Query 025876
Match_columns 247
No_of_seqs 163 out of 3504
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 19:35:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oy3_D Transcription factor in 100.0 5.7E-38 1.9E-42 249.2 13.6 214 5-219 2-263 (282)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 3.9E-38 1.3E-42 247.0 11.8 222 3-227 1-245 (253)
3 3d9h_A CDNA FLJ77766, highly s 100.0 5.8E-37 2E-41 244.5 16.4 196 4-205 51-246 (285)
4 2xai_A ASB-9, ankyrin repeat a 100.0 5.1E-37 1.7E-41 241.8 15.4 187 11-203 2-188 (261)
5 3b7b_A Euchromatic histone-lys 100.0 1.1E-36 3.7E-41 236.2 17.0 198 3-204 2-200 (237)
6 4gpm_A Engineered protein OR26 100.0 2.4E-36 8.2E-41 222.4 16.4 158 14-176 6-163 (169)
7 2f8y_A Notch homolog 1, transl 100.0 3.3E-36 1.1E-40 231.4 17.4 194 8-205 21-215 (223)
8 1k1a_A B-cell lymphoma 3-encod 100.0 2.6E-36 8.9E-41 234.4 16.9 215 6-225 3-236 (241)
9 2rfa_A Transient receptor pote 100.0 2.1E-36 7.1E-41 234.0 14.6 193 11-207 2-223 (232)
10 1yyh_A HN1;, notch 1, ankyrin 100.0 2.8E-36 9.6E-41 236.4 15.2 193 7-203 52-245 (253)
11 3aji_A 26S proteasome non-ATPa 100.0 2.9E-36 9.9E-41 232.9 14.1 186 11-200 5-191 (231)
12 3utm_A Tankyrase-1; tankyrase, 100.0 8.3E-36 2.8E-40 243.6 16.1 199 3-206 49-305 (351)
13 1k1a_A B-cell lymphoma 3-encod 100.0 9.2E-36 3.1E-40 231.4 15.3 196 3-203 37-238 (241)
14 3kea_A K1L; tropism, ANK repea 100.0 1.9E-36 6.7E-41 241.4 11.3 199 3-209 22-223 (285)
15 3ljn_A Hypothetical protein; a 100.0 4.2E-36 1.4E-40 247.3 13.4 197 3-203 11-266 (364)
16 1n11_A Ankyrin; clathrin, BAND 100.0 1.9E-35 6.6E-40 248.8 16.8 220 3-227 5-234 (437)
17 3b7b_A Euchromatic histone-lys 100.0 2.5E-35 8.4E-40 228.6 15.7 190 3-196 35-225 (237)
18 1oy3_D Transcription factor in 100.0 3E-35 1E-39 233.5 16.0 184 5-192 38-269 (282)
19 1ikn_D Protein (I-kappa-B-alph 100.0 1.6E-36 5.4E-41 235.3 7.6 201 6-207 2-210 (236)
20 2xai_A ASB-9, ankyrin repeat a 100.0 5E-35 1.7E-39 230.4 15.9 194 3-205 27-221 (261)
21 3hra_A Ankyrin repeat family p 100.0 8.5E-35 2.9E-39 220.0 16.4 191 9-203 2-200 (201)
22 2dzn_A Probable 26S proteasome 100.0 5.8E-35 2E-39 225.1 15.3 187 12-201 2-194 (228)
23 4b93_B Ankyrin repeat domain-c 100.0 9.8E-36 3.4E-40 235.3 10.5 184 5-193 45-230 (269)
24 2dzn_A Probable 26S proteasome 100.0 1.9E-34 6.5E-39 222.2 17.2 183 6-190 30-217 (228)
25 1wdy_A 2-5A-dependent ribonucl 100.0 3E-34 1E-38 227.7 18.1 188 9-201 36-239 (285)
26 1n11_A Ankyrin; clathrin, BAND 100.0 2.6E-34 8.9E-39 241.9 18.3 220 3-227 38-267 (437)
27 3d9h_A CDNA FLJ77766, highly s 100.0 1.1E-34 3.7E-39 231.3 14.9 180 3-189 83-263 (285)
28 3aji_A 26S proteasome non-ATPa 100.0 1.6E-34 5.5E-39 223.1 15.2 191 5-200 33-224 (231)
29 2etb_A Transient receptor pote 100.0 2.1E-35 7.2E-40 231.7 9.8 196 11-207 1-247 (256)
30 2pnn_A Transient receptor pote 100.0 2E-35 7E-40 234.0 8.8 205 4-209 5-261 (273)
31 2fo1_E LIN-12 protein; beta-ba 100.0 1.9E-34 6.4E-39 238.3 14.5 198 3-204 157-369 (373)
32 1wdy_A 2-5A-dependent ribonucl 100.0 6.9E-34 2.3E-38 225.6 16.7 200 3-207 63-279 (285)
33 4b93_B Ankyrin repeat domain-c 100.0 8.1E-35 2.8E-39 230.0 11.1 209 6-216 5-229 (269)
34 2rfm_A Putative ankyrin repeat 100.0 3.3E-34 1.1E-38 215.5 13.6 164 4-172 27-190 (192)
35 3eu9_A Huntingtin-interacting 100.0 2.2E-33 7.6E-38 217.4 17.4 218 5-226 2-231 (240)
36 2fo1_E LIN-12 protein; beta-ba 100.0 1.7E-34 5.8E-39 238.6 11.5 220 3-227 115-368 (373)
37 3jxi_A Vanilloid receptor-rela 100.0 1.7E-34 5.7E-39 227.0 8.3 199 9-208 2-252 (260)
38 3v30_A DNA-binding protein rfx 100.0 3.6E-33 1.2E-37 206.2 14.8 169 12-184 2-171 (172)
39 3hra_A Ankyrin repeat family p 100.0 6E-33 2.1E-37 209.8 16.3 166 3-172 30-201 (201)
40 3v31_A Ankyrin repeat family A 100.0 4.5E-33 1.5E-37 204.7 14.9 160 11-175 2-161 (167)
41 2y1l_E Darpin-8.4; hydrolase-i 100.0 8.9E-33 3E-37 203.6 16.0 159 9-172 11-169 (169)
42 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-32 3.9E-37 224.5 18.1 223 4-227 50-323 (337)
43 1s70_B 130 kDa myosin-binding 100.0 9.9E-34 3.4E-38 226.8 11.6 123 9-136 37-159 (299)
44 3eu9_A Huntingtin-interacting 100.0 3.9E-33 1.3E-37 216.1 14.6 199 3-205 33-234 (240)
45 2f8y_A Notch homolog 1, transl 100.0 1.3E-32 4.5E-37 211.3 17.4 172 3-178 49-220 (223)
46 2rfa_A Transient receptor pote 100.0 1.1E-32 3.7E-37 213.1 16.7 171 3-175 28-223 (232)
47 1s70_B 130 kDa myosin-binding 100.0 1.2E-33 4E-38 226.4 11.4 184 3-190 64-274 (299)
48 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-33 6.1E-38 218.1 11.8 183 4-190 37-228 (236)
49 3ljn_A Hypothetical protein; a 100.0 8.9E-34 3E-38 233.4 10.0 199 3-203 44-311 (364)
50 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.1E-32 3.7E-37 201.5 13.5 158 10-173 3-161 (162)
51 3utm_A Tankyrase-1; tankyrase, 100.0 2.8E-32 9.5E-37 222.6 17.3 182 3-189 82-321 (351)
52 4gpm_A Engineered protein OR26 100.0 1E-32 3.4E-37 203.1 12.5 156 50-207 6-162 (169)
53 1awc_B Protein (GA binding pro 100.0 4E-32 1.4E-36 196.8 15.2 151 12-168 2-152 (153)
54 2etb_A Transient receptor pote 100.0 3.3E-33 1.1E-37 219.2 10.1 171 3-175 30-247 (256)
55 3twr_A Tankyrase-2; ankyrin re 100.0 1.5E-32 5E-37 201.5 12.0 161 8-173 4-164 (165)
56 4g8k_A 2-5A-dependent ribonucl 100.0 5.5E-32 1.9E-36 220.4 15.6 201 3-209 116-329 (337)
57 4hbd_A KN motif and ankyrin re 100.0 3.6E-32 1.2E-36 215.7 12.6 192 12-205 76-274 (276)
58 2vge_A RELA-associated inhibit 100.0 6.2E-33 2.1E-37 214.2 6.1 187 6-199 15-206 (229)
59 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.4E-31 8E-36 193.3 14.0 153 12-171 2-155 (156)
60 4hbd_A KN motif and ankyrin re 100.0 1.4E-32 4.9E-37 218.0 8.1 165 4-173 103-274 (276)
61 1sw6_A Regulatory protein SWI6 100.0 3.3E-32 1.1E-36 221.0 10.4 176 3-191 121-326 (327)
62 3jxi_A Vanilloid receptor-rela 100.0 3.4E-32 1.2E-36 213.8 10.1 167 9-177 43-253 (260)
63 3kea_A K1L; tropism, ANK repea 100.0 1.4E-32 4.7E-37 219.1 7.2 164 9-178 59-224 (285)
64 2pnn_A Transient receptor pote 100.0 1E-31 3.6E-36 212.6 12.1 166 7-174 49-258 (273)
65 3f6q_A Integrin-linked protein 100.0 1.8E-31 6.1E-36 198.4 11.7 164 10-177 3-166 (179)
66 1ycs_B 53BP2, P53BP2; ankyrin 100.0 9.5E-32 3.3E-36 209.0 9.2 179 9-193 2-193 (239)
67 2rfm_A Putative ankyrin repeat 100.0 1.2E-30 4E-35 196.1 9.6 159 42-202 29-188 (192)
68 1bi7_B P16INK4A, MTS1, multipl 100.0 4.2E-30 1.4E-34 186.8 10.6 150 1-156 1-151 (156)
69 1ihb_A P18-INK4C(INK6), cyclin 100.0 4E-30 1.4E-34 187.9 9.3 154 48-204 5-160 (162)
70 3v31_A Ankyrin repeat family A 100.0 1.2E-29 4E-34 186.4 11.6 152 48-201 3-155 (167)
71 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.8E-29 6E-34 185.9 11.4 156 46-203 12-168 (169)
72 1d9s_A Cyclin-dependent kinase 100.0 3.2E-29 1.1E-33 178.0 12.1 133 3-141 3-136 (136)
73 3v30_A DNA-binding protein rfx 100.0 1.2E-28 4.2E-33 181.8 13.5 143 5-152 29-171 (172)
74 3twr_A Tankyrase-2; ankyrin re 100.0 2.5E-29 8.6E-34 184.2 9.0 157 45-203 5-162 (165)
75 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5E-29 1.7E-33 180.9 10.1 152 48-202 2-154 (156)
76 1sw6_A Regulatory protein SWI6 100.0 1.1E-29 3.8E-34 206.2 6.8 182 14-206 99-308 (327)
77 1awc_B Protein (GA binding pro 100.0 6.8E-29 2.3E-33 179.8 10.3 149 48-199 2-151 (153)
78 2vge_A RELA-associated inhibit 100.0 4E-30 1.4E-34 198.5 3.8 197 28-226 1-209 (229)
79 3t8k_A Uncharacterized protein 100.0 3.6E-29 1.2E-33 186.9 7.6 157 12-174 6-179 (186)
80 3f6q_A Integrin-linked protein 100.0 1.3E-28 4.6E-33 182.8 10.5 156 48-204 5-161 (179)
81 1d9s_A Cyclin-dependent kinase 100.0 2E-28 6.9E-33 173.8 9.7 129 42-173 6-135 (136)
82 1n0r_A 4ANK, 4 ankyrin repeats 99.9 7.3E-27 2.5E-31 163.1 15.1 126 11-141 1-126 (126)
83 2jab_A H10-2-G3; HER2, darpin, 99.9 5E-27 1.7E-31 166.6 14.1 126 9-139 11-136 (136)
84 2aja_A Ankyrin repeat family p 99.9 9.5E-30 3.3E-34 209.3 -1.5 158 8-174 88-250 (376)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 9.6E-28 3.3E-32 174.3 8.9 142 44-188 8-151 (156)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 3.2E-27 1.1E-31 167.6 10.2 125 46-172 12-136 (136)
87 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.6E-28 2.6E-32 186.9 7.6 172 10-188 35-225 (239)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-26 4.2E-31 161.9 12.0 124 48-173 2-125 (126)
89 3c5r_A BARD-1, BRCA1-associate 99.9 6.8E-27 2.3E-31 166.1 8.1 123 46-170 8-130 (137)
90 3c5r_A BARD-1, BRCA1-associate 99.9 7.5E-27 2.6E-31 165.9 7.8 130 4-139 3-132 (137)
91 2b0o_E UPLC1; arfgap, structur 99.9 6.5E-26 2.2E-30 181.7 11.8 139 48-193 151-298 (301)
92 3deo_A Signal recognition part 99.9 3E-26 1E-30 170.8 8.7 137 10-169 42-179 (183)
93 3ui2_A Signal recognition part 99.9 3.4E-26 1.2E-30 178.1 7.9 139 10-171 43-182 (244)
94 3ehr_A Osteoclast-stimulating 99.9 4.2E-26 1.4E-30 175.0 8.3 124 48-173 73-197 (222)
95 3aaa_C Myotrophin, protein V-1 99.9 1.1E-25 3.6E-30 156.9 8.9 107 48-156 7-113 (123)
96 3deo_A Signal recognition part 99.9 1E-25 3.5E-30 167.8 8.9 137 45-200 41-178 (183)
97 3aaa_C Myotrophin, protein V-1 99.9 3.7E-25 1.2E-29 154.2 10.6 118 9-131 4-121 (123)
98 3t8k_A Uncharacterized protein 99.9 4.6E-26 1.6E-30 170.1 6.3 136 4-144 29-182 (186)
99 3ui2_A Signal recognition part 99.9 1.6E-25 5.3E-30 174.4 8.8 164 13-201 16-180 (244)
100 2b0o_E UPLC1; arfgap, structur 99.9 3.9E-25 1.3E-29 177.2 11.3 144 11-162 150-299 (301)
101 3ehr_A Osteoclast-stimulating 99.9 2.9E-25 9.8E-30 170.4 7.9 138 7-149 68-206 (222)
102 2aja_A Ankyrin repeat family p 99.9 5.7E-27 1.9E-31 192.8 -2.6 176 12-204 65-248 (376)
103 3lvq_E ARF-GAP with SH3 domain 99.9 2.5E-23 8.6E-28 177.7 15.6 133 12-146 132-270 (497)
104 1dcq_A PYK2-associated protein 99.9 7.9E-24 2.7E-28 167.7 10.7 166 8-174 62-263 (278)
105 3jue_A Arfgap with coiled-coil 99.9 3E-23 1E-27 170.0 13.9 144 10-158 197-346 (368)
106 1dcq_A PYK2-associated protein 99.9 1.7E-22 5.9E-27 160.1 15.0 128 12-141 130-263 (278)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.5E-22 5.1E-27 133.9 11.6 91 48-140 2-92 (93)
108 3lvq_E ARF-GAP with SH3 domain 99.9 4.3E-23 1.5E-27 176.3 10.7 135 48-189 132-275 (497)
109 2l6b_A NR1C; ankyrin, consensu 99.9 7.4E-23 2.5E-27 140.7 8.9 108 44-153 5-112 (115)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.5E-22 1.5E-26 131.5 11.2 93 11-107 1-93 (93)
111 3jue_A Arfgap with coiled-coil 99.9 1.6E-22 5.6E-27 165.7 10.7 140 48-189 199-345 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.9 4.4E-22 1.5E-26 136.8 9.6 109 7-120 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2.7E-19 9.3E-24 121.9 9.3 90 44-135 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 5E-19 1.7E-23 120.5 10.3 93 5-101 17-109 (110)
115 1gp8_A Protein (scaffolding pr 55.1 11 0.00036 19.3 2.3 17 86-102 17-33 (40)
116 3zrh_A Ubiquitin thioesterase 55.0 36 0.0012 27.8 6.5 54 17-70 27-91 (454)
117 3mkq_B Coatomer subunit alpha; 53.1 59 0.002 23.1 8.8 55 12-73 8-62 (177)
118 3zrh_A Ubiquitin thioesterase 29.9 1.4E+02 0.0049 24.5 6.3 51 54-104 28-91 (454)
119 3gvo_A Pumilio 2, pumilio homo 24.4 76 0.0026 25.1 4.0 26 44-69 69-94 (351)
120 3gvo_A Pumilio 2, pumilio homo 21.1 1.6E+02 0.0053 23.2 5.2 153 8-162 105-266 (351)
No 1
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.7e-38 Score=249.23 Aligned_cols=214 Identities=19% Similarity=0.109 Sum_probs=181.2
Q ss_pred ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (247)
Q Consensus 5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t 84 (247)
.+..|..|.||||+|+..|+.+++++|++.++.....+..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 3678999999999999999999999999988874334667788999999999999999999999999998 888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCcc----------------------------------------------ccccCCCCCc
Q 025876 85 PLHLAAAEGHVQIVKELLLANKDA----------------------------------------------CLVADQDGRI 118 (247)
Q Consensus 85 ~l~~A~~~g~~~~~~~Ll~~~~~~----------------------------------------------~~~~~~~g~t 118 (247)
|||+|+..|+.+++++|+..++.. .+..+..|+|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999999887541 2466889999
Q ss_pred HHHHHHhcCcHHHHHHHHHcCCCcccccc-CCCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHhhcccce
Q 025876 119 PLHLAAMRGRVEVVQELISANFDSALVKF-HGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVA 196 (247)
Q Consensus 119 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~ 196 (247)
|||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.++. ...+..|.||||+|+..+....
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHH
Confidence 99999999999999999999999999975 499999999999999999999887764 4556689999999999888888
Q ss_pred eeccccCCChhhhHHhhhhhhhh
Q 025876 197 ILMMPSVGGITFFQESFAERSLI 219 (247)
Q Consensus 197 ~~~l~~~~~~~~~~~~~~~~~~~ 219 (247)
+..|++.+............++.
T Consensus 241 v~~Ll~~ga~~~~~~~~g~tpl~ 263 (282)
T 1oy3_D 241 ARLLRAHGAPEPEDGGDKLSPCS 263 (282)
T ss_dssp HHHHHHTTCCCCCCC--------
T ss_pred HHHHHHcCCCcCcCCCccccccc
Confidence 88877776665544444444444
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.9e-38 Score=247.00 Aligned_cols=222 Identities=18% Similarity=0.111 Sum_probs=156.4
Q ss_pred CCccccCCCCchHHHHHHHcC-------------CHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHh
Q 025876 3 IGAREHDEDSTHKLYEASLRG-------------SVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g-------------~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~ 69 (247)
+|+|.+|..|.||||+|+..| +.+++++|++.++++.. ..|..|.||||+|+..|+.+++++|++
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 78 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN--QTDRTGETALHLAARYSRSDAAKRLLE 78 (253)
T ss_dssp -----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 578899999999999999987 89999999999987643 235679999999999999999999999
Q ss_pred cCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCC
Q 025876 70 HKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG 149 (247)
Q Consensus 70 ~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g 149 (247)
.|+++ +..+..|.||||+|+..|+.+++++|++.++...+..+..|+||||+|+..|+.+++++|++.|++++..+..|
T Consensus 79 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 157 (253)
T 1yyh_A 79 ASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157 (253)
T ss_dssp TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred cCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence 99998 88899999999999999999999999999884447889999999999999999999999999999999999999
Q ss_pred CcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccC---------CChhhhHHhhhhhhhh
Q 025876 150 DTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV---------GGITFFQESFAERSLI 219 (247)
Q Consensus 150 ~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~ 219 (247)
.||||+|+..|+.+++++|++.+... ..+..|.||||+|+..+....+..|++. .|.+++..+...+...
T Consensus 158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~ 237 (253)
T 1yyh_A 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 237 (253)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHH
Confidence 99999999999999999888877644 4556899999999988887777665543 4566667777766666
Q ss_pred hhccccCC
Q 025876 220 VVTEEVDY 227 (247)
Q Consensus 220 ~~~~~~~~ 227 (247)
++..+...
T Consensus 238 i~~~l~~~ 245 (253)
T 1yyh_A 238 IVRLLDLE 245 (253)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 66554443
No 3
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.8e-37 Score=244.46 Aligned_cols=196 Identities=24% Similarity=0.241 Sum_probs=179.4
Q ss_pred CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876 4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH 83 (247)
Q Consensus 4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~ 83 (247)
..+.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.
T Consensus 51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~ 126 (285)
T 3d9h_A 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWH 126 (285)
T ss_dssp TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS---CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCC
T ss_pred cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCC
Confidence 45678899999999999999999999999999876 556778999999999999999999999999998 88899999
Q ss_pred cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC 163 (247)
Q Consensus 84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~ 163 (247)
||||+|+..|+.+++++|++.++++ + .+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~ 204 (285)
T 3d9h_A 127 TPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHH
T ss_pred CHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 9999999999999999999999988 3 3456999999999999999999999999999999999999999999999999
Q ss_pred eeeccccccccccccCCccchhhHHHhhcccceeeccccCCC
Q 025876 164 TQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGG 205 (247)
Q Consensus 164 ~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 205 (247)
++++|++.+.....+..|.||||+|+..+....+..|++.+.
T Consensus 205 ~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 246 (285)
T 3d9h_A 205 CVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246 (285)
T ss_dssp HHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 999999988877778899999999999888777777665543
No 4
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=241.77 Aligned_cols=187 Identities=25% Similarity=0.245 Sum_probs=130.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA 90 (247)
Q Consensus 11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 90 (247)
+|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence 4667777777777777777777776655 445566777777777777777777777777766 666777777777777
Q ss_pred hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN 170 (247)
Q Consensus 91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~ 170 (247)
..|+.+++++|++.++++ + .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HHTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 777777777777777666 2 34457777777777777777777777777777777777777777777777777777777
Q ss_pred ccccccccCCccchhhHHHhhcccceeeccccC
Q 025876 171 YAAWLDWTLSICYPKHLTIETRGAVAILMMPSV 203 (247)
Q Consensus 171 ~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 203 (247)
.+.....+..|.||||+|+..+....+..|++.
T Consensus 156 ~g~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~ 188 (261)
T 2xai_A 156 SGADVNQGKGQDSPLHAVARTASEELACLLMDF 188 (261)
T ss_dssp HTCCTTCCBTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred cCCCCCCCCCCCChHHHHHHcCCHHHHHHHHHc
Confidence 666655566677777777766666555554433
No 5
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.1e-36 Score=236.21 Aligned_cols=198 Identities=21% Similarity=0.218 Sum_probs=179.1
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
++.+.+|..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 77 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEG 77 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTS
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCC
Confidence 678899999999999999999999999999999877 556677999999999999999999999999987 7889999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
.||||+|+..|+.+++++|++.+....+..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus 78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 99999999999999999999998444478899999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCC
Q 025876 163 CTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVG 204 (247)
Q Consensus 163 ~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 204 (247)
+++++|++.+... ..+..|.||+|+|+..+....+..|++.+
T Consensus 158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 200 (237)
T 3b7b_A 158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200 (237)
T ss_dssp HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC
Confidence 9999998877644 45668999999999888777776665443
No 6
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.4e-36 Score=222.43 Aligned_cols=158 Identities=34% Similarity=0.455 Sum_probs=147.6
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcC
Q 025876 14 HKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEG 93 (247)
Q Consensus 14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g 93 (247)
+.|+.||+.|+.++|++|++.|+++ +..|..|.||||+|+..++.+++++|++.|+++ +..|..|.||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence 4799999999999999999999987 567788999999999999999999999999998 889999999999999999
Q ss_pred CHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876 94 HVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA 173 (247)
Q Consensus 94 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 173 (247)
+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|++.|+
T Consensus 82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 999999999999998 7899999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 025876 174 WLD 176 (247)
Q Consensus 174 ~~~ 176 (247)
..+
T Consensus 161 ~ie 163 (169)
T 4gpm_A 161 WLE 163 (169)
T ss_dssp ---
T ss_pred CcC
Confidence 764
No 7
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.3e-36 Score=231.40 Aligned_cols=194 Identities=16% Similarity=0.126 Sum_probs=176.2
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876 8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (247)
Q Consensus 8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 87 (247)
.|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.+....+..+..|.||||
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~ 97 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 97 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHH
Confidence 3788999999999999999999999999877 5567789999999999999999999999998444888999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeec
Q 025876 88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167 (247)
Q Consensus 88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 167 (247)
+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++
T Consensus 98 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 176 (223)
T 2f8y_A 98 LAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176 (223)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHH
Confidence 999999999999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc-cccCCccchhhHHHhhcccceeeccccCCC
Q 025876 168 PSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVGG 205 (247)
Q Consensus 168 l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 205 (247)
|++.++.. ..+..|.||+|+|+..+....+..|++.+.
T Consensus 177 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~ 215 (223)
T 2f8y_A 177 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215 (223)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence 98887644 455689999999998888777776665544
No 8
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.6e-36 Score=234.44 Aligned_cols=215 Identities=20% Similarity=0.182 Sum_probs=178.6
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHh----cCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCC
Q 025876 6 REHDEDSTHKLYEASLRGSVRSLNTLMQ----SDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (247)
Q Consensus 6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~----~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~ 81 (247)
+.+|.+|.||||+|+..|+.+++++|++ .+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 78 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRH 78 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCC
Confidence 5789999999999999999999999997 45555 556777999999999999999999999999987 788999
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHcCC----ccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccc-cCCCcHHHHH
Q 025876 82 KHSPLHLAAAEGHVQIVKELLLANK----DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK-FHGDTVLHFK 156 (247)
Q Consensus 82 g~t~l~~A~~~g~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A 156 (247)
|.||||+|+..|+.+++++|+..++ ++ +..+..|+||||+|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus 79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Confidence 9999999999999999999999987 55 6788899999999999999999999999999999998 8899999999
Q ss_pred HhcCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC---------CChhhhHHhhhhhhhhhhcccc
Q 025876 157 AEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV---------GGITFFQESFAERSLIVVTEEV 225 (247)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~ 225 (247)
+..++.+++++|++.+.. ...+..|.||+|+|+..+....+..|++. .|.+++..+...+...+++.+.
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~ 236 (241)
T 1k1a_A 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236 (241)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence 999999999999887764 44566899999999988887777665543 3444445555555555555443
No 9
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.1e-36 Score=233.98 Aligned_cols=193 Identities=23% Similarity=0.202 Sum_probs=170.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhc-CchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch----hcccCCCCcH
Q 025876 11 DSTHKLYEASLRGSVRSLNTLMQS-DSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA----KELDSLKHSP 85 (247)
Q Consensus 11 ~~~~~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~----~~~~~~g~t~ 85 (247)
.|.||||+|+..|+.+++++|++. +.++ +..|..|.||||+|+..|+.+++++|++.++++. +..|..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV---HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence 489999999999999999999998 7665 5567889999999999999999999999998753 3456789999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccCC-------------CCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcH
Q 025876 86 LHLAAAEGHVQIVKELLLANKDACLVADQ-------------DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTV 152 (247)
Q Consensus 86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~ 152 (247)
||+|+..|+.+++++|++.++++ +..+. .|+||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 99999999999999999999988 45444 79999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccee----eccccccccc-------cccCCccchhhHHHhhcccceeeccccCCChh
Q 025876 153 LHFKAEHLSLCTQ----RLPSNYAAWL-------DWTLSICYPKHLTIETRGAVAILMMPSVGGIT 207 (247)
Q Consensus 153 l~~A~~~~~~~~~----~~l~~~~~~~-------~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~ 207 (247)
||+|+..++.+++ ++|++.++.. ..+..|.||+|+|++.+....+..|++.++..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 9999999999888 8888877643 56778999999999988877777776655433
No 10
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.8e-36 Score=236.44 Aligned_cols=193 Identities=17% Similarity=0.131 Sum_probs=175.2
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876 7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86 (247)
Q Consensus 7 ~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l 86 (247)
..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.+....+..+..|.|||
T Consensus 52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L 128 (253)
T 1yyh_A 52 QTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128 (253)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHH
Confidence 35789999999999999999999999999877 556778999999999999999999999999844488899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceee
Q 025876 87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQR 166 (247)
Q Consensus 87 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 166 (247)
|+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~ 207 (253)
T 1yyh_A 129 ILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK 207 (253)
T ss_dssp HHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999999999998 788999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-cccCCccchhhHHHhhcccceeeccccC
Q 025876 167 LPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV 203 (247)
Q Consensus 167 ~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 203 (247)
+|++.++.. ..+..|.||+|+|++.+....+..+...
T Consensus 208 ~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred HHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 998887644 4566899999999988887776665544
No 11
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.9e-36 Score=232.92 Aligned_cols=186 Identities=24% Similarity=0.265 Sum_probs=102.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA 90 (247)
Q Consensus 11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 90 (247)
.+.++||.|+..|+.+.+++|+..++... ...|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAA 81 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhh--hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHH
Confidence 34555666666666666665555544321 223444556666666666666666665555554 455555556666666
Q ss_pred hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN 170 (247)
Q Consensus 91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~ 170 (247)
..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 556556666555555555 4555555566666665555556666655555555555555566666655555555555554
Q ss_pred cccc-ccccCCccchhhHHHhhcccceeecc
Q 025876 171 YAAW-LDWTLSICYPKHLTIETRGAVAILMM 200 (247)
Q Consensus 171 ~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l 200 (247)
.+.. ...+..|.||+|+|+..+....+..|
T Consensus 161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 191 (231)
T 3aji_A 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFL 191 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 4432 22333555566665555544444443
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=8.3e-36 Score=243.55 Aligned_cols=199 Identities=21% Similarity=0.181 Sum_probs=177.4
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus 49 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g 124 (351)
T 3utm_A 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQ 124 (351)
T ss_dssp TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTC
T ss_pred CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCC
Confidence 567888999999999999999999999999999877 556778999999999999999999999999998 8889999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccc---------------------------------------------------
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLV--------------------------------------------------- 111 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~--------------------------------------------------- 111 (247)
.||||+|+..|+.+++++|+++|+++ +.
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc
Confidence 99999999999999999999998876 32
Q ss_pred ---cCCCCCcHHHHHHhc---CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccch
Q 025876 112 ---ADQDGRIPLHLAAMR---GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYP 184 (247)
Q Consensus 112 ---~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~p 184 (247)
.+..|+||||+|+.. +..+++++|++.|++++..+..|.||||+|+..|+.+++++|++.+... ..+..|.||
T Consensus 204 ~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~ 283 (351)
T 3utm_A 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTA 283 (351)
T ss_dssp TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 245678999999998 6689999999999999999999999999999999999999998887644 466689999
Q ss_pred hhHHHhhcccceeeccccCCCh
Q 025876 185 KHLTIETRGAVAILMMPSVGGI 206 (247)
Q Consensus 185 l~~a~~~~~~~~~~~l~~~~~~ 206 (247)
||+|+..+....+..|++.+..
T Consensus 284 L~~A~~~~~~~~v~~Ll~~gad 305 (351)
T 3utm_A 284 LHRAALAGHLQTCRLLLSYGSD 305 (351)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999888888777665443
No 13
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=9.2e-36 Score=231.36 Aligned_cols=196 Identities=17% Similarity=0.083 Sum_probs=174.6
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCC----cchhcc
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKP----ELAKEL 78 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~----~~~~~~ 78 (247)
.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.+. ++ +..
T Consensus 37 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~ 112 (241)
T 1k1a_A 37 RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EAR 112 (241)
T ss_dssp CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCC
T ss_pred CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-ccc
Confidence 467888999999999999999999999999999877 5557789999999999999999999999987 54 778
Q ss_pred cCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHH
Q 025876 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157 (247)
Q Consensus 79 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~ 157 (247)
+..|.||||+|+..|+.+++++|++.++++ +..+ ..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 191 (241)
T 1k1a_A 113 NYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191 (241)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred CcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 899999999999999999999999999998 4555 88999999999999999999999999999999999999999999
Q ss_pred hcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccC
Q 025876 158 EHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV 203 (247)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 203 (247)
..++.+++++|++.++.. ..+..|.||+|+|+..+....+..+...
T Consensus 192 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 192 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred HcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 999999999998887654 4566899999999987776666655543
No 14
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.9e-36 Score=241.41 Aligned_cols=199 Identities=19% Similarity=0.165 Sum_probs=177.5
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
-+++.+|..|.||||+|+..|+.+++++|++.|+++ +..+ |.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus 22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g 95 (285)
T 3kea_A 22 KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK---NLLE--NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKG 95 (285)
T ss_dssp TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG---SCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTS
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCC
Confidence 367899999999999999999999999999999877 3334 999999999999999999999999998 8889999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCC-CcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCC
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDG-RIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS 161 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 161 (247)
.||||+|+..|+.+++++|++.|+++ +..+..| .||||+|+..|+.+++++|+++|++.... ..|.||||+|+..|+
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGH 173 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTC
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcCh
Confidence 99999999999999999999999998 7888889 79999999999999999999998876332 288999999999999
Q ss_pred cceeeccccccccc-cccCCccch-hhHHHhhcccceeeccccCCChhhh
Q 025876 162 LCTQRLPSNYAAWL-DWTLSICYP-KHLTIETRGAVAILMMPSVGGITFF 209 (247)
Q Consensus 162 ~~~~~~l~~~~~~~-~~~~~g~~p-l~~a~~~~~~~~~~~l~~~~~~~~~ 209 (247)
.+++++|++.++.. ..+..|.|| ||+|+..+....+..|++.+.....
T Consensus 174 ~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred HHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99999998877654 455589997 9999999998888888877655444
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.2e-36 Score=247.28 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=106.9
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch-------
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA------- 75 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~------- 75 (247)
++++..|..|.||||+|+..|+.+++++|++.|.++ +..|..|.||||+|+..|+.+++++|++.|+.+.
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~ 87 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP---TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP 87 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH
Confidence 345556666666666666666666666666666554 3445556666666666666666666666665331
Q ss_pred ---------------------------hc-----------------ccCCCCcHHHHHHhcC--CHHHHHHHHHcCCccc
Q 025876 76 ---------------------------KE-----------------LDSLKHSPLHLAAAEG--HVQIVKELLLANKDAC 109 (247)
Q Consensus 76 ---------------------------~~-----------------~~~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~ 109 (247)
+. .+..|.||||+|+..| +.+++++|++.|+++
T Consensus 88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~- 166 (364)
T 3ljn_A 88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP- 166 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-
T ss_pred HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-
Confidence 11 3444555555555555 555555555555554
Q ss_pred cccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC-----ccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccc
Q 025876 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFD-----SALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICY 183 (247)
Q Consensus 110 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~ 183 (247)
+..+..|+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.++.. ..+..|.|
T Consensus 167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t 246 (364)
T 3ljn_A 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV 246 (364)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 44555555555555555555555555555554 5555555555555555555555555555444322 23334555
Q ss_pred hhhHHHhhcccceeeccccC
Q 025876 184 PKHLTIETRGAVAILMMPSV 203 (247)
Q Consensus 184 pl~~a~~~~~~~~~~~l~~~ 203 (247)
|||+|+..+....+..|+..
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHc
Confidence 55555555554444444444
No 16
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-35 Score=248.84 Aligned_cols=220 Identities=26% Similarity=0.301 Sum_probs=154.5
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++..+..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus 5 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g 80 (437)
T 1n11_A 5 ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDD 80 (437)
T ss_dssp ----------CCHHHHHHHHTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTS
T ss_pred CCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCC
Confidence 356777888888888888888888888888887766 445566888888888888888888888888876 7778888
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+++.+..+..|.||||+|+..|+.
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~ 159 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV 159 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred CCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence 88888888888888888888888777 56777788888888888888888888777777777777777777777777777
Q ss_pred ceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC---------CChhhhHHhhhhhhhhhhccccCC
Q 025876 163 CTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV---------GGITFFQESFAERSLIVVTEEVDY 227 (247)
Q Consensus 163 ~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 227 (247)
+++++|++.+.. ...+..|.||||+|+..+....+..|+.. .|.+++..+...+...++..++..
T Consensus 160 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 777777666553 33344677777777776666665555433 334555556555555555554443
No 17
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.5e-35 Score=228.55 Aligned_cols=190 Identities=24% Similarity=0.244 Sum_probs=172.7
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++..|..|.||||+|+..|+.+++++|++.+..+ +..+..|.||||+|+..|+.+++++|++.+....+..+..|
T Consensus 35 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 111 (237)
T 3b7b_A 35 ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV---DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG 111 (237)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC---CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTS
T ss_pred CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCC
Confidence 467888899999999999999999999999999876 55677799999999999999999999999943338889999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.
T Consensus 112 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 190 (237)
T 3b7b_A 112 WTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRY 190 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 99999999999999999999999998 78899999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccccccc-cccCCccchhhHHHhhcccce
Q 025876 163 CTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVA 196 (247)
Q Consensus 163 ~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~ 196 (247)
+++++|++.+... ..+..|.||+|+|+..+....
T Consensus 191 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 191 DCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred hHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 9999998877644 456689999999997766543
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3e-35 Score=233.53 Aligned_cols=184 Identities=20% Similarity=0.165 Sum_probs=154.6
Q ss_pred ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc----------
Q 025876 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL---------- 74 (247)
Q Consensus 5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~---------- 74 (247)
++.+|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.++..
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 114 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhh
Confidence 6788999999999999999999999999999887 566778999999999999999999999987541
Q ss_pred ------------------------------------hhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC-CCCC
Q 025876 75 ------------------------------------AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD-QDGR 117 (247)
Q Consensus 75 ------------------------------------~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~ 117 (247)
.+..+..|.||||+|+..|+.+++++|++.|+++ +..+ ..|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~ 193 (282)
T 1oy3_D 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGR 193 (282)
T ss_dssp -----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCC
T ss_pred cccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCc
Confidence 2567889999999999999999999999999998 4555 4599
Q ss_pred cHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhc
Q 025876 118 IPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETR 192 (247)
Q Consensus 118 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~ 192 (247)
||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++++.. ..+..|.||++++....
T Consensus 194 tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 9999999999999999999999999999999999999999999999999999888754 45558999999998544
No 19
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.6e-36 Score=235.34 Aligned_cols=201 Identities=20% Similarity=0.167 Sum_probs=169.8
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHhcCchh-hhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876 6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLI-LRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (247)
Q Consensus 6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~-~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t 84 (247)
+..|..|.||||+|+..|+.+++++|++.+... ...+..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 80 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNT 80 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence 567899999999999999999999999887531 122556777999999999999999999999999998 888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCcc-----ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCcccccc-CCCcHHHHHHh
Q 025876 85 PLHLAAAEGHVQIVKELLLANKDA-----CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKF-HGDTVLHFKAE 158 (247)
Q Consensus 85 ~l~~A~~~g~~~~~~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~ 158 (247)
|||+|+..|+.+++++|+..++.. .+..+..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+.
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999998642 356788999999999999999999999999999999987 99999999999
Q ss_pred cCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccCCChh
Q 025876 159 HLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSVGGIT 207 (247)
Q Consensus 159 ~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~ 207 (247)
.++.+++++|++.++. ...+..|.||+|+|+..+....+..|++.+...
T Consensus 161 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 210 (236)
T 1ikn_D 161 LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210 (236)
T ss_dssp TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred cCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhh
Confidence 9999999999888764 445568999999999887777777776665543
No 20
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=230.39 Aligned_cols=194 Identities=23% Similarity=0.205 Sum_probs=171.3
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ + .+..|
T Consensus 27 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g 101 (261)
T 2xai_A 27 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDL 101 (261)
T ss_dssp CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTT
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C-CCCCC
Confidence 478889999999999999999999999999999877 566778999999999999999999999999987 3 35669
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|+..++.
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~ 179 (261)
T 2xai_A 102 ASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASE 179 (261)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCH
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCH
Confidence 99999999999999999999999998 78999999999999999999999999999999985 88999999999999999
Q ss_pred ceeecccccccc-ccccCCccchhhHHHhhcccceeeccccCCC
Q 025876 163 CTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSVGG 205 (247)
Q Consensus 163 ~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 205 (247)
+++++|++.++. ...+..|.||+|+|+.... .+..++..++
T Consensus 180 ~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~--~~~~ll~~~~ 221 (261)
T 2xai_A 180 ELACLLMDFGADTQAKNAEGKRPVELVPPESP--LAQLFLEREG 221 (261)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGSCTTCT--HHHHHHHC-C
T ss_pred HHHHHHHHcCCCCCCcCCCCCChhhhcccccc--HHHHHHhccC
Confidence 999999887764 4566689999999995433 3344444433
No 21
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=8.5e-35 Score=220.04 Aligned_cols=191 Identities=17% Similarity=0.148 Sum_probs=169.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCc-hhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQSDS-LILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 87 (247)
+..+.|+||.|+..|+.+.+++|+..+. ++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~ 77 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV---DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYL 77 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 3568899999999999999999999887 44 556777999999999999999999999999998 888999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCccccccCCCcHHHHHHhcCC-----
Q 025876 88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN-FDSALVKFHGDTVLHFKAEHLS----- 161 (247)
Q Consensus 88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~----- 161 (247)
+|+..|+.+++++|+..+....+..+..|.||||+|+..|+.+++++|++++ ++++..+..|.||||+|+..++
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 157 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLY 157 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHH
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhH
Confidence 9999999999999996655444789999999999999999999999999998 9999999999999999999998
Q ss_pred cceeeccccccccc-cccCCccchhhHHHhhcccceeeccccC
Q 025876 162 LCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV 203 (247)
Q Consensus 162 ~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 203 (247)
.+++++|++.+... ..+..|.||+|+|+..+....+..|++.
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 89999998877644 4566899999999998887777666554
No 22
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.8e-35 Score=225.11 Aligned_cols=187 Identities=22% Similarity=0.174 Sum_probs=160.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcC--CcchhcccCCCCcHHHHH
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK--PELAKELDSLKHSPLHLA 89 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~A 89 (247)
|.||||+|+..|+.+++++|++.++.... ..|..|.||||+|+..|+.+++++|++.+ .++....+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccc--cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 68999999999999999999998886533 35677999999999999999999999998 555232788999999999
Q ss_pred HhcCCHHHHHHHHHcC--CccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeec
Q 025876 90 AAEGHVQIVKELLLAN--KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167 (247)
Q Consensus 90 ~~~g~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 167 (247)
+..|+.+++++|++.+ .++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999988 666 6788899999999999999999999999999999999999999999999999999998
Q ss_pred ccccc-c-cccccCCccchhhHHHhhcccceeeccc
Q 025876 168 PSNYA-A-WLDWTLSICYPKHLTIETRGAVAILMMP 201 (247)
Q Consensus 168 l~~~~-~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~ 201 (247)
|++.+ . ....+..|.||+|+|+..+....+..|+
T Consensus 159 Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 88877 4 3445668999999999887776666665
No 23
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-36 Score=235.29 Aligned_cols=184 Identities=23% Similarity=0.234 Sum_probs=143.9
Q ss_pred ccccCCCCchHHHHHHHcCCHH-HHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876 5 AREHDEDSTHKLYEASLRGSVR-SLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH 83 (247)
Q Consensus 5 ~~~~~~~~~~~L~~A~~~g~~~-~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~ 83 (247)
++..|..+.|||+.|+..+..+ ++++|++.|+++ +..|.+|.||||+|+..|+.+++++|++.++++ +..+..|.
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~ 120 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV---NVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQA 120 (269)
T ss_dssp ------------------------------CCCCT---TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCC
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCC
Confidence 4567778999999999988765 789999999887 566788999999999999999999999999998 88899999
Q ss_pred cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC 163 (247)
Q Consensus 84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~ 163 (247)
||+|+|+..++.+++++|+..|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 121 t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~ 199 (269)
T 4b93_B 121 VPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199 (269)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred CccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHH
Confidence 9999999999999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccc-ccccCCccchhhHHHhhcc
Q 025876 164 TQRLPSNYAAW-LDWTLSICYPKHLTIETRG 193 (247)
Q Consensus 164 ~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~ 193 (247)
++++|++.++. ...+..|+||||+|++++.
T Consensus 200 ~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 200 VVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence 99999888764 4566689999999986543
No 24
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.9e-34 Score=222.20 Aligned_cols=183 Identities=19% Similarity=0.177 Sum_probs=165.1
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcC--CcchhcccCCCC
Q 025876 6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK--PELAKELDSLKH 83 (247)
Q Consensus 6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~--~~~~~~~~~~g~ 83 (247)
+..|..|.||||+|+..|+.+++++|++.++........+..|.||||+|+..|+.+++++|++.| .++ +..+..|.
T Consensus 30 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~ 108 (228)
T 2dzn_A 30 LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGV 108 (228)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCC
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCC
Confidence 347889999999999999999999999999544322226677999999999999999999999998 666 77899999
Q ss_pred cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCccccccCCCcHHHHHHhcCCc
Q 025876 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN-FDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.| ++++..|..|.||||+|+..++.
T Consensus 109 t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~ 187 (228)
T 2dzn_A 109 TCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCH
Confidence 9999999999999999999999998 788999999999999999999999999999 99999999999999999999999
Q ss_pred ceeeccc-cccc-cccccCCccchhhHHHh
Q 025876 163 CTQRLPS-NYAA-WLDWTLSICYPKHLTIE 190 (247)
Q Consensus 163 ~~~~~l~-~~~~-~~~~~~~g~~pl~~a~~ 190 (247)
+++++|+ +.++ ....+..|.||+|+|+.
T Consensus 188 ~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred HHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence 9999888 6665 44566689999999974
No 25
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3e-34 Score=227.73 Aligned_cols=188 Identities=19% Similarity=0.146 Sum_probs=108.0
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 88 (247)
+..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 111 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFME 111 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHH
Confidence 445566666666666666666666665544 333445666666666666666666666666555 5555666666666
Q ss_pred HHhcCCHHHHHHHHHcCCcccccc----------CCCCCcHHHHHHhcCcHHHHHHHHHc-CCCccccccCCCcHHHHHH
Q 025876 89 AAAEGHVQIVKELLLANKDACLVA----------DQDGRIPLHLAAMRGRVEVVQELISA-NFDSALVKFHGDTVLHFKA 157 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~l~~A~ 157 (247)
|+..|+.+++++|++.++++ +.. +..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+
T Consensus 112 A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~ 190 (285)
T 1wdy_A 112 AAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190 (285)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred HHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 66666666666666665555 222 45556666666666666666666654 6666666666666666666
Q ss_pred hcCC----cceeeccccccccc-cccCCccchhhHHHhhcccceeeccc
Q 025876 158 EHLS----LCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMP 201 (247)
Q Consensus 158 ~~~~----~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~ 201 (247)
..++ .+++++|++.+... ..+..|.||||+|+..+....+..|+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 6555 45555555544422 23345666666666555544444433
No 26
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-34 Score=241.94 Aligned_cols=220 Identities=24% Similarity=0.270 Sum_probs=184.7
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++..|..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus 38 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g 113 (437)
T 1n11_A 38 ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV---NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAG 113 (437)
T ss_dssp CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS---SCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCC
Confidence 467788889999999999999999999999998876 556777999999999999999999999999987 7888999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
.||||+|+..|+.+++++|+..+.+. ...+..|+||||+|+..|+.+++++|++++++++..+..|.||||+|+..++.
T Consensus 114 ~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 192 (437)
T 1n11_A 114 HTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 99999999999999999999998887 57788899999999999999999999999999999999999999999999999
Q ss_pred ceeeccccccccc-cccCCccchhhHHHhhcccceeecccc---------CCChhhhHHhhhhhhhhhhccccCC
Q 025876 163 CTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPS---------VGGITFFQESFAERSLIVVTEEVDY 227 (247)
Q Consensus 163 ~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (247)
+++++|+..+... ..+..|.||+|+|+..+....+..|+. ..|.+++..+...+...++..++..
T Consensus 193 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 267 (437)
T 1n11_A 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267 (437)
T ss_dssp HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence 9999888776543 444578889999888777666665543 3456667777777666666655543
No 27
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=231.32 Aligned_cols=180 Identities=23% Similarity=0.220 Sum_probs=165.4
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.++++ +. +..|
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g 157 (285)
T 3d9h_A 83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDL 157 (285)
T ss_dssp CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTT
T ss_pred CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCC
Confidence 467889999999999999999999999999999877 566788999999999999999999999999887 43 4559
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|++.|++++. +..|.||||+|+..++.
T Consensus 158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~ 235 (285)
T 3d9h_A 158 ASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASE 235 (285)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCH
Confidence 99999999999999999999999998 78999999999999999999999999999999985 88999999999999999
Q ss_pred ceeecccccccc-ccccCCccchhhHHH
Q 025876 163 CTQRLPSNYAAW-LDWTLSICYPKHLTI 189 (247)
Q Consensus 163 ~~~~~l~~~~~~-~~~~~~g~~pl~~a~ 189 (247)
+++++|++.++. ...+..|.||+|+|+
T Consensus 236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 236 ELACLLMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence 999999887764 456668999999998
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.6e-34 Score=223.12 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=174.0
Q ss_pred ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (247)
Q Consensus 5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t 84 (247)
.+..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.|
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 108 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCT 108 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC---CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 5677889999999999999999999999999876 556778999999999999999999999999998 888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcce
Q 025876 85 PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCT 164 (247)
Q Consensus 85 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~ 164 (247)
|||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++
T Consensus 109 ~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 187 (231)
T 3aji_A 109 PLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187 (231)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHH
Confidence 999999999999999999999998 7889999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccccc-cccCCccchhhHHHhhcccceeecc
Q 025876 165 QRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMM 200 (247)
Q Consensus 165 ~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l 200 (247)
+++|++.+... ..+..|.||+|+|+..+.......|
T Consensus 188 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 188 AKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp HHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 99998887654 4556899999999876655544444
No 29
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.1e-35 Score=231.71 Aligned_cols=196 Identities=21% Similarity=0.112 Sum_probs=166.7
Q ss_pred CCchHHHHHHHcCCHH----HHHHHHhcCchhhhcc-ccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcchh------
Q 025876 11 DSTHKLYEASLRGSVR----SLNTLMQSDSLILRKT-SLTSLRETPLHISALL---GHLDFTKALLNHKPELAK------ 76 (247)
Q Consensus 11 ~~~~~L~~A~~~g~~~----~~~~Ll~~~~~~~~~~-~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~------ 76 (247)
.|+||||.|+..|+.+ ++++|++.+.++.... ..|..|.||||+|+.. |+.+++++|++.|+++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4899999999999997 5677777888773200 1577899999999999 999999999998876521
Q ss_pred ----cccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCC-------------CCcHHHHHHhcCcHHHHHHHHH--
Q 025876 77 ----ELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD-------------GRIPLHLAAMRGRVEVVQELIS-- 137 (247)
Q Consensus 77 ----~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~-- 137 (247)
..|..|.||||+|+..|+.+++++|++.|+++ +..+.. |+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 13467999999999999999999999999998 566665 9999999999999999999999
Q ss_pred -cCCCccccccCCCcHHHHHHh--cCCcc-------eeeccccccccc--------cccCCccchhhHHHhhcccceeec
Q 025876 138 -ANFDSALVKFHGDTVLHFKAE--HLSLC-------TQRLPSNYAAWL--------DWTLSICYPKHLTIETRGAVAILM 199 (247)
Q Consensus 138 -~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~l~~~~~~~--------~~~~~g~~pl~~a~~~~~~~~~~~ 199 (247)
.|++++..|..|+||||+|+. .++.+ ++++|++.++.. ..+..|.||+|+|+..+....+..
T Consensus 160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~ 239 (256)
T 2etb_A 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239 (256)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHH
Confidence 999999999999999999998 77777 999998887654 566789999999998888777777
Q ss_pred cccCCChh
Q 025876 200 MPSVGGIT 207 (247)
Q Consensus 200 l~~~~~~~ 207 (247)
|++.+...
T Consensus 240 Ll~~g~~~ 247 (256)
T 2etb_A 240 ILQREFSG 247 (256)
T ss_dssp HHHHHHHH
T ss_pred HHhCCCCC
Confidence 77664443
No 30
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2e-35 Score=233.96 Aligned_cols=205 Identities=18% Similarity=0.129 Sum_probs=168.8
Q ss_pred CccccCCCCchHHHHHHHcCCHHHHHHHHhc----Cchhhhcc-ccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcc-
Q 025876 4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQS----DSLILRKT-SLTSLRETPLHISALL---GHLDFTKALLNHKPEL- 74 (247)
Q Consensus 4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~----~~~~~~~~-~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~- 74 (247)
..+..|..|.|+||.|+..|+.++++.|++. +..+.... ..|..|.||||+|+.. |+.+++++|++.|++.
T Consensus 5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~ 84 (273)
T 2pnn_A 5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD 84 (273)
T ss_dssp ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence 4567889999999999999999999998874 33332111 2367799999999987 9999999999987642
Q ss_pred -----hhc----ccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCC--------------CCCcHHHHHHhcCcHHH
Q 025876 75 -----AKE----LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ--------------DGRIPLHLAAMRGRVEV 131 (247)
Q Consensus 75 -----~~~----~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~~~~~~ 131 (247)
.+. .|..|.||||+|+..|+.+++++|++.|+++ +..+. .|+||||+|+..|+.++
T Consensus 85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 121 4678999999999999999999999999998 56665 79999999999999999
Q ss_pred HHHHHH---cCCCccccccCCCcHHHHHHhcCC---------cceeecccccccccc--------ccCCccchhhHHHhh
Q 025876 132 VQELIS---ANFDSALVKFHGDTVLHFKAEHLS---------LCTQRLPSNYAAWLD--------WTLSICYPKHLTIET 191 (247)
Q Consensus 132 v~~Ll~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~l~~~~~~~~--------~~~~g~~pl~~a~~~ 191 (247)
+++|++ .|++++..|..|+||||+|+..++ .+++++|++.++... .+..|.||||+|+..
T Consensus 164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence 999999 999999999999999999999888 688999998887664 677899999999998
Q ss_pred cccceeeccccCCChhhh
Q 025876 192 RGAVAILMMPSVGGITFF 209 (247)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~ 209 (247)
+....+..|++.+..++.
T Consensus 244 g~~~iv~~Ll~~ga~dp~ 261 (273)
T 2pnn_A 244 GKIGVLAYILQREIHEPE 261 (273)
T ss_dssp TCHHHHHHHHHHHTC---
T ss_pred ChHHHHHHHHHCCCCCch
Confidence 888888888777664443
No 31
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-34 Score=238.29 Aligned_cols=198 Identities=18% Similarity=0.144 Sum_probs=176.6
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcC---Ccchhccc
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK---PELAKELD 79 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~---~~~~~~~~ 79 (247)
.++|.+|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.+ .++ +..+
T Consensus 157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d 232 (373)
T 2fo1_E 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELD 232 (373)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCC
T ss_pred CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcC
Confidence 467889999999999999999999999999999887 556778999999999999999999999987 565 7789
Q ss_pred CCCCcHHHHHHhcC---CHHHHHHHHHcCCcccc-------ccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCccccccC
Q 025876 80 SLKHSPLHLAAAEG---HVQIVKELLLANKDACL-------VADQDGRIPLHLAAMRGRVEVVQELISAN-FDSALVKFH 148 (247)
Q Consensus 80 ~~g~t~l~~A~~~g---~~~~~~~Ll~~~~~~~~-------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~ 148 (247)
..|.||||+|+..+ +.+++++|++.++++.. ..+..|+||||+|+..|+.+++++|++++ ++++..|..
T Consensus 233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~ 312 (373)
T 2fo1_E 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED 312 (373)
T ss_dssp TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT
T ss_pred CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC
Confidence 99999999999998 89999999999988721 25778999999999999999999999875 999999999
Q ss_pred CCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCC
Q 025876 149 GDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVG 204 (247)
Q Consensus 149 g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 204 (247)
|.||||+|+..|+.+++++|++.++.. ..+..|.||+|+|+..+....+..|+..+
T Consensus 313 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 313 GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 999999999999999999998887754 45668999999999888877776666543
No 32
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.9e-34 Score=225.64 Aligned_cols=200 Identities=19% Similarity=0.130 Sum_probs=179.2
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcc----
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKEL---- 78 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~---- 78 (247)
.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ +..
T Consensus 63 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~ 138 (285)
T 1wdy_A 63 ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTK 138 (285)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCC
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccH
Confidence 467788999999999999999999999999999877 556778999999999999999999999999887 444
Q ss_pred ------cCCCCcHHHHHHhcCCHHHHHHHHHc-CCccccccCCCCCcHHHHHHhcCc----HHHHHHHHHcCCCcccccc
Q 025876 79 ------DSLKHSPLHLAAAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLAAMRGR----VEVVQELISANFDSALVKF 147 (247)
Q Consensus 79 ------~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~ 147 (247)
+..|.||||+|+..|+.+++++|++. +.++ +..+..|+||||+|+..++ .+++++|+++|++++..+.
T Consensus 139 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~ 217 (285)
T 1wdy_A 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217 (285)
T ss_dssp HHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT
T ss_pred HHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCC
Confidence 78899999999999999999999998 7777 7889999999999999999 9999999999999999999
Q ss_pred CCCcHHHHHHhcCCcceeecccc-ccc-cccccCCccchhhHHHhhcccceeeccccCCChh
Q 025876 148 HGDTVLHFKAEHLSLCTQRLPSN-YAA-WLDWTLSICYPKHLTIETRGAVAILMMPSVGGIT 207 (247)
Q Consensus 148 ~g~t~l~~A~~~~~~~~~~~l~~-~~~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~ 207 (247)
.|.||||+|+..++.+++++|++ .+. ....+..|.||+|+|+..+....+..|++.+...
T Consensus 218 ~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~ 279 (285)
T 1wdy_A 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence 99999999999999999998887 554 4556678999999999988877777777665543
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.1e-35 Score=230.03 Aligned_cols=209 Identities=18% Similarity=0.125 Sum_probs=154.7
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhh-----ccccccCCCcHHHHHHhcCCH-HHHHHHHhcCCcchhccc
Q 025876 6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILR-----KTSLTSLRETPLHISALLGHL-DFTKALLNHKPELAKELD 79 (247)
Q Consensus 6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~-----~~~~~~~g~t~L~~A~~~g~~-~~~~~Ll~~~~~~~~~~~ 79 (247)
..+|..+.++|+.|+..|+.++|++|++.+..... .+..+..+.||||.|+..+.. .++++|++.|+++ +..|
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d 83 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTS 83 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCC
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcC
Confidence 45677889999999999999999999998875321 234556699999999988776 4889999999998 8899
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhc
Q 025876 80 SLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEH 159 (247)
Q Consensus 80 ~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~ 159 (247)
..|.||||+|+..|+.+++++|+..++++ +..+..|.||+++|+..++.+++++|++.|++++..|..|+||||+|+..
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence 99999999999999999999999999998 78899999999999999999999999999999999999999999999999
Q ss_pred CCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC---------CChhhhHHhhhhh
Q 025876 160 LSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV---------GGITFFQESFAER 216 (247)
Q Consensus 160 ~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~ 216 (247)
|+.+++++|++.++. ...+..|.||||+|+..+....+..|++. .|.+++..+..+.
T Consensus 163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence 999999999887764 45566899999999998888777776544 4555555554443
No 34
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=3.3e-34 Score=215.54 Aligned_cols=164 Identities=17% Similarity=0.141 Sum_probs=154.5
Q ss_pred CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876 4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH 83 (247)
Q Consensus 4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~ 83 (247)
..|.+|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 102 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL---EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGK 102 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSC
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc---ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCC
Confidence 45778999999999999999999999999998876 556777999999999999999999999999997 88899999
Q ss_pred cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC 163 (247)
Q Consensus 84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~ 163 (247)
||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence 9999999999999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccc
Q 025876 164 TQRLPSNYA 172 (247)
Q Consensus 164 ~~~~l~~~~ 172 (247)
++++|++.+
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999988764
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=217.45 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=183.6
Q ss_pred ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (247)
Q Consensus 5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t 84 (247)
++..|..+.++|+.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.+..+....+..|.|
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 78 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST 78 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence 5667889999999999999999999999999876 5556779999999999999999999999999885566677999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCC-cc
Q 025876 85 PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLS-LC 163 (247)
Q Consensus 85 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~ 163 (247)
|||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence 999999999999999999999988 6789999999999999999999999999999999999999999999996665 78
Q ss_pred eeecccccccccc-ccC-CccchhhHHHhhcccceeecccc---------CCChhhhHHhhhhhhhhhhccccC
Q 025876 164 TQRLPSNYAAWLD-WTL-SICYPKHLTIETRGAVAILMMPS---------VGGITFFQESFAERSLIVVTEEVD 226 (247)
Q Consensus 164 ~~~~l~~~~~~~~-~~~-~g~~pl~~a~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 226 (247)
++++|.+.+.... .+. .|.||||+|+..+....+..|++ ..|.+++..+...+...++..+..
T Consensus 158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 8888887776544 333 78999999998888777666544 344555666666655555554443
No 36
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-34 Score=238.55 Aligned_cols=220 Identities=16% Similarity=0.116 Sum_probs=188.3
Q ss_pred CCccccC-CCCchHHHHHHHcCCHHHHHHHH--------hcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc
Q 025876 3 IGAREHD-EDSTHKLYEASLRGSVRSLNTLM--------QSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE 73 (247)
Q Consensus 3 ~~~~~~~-~~~~~~L~~A~~~g~~~~~~~Ll--------~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~ 73 (247)
.+++..| ..|.||||+|+..|+.+++++|+ +.|.++ +..|..|.||||+|+..|+.+++++|++.|++
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v---n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 191 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC---cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC
Confidence 3567788 78999999999999998888776 677776 56678899999999999999999999999999
Q ss_pred chhcccCCCCcHHHHHHhcCCHHHHHHHHHcC---CccccccCCCCCcHHHHHHhcC---cHHHHHHHHHcCCCccc---
Q 025876 74 LAKELDSLKHSPLHLAAAEGHVQIVKELLLAN---KDACLVADQDGRIPLHLAAMRG---RVEVVQELISANFDSAL--- 144 (247)
Q Consensus 74 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~---~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~~~~~--- 144 (247)
+ +..+..|.||||+|+..|+.+++++|+..+ .++ +..+..|+||||+|+..+ +.+++++|+++|++++.
T Consensus 192 ~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 269 (373)
T 2fo1_E 192 P-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269 (373)
T ss_dssp S-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred C-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence 8 888999999999999999999999999987 566 678999999999999988 89999999999999886
Q ss_pred -----cccCCCcHHHHHHhcCCcceeecccccc--ccccccCCccchhhHHHhhcccceeecccc---------CCChhh
Q 025876 145 -----VKFHGDTVLHFKAEHLSLCTQRLPSNYA--AWLDWTLSICYPKHLTIETRGAVAILMMPS---------VGGITF 208 (247)
Q Consensus 145 -----~~~~g~t~l~~A~~~~~~~~~~~l~~~~--~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~---------~~~~~~ 208 (247)
.+..|.||||+|+..|+.+++++|++.+ +....+..|.||||+|+..+....+..|+. ..|.++
T Consensus 270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~ 349 (373)
T 2fo1_E 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 349 (373)
T ss_dssp GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence 5678999999999999999999998654 455667789999999999888777776654 445567
Q ss_pred hHHhhhhhhhhhhccccCC
Q 025876 209 FQESFAERSLIVVTEEVDY 227 (247)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~ 227 (247)
+..+...+...++..+...
T Consensus 350 l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 350 RQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 7777777766666655443
No 37
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.7e-34 Score=227.05 Aligned_cols=199 Identities=19% Similarity=0.101 Sum_probs=167.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHh----cCchhhhcc-ccccCCCcHHHHHH---hcCCHHHHHHHHhcCCcc------
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQ----SDSLILRKT-SLTSLRETPLHISA---LLGHLDFTKALLNHKPEL------ 74 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~----~~~~~~~~~-~~~~~g~t~L~~A~---~~g~~~~~~~Ll~~~~~~------ 74 (247)
+..++++||.|++.|+.+.++.|++ .+..+.... ..|..|.||||+|+ ..|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 5679999999999999996555554 777764332 22466999999999 679999999999987542
Q ss_pred ----hhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC--------------CCCCcHHHHHHhcCcHHHHHHHH
Q 025876 75 ----AKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD--------------QDGRIPLHLAAMRGRVEVVQELI 136 (247)
Q Consensus 75 ----~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~Ll 136 (247)
....|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|+||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 1334558999999999999999999999999998 5666 68999999999999999999999
Q ss_pred H---cCCCccccccCCCcHHHHHHhcCC---------cceeeccccccccc--------cccCCccchhhHHHhhcccce
Q 025876 137 S---ANFDSALVKFHGDTVLHFKAEHLS---------LCTQRLPSNYAAWL--------DWTLSICYPKHLTIETRGAVA 196 (247)
Q Consensus 137 ~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~l~~~~~~~--------~~~~~g~~pl~~a~~~~~~~~ 196 (247)
+ .|++++..|..|+||||+|+..++ .+++++|++.++.. ..+..|.||||+|+..+....
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~ 240 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHH
Confidence 9 999999999999999999998877 68999998888754 467789999999998888777
Q ss_pred eeccccCCChhh
Q 025876 197 ILMMPSVGGITF 208 (247)
Q Consensus 197 ~~~l~~~~~~~~ 208 (247)
+..|+++++...
T Consensus 241 v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 241 FQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhCCCcc
Confidence 777776655443
No 38
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=3.6e-33 Score=206.18 Aligned_cols=169 Identities=21% Similarity=0.215 Sum_probs=149.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHh
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA 91 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~ 91 (247)
+.+|||.|+..|+.+++++|++.+.... +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGG--GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccc--cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence 4689999999999999999999988632 455777999999999999999999999999998 8889999999999999
Q ss_pred cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876 92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY 171 (247)
Q Consensus 92 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 171 (247)
.|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|+++
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999999998 78899999999999999999999999999999999999999999999999999999999888
Q ss_pred cccc-cccCCccch
Q 025876 172 AAWL-DWTLSICYP 184 (247)
Q Consensus 172 ~~~~-~~~~~g~~p 184 (247)
+... ..+..|.||
T Consensus 158 ~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHSCC-------
T ss_pred HHHHhcccCCCCCC
Confidence 7644 333355554
No 39
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=6e-33 Score=209.85 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=152.5
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+....+..+..|
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 106 (201)
T 3hra_A 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI---NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG 106 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCC
Confidence 367889999999999999999999999999999887 55677899999999999999999999965543338889999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcC-CccccccCCCCCcHHHHHHhcCc-----HHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876 83 HSPLHLAAAEGHVQIVKELLLAN-KDACLVADQDGRIPLHLAAMRGR-----VEVVQELISANFDSALVKFHGDTVLHFK 156 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~~~~~~~~~~~g~t~l~~A 156 (247)
.||||+|+..|+.+++++|++.+ .++ +..+..|+||||+|+..+. .+++++|+++|++++..|..|.||||+|
T Consensus 107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 185 (201)
T 3hra_A 107 GNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185 (201)
T ss_dssp CCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHH
Confidence 99999999999999999999999 555 7899999999999999887 9999999999999999999999999999
Q ss_pred HhcCCcceeecccccc
Q 025876 157 AEHLSLCTQRLPSNYA 172 (247)
Q Consensus 157 ~~~~~~~~~~~l~~~~ 172 (247)
+..++.+++++|+++|
T Consensus 186 ~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 186 NQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTCHHHHHHHHTCC
T ss_pred HHcCCHhHHHHHHhcC
Confidence 9999999999998764
No 40
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=4.5e-33 Score=204.70 Aligned_cols=160 Identities=22% Similarity=0.234 Sum_probs=150.7
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA 90 (247)
Q Consensus 11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 90 (247)
.|.||||.|+..|+.+++++|++.+..+ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI---NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 4789999999999999999999998776 566778999999999999999999999999988 888999999999999
Q ss_pred hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN 170 (247)
Q Consensus 91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~ 170 (247)
..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999998 7889999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccc
Q 025876 171 YAAWL 175 (247)
Q Consensus 171 ~~~~~ 175 (247)
+....
T Consensus 157 ~~~~~ 161 (167)
T 3v31_A 157 HLLKL 161 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 41
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=8.9e-33 Score=203.61 Aligned_cols=159 Identities=30% Similarity=0.423 Sum_probs=148.1
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 88 (247)
...+.++|++|++.|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL 86 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 446789999999999999999999999877 556778999999999999999999999999987 8889999999999
Q ss_pred HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP 168 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 168 (247)
|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 99999999999999999998 78899999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 025876 169 SNYA 172 (247)
Q Consensus 169 ~~~~ 172 (247)
++.|
T Consensus 166 ~~~G 169 (169)
T 2y1l_E 166 QKLN 169 (169)
T ss_dssp HTC-
T ss_pred HHcC
Confidence 8754
No 42
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.1e-32 Score=224.50 Aligned_cols=223 Identities=17% Similarity=0.083 Sum_probs=139.9
Q ss_pred CccccCC-CCchHHHHHHHcCCHHHHHHHHhcCchhhh------------------------------ccccccCCCcHH
Q 025876 4 GAREHDE-DSTHKLYEASLRGSVRSLNTLMQSDSLILR------------------------------KTSLTSLRETPL 52 (247)
Q Consensus 4 ~~~~~~~-~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~------------------------------~~~~~~~g~t~L 52 (247)
|+|.++. .|.||||+|+..|+.+++++|++.|+++.. .+..|..|.|||
T Consensus 50 dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l 129 (337)
T 4g8k_A 50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF 129 (337)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHH
T ss_pred CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHH
Confidence 4444443 366666666666666666666666554321 123445566666
Q ss_pred HHHHhcCCHHHHHHHHhcCCcch---------hcccCCCCcHHHHHHhcCCHHHHHHHHHc-CCccccccCCCCCcHHHH
Q 025876 53 HISALLGHLDFTKALLNHKPELA---------KELDSLKHSPLHLAAAEGHVQIVKELLLA-NKDACLVADQDGRIPLHL 122 (247)
Q Consensus 53 ~~A~~~g~~~~~~~Ll~~~~~~~---------~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~ 122 (247)
|+|+..|+.+++++|++.|+++. ...+..|.||||+|+..|+.+++++|+.. |+++ +..+..|+|+++.
T Consensus 130 ~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~t~l~~ 208 (337)
T 4g8k_A 130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIH 208 (337)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSCCHHHH
T ss_pred HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCCcHHHH
Confidence 66666666666666666665441 12244566777777777777777777753 5555 5666677777766
Q ss_pred HHhcCc----HHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc--cccccccCCccchhhHHHhhcccce
Q 025876 123 AAMRGR----VEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY--AAWLDWTLSICYPKHLTIETRGAVA 196 (247)
Q Consensus 123 A~~~~~----~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~--~~~~~~~~~g~~pl~~a~~~~~~~~ 196 (247)
++..+. ..++++|+++|++++.++..|+||||+|+..++.+++++|+.. .+....+..|+||||+|++.+....
T Consensus 209 ~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~i 288 (337)
T 4g8k_A 209 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 288 (337)
T ss_dssp HHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHH
Confidence 654332 3466777777777777777777888888877777777766543 2345556677888888887777777
Q ss_pred eeccccCCCh----hhhHHhhhhhhhhhhccccCC
Q 025876 197 ILMMPSVGGI----TFFQESFAERSLIVVTEEVDY 227 (247)
Q Consensus 197 ~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 227 (247)
+..|++.+.. ++++.+...+...++..++..
T Consensus 289 v~~Ll~~GAd~n~~~~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 289 AELLCKRGASTDCGDLVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp HHHHHTTSCSSTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 7777655433 344555556666666665554
No 43
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=9.9e-34 Score=226.84 Aligned_cols=123 Identities=21% Similarity=0.276 Sum_probs=96.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 88 (247)
+..|.|+|+.|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~ 112 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHA 112 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence 446788999999999999999999988876 455677899999999999999999999998887 7788889999999
Q ss_pred HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHH
Q 025876 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI 136 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 136 (247)
|+..|+.+++++|+..|+++ +..+..|.||||+|+..++.+++++++
T Consensus 113 A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 113 AASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEV 159 (299)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence 99999999999999988877 455555555555555544444444443
No 44
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=216.07 Aligned_cols=199 Identities=23% Similarity=0.247 Sum_probs=176.9
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++..|..|.||||+|+..|+.+++++|++.+...... .+..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 109 (240)
T 3eu9_A 33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL--GGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEG 109 (240)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhh--cCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCC
Confidence 467788999999999999999999999999999876432 3345999999999999999999999999998 7889999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCc-HHHHHHHHHcCCCcccccc-CCCcHHHHHHhcC
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-VEVVQELISANFDSALVKF-HGDTVLHFKAEHL 160 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~v~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~ 160 (247)
.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..++ .+++++|++.+++++..+. .|.||||+|+..+
T Consensus 110 ~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~ 188 (240)
T 3eu9_A 110 CSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188 (240)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence 99999999999999999999999988 7889999999999997766 8999999999999999986 8999999999999
Q ss_pred Ccceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCCC
Q 025876 161 SLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVGG 205 (247)
Q Consensus 161 ~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 205 (247)
+.+++++|++.+... ..+..|.||+|+|+..+....+..|++.+.
T Consensus 189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp CHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhh
Confidence 999999998887644 455689999999998888777777665543
No 45
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.3e-32 Score=211.26 Aligned_cols=172 Identities=21% Similarity=0.206 Sum_probs=158.5
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++..|..|.||||+|+..|+.+++++|++.++... +..+..|.||||+|+..|+.+++++|++.++++ +..+..|
T Consensus 49 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g 125 (223)
T 2f8y_A 49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL--DARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLG 125 (223)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTS
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCC
Confidence 4678889999999999999999999999999887322 455677999999999999999999999999998 8889999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 83 HSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||+++|+..++.
T Consensus 126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 204 (223)
T 2f8y_A 126 KSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH 204 (223)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch
Confidence 99999999999999999999999988 78899999999999999999999999999999999999999999999999999
Q ss_pred ceeecccccccccccc
Q 025876 163 CTQRLPSNYAAWLDWT 178 (247)
Q Consensus 163 ~~~~~l~~~~~~~~~~ 178 (247)
+++++|++++......
T Consensus 205 ~i~~~L~~~g~~~~~~ 220 (223)
T 2f8y_A 205 DIVRLLDEYNLVRSPQ 220 (223)
T ss_dssp HHHHHHHHTTCSSCC-
T ss_pred HHHHHHHHcCCCcccc
Confidence 9999999988765443
No 46
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.1e-32 Score=213.09 Aligned_cols=171 Identities=18% Similarity=0.194 Sum_probs=154.5
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhc--cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRK--TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDS 80 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~ 80 (247)
.+++.+|..|.||||+|+..|+.+++++|++.+++.... ...|..|.||||+|+..|+.+++++|++.|+++ +..+.
T Consensus 28 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~ 106 (232)
T 2rfa_A 28 CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARAT 106 (232)
T ss_dssp SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCC
T ss_pred CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-CcccC
Confidence 477889999999999999999999999999999875332 335667999999999999999999999999987 55444
Q ss_pred -------------CCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHH----HHHHHcCCCc-
Q 025876 81 -------------LKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV----QELISANFDS- 142 (247)
Q Consensus 81 -------------~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~- 142 (247)
.|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++ ++|+++|++.
T Consensus 107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 7999999999999999999999999998 78999999999999999999988 9999999988
Q ss_pred -----cccccCCCcHHHHHHhcCCcceeeccccccccc
Q 025876 143 -----ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL 175 (247)
Q Consensus 143 -----~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 175 (247)
+..|..|.||||+|+..|+.+++++|++++...
T Consensus 186 ~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 186 LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp SCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 577999999999999999999999999888654
No 47
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-33 Score=226.39 Aligned_cols=184 Identities=21% Similarity=0.230 Sum_probs=164.7
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g 82 (247)
.+++..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..|
T Consensus 64 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g 139 (299)
T 1s70_B 64 ADINYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEG 139 (299)
T ss_dssp CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCC
Confidence 467888999999999999999999999999999887 556778999999999999999999999999998 8889999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHc-CCccc-------------------------cccCCCCCcHHHHHHhcCcHHHHHHHH
Q 025876 83 HSPLHLAAAEGHVQIVKELLLA-NKDAC-------------------------LVADQDGRIPLHLAAMRGRVEVVQELI 136 (247)
Q Consensus 83 ~t~l~~A~~~g~~~~~~~Ll~~-~~~~~-------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll 136 (247)
.||||+|+..++.++++.++.. +.++. ...+..|.||||+|+..|+.+++++|+
T Consensus 140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 219 (299)
T 1s70_B 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219 (299)
T ss_dssp CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence 9999999999999999988865 33321 124578999999999999999999999
Q ss_pred HcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHh
Q 025876 137 SANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIE 190 (247)
Q Consensus 137 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~ 190 (247)
++|++++..|..|.||||+|+..|+.+++++|++.++.. ..+..|.||+|+|.+
T Consensus 220 ~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred HcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999998887644 456689999999863
No 48
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.8e-33 Score=218.13 Aligned_cols=183 Identities=19% Similarity=0.113 Sum_probs=163.4
Q ss_pred CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc-----chhcc
Q 025876 4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE-----LAKEL 78 (247)
Q Consensus 4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~-----~~~~~ 78 (247)
+++..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.+.. ..+..
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 113 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 113 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhcc
Confidence 67889999999999999999999999999999877 55677899999999999999999999999864 23677
Q ss_pred cCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCC-CCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHH
Q 025876 79 DSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQ-DGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKA 157 (247)
Q Consensus 79 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~ 157 (247)
+..|.||||+|+..|+.+++++|++.|+++ +..+. .|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+
T Consensus 114 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 192 (236)
T 1ikn_D 114 NYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192 (236)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHH
Confidence 889999999999999999999999999999 56776 9999999999999999999999999999999999999999999
Q ss_pred hcCCcceeeccccccccc---cccCCccchhhHHHh
Q 025876 158 EHLSLCTQRLPSNYAAWL---DWTLSICYPKHLTIE 190 (247)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~---~~~~~g~~pl~~a~~ 190 (247)
..++.+++++|++.++.. ..+..+.+|...+..
T Consensus 193 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 193 GRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp TSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred ccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 999999999999888744 333457777766553
No 49
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.9e-34 Score=233.37 Aligned_cols=199 Identities=13% Similarity=0.054 Sum_probs=166.7
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhc--------------------------------c--------
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRK--------------------------------T-------- 42 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~--------------------------------~-------- 42 (247)
.+++.+|..|.||||+|+..|+.+++++|++.++..... +
T Consensus 44 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 123 (364)
T 3ljn_A 44 VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE 123 (364)
T ss_dssp CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcch
Confidence 356777777888888888888888888887776533210 0
Q ss_pred ---------ccccCCCcHHHHHHhcC--CHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCc----
Q 025876 43 ---------SLTSLRETPLHISALLG--HLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD---- 107 (247)
Q Consensus 43 ---------~~~~~g~t~L~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~---- 107 (247)
..|..|.||||+|+..| +.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.+++
T Consensus 124 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 202 (364)
T 3ljn_A 124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSL 202 (364)
T ss_dssp CCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSC
T ss_pred HhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Confidence 15567999999999999 999999999999998 88899999999999999999999999999988
Q ss_pred -cccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-----------
Q 025876 108 -ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL----------- 175 (247)
Q Consensus 108 -~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~----------- 175 (247)
+ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.++..
T Consensus 203 ~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 281 (364)
T 3ljn_A 203 RL-DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT 281 (364)
T ss_dssp CT-TCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSS
T ss_pred cc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcc
Confidence 6 788999999999999999999999999999999999999999999999999999999998876532
Q ss_pred --cccCCccchhhHHHhhcccceeeccccC
Q 025876 176 --DWTLSICYPKHLTIETRGAVAILMMPSV 203 (247)
Q Consensus 176 --~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 203 (247)
..+..+++|++.|+..+....+..++..
T Consensus 282 ~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~ 311 (364)
T 3ljn_A 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311 (364)
T ss_dssp SBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhccCHHHHHHHHHH
Confidence 1344678888888866655555555444
No 50
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=1.1e-32 Score=201.50 Aligned_cols=158 Identities=25% Similarity=0.323 Sum_probs=146.4
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHH
Q 025876 10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA 89 (247)
Q Consensus 10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A 89 (247)
+...|+||.|+..|+.+++++|++.+.++ +..|..|.||||+|+. |+.+++++|++.|+++ +..+..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDA 77 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 35679999999999999999999999877 5567789999999999 9999999999999998 88899999999999
Q ss_pred HhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC-ccccccCCCcHHHHHHhcCCcceeecc
Q 025876 90 AAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD-SALVKFHGDTVLHFKAEHLSLCTQRLP 168 (247)
Q Consensus 90 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~l~~A~~~~~~~~~~~l 168 (247)
+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++.+++++|
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 156 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999999988 78899999999999999999999999999998 588899999999999999999999999
Q ss_pred ccccc
Q 025876 169 SNYAA 173 (247)
Q Consensus 169 ~~~~~ 173 (247)
+++++
T Consensus 157 l~~GA 161 (162)
T 1ihb_A 157 QANGA 161 (162)
T ss_dssp HHTC-
T ss_pred HHhCC
Confidence 88765
No 51
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.8e-32 Score=222.64 Aligned_cols=182 Identities=22% Similarity=0.200 Sum_probs=164.3
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhc-----
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKE----- 77 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~----- 77 (247)
.+++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ +.
T Consensus 82 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 157 (351)
T 3utm_A 82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV---NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHG 157 (351)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCC
Confidence 467889999999999999999999999999999877 556778999999999999999999999998875 32
Q ss_pred -------------------------------------------------ccCCCCcHHHHHHhc---CCHHHHHHHHHcC
Q 025876 78 -------------------------------------------------LDSLKHSPLHLAAAE---GHVQIVKELLLAN 105 (247)
Q Consensus 78 -------------------------------------------------~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~ 105 (247)
.+..|.||||+|+.. +..+++++|+..+
T Consensus 158 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g 237 (351)
T 3utm_A 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237 (351)
T ss_dssp CCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT
T ss_pred CcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC
Confidence 246678999999999 5589999999999
Q ss_pred CccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc-ccccCCccch
Q 025876 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYP 184 (247)
Q Consensus 106 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~p 184 (247)
+++ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.++. ...+..|.||
T Consensus 238 ~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ta 316 (351)
T 3utm_A 238 ANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316 (351)
T ss_dssp CCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCh
Confidence 998 78899999999999999999999999999999999999999999999999999999999888764 4555689999
Q ss_pred hhHHH
Q 025876 185 KHLTI 189 (247)
Q Consensus 185 l~~a~ 189 (247)
+++|.
T Consensus 317 l~~a~ 321 (351)
T 3utm_A 317 AQMGN 321 (351)
T ss_dssp HHHSC
T ss_pred hhhhh
Confidence 99973
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1e-32 Score=203.07 Aligned_cols=156 Identities=31% Similarity=0.316 Sum_probs=142.9
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcH
Q 025876 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129 (247)
Q Consensus 50 t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 129 (247)
++|+.||+.|+.+++++|++.|+++ +..|..|.||||+|+..++.+++++|+..|+++ +..+..|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCH
Confidence 4699999999999999999999998 889999999999999999999999999999999 78999999999999999999
Q ss_pred HHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccCCChh
Q 025876 130 EVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSVGGIT 207 (247)
Q Consensus 130 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~ 207 (247)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.++. ...+..|+||||+|+..+....+..|++.|+..
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 999999999999999999999999999999999999999887764 456668999999999999888888888777643
No 53
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=4e-32 Score=196.83 Aligned_cols=151 Identities=27% Similarity=0.305 Sum_probs=142.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHh
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAA 91 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~ 91 (247)
..++|+.|+..|+.+++++|++.+.+.. .+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 4689999999999999999999998652 4677999999999999999999999999998 8889999999999999
Q ss_pred cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876 92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP 168 (247)
Q Consensus 92 ~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 168 (247)
.|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|
T Consensus 77 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999998 78899999999999999999999999999999999999999999999999999998876
No 54
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=3.3e-33 Score=219.23 Aligned_cols=171 Identities=19% Similarity=0.117 Sum_probs=153.5
Q ss_pred CCccc----cCCCCchHHHHHHHc---CCHHHHHHHHhcCchhhhcc--------ccccCCCcHHHHHHhcCCHHHHHHH
Q 025876 3 IGARE----HDEDSTHKLYEASLR---GSVRSLNTLMQSDSLILRKT--------SLTSLRETPLHISALLGHLDFTKAL 67 (247)
Q Consensus 3 ~~~~~----~~~~~~~~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~--------~~~~~g~t~L~~A~~~g~~~~~~~L 67 (247)
.+++. +|..|.||||+|+.. |+.+++++|++.+++..... ..|..|.||||+|+..|+.+++++|
T Consensus 30 ~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~L 109 (256)
T 2etb_A 30 KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLL 109 (256)
T ss_dssp CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHH
T ss_pred CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHH
Confidence 35666 799999999999999 99999999999987663221 2346699999999999999999999
Q ss_pred HhcCCcchhcccCC-------------CCcHHHHHHhcCCHHHHHHHHH---cCCccccccCCCCCcHHHHHHh--cCcH
Q 025876 68 LNHKPELAKELDSL-------------KHSPLHLAAAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAM--RGRV 129 (247)
Q Consensus 68 l~~~~~~~~~~~~~-------------g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~--~~~~ 129 (247)
++.|+++ +..+.. |.||||+|+..|+.+++++|++ .|+++ +..|..|+||||+|+. .++.
T Consensus 110 l~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~ 187 (256)
T 2etb_A 110 VENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSP 187 (256)
T ss_dssp HHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCH
T ss_pred HHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCc
Confidence 9999998 666665 9999999999999999999999 89988 7899999999999998 7888
Q ss_pred H-------HHHHHHHcCCCc-------cccccCCCcHHHHHHhcCCcceeeccccccccc
Q 025876 130 E-------VVQELISANFDS-------ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL 175 (247)
Q Consensus 130 ~-------~v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 175 (247)
+ ++++|+++|+++ +..|..|.||||+|+..|+.+++++|++++...
T Consensus 188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 8 999999999999 889999999999999999999999999887654
No 55
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=100.00 E-value=1.5e-32 Score=201.55 Aligned_cols=161 Identities=26% Similarity=0.319 Sum_probs=145.9
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHH
Q 025876 8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (247)
Q Consensus 8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 87 (247)
.|..+.++|+.|+..|+.+++++|++.+.. .....+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHH
Confidence 467889999999999999999999986652 22455677999999999999999999999999998 888999999999
Q ss_pred HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeec
Q 025876 88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRL 167 (247)
Q Consensus 88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 167 (247)
+|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..|..|.|||++|+. ++.+++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence 999999999999999999998 7889999999999999999999999999999999999999999999777 88999999
Q ss_pred cccccc
Q 025876 168 PSNYAA 173 (247)
Q Consensus 168 l~~~~~ 173 (247)
|++.++
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 987764
No 56
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.98 E-value=5.5e-32 Score=220.44 Aligned_cols=201 Identities=21% Similarity=0.185 Sum_probs=175.2
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhc-------cccccCCCcHHHHHHhcCCHHHHHHHHh-cCCcc
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRK-------TSLTSLRETPLHISALLGHLDFTKALLN-HKPEL 74 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~-------~~~~~~g~t~L~~A~~~g~~~~~~~Ll~-~~~~~ 74 (247)
.+++..|..|.||||+|+..|+.+++++|++.|+++... ...+..|.||||+|+..|+.+++++|++ .|+++
T Consensus 116 ~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~ 195 (337)
T 4g8k_A 116 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 195 (337)
T ss_dssp CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT
T ss_pred chhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc
Confidence 467889999999999999999999999999998866322 1234569999999999999999999996 57887
Q ss_pred hhcccCCCCcHHHHHHhcCC----HHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH-cCCCccccccCC
Q 025876 75 AKELDSLKHSPLHLAAAEGH----VQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHG 149 (247)
Q Consensus 75 ~~~~~~~g~t~l~~A~~~g~----~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g 149 (247)
+..+..|.|+++.++..+. ..++++|+++|+++ +..+..|+||||+|+..|+.+++++|+. .+++++.+|..|
T Consensus 196 -n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G 273 (337)
T 4g8k_A 196 -NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 273 (337)
T ss_dssp -TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTS
T ss_pred -CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCC
Confidence 8899999999998876654 45889999999998 7899999999999999999999999998 489999999999
Q ss_pred CcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeeccccCCChhhh
Q 025876 150 DTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGITFF 209 (247)
Q Consensus 150 ~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~~~~ 209 (247)
+||||+|+..|+.+++++|++.|+.. ...+|||+|+..+....+..|++.|....+
T Consensus 274 ~TpL~~A~~~g~~~iv~~Ll~~GAd~----n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 274 KTALLLAVELKLKKIAELLCKRGAST----DCGDLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp CBHHHHHHHTTCHHHHHHHHTTSCSS----TTCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 99999999999999999999988754 456899999999998888888888776655
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.98 E-value=3.6e-32 Score=215.73 Aligned_cols=192 Identities=18% Similarity=0.122 Sum_probs=131.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH-
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA- 90 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~- 90 (247)
..+++|.|+..|+.+.++.+++.+... ..+..|..|.||||+|+..|+.+++++|++.|+...+..+..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence 345667777777777777777665542 124456667777777777777777777777776223667777777777777
Q ss_pred ----hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceee
Q 025876 91 ----AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQR 166 (247)
Q Consensus 91 ----~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 166 (247)
..++.+++++|+..+... ...+..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.++++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 456677777777777665 556667777777777777777777777777777777777777777777777777777
Q ss_pred cccc-ccc-cccccCCccchhhHHHhhcccceeeccccCCC
Q 025876 167 LPSN-YAA-WLDWTLSICYPKHLTIETRGAVAILMMPSVGG 205 (247)
Q Consensus 167 ~l~~-~~~-~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~ 205 (247)
+|++ .+. ....+..|.||+|+|+..+....+..|++..+
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 6665 443 33455567777777777777666666655543
No 58
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.2e-33 Score=214.25 Aligned_cols=187 Identities=14% Similarity=0.054 Sum_probs=162.4
Q ss_pred cccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcH
Q 025876 6 REHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSP 85 (247)
Q Consensus 6 ~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~ 85 (247)
+..+..+.|+||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tp 90 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDP---SQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTP 90 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence 345667889999999999999999999999877 556788999999999999999999999999998 8899999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH--HhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcc
Q 025876 86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA--AMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLC 163 (247)
Q Consensus 86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~ 163 (247)
||+|+..|+.+++++|++.|+++....+..|+||||+| +..|+.+++++|++.|++++..+..|.||++.++....
T Consensus 91 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~-- 168 (229)
T 2vge_A 91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG-- 168 (229)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST--
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc--
Confidence 99999999999999999999999433357999999999 99999999999999999999999999999986554433
Q ss_pred eeecccccccc---ccccCCccchhhHHHhhcccceeec
Q 025876 164 TQRLPSNYAAW---LDWTLSICYPKHLTIETRGAVAILM 199 (247)
Q Consensus 164 ~~~~l~~~~~~---~~~~~~g~~pl~~a~~~~~~~~~~~ 199 (247)
.++|+..++. ...+..|+||||+|+..+....+..
T Consensus 169 -~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 169 -DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp -TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred -cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 3566666654 4566689999999998887777665
No 59
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=2.4e-31 Score=193.26 Aligned_cols=153 Identities=24% Similarity=0.310 Sum_probs=142.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCc-hhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDS-LILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA 90 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 90 (247)
+.|+|+.|+..|+.+++++|++... ++ +..|..|.||||+ +..|+.+++++|++.|+++ +..|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHP---DALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCc---cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence 5799999999999999999999822 33 5567789999999 9999999999999999998 888999999999999
Q ss_pred hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN 170 (247)
Q Consensus 91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~ 170 (247)
..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++. ++++..+..|.|||++|+..++.+++++|++
T Consensus 77 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 999999999999999988 78899999999999999999999999998 9999999999999999999999999998876
Q ss_pred c
Q 025876 171 Y 171 (247)
Q Consensus 171 ~ 171 (247)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 4
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.4e-32 Score=218.05 Aligned_cols=165 Identities=19% Similarity=0.211 Sum_probs=153.6
Q ss_pred CccccCCCCchHHHHHHHcCCHHHHHHHHhcCc-hhhhccccccCCCcHHHHHH-----hcCCHHHHHHHHhcCCcchhc
Q 025876 4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDS-LILRKTSLTSLRETPLHISA-----LLGHLDFTKALLNHKPELAKE 77 (247)
Q Consensus 4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~~~g~t~L~~A~-----~~g~~~~~~~Ll~~~~~~~~~ 77 (247)
.+|.+|..|.||||+|+..|+.+++++|++.++ ++ +..+..|.||||+|+ ..++.+++++|++.|... +.
T Consensus 103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~ 178 (276)
T 4hbd_A 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV---DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AK 178 (276)
T ss_dssp HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CC
T ss_pred cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC---CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cc
Confidence 378899999999999999999999999999998 54 556777999999999 668999999999999876 77
Q ss_pred ccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHH-cCCCccccccCCCcHHHHH
Q 025876 78 LDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS-ANFDSALVKFHGDTVLHFK 156 (247)
Q Consensus 78 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~g~t~l~~A 156 (247)
.+..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++ .|++++..|..|.||||+|
T Consensus 179 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A 257 (276)
T 4hbd_A 179 ASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257 (276)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH
Confidence 8899999999999999999999999999998 7899999999999999999999999999 8999999999999999999
Q ss_pred HhcCCcceeeccccccc
Q 025876 157 AEHLSLCTQRLPSNYAA 173 (247)
Q Consensus 157 ~~~~~~~~~~~l~~~~~ 173 (247)
+..|+.+++++|++...
T Consensus 258 ~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 258 LDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHTCHHHHHHHHHHCC
T ss_pred HHcCCHHHHHHHHhccC
Confidence 99999999999887643
No 61
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=3.3e-32 Score=220.99 Aligned_cols=176 Identities=16% Similarity=0.036 Sum_probs=142.9
Q ss_pred CCccc-cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCC---HHHHHHHHhcC-Ccchhc
Q 025876 3 IGARE-HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGH---LDFTKALLNHK-PELAKE 77 (247)
Q Consensus 3 ~~~~~-~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~Ll~~~-~~~~~~ 77 (247)
.|+|. +|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+ .++++.|++.+ .++ +.
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~-~~ 196 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-IL 196 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG-GE
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc-cC
Confidence 56777 8999999999999999999999999999887 5667889999999999998 67777887776 444 88
Q ss_pred ccCCCCcHHHHHHh----cCCHHHHHHHHHc--------------------CCccccccCCCCCcHHHHHHhcCcHHHHH
Q 025876 78 LDSLKHSPLHLAAA----EGHVQIVKELLLA--------------------NKDACLVADQDGRIPLHLAAMRGRVEVVQ 133 (247)
Q Consensus 78 ~~~~g~t~l~~A~~----~g~~~~~~~Ll~~--------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 133 (247)
.|..|.||||+|+. .|+.+++++|++. ++++ +..+..|+||||+|+. ++
T Consensus 197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~~ 269 (327)
T 1sw6_A 197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD------LK 269 (327)
T ss_dssp ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HH
T ss_pred CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH------HH
Confidence 89999999999999 8999999999987 6666 6788999999999985 88
Q ss_pred HHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhh
Q 025876 134 ELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIET 191 (247)
Q Consensus 134 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~ 191 (247)
+|+++ +++.+|..|+||||+|+..|+.+++++|++.++.. ..+..|.||||+|++.
T Consensus 270 ~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 270 WIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred HHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 88887 68888999999999999999999999998887644 5566899999999854
No 62
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.4e-32 Score=213.80 Aligned_cols=167 Identities=17% Similarity=0.092 Sum_probs=147.9
Q ss_pred CCCCchHHHHHH---HcCCHHHHHHHHhcCchhhh--------ccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhc
Q 025876 9 DEDSTHKLYEAS---LRGSVRSLNTLMQSDSLILR--------KTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKE 77 (247)
Q Consensus 9 ~~~~~~~L~~A~---~~g~~~~~~~Ll~~~~~~~~--------~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~ 77 (247)
|..|.||||+|+ +.|+.+++++|++.+++... ....|..|.||||+|+..|+.+++++|++.|+++ +.
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~ 121 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HA 121 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Cc
Confidence 367999999999 78999999999998765311 1334457999999999999999999999999998 66
Q ss_pred cc--------------CCCCcHHHHHHhcCCHHHHHHHHH---cCCccccccCCCCCcHHHHHHhcCc---------HHH
Q 025876 78 LD--------------SLKHSPLHLAAAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAMRGR---------VEV 131 (247)
Q Consensus 78 ~~--------------~~g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~ 131 (247)
.+ ..|.||||+|+..|+.+++++|++ .|+++ +..|..|+||||+|+..++ .++
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~ 200 (260)
T 3jxi_A 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKM 200 (260)
T ss_dssp CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence 66 589999999999999999999999 88988 7899999999999998877 799
Q ss_pred HHHHHHcCCCc-------cccccCCCcHHHHHHhcCCcceeeccccccccccc
Q 025876 132 VQELISANFDS-------ALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDW 177 (247)
Q Consensus 132 v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~ 177 (247)
+++|+++|+++ +..|..|.||||+|+..|+.+++++|++++.....
T Consensus 201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 99999999988 67899999999999999999999999988875433
No 63
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=1.4e-32 Score=219.14 Aligned_cols=164 Identities=12% Similarity=0.012 Sum_probs=149.9
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCC-CcHHH
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK-HSPLH 87 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~ 87 (247)
..+|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+..| .||||
T Consensus 59 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~ 134 (285)
T 3kea_A 59 LLENEFPLHQAATLEDTKIVKILLFSGLDD---SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFY 134 (285)
T ss_dssp CCTTCCHHHHHTTSSSCHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHH
Confidence 335999999999999999999999999987 556778999999999999999999999999998 8889999 89999
Q ss_pred HHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcH-HHHHHhcCCcceee
Q 025876 88 LAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTV-LHFKAEHLSLCTQR 166 (247)
Q Consensus 88 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~ 166 (247)
+|+..|+.+++++|+..+++.. ....|+||||+|+..|+.+++++|+++|++++..+..|.|| ||+|+..++.++++
T Consensus 135 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~ 212 (285)
T 3kea_A 135 HAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212 (285)
T ss_dssp HHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCccc--cccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence 9999999999999999998762 22389999999999999999999999999999999999998 99999999999999
Q ss_pred cccccccccccc
Q 025876 167 LPSNYAAWLDWT 178 (247)
Q Consensus 167 ~l~~~~~~~~~~ 178 (247)
+|++.++.....
T Consensus 213 ~Ll~~gad~~~~ 224 (285)
T 3kea_A 213 ALFKYDINIYSA 224 (285)
T ss_dssp HHTTSCBCSTTT
T ss_pred HHHHcCCCCCCC
Confidence 999988765443
No 64
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1e-31 Score=212.60 Aligned_cols=166 Identities=19% Similarity=0.185 Sum_probs=148.4
Q ss_pred ccCCCCchHHHHHHHc---CCHHHHHHHHhcCchhh------hc--cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch
Q 025876 7 EHDEDSTHKLYEASLR---GSVRSLNTLMQSDSLIL------RK--TSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75 (247)
Q Consensus 7 ~~~~~~~~~L~~A~~~---g~~~~~~~Ll~~~~~~~------~~--~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~ 75 (247)
..|..|.||||+|+.. |+.+++++|++.+++.. +. ...|..|.||||+|+..|+.+++++|++.|+++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~- 127 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV- 127 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-
Confidence 3478999999999987 99999999999986531 11 124567999999999999999999999999998
Q ss_pred hcccC--------------CCCcHHHHHHhcCCHHHHHHHHH---cCCccccccCCCCCcHHHHHHhcCc---------H
Q 025876 76 KELDS--------------LKHSPLHLAAAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAMRGR---------V 129 (247)
Q Consensus 76 ~~~~~--------------~g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~ 129 (247)
+..+. .|.||||+|+..|+.+++++|++ .|+++ +..|..|+||||+|+..|+ .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 206 (273)
T 2pnn_A 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVT 206 (273)
T ss_dssp TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence 66665 79999999999999999999999 88988 7899999999999999888 8
Q ss_pred HHHHHHHHcCCCcc-------ccccCCCcHHHHHHhcCCcceeecccccccc
Q 025876 130 EVVQELISANFDSA-------LVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW 174 (247)
Q Consensus 130 ~~v~~Ll~~~~~~~-------~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 174 (247)
+++++|+++|++++ ..|..|.||||+|+..|+.+++++|++.++.
T Consensus 207 ~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence 99999999999886 4799999999999999999999999998873
No 65
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.8e-31 Score=198.41 Aligned_cols=164 Identities=18% Similarity=0.278 Sum_probs=148.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHH
Q 025876 10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA 89 (247)
Q Consensus 10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A 89 (247)
..+.++|+.|+..|+.+++++|++.++.. .+..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 45789999999999999999999986532 2456777999999999999999999999999998 88899999999999
Q ss_pred HhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccc
Q 025876 90 AAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPS 169 (247)
Q Consensus 90 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 169 (247)
+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++.+++++|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q 025876 170 NYAAWLDW 177 (247)
Q Consensus 170 ~~~~~~~~ 177 (247)
+.+.....
T Consensus 159 ~~g~~~~~ 166 (179)
T 3f6q_A 159 KMGQNLNR 166 (179)
T ss_dssp HTTCCCSC
T ss_pred HhhcCccc
Confidence 88875543
No 66
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=9.5e-32 Score=208.97 Aligned_cols=179 Identities=17% Similarity=0.124 Sum_probs=131.0
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 88 (247)
+..|.||||.|++.|+.+.++.|++.|.++.. +..|.||||.|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~----~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHN 76 (239)
T ss_dssp ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCccc----CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence 34689999999999999999999999987732 345899999999999999999999999987 8889999999999
Q ss_pred HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCC-cHHHHH--HhcCCccee
Q 025876 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGD-TVLHFK--AEHLSLCTQ 165 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~ 165 (247)
|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++..+..|. ||||+| +..|+.+++
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 99999999999999999998 78999999999999999999999999999999999988777 999999 788999999
Q ss_pred eccccccccccc----------cCCccchhhHHHhhcc
Q 025876 166 RLPSNYAAWLDW----------TLSICYPKHLTIETRG 193 (247)
Q Consensus 166 ~~l~~~~~~~~~----------~~~g~~pl~~a~~~~~ 193 (247)
++|+..++.... +..+.+|.++++..+.
T Consensus 156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999887765443 4456788888775554
No 67
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.2e-30 Score=196.09 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=144.3
Q ss_pred cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 025876 42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLH 121 (247)
Q Consensus 42 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~ 121 (247)
+..|..|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 446777999999999999999999999999987 788999999999999999999999999999988 788999999999
Q ss_pred HHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeecc
Q 025876 122 LAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMM 200 (247)
Q Consensus 122 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l 200 (247)
+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... ..+..|.||+|+|+..+....+..|
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L 186 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877644 4566899999999987776665555
Q ss_pred cc
Q 025876 201 PS 202 (247)
Q Consensus 201 ~~ 202 (247)
++
T Consensus 187 l~ 188 (192)
T 2rfm_A 187 TE 188 (192)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 68
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=4.2e-30 Score=186.83 Aligned_cols=150 Identities=25% Similarity=0.252 Sum_probs=116.2
Q ss_pred CCCCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccC
Q 025876 1 MEIGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDS 80 (247)
Q Consensus 1 ~~~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~ 80 (247)
||-..+..++.|.|+||+|+..|+.+++++|++.+.++ +..|..|.||||+|+ .|+.+++++|++.|+++ +..+.
T Consensus 1 mep~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~ 75 (156)
T 1bi7_B 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADP 75 (156)
T ss_dssp ---------CCSTTHHHHHHHHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCT
T ss_pred CCCCccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCC
Confidence 45667788899999999999999999999999998876 556778999999985 89999999999999998 88899
Q ss_pred CCCc-HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876 81 LKHS-PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFK 156 (247)
Q Consensus 81 ~g~t-~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A 156 (247)
.|.| |||+|+..|+.+++++|+++|+++ +..+..|+||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus 76 ~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 76 ATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9999 999999999999999999999998 78899999999999999999999999999999999999999987643
No 69
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=4e-30 Score=187.86 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=142.5
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 127 (247)
..||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+. |+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 679999999999999999999999988 8889999999999999 9999999999999988 788999999999999999
Q ss_pred cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc--ccccCCccchhhHHHhhcccceeeccccCC
Q 025876 128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW--LDWTLSICYPKHLTIETRGAVAILMMPSVG 204 (247)
Q Consensus 128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~--~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 204 (247)
+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ...+..|.||+|+|+..+....+..|++.+
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999988774 566668999999999888877777766654
No 70
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.2e-29 Score=186.39 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=139.1
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 127 (247)
|.||||.|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence 889999999999999999999999887 888999999999999999999999999999988 788999999999999999
Q ss_pred cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccc
Q 025876 128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMP 201 (247)
Q Consensus 128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~ 201 (247)
+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... ..+..|.||+|+|+..+....+..|.
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999999999999999999999998877644 45668999999999877655554443
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.8e-29 Score=185.92 Aligned_cols=156 Identities=26% Similarity=0.271 Sum_probs=141.7
Q ss_pred cCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 025876 46 SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM 125 (247)
Q Consensus 46 ~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 125 (247)
..+.++|+.|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 89 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAAL 89 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 34789999999999999999999999998 888999999999999999999999999999988 7889999999999999
Q ss_pred cCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccC
Q 025876 126 RGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSV 203 (247)
Q Consensus 126 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 203 (247)
.|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... ..+..|.||+|+|+..+....+..|++.
T Consensus 90 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998877644 4556899999999988877666665543
No 72
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=3.2e-29 Score=177.97 Aligned_cols=133 Identities=26% Similarity=0.344 Sum_probs=114.3
Q ss_pred CCccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCC-
Q 025876 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL- 81 (247)
Q Consensus 3 ~~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~- 81 (247)
.+++..|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+. |+.+++++|++.|+++ +..+..
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~ 77 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP---NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPAT 77 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc---CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCC
Confidence 467888888999999999999999999999888766 4556778999999999 9999999999988887 777888
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 025876 82 KHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141 (247)
Q Consensus 82 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 141 (247)
|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..++.+++++|+++|++
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 889999999999999999999888887 67888899999999998999999999887764
No 73
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.2e-28 Score=181.76 Aligned_cols=143 Identities=22% Similarity=0.225 Sum_probs=128.7
Q ss_pred ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (247)
Q Consensus 5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t 84 (247)
++.+|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.|
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 104 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP---HILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGT 104 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCC
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 6778899999999999999999999999999877 556778999999999999999999999999998 888999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcH
Q 025876 85 PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTV 152 (247)
Q Consensus 85 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~ 152 (247)
|||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++++++....+..|.||
T Consensus 105 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 105 PLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 999999999999999999999998 7899999999999999999999999999999888888888776
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=2.5e-29 Score=184.23 Aligned_cols=157 Identities=22% Similarity=0.191 Sum_probs=137.2
Q ss_pred ccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 025876 45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA 124 (247)
Q Consensus 45 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 124 (247)
|+.|.++||.|+..|+.++++.|++.+....+..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence 4458899999999999999999999665444677888999999999999999999999999998 788999999999999
Q ss_pred hcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc-ccccCCccchhhHHHhhcccceeeccccC
Q 025876 125 MRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW-LDWTLSICYPKHLTIETRGAVAILMMPSV 203 (247)
Q Consensus 125 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~-~~~~~~g~~pl~~a~~~~~~~~~~~l~~~ 203 (247)
..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ...+..|.||+|+|.. +....+..|...
T Consensus 84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~ 162 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD 162 (165)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999887764 4556689999999875 444444444443
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=5e-29 Score=180.91 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=138.0
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCC-cchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhc
Q 025876 48 RETPLHISALLGHLDFTKALLNHKP-ELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~-~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 126 (247)
+.||||.|+..|+.+++++|++... ++ +..+..|.||||+ +..|+.+++++|++.|+++ +..+..|+||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 5689999999999999999999832 54 7889999999999 9999999999999999998 78899999999999999
Q ss_pred CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeecccc
Q 025876 127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPS 202 (247)
Q Consensus 127 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~ 202 (247)
|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++..+....+..|.||+|+|+..+....+..|++
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998886666777789999999998877766665543
No 76
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=1.1e-29 Score=206.15 Aligned_cols=182 Identities=11% Similarity=-0.007 Sum_probs=143.8
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCchhhhccc-cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876 14 HKLYEASLRGSVRSLNTLMQSDSLILRKTS-LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE 92 (247)
Q Consensus 14 ~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 92 (247)
+.+|.|+..+..++++.|++.+.++ +. .|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dv---n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNL---NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKS 174 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCS---CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCc---ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHh
Confidence 3458888888899999999999877 44 5778999999999999999999999999998 88999999999999999
Q ss_pred CC---HHHHHHHHHcCCccccccCCCCCcHHHHHHh----cCcHHHHHHHHHc--------------------CCCcccc
Q 025876 93 GH---VQIVKELLLANKDACLVADQDGRIPLHLAAM----RGRVEVVQELISA--------------------NFDSALV 145 (247)
Q Consensus 93 g~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~ 145 (247)
|+ .++++.|++.+....+..+..|+||||+|+. .|+.+++++|++. +++++..
T Consensus 175 g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 254 (327)
T 1sw6_A 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDK 254 (327)
T ss_dssp SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------
T ss_pred cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccc
Confidence 98 6888888888744337899999999999999 8999999999986 8999999
Q ss_pred ccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeeccccCCCh
Q 025876 146 KFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVGGI 206 (247)
Q Consensus 146 ~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~~~ 206 (247)
+..|.||||.|+. +++|+.. +....+..|+||||+|+..+....+..|++.+..
T Consensus 255 ~~~g~t~L~~a~~------~~~Ll~~-~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad 308 (327)
T 1sw6_A 255 NGERKDSILENLD------LKWIIAN-MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308 (327)
T ss_dssp -----CHHHHHCS------HHHHHHH-TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred cccCCChhHHHHH------HHHHHHh-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999985 7777776 4666777899999999998887777777766443
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=6.8e-29 Score=179.78 Aligned_cols=149 Identities=26% Similarity=0.252 Sum_probs=135.4
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 127 (247)
..++||.|+..|+.+++++|++.|.++ + .+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 458999999999999999999999876 3 5889999999999999999999999999988 788999999999999999
Q ss_pred cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeec
Q 025876 128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILM 199 (247)
Q Consensus 128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~ 199 (247)
+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... ..+..|.||+|+|+..+....+..
T Consensus 79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~ 151 (153)
T 1awc_B 79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151 (153)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999998877644 456689999999998777655443
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=4e-30 Score=198.48 Aligned_cols=197 Identities=13% Similarity=0.028 Sum_probs=156.8
Q ss_pred HHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCc
Q 025876 28 LNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKD 107 (247)
Q Consensus 28 ~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~ 107 (247)
++.|+++++........+..+.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 46788888877655556667889999999999999999999999988 88999999999999999999999999999999
Q ss_pred cccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccc-cCCCcHHHHH--HhcCCcceeecccccccccc-ccCCccc
Q 025876 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK-FHGDTVLHFK--AEHLSLCTQRLPSNYAAWLD-WTLSICY 183 (247)
Q Consensus 108 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~l~~~~~~~~-~~~~g~~ 183 (247)
+ +..|..|+||||+|+..|+.+++++|++.|++++..+ ..|.||||+| +..++.+++++|++.+.... .+..|.+
T Consensus 80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 158 (229)
T 2vge_A 80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY 158 (229)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence 8 7889999999999999999999999999999999996 6999999999 99999999999998876544 4446788
Q ss_pred hhhHHHhhccccee--------eccccCCChhhhHHhhhhhhhhhhccccC
Q 025876 184 PKHLTIETRGAVAI--------LMMPSVGGITFFQESFAERSLIVVTEEVD 226 (247)
Q Consensus 184 pl~~a~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (247)
|++.++.......+ ....+..|.+++..+...+...+++...-
T Consensus 159 ~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l 209 (229)
T 2vge_A 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF 209 (229)
T ss_dssp ESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred HHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence 98865544332211 22345557777777777777776665433
No 79
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=3.6e-29 Score=186.91 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=140.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCH----HHHHHHHhcCCcchhcccCCCCcHHH
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHL----DFTKALLNHKPELAKELDSLKHSPLH 87 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~g~t~l~ 87 (247)
+.++|+.|++.|+.+.++.++..+..... +..|+||||+|+..|+. +++++|++.|+++ +.+|..|.||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~----~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE----SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHH----HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccccc----ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 56789999999999999999987754311 24599999999999975 5999999999998 889999999999
Q ss_pred HHHhcCC------HHHHHHHHHcCCccccccCCCCC-cHHHHHHhcC-----cHHHHHHHHH-cCCCccccccCCCcHHH
Q 025876 88 LAAAEGH------VQIVKELLLANKDACLVADQDGR-IPLHLAAMRG-----RVEVVQELIS-ANFDSALVKFHGDTVLH 154 (247)
Q Consensus 88 ~A~~~g~------~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~~~~~~~~~~~g~t~l~ 154 (247)
+|+..|+ .+++++|+.+|+++ +..|..|+ ||||+|+..+ ..+++++|++ +|++++.+|..|.||||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~ 159 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence 9999987 68899999999999 78999999 9999999844 4679999999 99999999999999999
Q ss_pred HHHhcCCcceeecccccccc
Q 025876 155 FKAEHLSLCTQRLPSNYAAW 174 (247)
Q Consensus 155 ~A~~~~~~~~~~~l~~~~~~ 174 (247)
+|+..++.+++++|.++...
T Consensus 160 ~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 160 FVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999877653
No 80
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.3e-28 Score=182.83 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=137.9
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 127 (247)
+.++||.|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcC
Confidence 7899999999999999999999865545889999999999999999999999999999998 788999999999999999
Q ss_pred cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHHHhhcccceeeccccCC
Q 025876 128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLTIETRGAVAILMMPSVG 204 (247)
Q Consensus 128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 204 (247)
+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+... ..+..|.||+++|+.......+..+.+.+
T Consensus 84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998877654 45668999999998766655555554443
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=2e-28 Score=173.84 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=122.2
Q ss_pred cccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCC-CCcHH
Q 025876 42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQD-GRIPL 120 (247)
Q Consensus 42 ~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~-g~t~L 120 (247)
+..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+. |+.+++++|++.++++ +..+.. |+|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence 456777999999999999999999999999988 8889999999999999 9999999999999998 688888 99999
Q ss_pred HHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876 121 HLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA 173 (247)
Q Consensus 121 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 173 (247)
|+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999988764
No 82
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.95 E-value=7.3e-27 Score=163.08 Aligned_cols=126 Identities=36% Similarity=0.526 Sum_probs=107.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA 90 (247)
Q Consensus 11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 90 (247)
+|.||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHH
Confidence 4788899999999999999988888766 455667888999999888999999988888887 777888888999998
Q ss_pred hcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 025876 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141 (247)
Q Consensus 91 ~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 141 (247)
..|+.+++++|++.++++ +..+..|+|||++|+..|+.+++++|+++|++
T Consensus 77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 888888889888888887 67788888899998888888888888888764
No 83
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=5e-27 Score=166.63 Aligned_cols=126 Identities=27% Similarity=0.421 Sum_probs=90.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 88 (247)
...+.|+||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~ 86 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHL 86 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 345677777777777777777777777665 444566777777777777777777777777776 6667777777777
Q ss_pred HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q 025876 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 139 (247)
|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|++.|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 77777777777777777776 566777777777777777777777777653
No 84
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=9.5e-30 Score=209.29 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=130.0
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcch--hcccCCCCcH
Q 025876 8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA--KELDSLKHSP 85 (247)
Q Consensus 8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~--~~~~~~g~t~ 85 (247)
++.++.||||+|++.|+.+++++|++.++........+..|.||||+|+..|+.+++++|++.|+++. +..+.. .||
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 45567899999999999999999999987332222334558899999999999999999999997420 222222 899
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccc--cCCCCCcHHHHHH-hcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 86 LHLAAAEGHVQIVKELLLANKDACLV--ADQDGRIPLHLAA-MRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 86 l~~A~~~g~~~~~~~Ll~~~~~~~~~--~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
||+|+..|+.+++++|+++|+++ +. .+..|+||||+|+ ..|+.+++++|++.|+ .|.|||++|+..|+.
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCH
Confidence 99999999999999999999987 44 6788999999999 9999999999998653 278999999999999
Q ss_pred ceeecccccccc
Q 025876 163 CTQRLPSNYAAW 174 (247)
Q Consensus 163 ~~~~~l~~~~~~ 174 (247)
+++++|++.++.
T Consensus 239 evv~lL~~~ga~ 250 (376)
T 2aja_A 239 YVNPFIARHVNR 250 (376)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHhcCcc
Confidence 999999877653
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=9.6e-28 Score=174.31 Aligned_cols=142 Identities=18% Similarity=0.112 Sum_probs=118.7
Q ss_pred cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCc-HHHH
Q 025876 44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRI-PLHL 122 (247)
Q Consensus 44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t-~L~~ 122 (247)
.+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+ .|+.+++++|++.|+++ +..+..|+| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 3556999999999999999999999999987 888999999999985 89999999999999998 789999999 9999
Q ss_pred HHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccc-cccCCccchhhHH
Q 025876 123 AAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWL-DWTLSICYPKHLT 188 (247)
Q Consensus 123 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~-~~~~~g~~pl~~a 188 (247)
|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++.. ..+..|.||.+.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999999999999999999999999999998887754 4455778877644
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=3.2e-27 Score=167.65 Aligned_cols=125 Identities=26% Similarity=0.305 Sum_probs=118.3
Q ss_pred cCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 025876 46 SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM 125 (247)
Q Consensus 46 ~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 125 (247)
..+.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF 89 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 34889999999999999999999999998 888999999999999999999999999999998 7889999999999999
Q ss_pred cCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccc
Q 025876 126 RGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYA 172 (247)
Q Consensus 126 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~ 172 (247)
.|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.|
T Consensus 90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999887654
No 87
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=7.6e-28 Score=186.93 Aligned_cols=172 Identities=16% Similarity=0.103 Sum_probs=143.2
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHH
Q 025876 10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA 89 (247)
Q Consensus 10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A 89 (247)
..|.|+||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|
T Consensus 35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A 110 (239)
T 1ycs_B 35 PLPLALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCA 110 (239)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHH
T ss_pred chhhHHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence 56799999999999999999999999876 566788999999999999999999999999998 88999999999999
Q ss_pred HhcCCHHHHHHHHHcCCccccccCCCCC-cHHHHH--HhcCcHHHHHHHHHcCCCcccc---------ccCCCcHHHHHH
Q 025876 90 AAEGHVQIVKELLLANKDACLVADQDGR-IPLHLA--AMRGRVEVVQELISANFDSALV---------KFHGDTVLHFKA 157 (247)
Q Consensus 90 ~~~g~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A--~~~~~~~~v~~Ll~~~~~~~~~---------~~~g~t~l~~A~ 157 (247)
+..|+.+++++|+++|+++ +..+..|. ||||+| +..|+.+++++|++.+++++.. +..+.++++++.
T Consensus 111 ~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~ 189 (239)
T 1ycs_B 111 ASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM 189 (239)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred HHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence 9999999999999999999 56676666 999999 7889999999999988777655 566888988888
Q ss_pred hcCCcceeecccccccc-------ccccCCccchhhHH
Q 025876 158 EHLSLCTQRLPSNYAAW-------LDWTLSICYPKHLT 188 (247)
Q Consensus 158 ~~~~~~~~~~l~~~~~~-------~~~~~~g~~pl~~a 188 (247)
..|. +++.+...... ...+..|.+|.++.
T Consensus 190 ~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv 225 (239)
T 1ycs_B 190 KEGD--CMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225 (239)
T ss_dssp CSSC--EEEECCCCTTSCSSEEEEEETTEEEEEEGGGE
T ss_pred cCCC--EEEEEEecCCCCCCEEEEEECCcEEEeehHHe
Confidence 8775 55555443322 12223466777663
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.2e-26 Score=161.91 Aligned_cols=124 Identities=40% Similarity=0.549 Sum_probs=119.0
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 127 (247)
|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHcC
Confidence 899999999999999999999999987 788999999999999999999999999999988 788999999999999999
Q ss_pred cHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876 128 RVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA 173 (247)
Q Consensus 128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 173 (247)
+.+++++|+++|++++..+..|.|||++|+..++.+++++|++.++
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999988765
No 89
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=6.8e-27 Score=166.06 Aligned_cols=123 Identities=26% Similarity=0.341 Sum_probs=65.6
Q ss_pred cCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 025876 46 SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM 125 (247)
Q Consensus 46 ~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 125 (247)
..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|+.
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 85 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAK 85 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHH
Confidence 34555555555555555555555555544 444555555555555555555555555555554 4455555555555555
Q ss_pred cCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccc
Q 025876 126 RGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSN 170 (247)
Q Consensus 126 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~ 170 (247)
.|+.+++++|+++|++++..|..|.||+++|+..+..++++++.+
T Consensus 86 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 555555555555555555555555555555555555555554443
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=7.5e-27 Score=165.86 Aligned_cols=130 Identities=27% Similarity=0.269 Sum_probs=117.4
Q ss_pred CccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCC
Q 025876 4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH 83 (247)
Q Consensus 4 ~~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~ 83 (247)
|+ .+|..|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.
T Consensus 3 d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~ 77 (137)
T 3c5r_A 3 DP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQND 77 (137)
T ss_dssp -C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGC
T ss_pred CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCC
Confidence 55 68899999999999999999999999999877 566788999999999999999999999999987 88899999
Q ss_pred cHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC
Q 025876 84 SPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139 (247)
Q Consensus 84 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 139 (247)
||||+|+..|+.+++++|++.|+++ +..|..|.|||++|+..+..+++++|.+.+
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 9999999999999999999999998 789999999999999999999988887643
No 91
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=6.5e-26 Score=181.71 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=113.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhc------ccCCCCcHHHHHHhc---CCHHHHHHHHHcCCccccccCCCCCc
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKE------LDSLKHSPLHLAAAE---GHVQIVKELLLANKDACLVADQDGRI 118 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~------~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t 118 (247)
..++|+.|+..|+.+.++.|++.|+++ +. .+..|.||||+|+.. |+.+++++|+..|+++ +..|..|+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 228 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 456789999999999888888888887 44 578888999999887 7888999999888888 678888999
Q ss_pred HHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcc
Q 025876 119 PLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRG 193 (247)
Q Consensus 119 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~ 193 (247)
|||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++.++. .|.||||+|+..+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-----~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-----TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-----TTSSCCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-----CCCChhHHHHhcCC
Confidence 99999999999999999998999888888899999999998899998888887765 57889999886543
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=3e-26 Score=170.75 Aligned_cols=137 Identities=19% Similarity=0.175 Sum_probs=79.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhccc-CCCCcHHHH
Q 025876 10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD-SLKHSPLHL 88 (247)
Q Consensus 10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~ 88 (247)
..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence 345666666666666666666666 4443 334455666666666666666666666666655 4444 556666666
Q ss_pred HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP 168 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 168 (247)
|+..|+.+++++|+++|+++ +..|..|+||||+|+..++. ..+.+||++|+..|..+++++|
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHH
Confidence 66666666666666666655 45566666666666543211 2345566666666666655555
Q ss_pred c
Q 025876 169 S 169 (247)
Q Consensus 169 ~ 169 (247)
.
T Consensus 179 ~ 179 (183)
T 3deo_A 179 E 179 (183)
T ss_dssp H
T ss_pred H
Confidence 4
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=3.4e-26 Score=178.14 Aligned_cols=139 Identities=19% Similarity=0.170 Sum_probs=111.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhccc-CCCCcHHHH
Q 025876 10 EDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD-SLKHSPLHL 88 (247)
Q Consensus 10 ~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~ 88 (247)
..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCT---TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCC---CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence 467888888888888888888888 6655 455677888888888888888888888888887 5555 778888888
Q ss_pred HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecc
Q 025876 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLP 168 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 168 (247)
|+..|+.+++++|+.+|+++ +..|..|+||||+|+..+. ...+.|||++|+..|+.+++++|
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L 179 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVL 179 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHH
Confidence 88888888888888888887 6788888888888875221 24568888888888888888877
Q ss_pred ccc
Q 025876 169 SNY 171 (247)
Q Consensus 169 ~~~ 171 (247)
...
T Consensus 180 ~~~ 182 (244)
T 3ui2_A 180 EGQ 182 (244)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 94
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.93 E-value=4.2e-26 Score=175.02 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=64.4
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHc-CCccccccCCCCCcHHHHHHhc
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLAAMR 126 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~ 126 (247)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+.. ++++ +..|..|+||||+|+..
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWK 150 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHH
T ss_pred cccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHc
Confidence 555555555555555555555555554 44555555555555555555555555555 4444 44555555555555555
Q ss_pred CcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccc
Q 025876 127 GRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAA 173 (247)
Q Consensus 127 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 173 (247)
|+.+++++|+++|++++..+..|.|||++|+..++.++++.+...++
T Consensus 151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 55555555555555555555555555555555555555555544443
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.93 E-value=1.1e-25 Score=156.92 Aligned_cols=107 Identities=25% Similarity=0.281 Sum_probs=62.1
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 127 (247)
|.||||+|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcC
Confidence 555555555555555555555555554 455555555555555555555555555555555 455555555666655555
Q ss_pred cHHHHHHHHHcCCCccccccCCCcHHHHH
Q 025876 128 RVEVVQELISANFDSALVKFHGDTVLHFK 156 (247)
Q Consensus 128 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A 156 (247)
+.+++++|+++|++++..|..|.|||++|
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 85 HVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 55566665555555555555555665555
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=1e-25 Score=167.85 Aligned_cols=137 Identities=25% Similarity=0.208 Sum_probs=120.5
Q ss_pred ccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccC-CCCCcHHHHH
Q 025876 45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLA 123 (247)
Q Consensus 45 ~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A 123 (247)
+..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..+ ..|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence 3458999999999999999999999 8887 889999999999999999999999999999998 5555 8999999999
Q ss_pred HhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHHhhcccceeecc
Q 025876 124 AMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMM 200 (247)
Q Consensus 124 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l 200 (247)
+..|+.+++++|+++|++++.+|..|.||||+|+..++.. .+.+|+++++..+....+..|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~----------------~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT----------------PKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTC----------------CCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCc----------------ccccHHHHHHHcCHHHHHHHH
Confidence 9999999999999999999999999999999999865542 456788888866655554444
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=3.7e-25 Score=154.20 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=105.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHH
Q 025876 9 DEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (247)
Q Consensus 9 ~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 88 (247)
+..|.|+||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 467899999999999999999999999876 566778999999999999999999999999998 8899999999999
Q ss_pred HHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHH
Q 025876 89 AAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV 131 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 131 (247)
|+..|+.+++++|++.++++ +..|..|+||||+|...+..++
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHHHH
Confidence 99999999999999999998 7899999999999954444433
No 98
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=4.6e-26 Score=170.06 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=119.2
Q ss_pred CccccC-CCCchHHHHHHHcCCH----HHHHHHHhcCchhhhccccccCCCcHHHHHHhcCC------HHHHHHHHhcCC
Q 025876 4 GAREHD-EDSTHKLYEASLRGSV----RSLNTLMQSDSLILRKTSLTSLRETPLHISALLGH------LDFTKALLNHKP 72 (247)
Q Consensus 4 ~~~~~~-~~~~~~L~~A~~~g~~----~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~------~~~~~~Ll~~~~ 72 (247)
+++..+ ..|+||||+|+..|+. +++++|++.|+++ +..|..|+||||+|+..|+ .+++++|++.|+
T Consensus 29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga 105 (186)
T 3t8k_A 29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI---KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105 (186)
T ss_dssp SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS---SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC
Confidence 455566 6799999999999985 5899999999988 6667889999999999987 688999999999
Q ss_pred cchhcccCCCC-cHHHHHHhcC-----CHHHHHHHHH-cCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccc
Q 025876 73 ELAKELDSLKH-SPLHLAAAEG-----HVQIVKELLL-ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSAL 144 (247)
Q Consensus 73 ~~~~~~~~~g~-t~l~~A~~~g-----~~~~~~~Ll~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 144 (247)
++ +.+|..|. ||||+|+..+ ..+++++|+. .|+++ +..|..|+||||+|+..|+.+++++|.++..+.+.
T Consensus 106 di-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 106 DI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp CS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred CC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 98 88999999 9999999954 3579999999 99999 79999999999999999999999999975443333
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=1.6e-25 Score=174.42 Aligned_cols=164 Identities=22% Similarity=0.149 Sum_probs=132.8
Q ss_pred chHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhc
Q 025876 13 THKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAE 92 (247)
Q Consensus 13 ~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 92 (247)
.++++.++..|+.+.+..+...+... +..|.||||+|+..|+.+++++|++ +.++ +..|..|.||||+|+..
T Consensus 16 ~~~~l~~~~~g~~~~~~~~~~~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~ 87 (244)
T 3ui2_A 16 AMEYLIEWKDGHSPSWVPSSYIAADV------VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGL 87 (244)
T ss_dssp EEEEEEEESSCCCCEEEEGGGSCHHH------HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHH
T ss_pred ccHHHHHHHcCCCccccccccccccc------ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHC
Confidence 33444444445544444433333322 2348999999999999999999999 8887 88999999999999999
Q ss_pred CCHHHHHHHHHcCCccccccC-CCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccc
Q 025876 93 GHVQIVKELLLANKDACLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNY 171 (247)
Q Consensus 93 g~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 171 (247)
|+.+++++|++.|+++ +..+ ..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.
T Consensus 88 g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~--------- 157 (244)
T 3ui2_A 88 GSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------- 157 (244)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT---------
T ss_pred CCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc---------
Confidence 9999999999999999 4555 8899999999999999999999999999999999999999999874332
Q ss_pred cccccccCCccchhhHHHhhcccceeeccc
Q 025876 172 AAWLDWTLSICYPKHLTIETRGAVAILMMP 201 (247)
Q Consensus 172 ~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~ 201 (247)
..+.+|+|+|+..+....+..|.
T Consensus 158 -------~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 158 -------TPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp -------CCCSSHHHHHHHHHHHHHHHHHH
T ss_pred -------cCCCCHHHHHHHcChHHHHHHHH
Confidence 46789999999877665555443
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=3.9e-25 Score=177.18 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=122.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCchhhhc---cccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcchhcccCCCCc
Q 025876 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRK---TSLTSLRETPLHISALL---GHLDFTKALLNHKPELAKELDSLKHS 84 (247)
Q Consensus 11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~---~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t 84 (247)
...++|+.|+..|+.+.+++|+..+.++... ...+..|.||||+|+.. |+.+++++|++.|+++ +..|..|.|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 3457899999999999999999999877331 01467799999999997 8999999999999998 889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCc
Q 025876 85 PLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSL 162 (247)
Q Consensus 85 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 162 (247)
|||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++ .|.||||+|+..|+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 999999999999999999999998 78999999999999999999999999997765 578999999988763
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.92 E-value=2.9e-25 Score=170.38 Aligned_cols=138 Identities=21% Similarity=0.267 Sum_probs=114.1
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhc-CCcchhcccCCCCcH
Q 025876 7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNH-KPELAKELDSLKHSP 85 (247)
Q Consensus 7 ~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~t~ 85 (247)
..+..|.|+||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++. |+++ +..|..|.||
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tp 143 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTA 143 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCH
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCH
Confidence 34667899999999999999999999999877 55677899999999999999999999998 8887 8899999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccccCC
Q 025876 86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVKFHG 149 (247)
Q Consensus 86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g 149 (247)
||+|+..|+.+++++|+..|+++ +..|..|+|||++|+..++.++++.|+..++.....+..+
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 99999999999999999999998 7899999999999999999999999999888877765543
No 102
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.91 E-value=5.7e-27 Score=192.79 Aligned_cols=176 Identities=14% Similarity=0.129 Sum_probs=142.4
Q ss_pred CchHHHHHHH-cCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcc--hhcccCCCCcHHHH
Q 025876 12 STHKLYEASL-RGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL--AKELDSLKHSPLHL 88 (247)
Q Consensus 12 ~~~~L~~A~~-~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~t~l~~ 88 (247)
+.+++++|.. .++.+.++++++++.+ +.||||+|+..|+.+++++|++.|+.. ....+..|.||||+
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~----------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~ 134 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIK----------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 134 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCC----------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCC----------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHH
Confidence 4557777776 5788888888877653 459999999999999999999998722 01235567899999
Q ss_pred HHhcCCHHHHHHHHHcCCcc--ccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccc--cccCCCcHHHHHH-hcCCcc
Q 025876 89 AAAEGHVQIVKELLLANKDA--CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSAL--VKFHGDTVLHFKA-EHLSLC 163 (247)
Q Consensus 89 A~~~g~~~~~~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~l~~A~-~~~~~~ 163 (247)
|+..|+.+++++|+++|++. .+..+.. +||||+|+..|+.+++++|+++|++++. .+..|.||||+|+ ..|+.+
T Consensus 135 Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e 213 (376)
T 2aja_A 135 AAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 213 (376)
T ss_dssp HHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence 99999999999999999741 0122222 8999999999999999999999999887 8889999999999 999999
Q ss_pred eeeccccccccccccCCccchhhHHHhhcccceeeccccCC
Q 025876 164 TQRLPSNYAAWLDWTLSICYPKHLTIETRGAVAILMMPSVG 204 (247)
Q Consensus 164 ~~~~l~~~~~~~~~~~~g~~pl~~a~~~~~~~~~~~l~~~~ 204 (247)
++++|++.++. |.||+|.|+..+....+..|.+.+
T Consensus 214 iv~~Ll~~ga~------~~taL~~Aa~~g~~evv~lL~~~g 248 (376)
T 2aja_A 214 VINFLLDCPVM------LAYAEIHEFEYGEKYVNPFIARHV 248 (376)
T ss_dssp HHHHHTTSHHH------HHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred HHHHHHhCCCc------cchHHHHHHHCCCHHHHHHHHhcC
Confidence 99999987643 899999999888877666665543
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=2.5e-23 Score=177.73 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=116.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCchhhhc---cccccCCCcHHHHHHh---cCCHHHHHHHHhcCCcchhcccCCCCcH
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDSLILRK---TSLTSLRETPLHISAL---LGHLDFTKALLNHKPELAKELDSLKHSP 85 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~---~~~~~~g~t~L~~A~~---~g~~~~~~~Ll~~~~~~~~~~~~~g~t~ 85 (247)
..+.||.|+..|+.+.++.|++.|++++.. ...|..|.||||+|+. .|+.+++++|++.|+++ +..|..|.||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcH
Confidence 347899999999999999999999887432 1226679999999976 89999999999999998 8899999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCCccccc
Q 025876 86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSALVK 146 (247)
Q Consensus 86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 146 (247)
||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++++...
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~ 270 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFP 270 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999998 7899999999999999999999999999999987743
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.90 E-value=7.9e-24 Score=167.75 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=137.9
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcCch-------hh---------------hc-cc-----cccCCCcHHHHHHhcC
Q 025876 8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSL-------IL---------------RK-TS-----LTSLRETPLHISALLG 59 (247)
Q Consensus 8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~-------~~---------------~~-~~-----~~~~g~t~L~~A~~~g 59 (247)
.|..+.+.++.+...|+....+.+...-+. .. .. .. .+....++|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 466788899999999987776665432110 00 00 00 0011246899999999
Q ss_pred CHHHHHHHHhcCCcch-----hcccCCCCcHHHHHHhc---CCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHH
Q 025876 60 HLDFTKALLNHKPELA-----KELDSLKHSPLHLAAAE---GHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV 131 (247)
Q Consensus 60 ~~~~~~~Ll~~~~~~~-----~~~~~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 131 (247)
+.+.++.++..|.++. +..+..|.||||+|+.. |+.+++++|+++|+++ +..|..|+||||+|+..|+.++
T Consensus 142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~ 220 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAEC 220 (278)
T ss_dssp CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence 9999999999998852 34488899999999999 8999999999999998 7899999999999999999999
Q ss_pred HHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccc
Q 025876 132 VQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAW 174 (247)
Q Consensus 132 v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 174 (247)
+++|+++|++++.+|..|.||||+|+..|+.+++++|++.++.
T Consensus 221 v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999988763
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.90 E-value=3e-23 Score=170.05 Aligned_cols=144 Identities=22% Similarity=0.228 Sum_probs=90.6
Q ss_pred CCCchHHHHHHHc-CCHHHHHHHHhcCchhhhccccc--cCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876 10 EDSTHKLYEASLR-GSVRSLNTLMQSDSLILRKTSLT--SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86 (247)
Q Consensus 10 ~~~~~~L~~A~~~-g~~~~~~~Ll~~~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l 86 (247)
..+.|+||.|+.. |+.+++++|++.|++++ ..+ ..|.||||+|+..|+.+++++|++.|+++ +..|..|.|||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn---~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpL 272 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVN---WVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL 272 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT---CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCC---ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence 3455677777777 77777777777777652 233 55777777777777777777777777776 66777777777
Q ss_pred HHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC---CCccccccCCCcHHHHHHh
Q 025876 87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN---FDSALVKFHGDTVLHFKAE 158 (247)
Q Consensus 87 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~g~t~l~~A~~ 158 (247)
|+|+..|+.+++++|+.+|+++ +..|..|+||||+|+..|+.+++++|+..+ .+....+..+.|+++.+..
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 7777777777777777777777 567777777777777777777777777643 2223334455666655543
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=1.7e-22 Score=160.06 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=117.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCchhhhc---cccccCCCcHHHHHHhc---CCHHHHHHHHhcCCcchhcccCCCCcH
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDSLILRK---TSLTSLRETPLHISALL---GHLDFTKALLNHKPELAKELDSLKHSP 85 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~---~~~~~~g~t~L~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~t~ 85 (247)
..++|+.|+..|+.+.++.++..+.+.... ...|..|.||||+|+.. |+.+++++|++.|+++ +..|..|.||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~Tp 208 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCH
Confidence 457899999999999999999999875321 33467799999999999 8999999999999998 8899999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcCCC
Q 025876 86 LHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141 (247)
Q Consensus 86 l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 141 (247)
||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999998 78999999999999999999999999998764
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.5e-22 Score=133.88 Aligned_cols=91 Identities=45% Similarity=0.674 Sum_probs=64.0
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhcC
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 127 (247)
|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 667777777777777777777777666 666677777777777777777777777777666 566677777777777777
Q ss_pred cHHHHHHHHHcCC
Q 025876 128 RVEVVQELISANF 140 (247)
Q Consensus 128 ~~~~v~~Ll~~~~ 140 (247)
+.+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 7777777776665
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=4.3e-23 Score=176.26 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=116.9
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCcchhcc------cCCCCcHHHHHHh---cCCHHHHHHHHHcCCccccccCCCCCc
Q 025876 48 RETPLHISALLGHLDFTKALLNHKPELAKEL------DSLKHSPLHLAAA---EGHVQIVKELLLANKDACLVADQDGRI 118 (247)
Q Consensus 48 g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~------~~~g~t~l~~A~~---~g~~~~~~~Ll~~~~~~~~~~~~~g~t 118 (247)
..+.||.|+..|+.+.++.|++.|+++ +.. +..|.||||+|+. .|+.+++++|++.|+++ +..|..|+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCc
Confidence 346799999999999999999999987 555 8899999999976 89999999999999999 789999999
Q ss_pred HHHHHHhcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeeccccccccccccCCccchhhHHH
Q 025876 119 PLHLAAMRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLDWTLSICYPKHLTI 189 (247)
Q Consensus 119 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~~~~g~~pl~~a~ 189 (247)
|||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.++... .+|+|.+.
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-----~~~~h~~~ 275 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF-----AFPLHVDY 275 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-----CCcceeec
Confidence 9999999999999999999999999999999999999999999999999999887643 35677654
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.88 E-value=7.4e-23 Score=140.70 Aligned_cols=108 Identities=32% Similarity=0.401 Sum_probs=80.4
Q ss_pred cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH
Q 025876 44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA 123 (247)
Q Consensus 44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A 123 (247)
.|..|.||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.++++ +..+..|+||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence 3555777777777777777777777777776 667777777777777777777777777777776 56777777888888
Q ss_pred HhcCcHHHHHHHHHcCCCccccccCCCcHH
Q 025876 124 AMRGRVEVVQELISANFDSALVKFHGDTVL 153 (247)
Q Consensus 124 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l 153 (247)
+..++.+++++|+++|++++..+..|.+|-
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 777777888888777777777777777663
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=4.5e-22 Score=131.53 Aligned_cols=93 Identities=31% Similarity=0.457 Sum_probs=86.1
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHH
Q 025876 11 DSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAA 90 (247)
Q Consensus 11 ~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 90 (247)
+|+||||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence 4899999999999999999999999887 566788999999999999999999999999998 889999999999999
Q ss_pred hcCCHHHHHHHHHcCCc
Q 025876 91 AEGHVQIVKELLLANKD 107 (247)
Q Consensus 91 ~~g~~~~~~~Ll~~~~~ 107 (247)
..|+.+++++|++.|++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999998863
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=1.6e-22 Score=165.70 Aligned_cols=140 Identities=17% Similarity=0.068 Sum_probs=117.5
Q ss_pred CCcHHHHHHhc-CCHHHHHHHHhcCCcchhccc--CCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 025876 48 RETPLHISALL-GHLDFTKALLNHKPELAKELD--SLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA 124 (247)
Q Consensus 48 g~t~L~~A~~~-g~~~~~~~Ll~~~~~~~~~~~--~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 124 (247)
+.++||.|+.. |+.+++++|++.|+++ +..+ ..|.||||+|+..|+.+++++|+.+|+++ +..|..|+||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 55799999999 9999999999999998 6667 88999999999999999999999999999 789999999999999
Q ss_pred hcCcHHHHHHHHHcCCCccccccCCCcHHHHHHhcCCcceeecccccccccc----ccCCccchhhHHH
Q 025876 125 MRGRVEVVQELISANFDSALVKFHGDTVLHFKAEHLSLCTQRLPSNYAAWLD----WTLSICYPKHLTI 189 (247)
Q Consensus 125 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~----~~~~g~~pl~~a~ 189 (247)
..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+.... ....+.|+++...
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999987664322 1223455555544
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.87 E-value=4.4e-22 Score=136.78 Aligned_cols=109 Identities=24% Similarity=0.296 Sum_probs=99.5
Q ss_pred ccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHH
Q 025876 7 EHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86 (247)
Q Consensus 7 ~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l 86 (247)
.+|..|.|+||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHH
Confidence 47889999999999999999999999999876 556788999999999999999999999999998 88899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCCccccccCCCCCcHH
Q 025876 87 HLAAAEGHVQIVKELLLANKDACLVADQDGRIPL 120 (247)
Q Consensus 87 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L 120 (247)
|+|+..|+.+++++|+++|+++ +..+..|++|-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 9999999999999999999999 78888888874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.80 E-value=2.7e-19 Score=121.86 Aligned_cols=90 Identities=28% Similarity=0.375 Sum_probs=56.0
Q ss_pred cccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCcHHHHHHhcCCHHHHHHHHHcCCccccccCCCCCcHHHHH
Q 025876 44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAAAEGHVQIVKELLLANKDACLVADQDGRIPLHLA 123 (247)
Q Consensus 44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A 123 (247)
.|.+|.|+||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|+..|+++ +..|..|+||||+|
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS 97 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence 3444666666666666666666666666655 555666666666666666666666666666655 45666666666666
Q ss_pred HhcCcHHHHHHH
Q 025876 124 AMRGRVEVVQEL 135 (247)
Q Consensus 124 ~~~~~~~~v~~L 135 (247)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 666666666654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=5e-19 Score=120.51 Aligned_cols=93 Identities=24% Similarity=0.368 Sum_probs=82.9
Q ss_pred ccccCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCcchhcccCCCCc
Q 025876 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (247)
Q Consensus 5 ~~~~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t 84 (247)
....|.+|.|+||+|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++.|+++ +..|..|.|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t 92 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKT 92 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCc
Confidence 4556788999999999999999999999999877 556778999999999999999999999999997 889999999
Q ss_pred HHHHHHhcCCHHHHHHH
Q 025876 85 PLHLAAAEGHVQIVKEL 101 (247)
Q Consensus 85 ~l~~A~~~g~~~~~~~L 101 (247)
|||+|+..|+.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999976
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=55.11 E-value=11 Score=19.26 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=11.6
Q ss_pred HHHHHhcCCHHHHHHHH
Q 025876 86 LHLAAAEGHVQIVKELL 102 (247)
Q Consensus 86 l~~A~~~g~~~~~~~Ll 102 (247)
+..||+.|+++.++.|-
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 45677777777777654
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=55.03 E-value=36 Score=27.83 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=41.4
Q ss_pred HHHHHcCCHHHHHHHHhcCchhhhc-----------cccccCCCcHHHHHHhcCCHHHHHHHHhc
Q 025876 17 YEASLRGSVRSLNTLMQSDSLILRK-----------TSLTSLRETPLHISALLGHLDFTKALLNH 70 (247)
Q Consensus 17 ~~A~~~g~~~~~~~Ll~~~~~~~~~-----------~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~ 70 (247)
+..+.-|+...|+.++.+|++...+ ...-..|.|.+|+|++..+-+++..|+..
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 3455679999999999998876332 11234599999999999999999988863
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=53.09 E-value=59 Score=23.13 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=32.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcCCc
Q 025876 12 STHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE 73 (247)
Q Consensus 12 ~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~ 73 (247)
..+-+-.|...|+.+....+....... .. -+..-..|...|++++++.-...-.+
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l~~~---~~----Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKLNDS---IT----WERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHCCH---HH----HHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHhCCH---HH----HHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 456678888899888887765432111 00 12334556666777777666554443
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=29.89 E-value=1.4e+02 Score=24.45 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=38.6
Q ss_pred HHHhcCCHHHHHHHHhcCCcchhc-------------ccCCCCcHHHHHHhcCCHHHHHHHHHc
Q 025876 54 ISALLGHLDFTKALLNHKPELAKE-------------LDSLKHSPLHLAAAEGHVQIVKELLLA 104 (247)
Q Consensus 54 ~A~~~g~~~~~~~Ll~~~~~~~~~-------------~~~~g~t~l~~A~~~g~~~~~~~Ll~~ 104 (247)
..+..|....|+..+..|.++.-. .-..|.|.+|+|+++.+-+++-.|+..
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 344568899999888887765211 135689999999999999999888863
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=24.39 E-value=76 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=13.1
Q ss_pred cccCCCcHHHHHHhcCCHHHHHHHHh
Q 025876 44 LTSLRETPLHISALLGHLDFTKALLN 69 (247)
Q Consensus 44 ~~~~g~t~L~~A~~~g~~~~~~~Ll~ 69 (247)
.|..|+..+......++.+....+++
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~ 94 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALAT 94 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHH
Confidence 34445555555555555554444443
No 120
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.08 E-value=1.6e+02 Score=23.24 Aligned_cols=153 Identities=12% Similarity=0.001 Sum_probs=75.7
Q ss_pred cCCCCchHHHHHHHcCCHHHHHHHHhcCchhhhccccccCCCcHHHHHHhcCCHHHHHHHHhcC--CcchhcccCCCCcH
Q 025876 8 HDEDSTHKLYEASLRGSVRSLNTLMQSDSLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK--PELAKELDSLKHSP 85 (247)
Q Consensus 8 ~~~~~~~~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~--~~~~~~~~~~g~t~ 85 (247)
.+..|.-.+..+......+-...+++.-......-..|..|+..+..+...+..+..+.+++.- .-..-..+..|...
T Consensus 105 ~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~V 184 (351)
T 3gvo_A 105 LQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRV 184 (351)
T ss_dssp TSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHH
T ss_pred hCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHH
Confidence 3556666666666666665555555431111111223445666666666666555444444421 11112345556555
Q ss_pred HHHHHhcCCHH----HHHHHHHcCCccccccCCCCCcHHHHHHhcCcHHHHHHHHHcC-CCc--cccccCCCcHHHHHHh
Q 025876 86 LHLAAAEGHVQ----IVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN-FDS--ALVKFHGDTVLHFKAE 158 (247)
Q Consensus 86 l~~A~~~g~~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~--~~~~~~g~t~l~~A~~ 158 (247)
+..+......+ +++.|...... -..|..|+-.+......+..+..+.+++.- ..+ -..+..|...+..+..
T Consensus 185 vq~~le~~~~~~~~~ii~~l~~~~~~--L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~ 262 (351)
T 3gvo_A 185 IQRILEHCTAEQTLPILEELHQHTEQ--LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVT 262 (351)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHhhhHHh--cCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555544432 33333322222 245777777777777777666555555421 111 1225555566666665
Q ss_pred cCCc
Q 025876 159 HLSL 162 (247)
Q Consensus 159 ~~~~ 162 (247)
.+..
T Consensus 263 ~~~~ 266 (351)
T 3gvo_A 263 HASR 266 (351)
T ss_dssp HSCH
T ss_pred hCCH
Confidence 5554
Done!