BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025876
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L EA+ G+ + L+++ + + + S TPLH +A GH + K L++ ++
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVA-DQDGRIPLHLAAMRGRVEVVQ 133
+ DS +PLH AA EGH +IVK LL +K A + A D DGR PLH AA G E+V+
Sbjct: 64 NAK-DSDGRTPLHYAAKEGHKEIVK--LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 134 ELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD 176
LIS D G T L EH + +L WL+
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 80/162 (49%), Gaps = 5/162 (3%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L EA+ G+ + L+++ + + + S +TPLH++A GH + K LL+ +
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADV---NASDSDGKTPLHLAAENGHKEVVKLLLSQGAD- 62
Query: 75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
DS +PLHLAA GH ++VK LL D D DG+ PLHLAA G EVV+
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLHLAAENGHKEVVKL 121
Query: 135 LISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD 176
L+S D G T L EH + +L WL+
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 8/139 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + K TPLH++A GHL+ + LL
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 69
Query: 71 KPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
++ AK+ D ++PLHLAA EGH++IV+ LL A D D+DG PLHLAA G +
Sbjct: 70 GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 126
Query: 130 EVVQELISANFD-SALVKF 147
E+V+ L+ A D +A KF
Sbjct: 127 EIVEVLLKAGADVNAQDKF 145
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 55 SALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD 113
+A G D + L+ + ++ AK+ D ++PLHLAA EGH++IV+ LL A D D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKD 77
Query: 114 QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+DG PLHLAA G +E+V+ L+ A D G T LH A
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 8/139 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + K TPLH++A GHL+ + LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 57
Query: 71 KPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
++ AK+ D ++PLHLAA EGH++IV+ LL A D D+DG PLHLAA G +
Sbjct: 58 GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 114
Query: 130 EVVQELISANFD-SALVKF 147
E+V+ L+ A D +A KF
Sbjct: 115 EIVEVLLKAGADVNAQDKF 133
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 55 SALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD 113
+A G D + L+ + ++ AK+ D ++PLHLAA EGH++IV+ LL A D D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKD 65
Query: 114 QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+DG PLHLAA G +E+V+ L+ A D G T LH A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
TPLH++A GHL+ K LL ++ + D +PLHLAA GH+++VK LL A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPS 169
D++GR PLHLAA G +EVV+ L+ A D +G T LH A + L +L
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 170 NYAAW 174
A+
Sbjct: 122 EAGAY 126
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
+GR PLHLAA G +EVV+ L+ A D +G T LH A + L +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 78/139 (56%), Gaps = 8/139 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + K TPLH++A GHL+ + LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 57
Query: 71 KPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
++ AK+ D ++PLHLAA EGH++IV+ LL A D D+DG PLHLAA G +
Sbjct: 58 GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 114
Query: 130 EVVQELISANFD-SALVKF 147
E+V+ L+ A D +A KF
Sbjct: 115 EIVEVLLKAGADVNAQDKF 133
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 55 SALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD 113
+A G D + L+ + ++ AK+ D ++PLHLAA EGH++IV+ LL A D D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKD 65
Query: 114 QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+DG PLHLAA G +E+V+ L+ A D G T LH A
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + + TPLH++A GHL+ + LL H
Sbjct: 13 DLGRKLLEAARAGQDDEVRILMANGADV---NAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D ++PLHLAA GH++IV E+LL N D DG PLHLAA G +E
Sbjct: 70 GADVDAS-DVFGYTPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLE 127
Query: 131 VVQELISANFD-SALVKF 147
+V+ L+ D +A KF
Sbjct: 128 IVEVLLKHGADVNAQDKF 145
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D+ +PLHLAA GH++IV E+LL + +D G PLHLAA G +E+V+ L+
Sbjct: 44 DNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 139 NFDSALVKFHGDTVLHFKAE 158
D + G T LH A+
Sbjct: 103 GADVNAMDSDGMTPLHLAAK 122
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN AD G PLHLAA G +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAA 88
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L EA+ G+ + L+++ + + S TPLH +A GH + K LL+ K
Sbjct: 7 RLIEAAENGNKDRVKDLLENGA---DPNASDSDGRTPLHYAAENGHKEIVKLLLS-KGAD 62
Query: 75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
DS +PLH AA GH +IVK LL D D DGR PLH AA G E+V+
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKL 121
Query: 135 LISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD 176
L+S D G T L EH + +L WL+
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + + TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADV---NAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D+L +PLHLAA GH++IV E+LL N D +G PLHLAA RG +E
Sbjct: 70 GADV-NAYDTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
+V+ L+ D +A KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D + +PLHLAA GH++IV E+LL N D G PLHLAA G +E+V+ L+
Sbjct: 44 DVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 139 NFDSALVKFHGDTVLHFKAE--HLSLC 163
D +G T LH A HL +
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIV 129
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN AD G PLHLAA G +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA 88
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + T TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV-NARDFTGW--TPLHLAAHFGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ + DSL +PLHLAA GH++IV E+LL N +D G PLHLAA RG +E
Sbjct: 70 GADVNAK-DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
+V+ L+ D +A KF
Sbjct: 128 IVEVLLKNGADVNAQDKF 145
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLHLAA GH++IV E+LL N D G PLHLAA RG +E+V+ L+ D
Sbjct: 49 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 144 LVKFHGDTVLHFKAE--HLSLC 163
HG T LH A+ HL +
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIV 129
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D G PLHLAA G +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAA 88
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L EA+ G+ + L+++ + + + S TPLH +A GH + K L++ ++
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
+ DS +PLH AA GH ++VK LL++ D DGR PLH AA G EVV+
Sbjct: 64 NAK-DSDGRTPLHHAAENGHKEVVK-LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
Query: 135 LISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD 176
LIS D G T L EH + +L WL+
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + T + L TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV-NATDASGL--TPLHLAATYGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ +D + +PLHLAA GH++IV+ LL D V D G PLHLAA+ G +E
Sbjct: 70 GADV-NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKHGAD 138
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLHLAA GH++IV+ LL D + D G PLHLAA+ G +E+V+ L+ D
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 144 LVKFHGDTVLHFKA 157
V GDT LH A
Sbjct: 108 AVDTWGDTPLHLAA 121
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKEL 101
++ + TPLH++AL+GHL+ + LL H ++ +D+ +PLHLAA GH++IV+ L
Sbjct: 74 NAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 102 LLANKDACLVADQDGRIPLHLAAMRGR---VEVVQEL 135
L D D+ G+ ++ G E++Q+L
Sbjct: 133 LKHGADVN-AQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D G PLHLAA G +E+V+ L+ D + G T LH A
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAA 88
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 6/138 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + + TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ + DSL +PLHLAA GH+++V E+LL N D +G PLHLAA G +E
Sbjct: 70 GADVNAD-DSLGVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
+V+ L+ D +A KF
Sbjct: 128 IVEVLLKHGADVNAQDKF 145
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D + +PLHLAA GH++IV E+LL N D G PLHLAA RG +EVV+ L+
Sbjct: 44 DHVGWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 139 NFDSALVKFHGDTVLHFKAE--HLSLC 163
D +G T LH A HL +
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIV 129
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAE 158
+L+AN +D G PLHLAA G +E+V+ L+ D G T LH A+
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAAD 89
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + +TPLH++A+ GHL+ + LL H
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D + +PLHLAA GH++IV E+LL N D G PLHLAA G +E
Sbjct: 70 GADV-NAADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
+V+ L+ D +A KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ 114
+A G D + L+ + ++ E DS K +PLHLAA +GH++IV E+LL + AD+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIV-EVLLKHGADVNAADK 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAE--HLSLC 163
G PLHLAA+ G +E+V+ L+ D +G T LH A+ HL +
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIV 129
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA--E 158
+L+AN D G+ PLHLAA++G +E+V+ L+ D GDT LH A
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYG 91
Query: 159 HLSLCTQRLPSNYAAWLDWTLSICY-PKHLTIETRGAVAILMMPSVGGITFFQESFAERS 217
HL + L + A ++ T + + P HL + + ++ G Q+ F + +
Sbjct: 92 HLEIVEVLLKN--GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 218 L 218
Sbjct: 150 F 150
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
TPLH++A GHL+ K LL ++ + D +PLHLAA GH+++VK LL A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISA 138
D++GR PLHLAA G +EVV+ L+ A
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLHLAA GH+++VK LL A D D++GR PLHLAA G +EVV+ L+ A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 144 LVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW 174
+G T LH A + L +L A+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
+GR PLHLAA G +EVV+ L+ A D +G T LH A + L +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + T + L TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV-NATDASGL--TPLHLAATYGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ +D +PLHLAA GH++IV+ LL D V D G PLHLAA+ G +E
Sbjct: 70 GADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKHGAD 138
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLHLAA GH++IV+ LL D + D G PLHLAA+ G +E+V+ L+ D
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 144 LVKFHGDTVLHFKA 157
V GDT LH A
Sbjct: 108 AVDTWGDTPLHLAA 121
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
TPLH++AL+GHL+ + LL H ++ +D+ +PLHLAA GH++IV+ LL D
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 110 LVADQDGRIPLHLAAMRGR---VEVVQEL 135
D+ G+ ++ G E++Q+L
Sbjct: 141 -AQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D G PLHLAA G +E+V+ L+ D + G T LH A
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAA 88
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + L TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D+ +PLHLAA GH++IV E+LL + D +G PLHLAA G +E
Sbjct: 70 GADV-NAWDNYGATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLAAYDGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
+V+ L+ D +A KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D L H+PLHLAA GH++IV+ LL D D G PLHLAA G +E+V+ L+
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 139 NFDSALVKFHGDTVLHFKA 157
D + G T LH A
Sbjct: 103 GADVNAKDYEGFTPLHLAA 121
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
+L+AN D G PLHLAA G +E+V+ L+ D +G T LH A++
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADN 90
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
KL EA+ G + LM + + + + + TPLH++A GHL+ + LL + ++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV---NATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 75 -AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
A +L + +PLHLAAA GH++IV E+LL + D DG PLHLAA G +E+V+
Sbjct: 74 NASDLTGI--TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 134 ELISANFD-SALVKF 147
L+ D +A KF
Sbjct: 131 VLLKHGADVNAQDKF 145
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D+ ++PLHLAA+ GH++IV E+LL N +D G PLHLAA G +E+V+ L+
Sbjct: 44 DNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 139 NFDSALVKFHGDTVLHFKAEH 159
D G T LH A++
Sbjct: 103 GADVNAYDNDGHTPLHLAAKY 123
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D DG PLHLAA G +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAA 88
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + S TPLH++A +GH + + LL H
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGS---TPLHLAAWIGHPEIVEVLLKH 69
Query: 71 KPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
++ A++ D +PLHLAA GH++IV+ LL D D G PLHLAA RG +
Sbjct: 70 GADVNARDTDGW--TPLHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHL 126
Query: 130 EVVQELISANFD-SALVKF 147
E+V+ L+ D +A KF
Sbjct: 127 EIVEVLLKHGADVNAQDKF 145
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D +PLHLAA GH +IV E+LL + D DG PLHLAA G +E+V+ L+
Sbjct: 44 DDQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 139 NFDSALVKFHGDTVLHFKAE--HLSLC 163
D +G T LH A+ HL +
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIV 129
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHL 160
+L+AN D G PLHLAA G E+V+ L+ D G T LH A++
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNG 91
Query: 161 SLCTQRLPSNYAAWLDWTLSICY---PKHLTIETRGAVAIL-MMPSVGGITFFQESFAER 216
L + Y A D Y P HL + RG + I+ ++ G Q+ F +
Sbjct: 92 HLEIVEVLLKYGA--DVNAQDAYGLTPLHLAAD-RGHLEIVEVLLKHGADVNAQDKFGKT 148
Query: 217 SLIV 220
+ +
Sbjct: 149 AFDI 152
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLR-ETPLHISALLGHLDFTKALLNHKPEL 74
L+ AS G + + L+Q + ++++++ ETPLH++A GH + K LL +K ++
Sbjct: 18 LHVASFMGHLPIVKNLLQRGA----SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 75 -AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
AK D +PLH AA GH +VK LLL N +A G PLH+AA G VE V
Sbjct: 74 NAKAKDD--QTPLHCAARIGHTNMVK-LLLENNANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 134 ELISANFDSALVKFHGDTVLHFKAEH 159
L+ A + G T LH A++
Sbjct: 131 ALLEKEASQACMTKKGFTPLHVAAKY 156
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 49 ETPLHISALLGHLDFTKALL--NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLAN- 105
+TPLH +A +GH + K LL N P LA + H+PLH+AA EGHV+ V LL
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLAT---TAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQ 165
AC+ + G PLH+AA G+V V + L+ + +G T LH H +L
Sbjct: 138 SQACMT--KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 166 RL 167
+L
Sbjct: 196 KL 197
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 16/178 (8%)
Query: 16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN-----H 70
L+ A+ G VR L++ D+ + TPLH++ +LD K LL H
Sbjct: 150 LHVAAKYGKVRVAELLLERDA---HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 206
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
P ++PLH+AA + V++ + LL A + Q G PLHLAA G E
Sbjct: 207 SPAWNG------YTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAE 259
Query: 131 VVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICY-PKHL 187
+V L+S + L G T LH A+ + + + +D T + Y P H+
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA 104
T + TPLH+++ G++ K LL H+ ++ + L +SPLH AA +GH IV LLL
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVT-LLLK 365
Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
N + DG PL +A G + V L
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 6/138 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + + +TPLH++A +GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ LD +PLHLAA GH++IV+ LL D D G PLHLAA G +E
Sbjct: 70 GADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
+V+ L+ D +A KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHL 160
+L+AN D G PLHLAA G +E+V+ L+ D + F G T LH A+
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 161 SLCTQRLPSNYAAWLDWTLSI-CYPKHLTIETRGAVAILMMPSVGGITFFQESFAERSL 218
L + Y A ++ +I P HL +T + ++ G Q+ F + +
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + L+ + + + ++ + TPLH++A+ GHL+ + LL H
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADV---NAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D +PLHLAA GH++IV+ LL D D G PLHLAA G +E
Sbjct: 70 GADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKYGAD 138
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+D+ +PLHLAA GH++IV E+LL + AD G PLHLAAM G +E+V+ L+
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 138 ANFDSALVKFHGDTVLHFKAE 158
D G T LH A+
Sbjct: 102 YGADVNAFDMTGSTPLHLAAD 122
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA--E 158
+L+AN D G PLHLAA+ G +E+V+ L+ D +G T LH A
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG 91
Query: 159 HLSLCTQRLPSNYAAWLD-WTLSICYPKHLTIETRGAVAILMMPSVGGITFFQESFAERS 217
HL + L Y A ++ + ++ P HL + + ++ G Q+ F + +
Sbjct: 92 HLEIVEVLLK--YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 218 L 218
Sbjct: 150 F 150
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + + TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ +D +PL LAA GH++IV E+LL N D +G PLHLAAM G +E
Sbjct: 70 GADV-NAVDHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKNGAD 138
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ 114
+A G D + L+ + ++ E D+ +PLHLAA GH++IV E+LL N D
Sbjct: 21 AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDH 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
G PL LAA+ G +E+V+ L+ D G T LH A
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69
+D KL EA+ G + LM + + + T L TPLH++A G L+ + LL
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADV-NATDDNGL--TPLHLAAANGQLEIVEVLLK 60
Query: 70 HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
+ ++ DS +PLHLAA +GH++IV+ LL D D+ G PLHLAA+ G++
Sbjct: 61 NGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQL 118
Query: 130 EVVQELISANFD 141
E+V+ L+ D
Sbjct: 119 EIVEVLLKHGAD 130
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLHLAAA G ++IV E+LL N +D G PLHLAA G +E+V+ L+ D
Sbjct: 41 TPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 144 LVKFHGDTVLHFKA 157
G T LH A
Sbjct: 100 AYDRAGWTPLHLAA 113
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFH 148
AAA G V+ +L+AN D +G PLHLAA G++E+V+ L+ D
Sbjct: 13 AAAAGQDDEVR-ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 149 GDTVLHFKA 157
G T LH A
Sbjct: 72 GITPLHLAA 80
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + TPLH++A +GHL+ + LL +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGA---DANAYDHYGRTPLHMAAAVGHLEIVEVLLRN 57
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ +D+ +PLHLAA+ GH++IV+ LL D D G PL+LAA G +E
Sbjct: 58 GADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLE 115
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 116 IVEVLLKHGAD 126
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
A D +PLH+AAA GH++IV E+LL N D +G PLHLAA G +E+V+
Sbjct: 28 ANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 135 LISANFDSALVKFHGDTVLHFKA 157
L+ D G T L+ A
Sbjct: 87 LLKYGADVNAKDATGITPLYLAA 109
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D GR PLH+AA G +E+V+ L+ D V +G T LH A
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAA 76
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + TPLH+ GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NANDWFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D +PLHLAA GH++IV+ LL D + D G PLHLAA G +E
Sbjct: 70 AADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLE 127
Query: 131 VVQELISANFD-SALVKF 147
+V+ L+ D +A KF
Sbjct: 128 IVEVLLKYGADVNAQDKF 145
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLHL GH++I++ LL D +D+ G PLHLAA RG +E+V+ L+ D
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 144 LVKFHGDTVLHFKAE--HLSLC 163
+ + G T LH AE HL +
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIV 129
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
TPLH++A GHL+ + LL + ++ +D ++PLHLAA +GH++IV+ LL D
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 110 LVADQDGRIPLHLAAMRGR---VEVVQEL 135
D+ G+ ++ G E++Q+L
Sbjct: 141 -AQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHL 160
+L+AN D G PLHL G +E+++ L+ D G T LH A
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 161 SLCTQRLPSNYAAWLDWTLSICY-PKHLTIETRGAVAILMMPSVGGITFFQESFAERSL 218
L + Y A ++ Y P HL E + ++ G Q+ F + +
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAF 150
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69
ED L EA+ + ++ L+++ +L+ K + S T LH++A GH + + LL+
Sbjct: 42 EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS---TCLHLAAKKGHYEVVQYLLS 98
Query: 70 HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
+ D +P+ A HV +VK LLL+ + D + I LH AA G V
Sbjct: 99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVK-LLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 130 EVVQELISANFDSALVKFHGDTVLHFKA 157
++ + L++A D V HGD+ LH A
Sbjct: 158 DIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSL---KHSPLHLAAAEGHVQIVKELLLA 104
+ +PLH +A GH+D L+ + +D+ + +PL AA H++ VK L+
Sbjct: 11 KRSPLHAAAEAGHVDICHMLV----QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-- 64
Query: 105 NKDACLV--ADQDGRIPLHLAAMRGRVEVVQELIS 137
K LV D +G LHLAA +G EVVQ L+S
Sbjct: 65 -KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 82 KHSPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
K SPLH AA GHV I L+ AN D C +D R PL AA +E V+ LI A
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAVKYLIKA- 66
Query: 140 FDSALV---KFHGDTVLHFKAE 158
ALV G T LH A+
Sbjct: 67 --GALVDPKDAEGSTCLHLAAK 86
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
TP+ + H+D K LL+ ++ D+ ++ LH AA G V I E+LLA K
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDL 170
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVL 153
+ G PLH+AA R + V +S + D L G+T L
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 37 LILRKTSLTSLRETP----LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE 92
L+L K S ++R+ LH +A G +D + LL K +L ++ SPLH+AA E
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARE 187
Query: 93 GHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
V L + D L +++G PL A++ +V ++ A DSA
Sbjct: 188 NRYDCVVLFLSRDSDVTL-KNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
TPLH +A GH + K LL+ ++ A+ D ++PLHLAA GH +IVK LLLA
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIVK-LLLAKGA 66
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
+DG P HLA G E+V+ L + D
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLH AA GH + VK+LL D + +DG PLHLAA G E+V+ L++ D
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 144 LVKFHGDTVLHF 155
G+T H
Sbjct: 70 ARSKDGNTPEHL 81
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 114 QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAE 158
+DG PLH AA G E V++L+S D G+T LH A+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + +L TPLH++A LGHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
++ E D+ +PLHLAA GH++IV E+LL + D+ G+ ++ G
Sbjct: 70 GADVNAE-DNFGITPLHLAAIRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
E++Q+L
Sbjct: 128 LAEILQKL 135
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
LD +PLHLAA GH++IV+ LL D D G PLHLAA+RG +E+V+ L+
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 138 ANFD-SALVKF 147
D +A KF
Sbjct: 102 HGADVNAQDKF 112
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D+DG PLHLAA G +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
DED L+ A+ G + + L++ + + + + TPLH++A+ GHL+ + LL
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADV---NAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 69 NHKPEL 74
H ++
Sbjct: 101 KHGADV 106
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + ++ TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
++ DS +PLHLAA GH++IV+ LL D D+ G+ ++ G
Sbjct: 70 GADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
E++Q+L
Sbjct: 128 LAEILQKL 135
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+D +PLHLAA GH++IV E+LL + +D GR PLHLAA G +E+V+ L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD-SALVKF 147
D +A KF
Sbjct: 102 YGADVNAQDKF 112
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D G PLHLAA RG +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 47 LRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA 104
L TPLH + GHL L+ + P L +D S +HLAA GH IV L+
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 105 NKDACLVADQDGRIPLHLAAMRGR-VEVVQELISANFDSALV-KFHGDTVLHF 155
+D ++ DQ+G PL AA R V+ + L++ N L K+H +T LH+
Sbjct: 132 GQDVDMM-DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
T LH +A+ +D K ++ + + L +PLH A +GH+ +V +L+ D
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
L+ D +G +HLAA G +V LI+ D ++ +G T L + A
Sbjct: 104 LI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
+ ++ +L EA+ G V ++ L S+ R + + TPLH +A + + LL
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 69 NHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
H ++ AK+ L PLH A + GH ++ ELL+ + VAD PLH AA +G
Sbjct: 65 QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 128 RVEVVQELISANFDSALVKFHGDTVL 153
+ E+ + L+ D G+T L
Sbjct: 122 KYEICKLLLQHGADPTKKNRDGNTPL 147
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
+ ++ +L EA+ G V ++ L S+ R + + TPLH +A + + LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 69 NHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
H ++ AK+ L PLH A + GH ++ ELL+ + VAD PLH AA +G
Sbjct: 63 QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 128 RVEVVQELISANFDSALVKFHGDTVL 153
+ E+ + L+ D G+T L
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPL 145
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
+ ++ +L EA+ G V ++ L S+ R + + TPLH +A + + LL
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 66
Query: 69 NHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
H ++ AK+ L PLH A + GH ++ ELL+ + VAD PLH AA +G
Sbjct: 67 QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 128 RVEVVQELISANFDSALVKFHGDTVL 153
+ E+ + L+ D G+T L
Sbjct: 124 KYEICKLLLQHGADPTKKNRDGNTPL 149
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 48 RETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
+ TPLH++A + + LL H ++ AK+ L PLH A + GH ++ ELLL +
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL--VPLHNACSYGHYEVT-ELLLKH- 113
Query: 107 DACLVA-DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVL 153
AC+ A D PLH AA + RVEV L+S D LV HG + +
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17 YEASLRGSVRSLN-TLMQSDSLILRKTSLTSLRE----TPLHISALLGHLDFTKALLNHK 71
+E +L +V SL+ Q L+LRK + + + TPLH++A H D + L H
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
Query: 72 PELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV 131
++ LDSL + LH AA GH+Q + LL D +++ Q AA G E
Sbjct: 271 AKM-NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG-----FTAAQMGN-EA 323
Query: 132 VQELIS 137
VQ+++S
Sbjct: 324 VQQILS 329
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLH+AA H ++ E+L + D G+ LH AA+ G ++ + L+S D +
Sbjct: 249 TPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 144 LVKFHGDTVLHFKAE 158
++ G T E
Sbjct: 308 IISLQGFTAAQMGNE 322
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
AA G+ + + LL C +D PLHLAA RV +VQ L+ D
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + ++ TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
++ D +PLHLAA GH++IV+ LL D D+ G+ ++ G
Sbjct: 70 GADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
E++Q+L
Sbjct: 128 LAEILQKL 135
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+D +PLHLAA GH++IV E+LL + D GR PLHLAA G +E+V+ L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD-SALVKF 147
D +A KF
Sbjct: 102 YGADVNAQDKF 112
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D G PLHLAA RG +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + ++ TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
++ D +PLHLAA GH++IV+ LL D D+ G+ ++ G
Sbjct: 70 GADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
E++Q+L
Sbjct: 128 LAEILQKL 135
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+D +PLHLAA GH++IV E+LL + +D GR PLHLAA G +E+V+ L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD-SALVKF 147
D +A KF
Sbjct: 102 YGADVNAQDKF 112
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D G PLHLAA RG +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
++EA++ G SL L+ + +T+ +PLH + L GHL K LL H ++
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV- 118
Query: 76 KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + H+PL A G V LL A + + D P+H AA RG VE V L
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVN--LLLQHGASVQPESDLASPIHEAARRGHVECVNSL 176
Query: 136 IS--ANFDSALVKFHGDTVLHFKAEHLS-LCTQRL 167
I+ N D + H T L+ E+ C ++L
Sbjct: 177 IAYGGNIDHKI--SHLGTPLYLACENQQRACVKKL 209
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
++EA++ G SL L+ + +T+ +PLH + L GHL K LL H ++
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV- 62
Query: 76 KELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + H+PL A G V LL A + + D P+H AA RG VE V L
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVN--LLLQHGASVQPESDLASPIHEAARRGHVECVNSL 120
Query: 136 IS--ANFDSALVKFHGDTVLHFKAEHLS-LCTQRL 167
I+ N D + H T L+ E+ C ++L
Sbjct: 121 IAYGGNIDHKIS--HLGTPLYLACENQQRACVKKL 153
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
+PLH++AL G D LL H A ++ + PLHLA +GH Q+VK LL +N
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP- 145
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
D G PL A G E+V L+ G+T LH
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 111 VADQDGRIPLHLAAMRGRVEVV 132
V QDG PLH+AA+ GR +++
Sbjct: 81 VTSQDGSSPLHVAALHGRADLI 102
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D H+PLHLAA GH++IV E+LL N GR PLHLAA +E+V+ L+
Sbjct: 44 DYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 139 NFD-SALVKF 147
D +A KF
Sbjct: 103 GADVNAQDKF 112
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
TPLH++A+LGHL+ + LL + ++ ++ + +PLHLAA H++IV E+LL +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR-TPLHLAAWADHLEIV-EVLLKHGADV 106
Query: 110 LVADQDGRIPLHLAAMRGR---VEVVQEL 135
D+ G+ ++ G E++Q+L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFK--AE 158
+L AN D G PLHLAAM G +E+V+ L+ D G T LH A+
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 159 HLSLC 163
HL +
Sbjct: 92 HLEIV 96
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ 114
+A G D + L+ + ++ E D + +PLHLAA H++IV E+LL N D
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIV-EVLLKNGADVNAIDA 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFD-SALVKF 147
G PLHL AM G +E+V+ L+ D +A KF
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF 112
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D+ G PLHLAAM +E+V+ L+ D + G+T LH A
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVA 88
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 42 TSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
++ ++ ETPLH+ A+ GHL+ + LL H ++
Sbjct: 74 NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D SPLH A EG +V E+L+ V ++ PLHLAA G ++VQ+L+
Sbjct: 36 DDHGFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 139 NFDSALVKFHGDTVLHF 155
D V HG+ LH+
Sbjct: 95 KADINAVNEHGNVPLHY 111
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
+PLH + G + L+ + ++ +PLHLAA+ GH IV++LL D
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDT-----------VLHFKAE 158
V ++ G +PLH A G+ +V ++L++ ++ +G+ +L +AE
Sbjct: 100 AV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158
Query: 159 HLSLCTQRLPSNYAAW 174
+ R+P W
Sbjct: 159 KMGQNLNRIPYKDTFW 174
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 37 LILRKTSLTSLR---ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG 93
LI+R + + +TPLH++A GH D + LL +K ++ ++ + PLH A G
Sbjct: 58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWG 116
Query: 94 HVQIVKELLLANKDACLVADQDGRIPLHLA 123
Q+ ++ L+AN + ++ G +P+ A
Sbjct: 117 QDQVAED-LVANGALVSICNKYGEMPVDKA 145
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDT 151
EG+ V+ L ++ D G PLH A GR VV+ LI ++ DT
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 74
Query: 152 VLHFKAEH 159
LH A H
Sbjct: 75 PLHLAASH 82
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D SPLH A EG +V E+L+ V ++ PLHLAA G ++VQ+L+
Sbjct: 31 DDHGFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 139 NFDSALVKFHGDTVLHF 155
D V HG+ LH+
Sbjct: 90 KADINAVNEHGNVPLHY 106
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 13/136 (9%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
+PLH + G + L+ + ++ +PLHLAA+ GH IV++LL D
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDT-----------VLHFKAE 158
V ++ G +PLH A G+ +V ++L++ ++ +G+ +L +AE
Sbjct: 95 AV-NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 153
Query: 159 HLSLCTQRLPSNYAAW 174
+ R+P W
Sbjct: 154 KMGQNLNRIPYKDTFW 169
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 37 LILRKTSLTSLR---ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG 93
LI+R + + +TPLH++A GH D + LL +K ++ ++ + PLH A G
Sbjct: 53 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWG 111
Query: 94 HVQIVKELLLANKDACLVADQDGRIPLHLA 123
Q+ ++ L+AN + ++ G +P+ A
Sbjct: 112 QDQVAED-LVANGALVSICNKYGEMPVDKA 140
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%)
Query: 92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDT 151
EG+ V+ L ++ D G PLH A GR VV+ LI ++ DT
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDT 69
Query: 152 VLHFKAEH 159
LH A H
Sbjct: 70 PLHLAASH 77
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D ++PLHLAA H++IV E+LL + D DG PLHLAA+ G +E+V+ L+
Sbjct: 44 DRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 139 NFD-SALVKF 147
D +A KF
Sbjct: 103 GADVNAQDKF 112
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + + TPLH++A HL+ + LL H
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NANDRKGNTPLHLAADYDHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
++ D+ +PLHLAA GH++IV E+LL + D+ G+ ++ G
Sbjct: 70 GADVNAH-DNDGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
E++Q+L
Sbjct: 128 LAEILQKL 135
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D+ G PLHLAA +E+V+ L+ D G T LH A
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAA 88
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + L +PLH++A GH T+ LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLL-- 54
Query: 71 KPELAKELDS-LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
+ ++++ + + +PLH+AA+EGH IV E+LL + D LH A
Sbjct: 55 RAGVSRDARTKVDRTPLHMAASEGHANIV-EVLLKHGADVNAKDMLKMTALHWATEHNHQ 113
Query: 130 EVVQELISANFD 141
EVV+ LI D
Sbjct: 114 EVVELLIKYGAD 125
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 56 ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD 115
A G L+ K + LA D + LH A + GH +IV+ LL + V D+D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 71
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
G PLH+AA GR E+V+ L+ V +G T LH+ A
Sbjct: 72 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 115
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 23 GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82
G + L + +D + +T S T LH + GH + + LL + + D
Sbjct: 18 GKLEELKESILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAG 74
Query: 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
SPLH+AA+ G +IVK LL V +Q+G PLH AA + R E+ L+ +
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 143 ALVKFHGDTVLHFKA 157
+ T +H A
Sbjct: 134 DAKDHYEATAMHRAA 148
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 50 TPLHISALLGHLDFTKALL--NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
TPLH +A + LL P+ AK D + + +H AAA+G+++++ +LL K
Sbjct: 109 TPLHYAASKNRHEIAVMLLEGGANPD-AK--DHYEATAMHRAAAKGNLKMI-HILLYYKA 164
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
+ + D +G PLHLA RVE + L+S + T L L L +R+
Sbjct: 165 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 224
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 56 ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD 115
A G LD K + LA D + LH A + GH +IV+ LL + V D+D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 70
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
G PLH+AA GR E+V+ L+ V +G T LH+ A
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 23 GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82
G + L + +D + +T S T LH + GH + + LL + + D
Sbjct: 17 GKLDELKERILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAG 73
Query: 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
SPLH+AA+ G +IVK LL+ V +Q+G PLH AA + R E+ L+ +
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 143 ALVKFHGDTVLHFKA 157
+ T +H A
Sbjct: 133 DAKDHYDATAMHRAA 147
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 50 TPLHISALLGHLDFTKALL--NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
TPLH +A + LL P+ D+ + +H AAA+G++++V +LL K
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAAKGNLKMV-HILLFYKA 163
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
+ + D +G PLHLA RVE + L++ + T L L L +RL
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 56 ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD 115
A G L+ K + LA D + LH A + GH +IV+ LL + V D+D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 70
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
G PLH+AA GR E+V+ L+ V +G T LH+ A
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAA 114
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 23 GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82
G + L + +D + +T S T LH + GH + + LL + + D
Sbjct: 17 GKLEELKESILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAG 73
Query: 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
SPLH+AA+ G +IVK LL V +Q+G PLH AA + R E+ L+ +
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 143 ALVKFHGDTVLHFKA 157
+ T +H A
Sbjct: 133 DAKDHYEATAMHRAA 147
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 50 TPLHISALLGHLDFTKALL--NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
TPLH +A + LL P+ AK D + + +H AAA+G+++++ +LL K
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPD-AK--DHYEATAMHRAAAKGNLKMI-HILLYYKA 163
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
+ + D +G PLHLA RVE + L+S + T L L L +R+
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRM 223
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 23 GSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82
G + L + +D + +T S T LH + GH + + LL + + D
Sbjct: 17 GKLDELKERILADKSLATRTDQDS--RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAG 73
Query: 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
SPLH+AA+ G +IVK LL+ V +Q+G PLH AA + R E+ L+ +
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 143 ALVKFHGDTVLHFKA 157
+ T +H A
Sbjct: 133 DAKDHYDATAMHRAA 147
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 56 ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD 115
A G LD K + LA D + LH A + GH +IV+ LL + V D+D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 70
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
G PLH+AA G E+V+ L+ V +G T LH+ A
Sbjct: 71 DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 50 TPLHISALLGHLDFTKALL--NHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
TPLH +A + LL P+ D+ + +H AAA+G++++V +LL K
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAAKGNLKMV-HILLFYKA 163
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167
+ + D +G PLHLA RVE + L++ + T L L L +RL
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 16 LYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
L+ AS++G + S+ L+Q+ S K TPLH + GHL + LL HK L
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVVELLLQHK-ALV 69
Query: 76 KELDSLKHSPLHLAAAEGHVQIVKELL 102
SPLH AA GHV IVK LL
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
ET LHI+++ G + + LL + + + D +PLH A GH+++V ELLL +K
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVV-ELLLQHKAL 68
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG 149
PLH AA G V++V+ L+S V G
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM + + + K TPL+++ GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL---TPLYLATAHGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
++ +D++ +PLHLAA GH++I E+LL + D+ G+ ++ G
Sbjct: 70 GADV-NAVDAIGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDISIGNGNED 127
Query: 129 -VEVVQEL 135
E++Q+L
Sbjct: 128 LAEILQKL 135
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D +PL+LA A GH++IV E+LL N D G PLHLAA G +E+ + L+
Sbjct: 44 DEYGLTPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
Query: 139 NFD 141
D
Sbjct: 103 GAD 105
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
DE LY A+ G + + L+++ + + ++ ++ TPLH++A +GHL+ + LL
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADV---NAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Query: 69 NHKPEL 74
H ++
Sbjct: 101 KHGADV 106
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+L+AN D+ G PL+LA G +E+V+ L+ D V G T LH A
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 27 SLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86
+L L Q S ++ S TS P+H +A G LD K L+ H ++ LDS P+
Sbjct: 59 ALELLKQGASPNVQDASGTS----PVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPI 113
Query: 87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
HLA EGH +V LA + D G PL LA RG
Sbjct: 114 HLAIREGHSSVVS--FLAPESDLHHRDASGLTPLELARQRG 152
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 25/128 (19%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L A+ RG V+ + L+ + ++ +L +T L + ++ P +
Sbjct: 13 RLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQV------------MMFGSPAV 58
Query: 75 AKEL----------DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA 124
A EL D+ SP+H AA G + +K L+ D + D G +P+HLA
Sbjct: 59 ALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNAL-DSTGSLPIHLAI 117
Query: 125 MRGRVEVV 132
G VV
Sbjct: 118 REGHSSVV 125
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50 TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
TP HI+ +G+L+ K+L + KP+L K + + + LHLA + + V + L+ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + D+ +IPLH AA G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 81 LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+ + PLH A E V+ELL + L DQDGRIPLH + E+ L+S
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 47 LRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
+ PLH + + + LL+ KP L + D PLH + + +I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 107 DACL--VADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF--HGDTVLH 154
+ L D G P H+A G +EVV+ L L K G T LH
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50 TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
TP HI+ +G+L+ K+L + KP+L K + + + LHLA + + V + L+ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + D+ +IPLH AA G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 81 LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+ + PLH A E V+ELL + L DQDGRIPLH + E+ L+S
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 47 LRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
+ PLH + + + LL+ KP L + D PLH + + +I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 107 DACL--VADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF--HGDTVLH 154
+ L D G P H+A G +EVV+ L L K G T LH
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 27 SLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86
+L L Q S ++ S TS P+H +A G LD K L+ H ++ LDS P+
Sbjct: 57 ALELLKQGASPNVQDASGTS----PVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPI 111
Query: 87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
HLA EGH +V LA + D G PL LA RG
Sbjct: 112 HLAIREGHSSVVS--FLAPESDLHHRDASGLTPLELARQRG 150
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 25/128 (19%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L A+ RG V+ + L+ + ++ +L +T L + ++ P +
Sbjct: 11 RLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQV------------MMFGSPAV 56
Query: 75 AKEL----------DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA 124
A EL D+ SP+H AA G + +K L+ D + D G +P+HLA
Sbjct: 57 ALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNAL-DSTGSLPIHLAI 115
Query: 125 MRGRVEVV 132
G VV
Sbjct: 116 REGHSSVV 123
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50 TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
TP HI+ +G+L+ K+L + KP+L K + + + LHLA + + V + L+ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + D+ +IPLH AA G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 81 LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+ + PLH A E V+ELL + L DQDGRIPLH + E+ L+S
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 47 LRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANK 106
+ PLH + + + LL+ KP L + D PLH + + +I LL +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 107 DACL--VADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF--HGDTVLH 154
+ L D G P H+A G +EVV+ L L K G T LH
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 45 TSLRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELL 102
+L++TPLH++ + + +ALL PEL D ++PLHLA +G + V L
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLT 95
Query: 103 LANKDACL-----VADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKFHGDTVLHFK 156
+ L + +G LHLA++ G + +V+ L+S D +A +G T LH
Sbjct: 96 QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 155
Query: 157 AE 158
+
Sbjct: 156 VD 157
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV----QE 134
++L+ +PLHLA +I + LL A D L D G PLHLA +G + V Q
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 135 LISANFDSAL--VKFHGDTVLHFKAEH 159
+ + S L ++G T LH + H
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIH 124
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 117 RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162
+ PLHLA + + E+ + L+ A D L F G+T LH E L
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL 88
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 50 TPLHISALLGHLDFTKALLN-----HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA 104
TPLH++ G L L H + K + H+ LHLA+ G++ IV+ L+
Sbjct: 77 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 136
Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG 149
D +GR LHLA ++V L+ D V + G
Sbjct: 137 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 181
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 46 SLRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLAAAEGHVQIVKELLL 103
+L++TPLH++ + + +ALL PEL D ++PLHLA +G + V L
Sbjct: 43 NLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 104 ANKDACL-----VADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKFHGDTVLHFKA 157
+ L + +G LHLA++ G + +V+ L+S D +A +G T LH
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
Query: 158 E 158
+
Sbjct: 160 D 160
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 117 RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162
+ PLHLA + + E+ + L+ A D L F G+T LH E L
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL 91
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 50 TPLHISALLGHLDFTKALLN-----HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA 104
TPLH++ G L L H + K + H+ LHLA+ G++ IV+ L+
Sbjct: 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 139
Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG 149
D +GR LHLA ++V L+ D V + G
Sbjct: 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
ET LH++A D K LL + A D++ +PLH AA Q V ++LL N+
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLH-AAVSADAQGVFQILLRNRAT 80
Query: 109 CLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
L A DG PL LAA ++++LI+++ D V G + LH+
Sbjct: 81 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHW 128
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 74 LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
L + D + LHLAA K LL A+ DA + D GR PLH A V Q
Sbjct: 14 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAX-IQDNMGRTPLHAAVSADAQGVFQ 72
Query: 134 ELI 136
L+
Sbjct: 73 ILL 75
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
D+ G LHLAA R + + L+ A+ D+ + G T LH
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLH 60
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 82 KHSPLHLAAAEGHVQIVKELL--LANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ +PL LAA EG + K LL AN+D + D R+P +A R ++V+ L
Sbjct: 155 EETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVRLL 207
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+ LH+AAA+G+ +++K L+ A D + D DG PLH AA G+ E + L+ D
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259
Query: 144 LVKFHGDTVLHFKAEHL 160
V G T E +
Sbjct: 260 AVNKVGQTAFDVADEDI 276
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+ LH A + +V +VK L+ N D +G IPLH AA G +++ + LIS
Sbjct: 75 TALHQACIDDNVDMVK-FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 144 LVKFHGDTVL 153
V GDT L
Sbjct: 134 AVNSEGDTPL 143
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 27/133 (20%)
Query: 51 PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA---------EGHVQIVK-E 100
PLH +A G+LD + L++ + ++S +PL +A E + Q V E
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 101 LLLANKDACLVAD----------------QDGRIPLHLAAMRGRVEVVQELISANFDSAL 144
++ ++ D + G LH+AA +G EV++ LI A +D +
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227
Query: 145 VKFHGDTVLHFKA 157
+ G T LH A
Sbjct: 228 KDYDGWTPLHAAA 240
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
ET LH++A D K LL + A D++ +PLH AA Q V ++L+ N+
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT 115
Query: 109 CLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
L A DG PL LAA ++++LI+++ D V G + LH+
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 74 LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
L + D + LHLAA K LL A+ DA + D GR PLH A V Q
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQ 107
Query: 134 ELI 136
LI
Sbjct: 108 ILI 110
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
D+ G LHLAA R + + L+ A+ D+ + G T LH
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 95
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 82 KHSPLHLAAAEGHVQIVKELL--LANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
+ +PL LAA EG + K LL AN+D + D R+P +A R ++V+
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVR 240
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
ET LH++A D K LL + A D++ +PLH AA Q V ++L+ N+
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT 116
Query: 109 CLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
L A DG PL LAA ++++LI+++ D V G + LH+
Sbjct: 117 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 164
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 74 LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
L + D + LHLAA K LL A+ DA + D GR PLH A V Q
Sbjct: 50 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQ 108
Query: 134 ELI 136
LI
Sbjct: 109 ILI 111
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 82 KHSPLHLAAAEGHVQIVKELL--LANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
+ +PL LAA EG + K LL AN+D + D R+P +A R ++V+ L N
Sbjct: 191 EETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVRLLDEYN 247
Query: 140 F 140
Sbjct: 248 L 248
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
D+ G LHLAA R + + L+ A+ D+ + G T LH
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 96
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 75 AKELDSLKH---SPLHLAAAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAMRGR 128
A DS K+ + LH AA + IVK L+ +NKD D+DG+ P+ LAA GR
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDK---QDEDGKTPIXLAAQEGR 325
Query: 129 VEVVQELI 136
+EVV LI
Sbjct: 326 IEVVXYLI 333
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 40 RKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVK 99
RK S T LH +A + + K L+ K + D +P+ LAA EG +++V
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVX 330
Query: 100 ELL 102
L+
Sbjct: 331 YLI 333
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
ET LH++A D K LL + A D++ +PLH AA Q V ++L+ N+
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT 83
Query: 109 CLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
L A DG PL LAA ++++LI+++ D V G + LH+
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 74 LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
L + D + LHLAA K LL A+ DA + D GR PLH A V Q
Sbjct: 17 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQ 75
Query: 134 ELI 136
LI
Sbjct: 76 ILI 78
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 82 KHSPLHLAAAEGHVQIVKELL--LANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
+ +PL LAA EG + K LL AN+D + D R+P +A R ++V+ L N
Sbjct: 158 EETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVRLLDEYN 214
Query: 140 F 140
Sbjct: 215 L 215
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
D+ G LHLAA R + + L+ A+ D+ + G T LH
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 63
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 22/155 (14%)
Query: 19 ASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKEL 78
A+ V++L+ L++ + + + ++ ET LHI+AL +L+ L+ PEL E
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRG--AMGETALHIAALYDNLEAAMVLMEAAPELVFEP 67
Query: 79 DSLK----HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRI--------------PL 120
+ + + LH+A +V +V+ LL + A + A G + PL
Sbjct: 68 MTSELYEGQTALHIAVINQNVNLVRALL--ARGASVSARATGSVFHYRPHNLIYYGEHPL 125
Query: 121 HLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
AA G E+V+ LI D G+TVLH
Sbjct: 126 SFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQD--GRIPLHLAAMRGRVEVVQELISAN-- 139
SPL LAA E VQ + +LL + C V + G LH+AA+ +E L+ A
Sbjct: 5 SPLLLAAKENDVQALSKLL--KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 140 --FDSALVK-FHGDTVLHF 155
F+ + + G T LH
Sbjct: 63 LVFEPMTSELYEGQTALHI 81
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
T LH++A D K LL + A D++ +PLH AA Q V ++L+ N+
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATD 116
Query: 110 LVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
L A DG PL LAA ++++LI+++ D V G + LH+
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 74 LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
L + D + LHLAAA K LL A+ DA + D GR PLH A V Q
Sbjct: 49 LHNQTDRTGATALHLAAAYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQ 107
Query: 134 ELI 136
LI
Sbjct: 108 ILI 110
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLH 154
D+ G LHLAA R + + L+ A+ D+ + G T LH
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLH 95
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 82 KHSPLHLAAAEGHVQIVKELL--LANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
+ +PL LAA EG + K LL AN+D + D R+P +A R ++V+
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVR 240
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 27/129 (20%)
Query: 74 LAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGR----------IPLHLA 123
+A D +PLH+A +G++ V L+ + Q GR PLHLA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVN-------LFQQGGRELDIYNNLRQTPLHLA 53
Query: 124 AMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICY 183
+ VV+ L++A + HG T H EH R P+ A LD
Sbjct: 54 VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH------RSPTCLRALLDSA----A 103
Query: 184 PKHLTIETR 192
P L +E R
Sbjct: 104 PGTLDLEAR 112
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELD---SLKHSPLHLAAAEGHVQIVKELLLAN 105
+TPLHI+ + G+L L+N + +ELD +L+ +PLHLA +V+ L+ A
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 106 KDACLVADQDGRIPLHLA 123
+ D+ G+ HLA
Sbjct: 70 ASP-MALDRHGQTAAHLA 86
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 84 SPLHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
SPL A + +V+ LL AN +A + + G LH A+ RG + +V+ L+ + D
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYS---GSSALHSASGRGLLPLVRTLVRSGAD 208
Query: 142 SALVKFHGDTVL 153
S+L H DT L
Sbjct: 209 SSLKNCHNDTPL 220
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 22 RGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81
+G+ + L+ S+ + + S+ + PLH +A G+L + + L+++ + LD
Sbjct: 51 KGTSKGRTGLIPSNYVAEQAESI----DNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKA 105
Query: 82 KHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+ L+ A GH IV+ L ++ G LH AA +G ++VQ L++
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
E E + L+EA+ RG++ L + + + L T L+ + GH D +
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEX 124
Query: 67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA 104
L + + L + LH AA +G+ IV +LLLA
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIV-QLLLA 161
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
E++EDST ++ + L LN M KT ET LH++A D K
Sbjct: 23 ENNEDSTAQVI-SDLLAQGAELNATMD-------KTG-----ETSLHLAARFARADAAKR 69
Query: 67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLAAM 125
LL+ + A D+ +PLH A A + + + +LL N+ L A DG PL LAA
Sbjct: 70 LLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQ-ILLRNRATNLNARMHDGTTPLILAAR 127
Query: 126 RGRVEVVQELISANFDSALVKFHGDTVLHFKA 157
+V++LI+A+ D G T LH+ A
Sbjct: 128 LAIEGMVEDLITADADINAADNSGKTALHWAA 159
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL--LANK 106
+T LH +A + + + LL H + D +PL LAA EG + K LL AN+
Sbjct: 152 KTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNFANR 210
Query: 107 DACLVADQDGRIPLHLAAMRGRVEVVQ 133
+ + D R+P +A+ R ++V+
Sbjct: 211 E---ITDHMDRLPRDVASERLHHDIVR 234
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKF 147
+L+AN D+DG PLHLAA G +E+V+ L+ A D +A KF
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 55 SALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
+A G D + L+ + ++ AK+ D ++PLHLAA EGH++IV+ LL A D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKF 147
+L+AN D++G PLHLAA G +EVV+ L+ A D +A KF
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
+A G D + L+ + ++A + D +PLHLAA GH+++VK LL A D
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
D KL EA+ G + LM + + + K S TPLH++A GHL+ K LL
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS---TPLHLAARNGHLEVVKLLL 59
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
+L+AN D++G PLHLAA G +EVV+ L+ A D
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 36 SLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHV 95
L+ R + + S L +A G D + L+ + ++A + D +PLHLAA GH+
Sbjct: 12 GLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHL 70
Query: 96 QIVKELLLANKD 107
++VK LL A D
Sbjct: 71 EVVKLLLEAGAD 82
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 86 LHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
LH A GH +IVK L+ N +A AD DG PLH AA V+V + L+ +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNA---ADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 81 LKHSPLHLA-----AAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+K +PL LA + EG +V+ ++ D L D+ G LH A G E+V+ L
Sbjct: 31 VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFL 89
Query: 136 ISANFDSALVKFHGDTVLHFKA 157
+ + G T LH A
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAA 111
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL 102
T LH + GH + K L+ + DS +PLH AA+ +VQ+ K L+
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 86 LHLAAAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
LH A GH +IVK L+ N +A AD DG PLH AA V+V + L+ +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNA---ADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELL 102
T LH + GH + K L+ + DS +PLH AA+ +VQ+ K L+
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 81 LKHSPLHL---AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+K +PL L ++ EG +V+ ++ D L D+ G LH A G E+V+ L+
Sbjct: 33 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQ 91
Query: 138 ANFDSALVKFHGDTVLHFKA 157
+ G T LH A
Sbjct: 92 FGVNVNAADSDGWTPLHCAA 111
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA-----AEGHVQIVKELL-L 103
T LH S + + LL+ + + +SP+ L A + ++ V +L L
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159
N +A A Q G+ L LA GRV+VV+ L++ D + G T L EH
Sbjct: 173 GNINA--KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEH 226
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDA 108
+T L ++ G +D KALL + ++ + D + L A GH +I LL
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDD-GSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+ D+DG L +A G+ E+ L S
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASMLYS 271
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 71 KPELAKEL----------DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D ++ +H AA G + ++ LL D + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELI 136
HLAA G + VV+ L+
Sbjct: 108 HLAAKEGHLRVVEFLV 123
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 71 KPELAKEL----------DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D + +H AA G + + + LL N+ + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLENQADVNIEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELI 136
HLAA G + VV+ L+
Sbjct: 108 HLAAKEGHLRVVEFLV 123
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 71 KPELAKEL----------DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D + +H AA G + ++ LL D + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN-IEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELI 136
HLAA G + VV+ L+
Sbjct: 108 HLAAKEGHLRVVEFLV 123
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 71 KPELAKEL----------DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D + +H AA G + ++ LL D + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELI 136
HLAA G + VV+ L+
Sbjct: 108 HLAAKEGHLRVVEFLV 123
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 71 KPELAKEL----------DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D + +H AA G + ++ LL D + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELI 136
HLAA G + VV+ L+
Sbjct: 108 HLAAKEGHLRVVEFLV 123
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQ--SDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
DE+ L A+ G + + L+Q +D +L K RE+ L ++ G+ D K
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-----RESALSLACSKGYTDIVKM 103
Query: 67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126
LL+ ++ E D +PL A HV+ VK LL + D + D G + LA
Sbjct: 104 LLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVAL 161
Query: 127 GRVEVVQ 133
G V Q
Sbjct: 162 GYRSVQQ 168
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGR-IPLHLAAMRGRVEVVQELIS 137
D +PL AAA G + +V+ LL D L+ GR L LA +G ++V+ L+
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG--KGRESALSLACSKGYTDIVKMLLD 106
Query: 138 ANFDSALVKFHGDTVLHF 155
D ++G T L +
Sbjct: 107 CGVDVNEYDWNGGTPLLY 124
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQ--SDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
DE+ L A+ G + + L+Q +D +L K RE+ L ++ G+ D K
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-----RESALSLACSKGYTDIVKM 85
Query: 67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126
LL+ ++ E D +PL A HV+ VK LL + D + D G + LA
Sbjct: 86 LLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS-GYNSMDLAVAL 143
Query: 127 GRVEVVQ 133
G V Q
Sbjct: 144 GYRSVQQ 150
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGR-IPLHLAAMRGRVEVVQELIS 137
D +PL AAA G + +V+ LL D L+ GR L LA +G ++V+ L+
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG--KGRESALSLACSKGYTDIVKMLLD 88
Query: 138 ANFDSALVKFHGDTVLHF 155
D ++G T L +
Sbjct: 89 CGVDVNEYDWNGGTPLLY 106
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQ--SDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
DE+ L A+ G + + L+Q +D +L K RE+ L ++ G+ D K
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG-----RESALSLACSKGYTDIVKM 87
Query: 67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126
LL+ ++ E D +PL A HV+ VK LL + D + D G + LA
Sbjct: 88 LLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVAL 145
Query: 127 GRVEVVQ 133
G V Q
Sbjct: 146 GYRSVQQ 152
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGR-IPLHLAAMRGRVEVVQELIS 137
D +PL AAA G + +V+ LL D L+ GR L LA +G ++V+ L+
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG--KGRESALSLACSKGYTDIVKMLLD 90
Query: 138 ANFDSALVKFHGDTVLHF 155
D ++G T L +
Sbjct: 91 CGVDVNEYDWNGGTPLLY 108
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
H+PLH+A ++V+ L A D GR PLHLA V++ L+ A D
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 143 ALVKFHGDTVL 153
+ G T L
Sbjct: 219 TARMYGGRTPL 229
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
TPLH++ + + + L + +L K + +PLHL A E V ELLL
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL-AVEAQAASVLELLLKAGADP 218
Query: 110 LVADQDGRIPLHLAAMR 126
GR PL A +R
Sbjct: 219 TARMYGGRTPLGSALLR 235
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 44 LTSLRETPLHISALLGHLDFTKALLNHKP--ELAKELDSLKHSPLHLAAAEGHVQIVKEL 101
+T +T LH++ + H F LL E + L + LHLAA G V++L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 102 LLANKDACLVADQDGRIPLHLA 123
A LVA++ G LHLA
Sbjct: 65 YAAGA-GVLVAERGGHTALHLA 85
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 116 GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
G+ LHLAA+ G V++L +A + + G T LH
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
H+PLH+A ++V+ L A D GR PLHLA V++ L+ A D
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 143 ALVKFHGDTVL 153
+ G T L
Sbjct: 219 TARMYGGRTPL 229
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDAC 109
TPLH++ + + + L + +L K + +PLHL A E V ELLL
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL-AVEAQAASVLELLLKAGADP 218
Query: 110 LVADQDGRIPLHLAAMR 126
GR PL A +R
Sbjct: 219 TARMYGGRTPLGSALLR 235
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 44 LTSLRETPLHISALLGHLDFTKALLNHKP--ELAKELDSLKHSPLHLAAAEGHVQIVKEL 101
+T +T LH++ + H F LL E + L + LHLAA G V++L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 102 LLANKDACLVADQDGRIPLHLA 123
A LVA++ G LHLA
Sbjct: 65 YAAGA-GVLVAERGGHTALHLA 85
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 116 GRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHF 155
G+ LHLAA+ G V++L +A + + G T LH
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQ--SDSLILRKTSLTSLRETPLHISALLGHLDFTKA 66
DE L AS G + ++ L++ +D IL K RE+ L +++ G+ D
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE-----RESALSLASTGGYTDIVGL 87
Query: 67 LLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126
LL ++ D +PL A HV+ V+ LL D AD G P+ LA
Sbjct: 88 LLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADS-GYTPMDLAVAL 145
Query: 127 GRVEVVQ 133
G +V Q
Sbjct: 146 GYRKVQQ 152
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L A+ RG V+ + L+ + ++ +L +T L + + G LL
Sbjct: 5 RLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP 61
Query: 75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV 132
+ D+ SP+H AA G + +K L+ D V D G +P+HLA G VV
Sbjct: 62 NVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVV 117
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 15 KLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L A+ RG V+ + L+ + ++ +L +T L + + G LL
Sbjct: 11 RLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP 67
Query: 75 AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV 132
+ D+ SP+H AA G + +K L+ D V D G +P+HLA G VV
Sbjct: 68 NVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVV 123
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFH-GDTVLHFKAEHLS 161
++ L DQDG+I L L ++ + V +L+ AN ++LV GD VL E+ +
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNGIFV--QLVQANSPASLVGLRFGDQVLQINGENCA 60
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFH-GDTVLHFKAEHLS 161
++ L DQDG+I L L ++ + V +L+ AN ++LV GD VL E+ +
Sbjct: 6 REVILCKDQDGKIGLRLKSIDNGIFV--QLVQANSPASLVGLRFGDQVLQINGENCA 60
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
HS + A A+ +V++V LL A L+ ++ PLH AA ++V+ L+ + D
Sbjct: 32 HSASYYAIADNNVRLVCTLLNAGALKNLLENE---FPLHQAATLEDTKIVKILLFSGLDD 88
Query: 143 ALVKFHGDTVLHFKAEHLSLCTQRL 167
+ G+T L++ + + T +L
Sbjct: 89 SQFDDKGNTALYYAVDSGNXQTVKL 113
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELA-KELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107
+TPL S + G+ + + LL H + + L+ +PL +A+ G +IVK+LL D
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG--ETPLIVASKYGRSEIVKKLLELGAD 159
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQ 133
D G A + GR EV++
Sbjct: 160 IS-ARDLTGLTAEASARIFGRQEVIK 184
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 59 GHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRI 118
G LD K + ++ + L+ + PLH AA G ++I++ LLL D D+
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGR-KPLHYAADCGQLEILEFLLLKGADIN-APDKHHIT 70
Query: 119 PLHLAAMRGRVEVVQELISANFDSALVKFHGDTVL 153
PL A G V V+ L+S D + G T L
Sbjct: 71 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLH A IV ELLL + ++ ++G P LAA+ G V++++ +S D
Sbjct: 61 TPLHNAVQMSREDIV-ELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN 119
Query: 144 LVKFHGDTVL 153
F+G T
Sbjct: 120 ECDFYGFTAF 129
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 22 RGSVRSLNTLMQSDSLILRKTSLTSLR--ETPLHISALLGHLDFTKALLNHKPELAKELD 79
+G+ R+ NTL++ I +T +TS + T ++I GH+DF E+ + L
Sbjct: 37 KGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA-------EVYRSLS 89
Query: 80 SLKHSPLHLAAAEG 93
L + L ++A +G
Sbjct: 90 VLDGAILLISAKDG 103
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 59 GHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRI 118
G LD K + ++ + L+ + PLH AA G ++I++ LLL D D+
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGR-KPLHYAADCGQLEILEFLLLKGADIN-APDKHHIT 75
Query: 119 PLHLAAMRGRVEVVQELISANFDSAL 144
PL A G V V+ L+S D +
Sbjct: 76 PLLSAVYEGHVSCVKLLLSKGADKTV 101
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
Query: 49 ETPLHISALLGHLDFTKALLN--HKPELAKELDSLKHSPLH--LAAAEGH-------VQI 97
E PL ++A D LL H+P + DSL ++ LH + A+ + +
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196
Query: 98 VKELLLANKDACL------VADQDGRIPLHLAAMRGRVEVVQELISANF 140
LL C +++ G PL LAA G++E+ + ++ F
Sbjct: 197 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSA 143
+PLH A IV ELLL + ++ ++G P LAA+ G V++++ +S D
Sbjct: 41 TPLHNAVQMSREDIV-ELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
Query: 144 LVKFHGDTVL 153
F+G T
Sbjct: 100 ECDFYGFTAF 109
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
Query: 49 ETPLHISALLGHLDFTKALLN--HKPELAKELDSLKHSPLH--LAAAEGH-------VQI 97
E PL ++A D LL H+P + DSL ++ LH + A+ + +
Sbjct: 150 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 209
Query: 98 VKELLLANKDACL------VADQDGRIPLHLAAMRGRVEVVQELISANF 140
LL C +++ G PL LAA G++E+ + ++ F
Sbjct: 210 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 258
>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin
pdb|1J1J|B Chain B, Crystal Structure Of Human Translin
pdb|1J1J|C Chain C, Crystal Structure Of Human Translin
pdb|1J1J|D Chain D, Crystal Structure Of Human Translin
Length = 240
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 51 PLHISALLGHLDFTKALLNHKPE-LAKELDSLKH 83
PLHIS + LD LLN K + L K D LK+
Sbjct: 179 PLHISTFINELDSGFRLLNLKNDSLRKRYDGLKY 212
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 84 SPLHLAAAEGHVQIVKELL--LANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
+PL LAA EG + K LL AN+D + D R+P +A R ++V+
Sbjct: 83 TPLFLAAREGSYETAKVLLDHFANRD---ITDHMDRLPRDIAQERMHHDIVR 131
>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|B Chain B, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|C Chain C, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|D Chain D, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
Length = 235
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 51 PLHISALLGHLDFTKALLNHKPE-LAKELDSLKH 83
PLHIS + LD LLN K + L K D LK+
Sbjct: 174 PLHISTFINELDSGFRLLNLKNDSLRKRYDGLKY 207
>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex
pdb|3PJA|B Chain B, Crystal Structure Of Human C3po Complex
pdb|3PJA|C Chain C, Crystal Structure Of Human C3po Complex
pdb|3PJA|D Chain D, Crystal Structure Of Human C3po Complex
pdb|3PJA|E Chain E, Crystal Structure Of Human C3po Complex
pdb|3PJA|F Chain F, Crystal Structure Of Human C3po Complex
pdb|3PJA|G Chain G, Crystal Structure Of Human C3po Complex
pdb|3PJA|H Chain H, Crystal Structure Of Human C3po Complex
pdb|3PJA|I Chain I, Crystal Structure Of Human C3po Complex
pdb|3QB5|A Chain A, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|B Chain B, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|C Chain C, Human C3po Complex In The Presence Of Mnso4
Length = 228
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 51 PLHISALLGHLDFTKALLNHKPE-LAKELDSLKH 83
PLHIS + LD LLN K + L K D LK+
Sbjct: 167 PLHISTFINELDSGFRLLNLKNDSLRKRYDGLKY 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,028,137
Number of Sequences: 62578
Number of extensions: 258814
Number of successful extensions: 1216
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 302
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)