)
T ss_pred HHHHHHHHHcCc-----------HHHHHHHhccCCCCEEEEEecchh-hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHH
Confidence 455555565543 35667776543444422 232 234567889999999999987631 2356
Q ss_pred HHHHHHHHHcCCce
Q 025874 118 VAYTDLADTYGLLK 131 (247)
Q Consensus 118 ~~~~~lA~~~gLl~ 131 (247)
..+.+.++++|+-.
T Consensus 119 ~~~~~~~~~~Gl~~ 132 (244)
T PRK13125 119 EKYVEIIKNKGLKP 132 (244)
T ss_pred HHHHHHHHHcCCCE
Confidence 78889999998743
No 130
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=26.60 E-value=4.8e+02 Score=23.68 Aligned_cols=100 Identities=20% Similarity=0.217 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhh-CCCCceeCCCCCCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcE
Q 025874 29 RLHVARAMVEAGHVENLKQAFARYLY-DGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHG 107 (247)
Q Consensus 29 RpHIA~aLv~~G~v~~~~eaF~~yL~-~g~payv~~~~~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDG 107 (247)
+..|++.|.+.|+- . -|+ + .-.|.++|. .-+.+++++.+....++-+.+.- .+ ..-++...+.|+|.
T Consensus 22 K~~i~~~L~~~Gv~-~-IEv-----Gs~~~~~~~p~-~~d~~~~~~~l~~~~~~~~~~~~---~~-~~dv~~A~~~g~~~ 89 (274)
T cd07938 22 KIELIDALSAAGLR-R-IEV-----TSFVSPKWVPQ-MADAEEVLAGLPRRPGVRYSALV---PN-LRGAERALAAGVDE 89 (274)
T ss_pred HHHHHHHHHHcCCC-E-EEe-----CCCCCcccccc-cCCHHHHHhhcccCCCCEEEEEC---CC-HHHHHHHHHcCcCE
Confidence 34688899998852 1 121 1 123444553 23566777777665565444442 12 24567778899999
Q ss_pred EEEecCccc-----------------HHHHHHHHHHcCCce------eecCCCCCC
Q 025874 108 LEVYRSDGK-----------------LVAYTDLADTYGLLK------LGGSDYHGR 140 (247)
Q Consensus 108 IEv~~~~~~-----------------~~~~~~lA~~~gLl~------TGGSDfHG~ 140 (247)
|-++-+..+ .....++|+++|+.+ +-|.-++++
T Consensus 90 i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~ 145 (274)
T cd07938 90 VAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGE 145 (274)
T ss_pred EEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCC
Confidence 988865321 134568999999887 445555554
No 131
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.09 E-value=2.1e+02 Score=25.59 Aligned_cols=57 Identities=28% Similarity=0.304 Sum_probs=34.1
Q ss_pred HHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcE----EEEecCc--------c---cHHHHHHHHHHcCCce
Q 025874 71 AVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHG----LEVYRSD--------G---KLVAYTDLADTYGLLK 131 (247)
Q Consensus 71 aI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDG----IEv~~~~--------~---~~~~~~~lA~~~gLl~ 131 (247)
..+.+++. |+.+.++++.. .++.++.|+++|++. +| .++. + +.....+.+++.|+.+
T Consensus 103 i~~~~~~~-~i~~~~~~g~~--~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v 174 (296)
T TIGR00433 103 MVQIVEEM-GLKTCATLGLL--DPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGLKV 174 (296)
T ss_pred HHHHHHhC-CCeEEecCCCC--CHHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEE
Confidence 33334444 57777777532 257788888899887 56 3321 1 1234566777888754
No 132
>PLN02161 beta-amylase
Probab=26.06 E-value=1.3e+02 Score=30.53 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCcEEEE--ecCcc--------c---HHHHHHHHHHcCCceeecCCCCCCC
Q 025874 94 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRG 141 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv--~~~~~--------~---~~~~~~lA~~~gLl~TGGSDfHG~~ 141 (247)
..-++.|+.+|+|||+| |.+-- + -+.+.+++++.||-.-.==-||.-+
T Consensus 120 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCG 180 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFHSNM 180 (531)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 45678899999999965 55421 1 2567788999998665555699753
No 133
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.93 E-value=1.9e+02 Score=28.05 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHcCCeEEecCCcC-CCChHHHHHHHHHcCCcEEEEecCc
Q 025874 63 GSEPLAEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVYRSD 114 (247)
Q Consensus 63 ~~~~~~~EaI~~Ih~aGGvaVLAHP~~-~~~~~~li~~l~~~GlDGIEv~~~~ 114 (247)
.-+|.+.+.|+..++.-|+.+.+--.. +-...+++++|.++|+|=|-+--.+
T Consensus 172 ~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~a 224 (414)
T COG2100 172 LLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDA 224 (414)
T ss_pred ccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeeccc
Confidence 356889999999999999988874321 1124689999999999998775433
No 134
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=25.85 E-value=1.3e+02 Score=28.80 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEe-------cCc----c---cHHHHHHHHHHcCCce
Q 025874 66 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVY-------RSD----G---KLVAYTDLADTYGLLK 131 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~-------~~~----~---~~~~~~~lA~~~gLl~ 131 (247)
..+.++|+.|++.-|+.+.+-.+.. ..+...+|+++|+|..... |+. + ++-...+.+++.|+-+
T Consensus 118 ~~i~~~v~~Vk~~~~le~c~slG~l--~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~v 195 (335)
T COG0502 118 EEVVEAIKAVKEELGLEVCASLGML--TEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEV 195 (335)
T ss_pred HHHHHHHHHHHHhcCcHHhhccCCC--CHHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCcc
Confidence 4455666677755667777766632 2477888999999886542 111 1 3456678899999876
Q ss_pred eec
Q 025874 132 LGG 134 (247)
Q Consensus 132 TGG 134 (247)
.+|
T Consensus 196 csG 198 (335)
T COG0502 196 CSG 198 (335)
T ss_pred ccc
Confidence 555
No 135
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.75 E-value=2.4e+02 Score=22.92 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=7.9
Q ss_pred HHcCCcEEEEecC
Q 025874 101 KDVGLHGLEVYRS 113 (247)
Q Consensus 101 ~~~GlDGIEv~~~ 113 (247)
...|+|+|-...+
T Consensus 139 ~~~g~~~iK~~~~ 151 (201)
T cd00945 139 AEAGADFIKTSTG 151 (201)
T ss_pred HHhCCCEEEeCCC
Confidence 3467777766554
No 136
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.41 E-value=1.6e+02 Score=26.15 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCeEEecC-CcCCCChHHHHHHHHHcCCcEEEEecC
Q 025874 69 EVAVQLIHRTGGLAVLAH-PWALKNPAAIIRKLKDVGLHGLEVYRS 113 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAH-P~~~~~~~~li~~l~~~GlDGIEv~~~ 113 (247)
++.|+.+|++| +.|.+- |....+..+.+..+.+.|+|||-.-+|
T Consensus 213 ~~~v~~~~~~G-l~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 213 EEFVKKAHENG-LKVMTYFDEPVNDNEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHHHcC-CEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCCH
Confidence 45666666664 333221 111122345566666777777665554
No 137
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=25.27 E-value=2.6e+02 Score=25.50 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-----c-----------HHHHHHHHHHcCCc
Q 025874 67 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-----K-----------LVAYTDLADTYGLL 130 (247)
Q Consensus 67 ~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-----~-----------~~~~~~lA~~~gLl 130 (247)
.+.++|+.++++|-.+.|- --.. .+.++..++.|.|.||.|.+.+ + .....++|.++||-
T Consensus 112 ~l~~~i~~L~~~gIrvSLF---iDP~-~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~ 187 (239)
T PF03740_consen 112 RLKPVIKRLKDAGIRVSLF---IDPD-PEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLG 187 (239)
T ss_dssp HHHHHHHHHHHTT-EEEEE---E-S--HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHhCCCEEEEE---eCCC-HHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 4668899999987655442 1112 3677888899999999997631 0 12335778899999
Q ss_pred eeecCCCC
Q 025874 131 KLGGSDYH 138 (247)
Q Consensus 131 ~TGGSDfH 138 (247)
+-+|-|-.
T Consensus 188 VnAGHgL~ 195 (239)
T PF03740_consen 188 VNAGHGLN 195 (239)
T ss_dssp EEEETT--
T ss_pred EecCCCCC
Confidence 99995543
No 138
>PRK15452 putative protease; Provisional
Probab=25.24 E-value=1.6e+02 Score=28.93 Aligned_cols=66 Identities=8% Similarity=-0.079 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHcCCeEEecCCcCCCC-----hHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHc--CCceeecCCC
Q 025874 67 LAEVAVQLIHRTGGLAVLAHPWALKN-----PAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTY--GLLKLGGSDY 137 (247)
Q Consensus 67 ~~~EaI~~Ih~aGGvaVLAHP~~~~~-----~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~--gLl~TGGSDf 137 (247)
.++++|+..|+.|--+.++=|-...+ ....++.+...|+|||=|-++ ....+++++ ++.+-+.+-.
T Consensus 47 dl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~-----G~l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 47 NLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDP-----GLIMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred HHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCH-----HHHHHHHHhCCCCeEEEEecc
Confidence 47789999999998888876643221 234577777899999988763 334555554 5555444443
No 139
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=25.20 E-value=1.3e+02 Score=28.15 Aligned_cols=42 Identities=10% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 114 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 114 (247)
++.|+.+|++| +.|. +|..+. ...++.+.+.|+|||-.-+|.
T Consensus 235 ~~~v~~~~~~G-~~v~--vWTVNd-~~~~~~l~~~GVDgIiTD~P~ 276 (315)
T cd08609 235 ALEIKELRKDN-VSVN--LWVVNE-PWLFSLLWCSGVSSVTTNACQ 276 (315)
T ss_pred HHHHHHHHHCC-CEEE--EECCCC-HHHHHHHHhcCCCEEEcCCHH
Confidence 56788888875 5443 455554 467788999999999877754
No 140
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=25.18 E-value=24 Score=26.04 Aligned_cols=13 Identities=38% Similarity=1.017 Sum_probs=8.8
Q ss_pred hhhhhhhhcccCh
Q 025874 212 GLVDECLSLWLTN 224 (247)
Q Consensus 212 ~~~~~~~~~~~~~ 224 (247)
++|.-|||-|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5788899999654
No 141
>PRK04051 rps4p 30S ribosomal protein S4P; Validated
Probab=25.13 E-value=80 Score=27.38 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=32.5
Q ss_pred hHHHhhCCCC---CCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Q 025874 2 ILKLNKLKLP---LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDG 56 (247)
Q Consensus 2 i~kL~~~G~~---I~~eev~~~a~~~~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g 56 (247)
+++|.+.|+- -++++|++..... +=+.-+-..|++.|++.|+.+| ..++..|
T Consensus 74 l~kL~~~Gil~~~~~L~~vl~L~v~~--~lerRLd~il~r~gla~S~~~A-r~lI~hG 128 (177)
T PRK04051 74 LGKLKRYGILKENATLDDVLSLTVED--ILERRLQTIVYRKGLARTPKQA-RQFIVHG 128 (177)
T ss_pred HHHHHHcCCCCCCCCHHHHHhccHHH--HHHhHHHHHHHHccCcCCHHHH-HHHHHcC
Confidence 5677777774 4556666543221 2233466678888999888887 5666554
No 142
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=25.08 E-value=1.7e+02 Score=27.15 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHcC-CeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcC--CceeecCC
Q 025874 65 EPLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 136 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aG-GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~g--Ll~TGGSD 136 (247)
.|...++++.|++.| ++.|+-|.+. ....++.+++.|.|++-+-+. .+...+ .+..+ ..+.|+=|
T Consensus 223 ~P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~is~d~~-~dl~~~---k~~~g~~~~i~Gni~ 290 (346)
T PRK00115 223 LPYMKRIVAELKREHPDVPVILFGKG---AGELLEAMAETGADVVGLDWT-VDLAEA---RRRVGDKKALQGNLD 290 (346)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCC---cHHHHHHHHhcCCCEEeeCCC-CCHHHH---HHHcCCCeEEEeCCC
Confidence 355678999999998 7778766553 345678888999999877653 233333 33444 56667654
No 143
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.01 E-value=5.3e+02 Score=23.48 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=15.4
Q ss_pred CCeEEecCCcCCCC--hHHHHHHHHHcCCcEEEEecC
Q 025874 79 GGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRS 113 (247)
Q Consensus 79 GGvaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~ 113 (247)
|.++|+||=+.... .-++.+...+.|.||+=+..|
T Consensus 68 g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 68 GRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred CCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 34555555432211 112333444456666655544
No 144
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.34 E-value=3.8e+02 Score=24.41 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcC-------CeEEecCCcCCCChHHHHHHHHHcCCcEEEEec-Cccc
Q 025874 45 LKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTG-------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR-SDGK 116 (247)
Q Consensus 45 ~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aG-------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~-~~~~ 116 (247)
+|+|..+-|..| .+++++.+++++.- -+..=.-|......++.+++++++|+||+=+.. |..+
T Consensus 62 Iq~a~~rAL~~g---------~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee 132 (263)
T CHL00200 62 IQEASNRALKQG---------INLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE 132 (263)
T ss_pred HHHHHHHHHHcC---------CCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHH
Q ss_pred HHHHHHHHHHcCC
Q 025874 117 LVAYTDLADTYGL 129 (247)
Q Consensus 117 ~~~~~~lA~~~gL 129 (247)
...+.+.|+++|+
T Consensus 133 ~~~~~~~~~~~gi 145 (263)
T CHL00200 133 SDYLISVCNLYNI 145 (263)
T ss_pred HHHHHHHHHHcCC
No 145
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=24.23 E-value=3.3e+02 Score=24.93 Aligned_cols=165 Identities=15% Similarity=0.244 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHhCC-CCCCCHHHHHHHHHHcC---CCCCHHHHHH---HHhh-CCCCc-eeCCCCCCHHHHHHHHHHcCC
Q 025874 10 LPLKWEHVAKIAGK-GVAPGRLHVARAMVEAG---HVENLKQAFA---RYLY-DGGPA-YSTGSEPLAEVAVQLIHRTGG 80 (247)
Q Consensus 10 ~~I~~eev~~~a~~-~~~igRpHIA~aLv~~G---~v~~~~eaF~---~yL~-~g~pa-yv~~~~~~~~EaI~~Ih~aGG 80 (247)
..++++++...+.. .....+|. ..++.+ |-.+..++.+ +.+. -|.-+ ++.. .....+.|+.+.++ |
T Consensus 56 ~~vtl~em~~h~~~V~r~~~~p~---vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEd-g~~~~~~I~al~~a-g 130 (264)
T PRK00311 56 LPVTLDDMIYHTKAVARGAPRAL---VVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEG-GEEVAETIKRLVER-G 130 (264)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCc---EEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcC-cHHHHHHHHHHHHC-C
Confidence 34778887655421 00112221 112333 5455555432 3444 34322 3322 22456778888876 6
Q ss_pred eEEecCCcCCC-------------C----hHHHHH---HHHHcCCcEEEEecCcccHHHHHHHHHHcCCcee---ecCCC
Q 025874 81 LAVLAHPWALK-------------N----PAAIIR---KLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKL---GGSDY 137 (247)
Q Consensus 81 vaVLAHP~~~~-------------~----~~~li~---~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~T---GGSDf 137 (247)
++|.+|=+... . .+++++ .+.++|.|+|.+-.... ....+++++..++.. +|.|+
T Consensus 131 IpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~--~~~~~i~~~l~iP~igiGaG~~~ 208 (264)
T PRK00311 131 IPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVPA--ELAKEITEALSIPTIGIGAGPDC 208 (264)
T ss_pred CCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH--HHHHHHHHhCCCCEEEeccCCCC
Confidence 99999955321 1 113344 44478999987766533 578888999887765 57888
Q ss_pred CCCCCCCCccccCcc-CCHHHHHHHhccccccchhHHHHHHhhhhcCCCC
Q 025874 138 HGRGGHGESELGSVK-LPVLVLNDFLKVARPIWCGAIKEILESYADEPSD 186 (247)
Q Consensus 138 HG~~~~~~~~lG~~~-ip~~~l~~i~~~~~piw~~~~k~~l~~~~~~~~~ 186 (247)
.|-----..-||-.. .++..++++.+. ...+++-+++|+++..+
T Consensus 209 dgqvlv~~D~lG~~~~~~pkf~k~~~~~-----~~~~~~a~~~y~~~V~~ 253 (264)
T PRK00311 209 DGQVLVWHDMLGLFSGFKPKFVKRYADL-----AGSIREAVKAYVAEVKS 253 (264)
T ss_pred CceeeeHHhhcCCCCCCCCCchHhHhhh-----HHHHHHHHHHHHHHHhC
Confidence 873111112356531 222333333321 23456667777776533
No 146
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=24.14 E-value=2.8e+02 Score=24.96 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHcCC--CCCHHHHHHHHhhCC-CCceeCCCCC-CHHHHHHHHHHcCCeEE--ecCCcCCCChHHHHHHH
Q 025874 27 PGRLHVARAMVEAGH--VENLKQAFARYLYDG-GPAYSTGSEP-LAEVAVQLIHRTGGLAV--LAHPWALKNPAAIIRKL 100 (247)
Q Consensus 27 igRpHIA~aLv~~G~--v~~~~eaF~~yL~~g-~payv~~~~~-~~~EaI~~Ih~aGGvaV--LAHP~~~~~~~~li~~l 100 (247)
=||. +|+.|.++|+ ++-.-+.=.+.+... ....+-...+ +.++..+++++.|=-+| ..|||...-........
T Consensus 11 E~r~-la~~L~~~g~v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~ 89 (249)
T PF02571_consen 11 EGRK-LAERLAEAGYVIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEAC 89 (249)
T ss_pred HHHH-HHHHHHhcCCEEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHH
Confidence 3555 9999999997 221111111222222 2233444567 89999999987775555 48999644333444444
Q ss_pred HHcCCcEEEEecCc------------ccHHHHHHHHHHc---CCceeecC
Q 025874 101 KDVGLHGLEVYRSD------------GKLVAYTDLADTY---GLLKLGGS 135 (247)
Q Consensus 101 ~~~GlDGIEv~~~~------------~~~~~~~~lA~~~---gLl~TGGS 135 (247)
.+.|+.=+=.-.+. .+...+.+++.+. .++.|-||
T Consensus 90 ~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~iflttGs 139 (249)
T PF02571_consen 90 RELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFLTTGS 139 (249)
T ss_pred hhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEEeCch
Confidence 45555444322221 1345555666443 45666665
No 147
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=24.08 E-value=2.5e+02 Score=23.03 Aligned_cols=74 Identities=20% Similarity=0.141 Sum_probs=40.3
Q ss_pred ChHHHhhCCCCCCHHHHHHHhCC-CCC-------------CCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCC
Q 025874 1 MILKLNKLKLPLKWEHVAKIAGK-GVA-------------PGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEP 66 (247)
Q Consensus 1 ii~kL~~~G~~I~~eev~~~a~~-~~~-------------igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~ 66 (247)
|++.|+.+|++=+..-...+..+ +.. |-=.--+++|-+.|.++-..+ .+ =|.|+|-..-+-..
T Consensus 16 ~ie~L~~lgi~R~vA~tlv~L~~~~E~sS~~IE~~sgLRQPEVSiAMr~Lre~gWV~~R~e--KK-kGKGRPik~Y~Lt~ 92 (124)
T COG4738 16 IIELLRILGIPRNVATTLVCLAKGDEASSREIERVSGLRQPEVSIAMRYLRENGWVDEREE--KK-KGKGRPIKLYRLTV 92 (124)
T ss_pred HHHHHHHcCCCchHHHHHHHHhcCcchhhhhhHHhhcCCCchhHHHHHHHHHccccchHHh--cc-cCCCCCceEEEecC
Confidence 46777788877554444333211 111 111223567778888876544 23 67777744333445
Q ss_pred CHHHHHHHHHH
Q 025874 67 LAEVAVQLIHR 77 (247)
Q Consensus 67 ~~~EaI~~Ih~ 77 (247)
++++.|+.|.+
T Consensus 93 ~~~eIvs~iee 103 (124)
T COG4738 93 PFDEIVSEIEE 103 (124)
T ss_pred cHHHHHHHHHH
Confidence 66777766543
No 148
>PRK07143 hypothetical protein; Provisional
Probab=24.00 E-value=3.5e+02 Score=24.93 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=28.2
Q ss_pred hHHHHHHHHHcCCcEEEEecCc-----ccHH-HHHHHHHHcC-CceeecCCCC-CCC
Q 025874 93 PAAIIRKLKDVGLHGLEVYRSD-----GKLV-AYTDLADTYG-LLKLGGSDYH-GRG 141 (247)
Q Consensus 93 ~~~li~~l~~~GlDGIEv~~~~-----~~~~-~~~~lA~~~g-Ll~TGGSDfH-G~~ 141 (247)
.++-++.+...|+|-+-+..=. -..+ .+..+-. .+ -.+..|.||+ |.+
T Consensus 67 ~~er~~~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~ll~-l~~~~iVvG~Df~FG~~ 122 (279)
T PRK07143 67 LNSRLQTLANLGFKNIILLDFNEELQNLSGNDFIEKLTK-NQVSFFVVGKDFRFGKN 122 (279)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCHHHhCCCHHHHHHHHHh-cCCCEEEECCCcccCCC
Confidence 3455666778899988776522 1222 3333332 33 2477899999 543
No 149
>PRK09875 putative hydrolase; Provisional
Probab=23.74 E-value=5.1e+02 Score=23.96 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHcCC---eEEecCCcCCCChHHHHHHHHHcC------CcEEEEecCcccHHHHHHHHHHcC----CceeecCC
Q 025874 70 VAVQLIHRTGG---LAVLAHPWALKNPAAIIRKLKDVG------LHGLEVYRSDGKLVAYTDLADTYG----LLKLGGSD 136 (247)
Q Consensus 70 EaI~~Ih~aGG---vaVLAHP~~~~~~~~li~~l~~~G------lDGIEv~~~~~~~~~~~~lA~~~g----Ll~TGGSD 136 (247)
|.++++.+.|. .+|+.|+....+. ..+.++++.| .=|.+.|+|..+.........++| ++. ++|
T Consensus 167 e~l~il~e~Gvd~~rvvi~H~d~~~d~-~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilL--S~D 243 (292)
T PRK09875 167 EQLALLQAHGVDLSRVTVGHCDLKDNL-DNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVML--SMD 243 (292)
T ss_pred HHHHHHHHcCcCcceEEEeCCCCCCCH-HHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEE--eCC
Q ss_pred CCCC-CCCCCccccCccCCHHHHHHHhccccccchhHHHHHHhh
Q 025874 137 YHGR-GGHGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILES 179 (247)
Q Consensus 137 fHG~-~~~~~~~lG~~~ip~~~l~~i~~~~~piw~~~~k~~l~~ 179 (247)
.... ..++-...|-..+....+..+++.--. +..++.++..
T Consensus 244 ~~~~~~~~~~gg~G~~~i~~~~ip~L~~~Gvs--e~~I~~m~~~ 285 (292)
T PRK09875 244 ITRRSHLKANGGYGYDYLLTTFIPQLRQSGFS--QADVDVMLRE 285 (292)
T ss_pred CCCcccccccCCCChhHHHHHHHHHHHHcCCC--HHHHHHHHHH
No 150
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=23.55 E-value=3.8e+02 Score=24.75 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCcEEEEecCc-----ccHH-HHHHHH-HHcC-CceeecCCCC
Q 025874 94 AAIIRKLKDVGLHGLEVYRSD-----GKLV-AYTDLA-DTYG-LLKLGGSDYH 138 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv~~~~-----~~~~-~~~~lA-~~~g-Ll~TGGSDfH 138 (247)
++-+..+...|+|-+-+..=. -+.+ ...++- ++++ --+..|.||+
T Consensus 57 ~~k~~~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~ 109 (288)
T TIGR00083 57 EDKARQLQIKGVEQLLVVVFDEEFANLSALQFIDQLIVKHLHVKFLVVGDDFR 109 (288)
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHHHHHHHHhccCCcEEEECCCcc
Confidence 455666778899988877632 1333 334444 3355 3567899998
No 151
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=23.34 E-value=35 Score=32.58 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHhh-CCCCceeCCCCCCHHHHHHHH--HHcCCeEEecCCcCCCChHHHHHHHHHcC
Q 025874 28 GRLHVARAMVEAGHVENLKQAFARYLY-DGGPAYSTGSEPLAEVAVQLI--HRTGGLAVLAHPWALKNPAAIIRKLKDVG 104 (247)
Q Consensus 28 gRpHIA~aLv~~G~v~~~~eaF~~yL~-~g~payv~~~~~~~~EaI~~I--h~aGGvaVLAHP~~~~~~~~li~~l~~~G 104 (247)
.|.--|++++-.|..+...+ +..-+. ...+-++.+...+. +... ++...++-+|||.+ ....|.++|
T Consensus 187 ~rl~~ad~ii~~g~~~~~~~-~~~~l~~~~~~~l~~~~~~~~---~~~~~~~~v~afaGIg~P~r------Ff~tL~~~g 256 (336)
T COG1663 187 KRLKSADAIITNGGGSRADP-IPMRLAPGHAPNLVAPGERSD---VADLKGKRVVAFAGIGNPQR------FFATLRNLG 256 (336)
T ss_pred hhhhcCcEEEecCCCccccc-hhhhhcccccceeeccceecc---hhhcCCceEEEEEecCChHH------HHHHHHHcC
Confidence 34444555555666554333 222232 23333443222211 1111 23567788888864 445677789
Q ss_pred CcEEEEec-Ccc---cH---HHHHHHHHHcCCcee
Q 025874 105 LHGLEVYR-SDG---KL---VAYTDLADTYGLLKL 132 (247)
Q Consensus 105 lDGIEv~~-~~~---~~---~~~~~lA~~~gLl~T 132 (247)
++-++.+. ++| .. +.+.+.++..+|++|
T Consensus 257 ~~~~~~~~FpDH~~f~~~~l~~l~~~~~~~~Ll~T 291 (336)
T COG1663 257 IQVVETLAFPDHYDFSAADLEDLAKKAQADGLLTT 291 (336)
T ss_pred cceeeeecCCchhhccHHHHHHHHhhhccceEEee
Confidence 99998875 454 22 344444444456665
No 152
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=23.09 E-value=1.6e+02 Score=26.59 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcC--CceeecCCCC
Q 025874 65 EPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSDYH 138 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~g--Ll~TGGSDfH 138 (247)
.+...++++.||+.|+ .+.-|-+. +....++.+.+.|+|.+-+-+.. +.. ++.+.+| ..+.||=|-+
T Consensus 207 ~p~~k~i~~~i~~~g~-~~~lH~cG--~~~~~~~~l~~~~~d~~~~d~~~-dl~---~~~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 207 LPYLKKVFDAIKALGG-PVIHHNCG--DTAPILELMADLGADVFSIDVTV-DLA---EAKKKVGDKACLMGNLDPI 275 (330)
T ss_pred hHHHHHHHHHHHHcCC-ceEEEECC--CchhHHHHHHHhCCCeEeecccC-CHH---HHHHHhCCceEEEeCcChH
Confidence 4555789999999854 55558874 33367888999999876653322 333 4444554 6777887766
No 153
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=23.01 E-value=5.7e+02 Score=23.17 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHH----H-cCCeEEecCCcCCCChH---HHHHHHHHcCCcEEEEecCcc----c---HHHHHHHHHHcCC
Q 025874 65 EPLAEVAVQLIH----R-TGGLAVLAHPWALKNPA---AIIRKLKDVGLHGLEVYRSDG----K---LVAYTDLADTYGL 129 (247)
Q Consensus 65 ~~~~~EaI~~Ih----~-aGGvaVLAHP~~~~~~~---~li~~l~~~GlDGIEv~~~~~----~---~~~~~~lA~~~gL 129 (247)
.+|.+|=.++++ . .|-++|++|-+. ... ++.+...+.|.|++-+..|.. + .+++.++|+.-++
T Consensus 54 ~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~ 131 (296)
T TIGR03249 54 SLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDL 131 (296)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCC
Confidence 466666544443 2 345888888653 233 345555678999998877653 1 3577778877665
Q ss_pred ceeecCCCCCCCCCCCccccCccCCHHHHHHHhc
Q 025874 130 LKLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 163 (247)
Q Consensus 130 l~TGGSDfHG~~~~~~~~lG~~~ip~~~l~~i~~ 163 (247)
.+.- ||.. | +.++.+.+.++.+
T Consensus 132 pvil---Yn~~--------g-~~l~~~~~~~La~ 153 (296)
T TIGR03249 132 GVIV---YQRD--------N-AVLNADTLERLAD 153 (296)
T ss_pred CEEE---EeCC--------C-CCCCHHHHHHHHh
Confidence 4332 4411 1 2456666666653
No 154
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=22.97 E-value=2.8e+02 Score=26.02 Aligned_cols=73 Identities=5% Similarity=-0.001 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCeEEe--cCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCCc------eeecCCCCC
Q 025874 68 AEVAVQLIHRTGGLAVL--AHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLL------KLGGSDYHG 139 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVL--AHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl------~TGGSDfHG 139 (247)
+++..+..+..|+..+. ..+....+...++.+++..+-+-|=+..+......+.+.|++.|+. +.++.|+|.
T Consensus 140 lq~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~ 219 (371)
T cd06388 140 LQAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKD 219 (371)
T ss_pred HHHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEccCcccc
Confidence 55666766777766554 3333222345678888888888886666666777888999999884 456667777
Q ss_pred C
Q 025874 140 R 140 (247)
Q Consensus 140 ~ 140 (247)
.
T Consensus 220 ~ 220 (371)
T cd06388 220 I 220 (371)
T ss_pred c
Confidence 5
No 155
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.51 E-value=2.5e+02 Score=25.89 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=31.7
Q ss_pred HHcCC-eEEecCCcCCCC--hHHHHHHHHHcCCcEEEEecCcc-------cHHHHHHHHHHcCC
Q 025874 76 HRTGG-LAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLADTYGL 129 (247)
Q Consensus 76 h~aGG-vaVLAHP~~~~~--~~~li~~l~~~GlDGIEv~~~~~-------~~~~~~~lA~~~gL 129 (247)
..++| ++|+|+-+.... ..++.+...+.|.|||=+..|++ ..+.+..+|+.-+|
T Consensus 68 ~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~l 131 (299)
T COG0329 68 EAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDL 131 (299)
T ss_pred HHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCC
Confidence 34455 668887665331 12344555567888887776653 13566677766555
No 156
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=22.43 E-value=1.6e+02 Score=25.14 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecC
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 113 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 113 (247)
++.|+.+|++ |+.|.+. ..++ ...+..+.+.|+|||..-+|
T Consensus 180 ~~~v~~~~~~-G~~v~~w--tvn~-~~~~~~~~~~Gvd~i~TD~P 220 (220)
T cd08579 180 KEFIRQAHQN-GKKVYVW--TVND-PDDMQRYLAMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHHHC-CCEEEEE--cCCC-HHHHHHHHHcCCCEEeCCCC
Confidence 4678999986 4767664 3333 45678888999999876543
No 157
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.43 E-value=4.7e+02 Score=23.55 Aligned_cols=60 Identities=13% Similarity=-0.023 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCeEEe--cCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcCC
Q 025874 70 VAVQLIHRTGGLAVL--AHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGL 129 (247)
Q Consensus 70 EaI~~Ih~aGGvaVL--AHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gL 129 (247)
...+.+.+.|+-.|. .+|....+....+.+++..+.|.|=+.....+...+.+.+++.|+
T Consensus 163 ~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~ 224 (362)
T cd06343 163 GLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELGW 224 (362)
T ss_pred HHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence 344556666664443 444433344567777888888888777655555666666677664
No 158
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.31 E-value=1.7e+02 Score=23.72 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEE
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 110 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 110 (247)
..+.++.+|+. |+.|.+.. .++ .+.++.+...|+|||..
T Consensus 149 ~~~~i~~~~~~-g~~v~~wt--vn~-~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 149 TPELVRAAHAA-GLKVYVWT--VND-PEDARRLLALGVDGIIT 187 (189)
T ss_pred CHHHHHHHHHc-CCEEEEEc--CCC-HHHHHHHHHCCCCEEec
Confidence 35678888884 67777643 333 45677788889998754
No 159
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=22.07 E-value=96 Score=30.35 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=39.7
Q ss_pred HhhCCCCCCHHHHHHHh--CCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcCCeE
Q 025874 5 LNKLKLPLKWEHVAKIA--GKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLA 82 (247)
Q Consensus 5 L~~~G~~I~~eev~~~a--~~~~~igRpHIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aGGva 82 (247)
|.-.-|.+.-|.-.++. ..+ -.+||.+.++||+.|..+-. -.||.- .+-.++. +. -++++-|-..|-.-
T Consensus 378 ls~ae~k~kKEACWAisNatsg-g~~~PD~iryLv~qG~IkpL----c~~L~~-~dNkiie--v~-LD~~eniLk~Ge~d 448 (526)
T COG5064 378 LSSAEYKIKKEACWAISNATSG-GLNRPDIIRYLVSQGFIKPL----CDLLDV-VDNKIIE--VA-LDAIENILKVGEQD 448 (526)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc-ccCCchHHHHHHHccchhHH----HHHHhc-cCccchh--hh-HHHHHHHHhhhhHH
Confidence 33334555555554442 223 36899999999999997643 344421 1111221 12 35777777766544
Q ss_pred EecC
Q 025874 83 VLAH 86 (247)
Q Consensus 83 VLAH 86 (247)
-++-
T Consensus 449 ~~~~ 452 (526)
T COG5064 449 RLRY 452 (526)
T ss_pred HHhc
Confidence 4443
No 160
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=21.96 E-value=7.1e+02 Score=23.83 Aligned_cols=166 Identities=17% Similarity=0.213 Sum_probs=91.2
Q ss_pred CCCCCHHHHHHHhCC-CCCCCHHHHHHHHH-H--cC-CCCCHHHHHH---HHhhCCCCceeCCCCC--CHHHHHHHHHHc
Q 025874 9 KLPLKWEHVAKIAGK-GVAPGRLHVARAMV-E--AG-HVENLKQAFA---RYLYDGGPAYSTGSEP--LAEVAVQLIHRT 78 (247)
Q Consensus 9 G~~I~~eev~~~a~~-~~~igRpHIA~aLv-~--~G-~v~~~~eaF~---~yL~~g~payv~~~~~--~~~EaI~~Ih~a 78 (247)
+.++++|++...+.. .....++ .+| + -| |..+.+++++ +++...+-.=|.-+.- ...++|+.+. .
T Consensus 75 T~~Vtld~mi~H~~aV~Rga~~a----~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~-~ 149 (332)
T PLN02424 75 TLPITLDEMLVHCRAVARGANRP----LLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIV-E 149 (332)
T ss_pred CCCcCHHHHHHHHHHHhccCCCC----EEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHH-H
Confidence 456888888655410 0012233 222 3 34 6677777754 4555444333433332 3457888888 5
Q ss_pred CCeEEecCCcCCC-------------Ch----HHHHH---HHHHcCCcEEEEecCcccHHHHHHHHHHcCCcee---ecC
Q 025874 79 GGLAVLAHPWALK-------------NP----AAIIR---KLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKL---GGS 135 (247)
Q Consensus 79 GGvaVLAHP~~~~-------------~~----~~li~---~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~T---GGS 135 (247)
-||+|.+|=+... .. ..+++ .+.++|.++|.+-.-... ...++.++..++.. +|.
T Consensus 150 ~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~--la~~It~~l~IPtIGIGAG~ 227 (332)
T PLN02424 150 AGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVPAP--VAAAITSALQIPTIGIGAGP 227 (332)
T ss_pred cCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHH--HHHHHHHhCCCCEEeecCCC
Confidence 6799999965321 01 12333 444789999866543332 77788899988776 578
Q ss_pred CCCCCCCCCCccccCcc------CCHHHHHHHhccccccchhHHHHHHhhhhcCCCC
Q 025874 136 DYHGRGGHGESELGSVK------LPVLVLNDFLKVARPIWCGAIKEILESYADEPSD 186 (247)
Q Consensus 136 DfHG~~~~~~~~lG~~~------ip~~~l~~i~~~~~piw~~~~k~~l~~~~~~~~~ 186 (247)
++.|-----..-||-+. .....++++.+ ....+++-++.|+++..+
T Consensus 228 ~cDGQVLV~~D~LG~~~~p~h~~~~PkFvk~y~~-----~~~~~~~A~~~y~~eVk~ 279 (332)
T PLN02424 228 FCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQYAK-----VGEVINKALAEYKEEVEN 279 (332)
T ss_pred CCCceeEeHHhhcCCCCCccccCCCCchHHHHHh-----HHHHHHHHHHHHHHHHhC
Confidence 88873111112355442 12223333332 234667777888877643
No 161
>PF14229 DUF4332: Domain of unknown function (DUF4332)
Probab=21.95 E-value=1.3e+02 Score=24.10 Aligned_cols=51 Identities=14% Similarity=-0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCC-------CHHHHHHHHhhCCCCceeCCCC-CCHHHHHHHHHHcC
Q 025874 29 RLHVARAMVEAGHVE-------NLKQAFARYLYDGGPAYSTGSE-PLAEVAVQLIHRTG 79 (247)
Q Consensus 29 RpHIA~aLv~~G~v~-------~~~eaF~~yL~~g~payv~~~~-~~~~EaI~~Ih~aG 79 (247)
+++.|..|+..|+.+ +.++.+.+...-.......+.- |+.+++-++|..|.
T Consensus 62 ~~~~a~LL~~AGv~Tv~~LA~~~p~~L~~~l~~~n~~~~~~r~~~p~~~~v~~WI~~Ak 120 (122)
T PF14229_consen 62 GPQYAELLEHAGVDTVEELAQRNPQNLHQKLGRLNRKLKLRRQLCPSLEEVQEWIEQAK 120 (122)
T ss_pred CHHHHHHHHHhCcCcHHHHHhCCHHHHHHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHH
Confidence 467899999999853 2334444443322222222233 78999999998763
No 162
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=21.91 E-value=1.5e+02 Score=27.39 Aligned_cols=60 Identities=20% Similarity=0.375 Sum_probs=39.9
Q ss_pred HHHHHHHHHcC---CeEEecCCcCCCChHHHHHHHHHcCCc-----EEEEecCc---------c---cHHHHHHHHHHcC
Q 025874 69 EVAVQLIHRTG---GLAVLAHPWALKNPAAIIRKLKDVGLH-----GLEVYRSD---------G---KLVAYTDLADTYG 128 (247)
Q Consensus 69 ~EaI~~Ih~aG---GvaVLAHP~~~~~~~~li~~l~~~GlD-----GIEv~~~~---------~---~~~~~~~lA~~~g 128 (247)
.+..+.|+..+ .+.+-++|.... ++.++.++++|+. |+|..+.. + +...+.+.++++|
T Consensus 91 ~~i~~~l~~~~~~~~i~~esrpd~i~--~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~G 168 (313)
T TIGR01210 91 NYIFEKIAQRDNLKEVVVESRPEFID--EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYG 168 (313)
T ss_pred HHHHHHHHhcCCcceEEEEeCCCcCC--HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcC
Confidence 45666777665 478888986443 5778889999986 44444432 1 2346677888888
Q ss_pred Cc
Q 025874 129 LL 130 (247)
Q Consensus 129 Ll 130 (247)
+-
T Consensus 169 i~ 170 (313)
T TIGR01210 169 AG 170 (313)
T ss_pred Cc
Confidence 75
No 163
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.85 E-value=2e+02 Score=25.12 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecC
Q 025874 70 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 113 (247)
Q Consensus 70 EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~ 113 (247)
+.|+.+|++| +.|.+. ..+. ...+..+.+.|+|||..-+|
T Consensus 222 ~~i~~~~~~G-~~v~vw--tvn~-~~~~~~~~~~Gvdgi~TD~P 261 (263)
T cd08567 222 ELVDEAHALG-LKVVPW--TVND-PEDMARLIDLGVDGIITDYP 261 (263)
T ss_pred HHHHHHHHCC-CEEEEe--cCCC-HHHHHHHHHcCCCEEEcCCC
Confidence 4555555554 334332 2222 24455666677777665554
No 164
>PF14162 YozD: YozD-like protein
Probab=21.84 E-value=1.1e+02 Score=21.68 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=14.7
Q ss_pred HHHHHHHcCCCCCHHHHH
Q 025874 32 VARAMVEAGHVENLKQAF 49 (247)
Q Consensus 32 IA~aLv~~G~v~~~~eaF 49 (247)
+.+.|+++||+++..+.|
T Consensus 17 Fy~eL~kRGyvP~e~El~ 34 (57)
T PF14162_consen 17 FYHELVKRGYVPTEEELE 34 (57)
T ss_pred HHHHHHHccCCCcHHHHH
Confidence 667899999999987654
No 165
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=21.80 E-value=3.9e+02 Score=24.31 Aligned_cols=163 Identities=14% Similarity=0.211 Sum_probs=89.2
Q ss_pred CCCHHHHHHHhCC-CCCCCHHHHHHHHHHcC---CCCCHHHHHHH---Hhh-CCCCc-eeCCCCCCHHHHHHHHHHcCCe
Q 025874 11 PLKWEHVAKIAGK-GVAPGRLHVARAMVEAG---HVENLKQAFAR---YLY-DGGPA-YSTGSEPLAEVAVQLIHRTGGL 81 (247)
Q Consensus 11 ~I~~eev~~~a~~-~~~igRpHIA~aLv~~G---~v~~~~eaF~~---yL~-~g~pa-yv~~~~~~~~EaI~~Ih~aGGv 81 (247)
.++++++...+.. ......|.+ .++.+ |..+..++.++ .+. -|.-+ ++.. .....+.|+.+.++| +
T Consensus 54 ~vtl~em~~~~~~V~r~~~~p~v---iaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd-~~~~~~~I~al~~ag-i 128 (254)
T cd06557 54 PVTLDEMIYHTRAVRRGAPRALV---VADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEG-GAEVAETIRALVDAG-I 128 (254)
T ss_pred CcCHHHHHHHHHHHHhcCCCCeE---EEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcC-cHHHHHHHHHHHHcC-C
Confidence 5788887655421 011233311 12333 55666666443 444 33322 3322 124567788888766 9
Q ss_pred EEecCCcCCC-------------Ch----HHHHH---HHHHcCCcEEEEecCcccHHHHHHHHHHcCCcee---ecCCCC
Q 025874 82 AVLAHPWALK-------------NP----AAIIR---KLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKL---GGSDYH 138 (247)
Q Consensus 82 aVLAHP~~~~-------------~~----~~li~---~l~~~GlDGIEv~~~~~~~~~~~~lA~~~gLl~T---GGSDfH 138 (247)
+|.+|=+... .. +++++ .+.++|.|+|.+-... ...+.+++++..++.. +|+++.
T Consensus 129 pV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~--~~~~~~i~~~v~iP~igiGaG~~~d 206 (254)
T cd06557 129 PVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP--AELAKEITEALSIPTIGIGAGPDCD 206 (254)
T ss_pred CeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC--HHHHHHHHHhCCCCEEEeccCCCCC
Confidence 9999854221 11 23333 4457899999776653 3588899999998877 688888
Q ss_pred CCCCCCCccccCcc-CCHHHHHHHhccccccchhHHHHHHhhhhcCCC
Q 025874 139 GRGGHGESELGSVK-LPVLVLNDFLKVARPIWCGAIKEILESYADEPS 185 (247)
Q Consensus 139 G~~~~~~~~lG~~~-ip~~~l~~i~~~~~piw~~~~k~~l~~~~~~~~ 185 (247)
|-----..-+|-.. .++..++.+.+. ...+++-+++|+++..
T Consensus 207 gqvlv~~D~lG~~~~~~p~f~k~~~~~-----~~~~~~a~~~y~~~v~ 249 (254)
T cd06557 207 GQVLVWHDMLGLSPGFKPKFVKRYADL-----GELIREAVKAYVEEVK 249 (254)
T ss_pred ceeehHHhhcCCCCCCCCCcHHHHhhh-----HHHHHHHHHHHHHHHh
Confidence 83111112356542 233333444331 2346666777776653
No 166
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=21.63 E-value=2.4e+02 Score=25.88 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEec
Q 025874 66 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR 112 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~ 112 (247)
+...++++.|++.|+..++ |-+. +...+++.+.+.|.|++-+-+
T Consensus 220 p~~k~i~~~i~~~g~~~il-H~CG--~~~~~~~~l~~~g~d~ls~d~ 263 (340)
T TIGR01463 220 PYQKRLFAYIKEIGGITVL-HICG--FTQPILRDIANNGCFGFSVDM 263 (340)
T ss_pred HHHHHHHHHHHhcCCceEE-EECC--CchhhHHHHHHhCCCEEeecC
Confidence 4456788899988887776 6443 234577888889999876444
No 167
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.55 E-value=5.5e+02 Score=23.19 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCeEEecCCc-CCCChHHHHHHHHHcCCcEEEEecC
Q 025874 68 AEVAVQLIHRTGGLAVLAHPW-ALKNPAAIIRKLKDVGLHGLEVYRS 113 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~-~~~~~~~li~~l~~~GlDGIEv~~~ 113 (247)
+.|+++.|+++-.++|...=. ...+..++.+.+.+.|+|||.+.|.
T Consensus 145 ~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt 191 (301)
T PRK07259 145 AYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINT 191 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcc
Confidence 567888888876677766411 1112335667777899999988763
No 168
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.55 E-value=2.6e+02 Score=18.63 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcC
Q 025874 32 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTG 79 (247)
Q Consensus 32 IA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aG 79 (247)
|.-...++|++++..+++++....| . +++.+..-.+++.+|
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g--~-----~is~~l~~~~L~~~g 48 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAG--F-----RISPKLIEEILRRAG 48 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcC--c-----ccCHHHHHHHHHHcC
Confidence 5566678999998888888885554 2 345454444444443
No 169
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=21.43 E-value=2.9e+02 Score=23.97 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCcEEEEec
Q 025874 95 AIIRKLKDVGLHGLEVYR 112 (247)
Q Consensus 95 ~li~~l~~~GlDGIEv~~ 112 (247)
..+..+.+.|+|||..-+
T Consensus 217 ~~~~~l~~~GVdgiiTD~ 234 (237)
T cd08583 217 KDAQEYKKLGVYGIYTDF 234 (237)
T ss_pred HHHHHHHHcCCCEEEeCC
Confidence 455666677777766543
No 170
>PLN02522 ATP citrate (pro-S)-lyase
Probab=21.43 E-value=1.6e+02 Score=30.46 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=50.6
Q ss_pred eCCCCCCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc---ccHHHHHHHHHHcCCceee
Q 025874 61 STGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 61 v~~~~~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~---~~~~~~~~lA~~~gLl~TG 133 (247)
+|. +-+++||++.-..+.-..+.+.|..- .+..++++.+.|+..+=++... .+...+.++|+++|+.+.|
T Consensus 63 iPV-f~tv~eA~~~~~~~~~~vifvp~~~a--~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~rlIG 135 (608)
T PLN02522 63 IPV-HGSIEAACKAHPTADVFINFASFRSA--AASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKVVIG 135 (608)
T ss_pred ccc-cchHHHHHHhCCCCcEEEEeCChHHh--HHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCEEEC
Confidence 444 56889998864366666667766322 3578888877899999998754 3678899999999976543
No 171
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=21.42 E-value=4.7e+02 Score=22.57 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHcCCeEEecCCcC---CCChHHHHHHHHHcC-CcEEEEecCcccHHHHHHHHHHcCCce
Q 025874 64 SEPLAEVAVQLIHRTGGLAVLAHPWA---LKNPAAIIRKLKDVG-LHGLEVYRSDGKLVAYTDLADTYGLLK 131 (247)
Q Consensus 64 ~~~~~~EaI~~Ih~aGGvaVLAHP~~---~~~~~~li~~l~~~G-lDGIEv~~~~~~~~~~~~lA~~~gLl~ 131 (247)
.-.++.+.++.+|++|=.+++ |--. ....+.-++.++..+ .|||=--. ....+.|++.||+.
T Consensus 29 ~I~~l~~~v~~~~~~gK~vfV-HiDli~Gl~~D~~~i~~L~~~~~~dGIISTk-----~~~i~~Ak~~gl~t 94 (175)
T PF04309_consen 29 DIGNLKDIVKRLKAAGKKVFV-HIDLIEGLSRDEAGIEYLKEYGKPDGIISTK-----SNLIKRAKKLGLLT 94 (175)
T ss_dssp ECCCHHHHHHHHHHTT-EEEE-ECCGEETB-SSHHHHHHHHHTT--SEEEESS-----HHHHHHHHHTT-EE
T ss_pred cHHHHHHHHHHHHHcCCEEEE-EehhcCCCCCCHHHHHHHHHcCCCcEEEeCC-----HHHHHHHHHcCCEE
Confidence 457899999999999866555 5422 223456788888877 99974433 35677888888775
No 172
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.38 E-value=6.1e+02 Score=23.21 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhCCCCceeCCCCCCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEE
Q 025874 29 RLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 108 (247)
Q Consensus 29 RpHIA~aLv~~G~v~~~~eaF~~yL~~g~payv~~~~~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGI 108 (247)
+.-||+.|.+.|+-. -|+ ..| -.|.++|.-. +.+|+++.|....++-+.+. . .+. .-++...+.|+|.|
T Consensus 28 k~~ia~~L~~~Gv~~--IEv-gsf---~~p~~~p~~~-d~~e~~~~l~~~~~~~~~~l--~-~~~-~~ie~A~~~g~~~v 96 (287)
T PRK05692 28 KIALIDRLSAAGLSY--IEV-ASF---VSPKWVPQMA-DAAEVMAGIQRRPGVTYAAL--T-PNL-KGLEAALAAGADEV 96 (287)
T ss_pred HHHHHHHHHHcCCCE--EEe-CCC---cCcccccccc-cHHHHHHhhhccCCCeEEEE--e-cCH-HHHHHHHHcCCCEE
Confidence 345888999988632 121 011 1344555422 35788888876656544332 1 132 44567778999999
Q ss_pred EEecCcc-----------------cHHHHHHHHHHcCCcee
Q 025874 109 EVYRSDG-----------------KLVAYTDLADTYGLLKL 132 (247)
Q Consensus 109 Ev~~~~~-----------------~~~~~~~lA~~~gLl~T 132 (247)
-++-+.. ......++|+++|+.+.
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 9986531 12356789999998763
No 173
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=21.37 E-value=6e+02 Score=22.80 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=25.8
Q ss_pred eEEecCCcCCC--ChHHHHHHHHHcCCcEEEEecCcc----c---HHHHHHHHHHcCCce
Q 025874 81 LAVLAHPWALK--NPAAIIRKLKDVGLHGLEVYRSDG----K---LVAYTDLADTYGLLK 131 (247)
Q Consensus 81 vaVLAHP~~~~--~~~~li~~l~~~GlDGIEv~~~~~----~---~~~~~~lA~~~gLl~ 131 (247)
++|++|=.... ...++.+...+.|.||+=+..|.+ + .+++.++|+.-++.+
T Consensus 68 ~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi 127 (285)
T TIGR00674 68 VPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPI 127 (285)
T ss_pred CeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 66666643321 112344455566777777665532 1 245566666544443
No 174
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.29 E-value=3.1e+02 Score=24.88 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHcC--CeEEecCCcCCCC------hHHHHHHHHHcCCcEEEEec-CcccHHHHHHHHHHcCC
Q 025874 66 PLAEVAVQLIHRTG--GLAVLAHPWALKN------PAAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 129 (247)
Q Consensus 66 ~~~~EaI~~Ih~aG--GvaVLAHP~~~~~------~~~li~~l~~~GlDGIEv~~-~~~~~~~~~~lA~~~gL 129 (247)
.++..++++++.+- |+.+.---+.|.| .+..|...+.+|..|+=+.. |.++...+++.|+++|+
T Consensus 77 ~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gi 149 (268)
T KOG4175|consen 77 TTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGI 149 (268)
T ss_pred CcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCc
Confidence 35555666665542 3433211223333 35678888889999987665 56788889999999885
No 175
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.29 E-value=1.1e+02 Score=27.48 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHcCC-eEEecCCcCCCChHHHHHHH-HHcCCcEE
Q 025874 62 TGSEPLAEVAVQLIHRTGG-LAVLAHPWALKNPAAIIRKL-KDVGLHGL 108 (247)
Q Consensus 62 ~~~~~~~~EaI~~Ih~aGG-vaVLAHP~~~~~~~~li~~l-~~~GlDGI 108 (247)
+..+|++++.|+.+|+.|= +.+..||+-.....+.++.+ .+.|+||+
T Consensus 62 ~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v~~w~~~~~~~~~~~~Gvdg~ 110 (265)
T cd06589 62 AGKFPNPKSMIDELHDNGVKLVLWIDPYIREWWAEVVKKLLVSLGVDGF 110 (265)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEeChhHHHHHHHHHHHhhccCCCCEE
Confidence 4568999999999999763 35667887522222344444 67888886
No 176
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.21 E-value=2.4e+02 Score=25.16 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=36.0
Q ss_pred eEEecCCcCCC----ChHHHHHHHHHcCC--cE--EEEecCcc---cHHHHHHHHHHcCCceeecCC
Q 025874 81 LAVLAHPWALK----NPAAIIRKLKDVGL--HG--LEVYRSDG---KLVAYTDLADTYGLLKLGGSD 136 (247)
Q Consensus 81 vaVLAHP~~~~----~~~~li~~l~~~Gl--DG--IEv~~~~~---~~~~~~~lA~~~gLl~TGGSD 136 (247)
.+..|+|+... ..+..++-...+|+ -| .|+.+... ....+.++|++|+|.+..++|
T Consensus 138 ~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~avi~ei~~~~G~~~~~~~~~~fA~~~~l~~v~i~d 204 (217)
T PRK03353 138 FPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFAKQHNMPVLTIED 204 (217)
T ss_pred cceeeccCCcccCCCchHHHHHHHHHcCCCceEEEEEeecCCCCcccHHHHHHHHHHcCCcEEEHHH
Confidence 44555554321 13444554445676 45 47776543 567889999999999988887
No 177
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.09 E-value=3.2e+02 Score=23.78 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=38.2
Q ss_pred HHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcc-cHHHHHHHHHHcC
Q 025874 72 VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYG 128 (247)
Q Consensus 72 I~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~-~~~~~~~lA~~~g 128 (247)
...+...+=++|+-..-. ....++.+.+.+.|+.-||+-.... ..+.+..++++|+
T Consensus 4 ~~~l~~~~~~~v~r~~~~-~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~ 60 (206)
T PRK09140 4 MQPFTKLPLIAILRGITP-DEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG 60 (206)
T ss_pred hhHHHhCCEEEEEeCCCH-HHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC
Confidence 355667777777765421 2234677888899999999986543 4456777888876
No 178
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.06 E-value=2e+02 Score=25.23 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=25.4
Q ss_pred HHHHHHHHHcCCcEEEEecCcc-----------cHHHHHHHHHHcCCceee
Q 025874 94 AAIIRKLKDVGLHGLEVYRSDG-----------KLVAYTDLADTYGLLKLG 133 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv~~~~~-----------~~~~~~~lA~~~gLl~TG 133 (247)
...+++..+.|+++||++...- ....+.++++++|+-+|.
T Consensus 13 ~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 13 YKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred hHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3556667777777777774310 245666777777776664
No 179
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=21.03 E-value=1.8e+02 Score=27.21 Aligned_cols=42 Identities=7% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 114 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 114 (247)
++.|+.+|++| ..| |+|..++. ..+..+.+.|+|||-.-+|.
T Consensus 235 ~~~v~~a~~~G-l~V--~vWTVNd~-~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAAN-IHT--NVYVINEP-WLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCC-CEE--EEECCCCH-HHHHHHHhCCcCEEEeCCHH
Confidence 56778888876 444 45655543 56778888999999888874
No 180
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=21.03 E-value=1.5e+02 Score=27.88 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=47.3
Q ss_pred HhhCCCCceeCCCCCCHHHHHHHHHHcCC------eEEecCCcCCCChHHHHHHHHHcCCcEEEE----ecCc-------
Q 025874 52 YLYDGGPAYSTGSEPLAEVAVQLIHRTGG------LAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRSD------- 114 (247)
Q Consensus 52 yL~~g~payv~~~~~~~~EaI~~Ih~aGG------vaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~~------- 114 (247)
|++.|.|...+. ..+++.++.|++.-+ +.+-++|... .++.++.|+++|++-|.+ ++..
T Consensus 64 ~~GGGTPs~l~~--~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i--~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R 139 (375)
T PRK05628 64 FVGGGTPSLLGA--EGLARVLDAVRDTFGLAPGAEVTTEANPEST--SPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDR 139 (375)
T ss_pred EeCCCccccCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCC--CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 556666655443 345677888877544 3667899654 347888899999886655 3321
Q ss_pred -c---cHHHHHHHHHHcCCc
Q 025874 115 -G---KLVAYTDLADTYGLL 130 (247)
Q Consensus 115 -~---~~~~~~~lA~~~gLl 130 (247)
+ +.....+.+++.|+.
T Consensus 140 ~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 140 THTPGRAVAAAREARAAGFE 159 (375)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 1 234556677777754
No 181
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=20.99 E-value=1.6e+02 Score=25.94 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 114 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 114 (247)
.+.|+.+|++| +.|. .|..+. ...+..+.+.|+|||-.-+|.
T Consensus 199 ~~~v~~~~~~g-~~v~--~WTvn~-~~~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 199 EARVAALKAAG-LRIL--VYTVND-PARARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHHHCC-CEEE--EEeCCC-HHHHHHHHHcCCCEEEeCChH
Confidence 46777777775 3343 234343 356778888899998777654
No 182
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=20.96 E-value=1.7e+02 Score=25.52 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcE
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHG 107 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDG 107 (247)
..=+++|.++||++|+-.+.. ..+.++++.+ -+||
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~---~~~~~~~~l~-~idG 61 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDA---DDEELDELLD-RIDG 61 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS-----HHHHHHHHH-CSSE
T ss_pred HHHHHHHHHcCCEEEEEccCC---CHHHHHHHHh-hcCE
Confidence 345789999999999875532 2344555443 3555
No 183
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.94 E-value=1.3e+02 Score=31.18 Aligned_cols=39 Identities=28% Similarity=0.422 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCcEEEEecC------c---------ccHHHHHHHHHHcCCcee
Q 025874 94 AAIIRKLKDVGLHGLEVYRS------D---------GKLVAYTDLADTYGLLKL 132 (247)
Q Consensus 94 ~~li~~l~~~GlDGIEv~~~------~---------~~~~~~~~lA~~~gLl~T 132 (247)
...+..+++.|+|+|++|-+ . .+..++.++|++.||.++
T Consensus 52 ~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~~GLyv~ 105 (649)
T KOG0496|consen 52 PDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHKAGLYVI 105 (649)
T ss_pred HHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHHCCeEEE
Confidence 46788899999999999832 1 256788999999999874
No 184
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=20.91 E-value=3.1e+02 Score=25.78 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecC---cccHHHHHHHHHHcCCceeecCCCCCCCC
Q 025874 66 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS---DGKLVAYTDLADTYGLLKLGGSDYHGRGG 142 (247)
Q Consensus 66 ~~~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~---~~~~~~~~~lA~~~gLl~TGGSDfHG~~~ 142 (247)
-+++||++.- .+.--.|..+|.. . .+.+.+..++|++=|=++.- .++..++.++|++.++.+ -|.|+=|.-.
T Consensus 55 ~tV~EA~~~~-~a~~svI~Vp~~~-a--adai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~i-iGPncpGiI~ 129 (293)
T COG0074 55 NTVEEAVKET-GANASVIFVPPPF-A--ADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRL-IGPNCPGIIT 129 (293)
T ss_pred HHHHHHHHhh-CCCEEEEecCcHH-H--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEE-ECCCCCccCc
Confidence 4677777766 6666666665532 2 24566778899988888863 468889999999999666 6789988644
Q ss_pred CCCccccCc-----------------cCCHHHHHHHhc-----------cccccchhHHHHHHhhhhcCCC
Q 025874 143 HGESELGSV-----------------KLPVLVLNDFLK-----------VARPIWCGAIKEILESYADEPS 185 (247)
Q Consensus 143 ~~~~~lG~~-----------------~ip~~~l~~i~~-----------~~~piw~~~~k~~l~~~~~~~~ 185 (247)
+....+|-+ .+.++....+.+ .-.||-..-+-+.|+-|-+.|.
T Consensus 130 Pg~~kiGimp~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~ 200 (293)
T COG0074 130 PGECKIGIMPGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPE 200 (293)
T ss_pred CCcceeeechhhhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCcc
Confidence 433344432 124556666654 1267777777777777766653
No 185
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.80 E-value=4.4e+02 Score=23.70 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHHHHhhCCCCceeCCCCCCHH---HHHHHHHHc-CCeEEecCCcCCCCh------HHHHHHHHHcCCcEEEEec-C
Q 025874 45 LKQAFARYLYDGGPAYSTGSEPLAE---VAVQLIHRT-GGLAVLAHPWALKNP------AAIIRKLKDVGLHGLEVYR-S 113 (247)
Q Consensus 45 ~~eaF~~yL~~g~payv~~~~~~~~---EaI~~Ih~a-GGvaVLAHP~~~~~~------~~li~~l~~~GlDGIEv~~-~ 113 (247)
+|+|..+-|..|- +++ +.++.|++. =.+++. |= .|.|+ +..+++++++|+||+=+.. |
T Consensus 57 Iq~a~~~al~~G~---------~~~~~~~~v~~ir~~~~~~plv-~m-~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp 125 (256)
T TIGR00262 57 IQAADLRALRAGM---------TPEKCFELLKKVRQKHPNIPIG-LL-TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP 125 (256)
T ss_pred HHHHHHHHHHcCC---------CHHHHHHHHHHHHhcCCCCCEE-EE-EeccHHhhhhHHHHHHHHHHcCCCEEEECCCC
Confidence 5788888887764 344 445555543 134544 42 33443 6789999999999986654 3
Q ss_pred cccHHHHHHHHHHcCCc
Q 025874 114 DGKLVAYTDLADTYGLL 130 (247)
Q Consensus 114 ~~~~~~~~~lA~~~gLl 130 (247)
..+...+.+.++++|+-
T Consensus 126 ~ee~~~~~~~~~~~gl~ 142 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVK 142 (256)
T ss_pred hHHHHHHHHHHHHCCCc
Confidence 34567888999999854
No 186
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=20.73 E-value=2.9e+02 Score=22.43 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHcCCeEEecCCcC--CC--ChHHHHHHHHHcCCcEEEEecCcc-------------cHHHHHHHHHHc
Q 025874 65 EPLAEVAVQLIHRTGGLAVLAHPWA--LK--NPAAIIRKLKDVGLHGLEVYRSDG-------------KLVAYTDLADTY 127 (247)
Q Consensus 65 ~~~~~EaI~~Ih~aGGvaVLAHP~~--~~--~~~~li~~l~~~GlDGIEv~~~~~-------------~~~~~~~lA~~~ 127 (247)
.|.-+++.+.+....-+=|+-+|.. .. .....+...++.|+ .+|+-+++- ....+.++++..
T Consensus 31 ~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi-~~EI~~~~~l~~~~~~r~~~~~~~~~l~~~~~~~ 109 (150)
T PF01876_consen 31 RPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGI-FFEISYSPLLRSDGSNRRNFISNARRLIRLTKKK 109 (150)
T ss_dssp E-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT--EEEEESHHHHHS-HHHHHHHHHHHHHHHHHHHH-
T ss_pred EcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCE-EEEEEehHhhccCcHHHHHHHHHHHHHHHHhCCC
Confidence 4566788899988888999999873 22 12357777788888 999988641 125667888888
Q ss_pred CCceeecCCCCC
Q 025874 128 GLLKLGGSDYHG 139 (247)
Q Consensus 128 gLl~TGGSDfHG 139 (247)
++++|.|..-+-
T Consensus 110 ~iiiSSgA~~~~ 121 (150)
T PF01876_consen 110 NIIISSGASSPL 121 (150)
T ss_dssp -EEEE---SSGG
T ss_pred CEEEEcCCCChh
Confidence 988887766554
No 187
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.64 E-value=1.7e+02 Score=27.44 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=46.2
Q ss_pred HhhCCCCceeCCCCCCHHHHHHHHHHcC------CeEEecCCcCCCChHHHHHHHHHcCCcEEEE----ecCc-------
Q 025874 52 YLYDGGPAYSTGSEPLAEVAVQLIHRTG------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRSD------- 114 (247)
Q Consensus 52 yL~~g~payv~~~~~~~~EaI~~Ih~aG------GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~~------- 114 (247)
|++.|.|-..+. ..+++.++.|++.- -+.+-++|.... .+.++.|+++|++-|.+ +++.
T Consensus 56 ~~GGGtPs~l~~--~~l~~ll~~i~~~~~~~~~~eitie~np~~lt--~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR 131 (360)
T TIGR00539 56 FIGGGTPNTLSV--EAFERLFESIYQHASLSDDCEITTEANPELIT--AEWCKGLKGAGINRLSLGVQSFRDDKLLFLGR 131 (360)
T ss_pred EeCCCchhcCCH--HHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCC--HHHHHHHHHcCCCEEEEecccCChHHHHHhCC
Confidence 556666654432 23445676666421 478889997653 47788899999886654 3331
Q ss_pred -c---cHHHHHHHHHHcCCc
Q 025874 115 -G---KLVAYTDLADTYGLL 130 (247)
Q Consensus 115 -~---~~~~~~~lA~~~gLl 130 (247)
+ +.....+.+++.|+-
T Consensus 132 ~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 132 QHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 1 234566778887763
No 188
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=20.63 E-value=1e+02 Score=27.57 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc
Q 025874 68 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 114 (247)
Q Consensus 68 ~~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 114 (247)
-++.|+.+|++| +.|. +|..+. ...++.+.+.|+|||-.-+|.
T Consensus 220 ~~~~v~~~~~~G-~~v~--vWTVNd-~~~~~~l~~~GVdgIiTD~P~ 262 (264)
T cd08575 220 WPNLFDHLRKRG-IQVY--LWVLND-EEDFEEAFDLGADGVMTDSPT 262 (264)
T ss_pred CHHHHHHHHhcC-CcEE--EEEECC-HHHHHHHHhcCCCEEEeCCcc
Confidence 357889999875 5554 455454 467788999999999876653
No 189
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=20.59 E-value=1.3e+02 Score=27.38 Aligned_cols=42 Identities=14% Similarity=0.360 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCc
Q 025874 69 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 114 (247)
Q Consensus 69 ~EaI~~Ih~aGGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~ 114 (247)
++.|+.+|++| +.|. +|..++ .+.+..+.+.|+|||-.-+|.
T Consensus 251 ~~~v~~~~~~G-~~v~--vWTVNd-~~~~~~l~~~GVdgIiTD~P~ 292 (300)
T cd08612 251 PSLFRHLQKRG-IQVY--GWVLND-EEEFERAFELGADGVMTDYPT 292 (300)
T ss_pred HHHHHHHHHCC-CEEE--EeecCC-HHHHHHHHhcCCCEEEeCCHH
Confidence 56788888876 4443 455444 467788889999998877764
No 190
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=20.55 E-value=1.7e+02 Score=27.03 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHc-CCeEEecCCcCCCChHHHHHHHHHcCCcEEEEecCcccHHHHHHHHHHcC--CceeecCC
Q 025874 65 EPLAEVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 136 (247)
Q Consensus 65 ~~~~~EaI~~Ih~a-GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv~~~~~~~~~~~~lA~~~g--Ll~TGGSD 136 (247)
.|...++++.|++. |++.|+=|.+. ...+++.+.+.|.|++-+-+. .+.. +..+.++ ..+.||=|
T Consensus 217 ~p~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~-~dl~---e~~~~~~~~~~i~Gni~ 284 (338)
T TIGR01464 217 LPYLKKIIEEVKARLPNVPVILFAKG---AGHLLEELAETGADVVGLDWT-VDLK---EARKRVGPGVAIQGNLD 284 (338)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCC---cHHHHHHHHhcCCCEEEeCCC-CCHH---HHHHHhCCCeeEEeCCC
Confidence 35567889999987 78777766653 346788888899999866553 2332 3344444 46666653
No 191
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.27 E-value=1.5e+02 Score=28.14 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=37.4
Q ss_pred HhhCCCCceeCCCCCCHHHHHHHHHHc----C--CeEEecCCcCCCChHHHHHHHHHcCCcEEEE
Q 025874 52 YLYDGGPAYSTGSEPLAEVAVQLIHRT----G--GLAVLAHPWALKNPAAIIRKLKDVGLHGLEV 110 (247)
Q Consensus 52 yL~~g~payv~~~~~~~~EaI~~Ih~a----G--GvaVLAHP~~~~~~~~li~~l~~~GlDGIEv 110 (247)
|++.|.|...|.. .+++.++.|++. . -+.+=|+|.... .+.++.|+++|++=|.+
T Consensus 60 y~GGGTPs~l~~~--~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~--~e~L~~l~~~Gvnrisl 120 (380)
T PRK09057 60 FFGGGTPSLMQPE--TVAALLDAIARLWPVADDIEITLEANPTSVE--AGRFRGYRAAGVNRVSL 120 (380)
T ss_pred EeCCCccccCCHH--HHHHHHHHHHHhCCCCCCccEEEEECcCcCC--HHHHHHHHHcCCCEEEE
Confidence 6777777665532 245677777762 2 578999997543 37888899999874443
No 192
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=20.16 E-value=1.5e+02 Score=21.64 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=29.9
Q ss_pred hHHHhhCCCCCCHHHHHHHh-CCCCCCCHHHHHHHHHH---cCCCCCHHHHHHHHh
Q 025874 2 ILKLNKLKLPLKWEHVAKIA-GKGVAPGRLHVARAMVE---AGHVENLKQAFARYL 53 (247)
Q Consensus 2 i~kL~~~G~~I~~eev~~~a-~~~~~igRpHIA~aLv~---~G~v~~~~eaF~~yL 53 (247)
+.||+-. ++++-+++.++. -.+..+++..+..+|.+ ++|..-..+.+..||
T Consensus 5 LrkLRya-l~l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 5 LRKLRYA-LDLKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred HHHHHHH-HcCChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 3444422 455566665442 22345788877777773 567666566666666
No 193
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=20.13 E-value=1.2e+02 Score=27.12 Aligned_cols=11 Identities=18% Similarity=-0.055 Sum_probs=7.3
Q ss_pred CCHHHHHHHhC
Q 025874 12 LKWEHVAKIAG 22 (247)
Q Consensus 12 I~~eev~~~a~ 22 (247)
-+++||++...
T Consensus 121 PtL~evl~~~~ 131 (282)
T cd08605 121 PTLEEVFSEVP 131 (282)
T ss_pred CCHHHHHHhCC
Confidence 46777777653
No 194
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=20.06 E-value=1.3e+02 Score=28.38 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=48.3
Q ss_pred HhhCCCCceeCCCCCCHHHHHHHHHHc----CCeEEecCCcCCCChHHHHHHHHHcCCcEEEE----ecCc--------c
Q 025874 52 YLYDGGPAYSTGSEPLAEVAVQLIHRT----GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEV----YRSD--------G 115 (247)
Q Consensus 52 yL~~g~payv~~~~~~~~EaI~~Ih~a----GGvaVLAHP~~~~~~~~li~~l~~~GlDGIEv----~~~~--------~ 115 (247)
|++.|.|..++... +++.++.|++. --+.+-++|.... ++.++.++++|+.-|.+ ++.. +
T Consensus 61 y~GGGTPs~L~~~~--l~~ll~~i~~~~~~~~eitiE~nP~~lt--~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~ 136 (353)
T PRK05904 61 YLGGGTPNCLNDQL--LDILLSTIKPYVDNNCEFTIECNPELIT--QSQINLLKKNKVNRISLGVQSMNNNILKQLNRTH 136 (353)
T ss_pred EECCCccccCCHHH--HHHHHHHHHHhcCCCCeEEEEeccCcCC--HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 67777776655432 35667666653 2488999997553 47888899999876544 3321 1
Q ss_pred ---cHHHHHHHHHHcCCc
Q 025874 116 ---KLVAYTDLADTYGLL 130 (247)
Q Consensus 116 ---~~~~~~~lA~~~gLl 130 (247)
+.....+.+++.|+.
T Consensus 137 ~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 137 TIQDSKEAINLLHKNGIY 154 (353)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 234566777887753
Done!