BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025877
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Query: 116 KQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPXXXXXXXXXXXXXXXYGCQGTGMKIT 175
++G+D+ H + SLE+LY G T KL+L++ ILC C G G+K
Sbjct: 9 QRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFV 68
Query: 176 TRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQK 235
TRQ+G MIQ+ Q C C G G++I +D+C C KV E+K+LEVHVE GM+ GQ+
Sbjct: 69 TRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQR 127
Query: 236 IAFEGQADEA 245
I F+G+AD+A
Sbjct: 128 IVFKGEADQA 137
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDK-GGDPEKFKELGQAYEVLSDPEKRDIY 70
TK Y++LGVS SA E ELKK YRKAA+K HPDK GD EKFKE+ +A+E+L+DP+KR+IY
Sbjct: 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIY 67
Query: 71 DQYGEDALK 79
DQYG +A +
Sbjct: 68 DQYGLEAAR 76
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 57/69 (82%), Gaps = 3/69 (4%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIY 70
YY+ LG+++ A+++E+K+AYR+ A++ HPDK +P EKFKE+ +AY+VLSDP KR+I+
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 71 DQYGEDALK 79
D+YGE+ LK
Sbjct: 65 DRYGEEGLK 73
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 4/72 (5%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDI 69
YYEILGVSK+A E E++KAY++ AMK HPD+ GD E KFKE+ +AYEVL+D +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 70 YDQYGEDALKEG 81
YDQYG A ++G
Sbjct: 65 YDQYGHAAFEQG 76
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 54/71 (76%), Gaps = 4/71 (5%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDI 69
YYEILGVSK+A E E++KAY++ AMK HPD+ GD E KFKE+ +AYEVL+D +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 70 YDQYGEDALKE 80
YDQYG A ++
Sbjct: 65 YDQYGHAAFEQ 75
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 54/71 (76%), Gaps = 4/71 (5%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPEKRDI 69
YYEILGVSK+A E E++KAY++ AMK HPD+ GD E KFKE+ +AYEVL+D +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 70 YDQYGEDALKE 80
YDQYG A ++
Sbjct: 65 YDQYGHAAFEQ 75
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIY 70
T YY++LGV A+++ELKKAYRK A+K HPDK D E+FK++ QAYEVLSD +KR IY
Sbjct: 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 71 DQYGED 76
DQ GE+
Sbjct: 68 DQGGEE 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPEKFKELGQAYEVLSDPEKRDIY 70
T YY++LGV +AT++ELKKAYRK A+K HPDK + EKFK++ QAYEVLSD +KR++Y
Sbjct: 6 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 71 DQYGE 75
D+ GE
Sbjct: 66 DKGGE 70
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIY 70
YYEILGVS+ A++++LKKAYR+ A+K HPDK P E FK +G AY VLS+PEKR Y
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68
Query: 71 DQYGE 75
DQ+G
Sbjct: 69 DQFGS 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 56/78 (71%), Gaps = 9/78 (11%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----PEKFKELGQAYEVLSDPEKRD 68
YYEIL V +SA+ D++KKAYR+ A++ HPDK D +KFKE+ +AYEVLSD KR+
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 69 IYDQYGEDALKEGMGGAG 86
IYD+YG +EG+ G G
Sbjct: 64 IYDRYG----REGLTGTG 77
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPE---KFKELGQAYEVLSDPEKRDIY 70
YY+ILGV KSA+E ++KKA+ K AMK HPDK P+ KF+E+ +AYE LSD +R Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 71 DQYGEDALKEGMGGAG 86
D G A G G +G
Sbjct: 69 DTLGHSAFTSGKGQSG 84
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 50/68 (73%), Gaps = 9/68 (13%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPE-------KFKELGQAYEVLSDPEK 66
YYE+L V + A+ + +KKAYRK A+K HPDK +PE +FK++ +AYEVLSD +K
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDK--NPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 67 RDIYDQYG 74
RDIYD+YG
Sbjct: 69 RDIYDRYG 76
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Query: 15 YEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-PE---KFKELGQAYEVLSDPEKRDIY 70
Y +LG+ K+AT D++KK+YRK A+K HPDK D PE KFKE+ A+ +L+D KR+IY
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 71 DQYGEDAL 78
D+YG L
Sbjct: 80 DKYGSLGL 87
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----PEKFKELGQAYEVLSDPEKRD 68
YYE+LGV SA+ +++KKAYRK A++ HPDK D +KFK + +AYEVLSD +KR
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 69 IYDQYGEDALK 79
+YD+ G D+ +
Sbjct: 71 LYDRAGCDSWR 81
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 69.3 bits (168), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 4/79 (5%)
Query: 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPE---KFKELGQAYEVLSDPE 65
++ +Y +LGVSK+A+ E+++A++K A+K HPDK +P F ++ +AYEVL D +
Sbjct: 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDED 78
Query: 66 KRDIYDQYGEDALKEGMGG 84
R YD+YGE L++ GG
Sbjct: 79 LRKKYDKYGEKGLEDNQGG 97
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 15 YEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYD 71
Y +LGVS++A++ ++KKAY+K A + HPDK DP ++F ++ +AYE+LS+ EKR YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
Query: 72 QYG 74
YG
Sbjct: 80 HYG 82
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPEK---FKELGQAYEVLSDPEKRDI 69
+Y +LGVSK+A+ E+++A++K A+K HPDK +P F ++ +AYEVL D + R
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 70 YDQYGEDALKEGMGG 84
YD+YGE L++ GG
Sbjct: 64 YDKYGEKGLEDNQGG 78
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDI 69
YY+ILGV ++A++ E+KKAY + A K HPD D EKF +L +AYEVLSD KR
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 70 YDQYG 74
YD YG
Sbjct: 69 YDAYG 73
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPD--KGGDPE-KFKELGQAYEVLSDPEKRDIY 70
YY ILGV + +K AYR+ A K HPD K D E KFK+L +A+EVL D ++R Y
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89
Query: 71 DQYGEDALKEGMGGAGAAH 89
DQ + G G H
Sbjct: 90 DQLWQHRNDPGFGRQRQTH 108
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPE---KFKELGQAYEVLSDPEKRDIY 70
YY I+GV + +K AYR+ A K HPD +P+ +FKE+ +A+EVLSD ++R Y
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 66
Query: 71 DQ 72
DQ
Sbjct: 67 DQ 68
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 4 RTPRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-------PEKFKELGQ 56
R ++S YY+ILGV ++A + E+ KAYRK A++ HPD + +KF ++
Sbjct: 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
Query: 57 AYEVLSDPEKRDIYD 71
A EVLSDPE R +D
Sbjct: 434 AKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 4 RTPRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-------PEKFKELGQ 56
R ++S YY+ILGV ++A + E+ KAYRK A++ HPD + +KF ++
Sbjct: 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
Query: 57 AYEVLSDPEKRDIYD 71
A EVLSDPE R +D
Sbjct: 434 AKEVLSDPEMRKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGG----DPEKFKELGQAYEVLSDPE 65
+ T Y++LGV +AT+ ++K AY + HPD+ E+F + QAY VL
Sbjct: 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74
Query: 66 KRDIYDQ 72
R YD+
Sbjct: 75 LRRKYDR 81
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----------EKFKELGQAYEVLSD 63
+Y ILG SA +LK+ Y+K + HPDK +KF E+ QA+++L +
Sbjct: 12 WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN 71
Query: 64 PEKRDIYD-QYGEDALK 79
E + YD Q ED L+
Sbjct: 72 EETKREYDLQRCEDDLR 88
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 7 RRSNNTK-YYEILGVSKSATEDELKKAYRKAAMKNHPDK---GGDPEKFKELGQAYEVL 61
RR N+K +++LGV A+ DE+ KAYRK A+ HPDK G + FK + A L
Sbjct: 21 RRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 14 YYEILGVSKSATEDELKKAYRKAAMKNHPDK------GGDPE----KFKELGQAYEVLSD 63
+Y ILG SA +LK+ Y+K + HPDK G E KF E+ QA+++L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 64 PEKRDIYD 71
E + YD
Sbjct: 78 EETKKKYD 85
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 8 RSNNTKYYEILGVSKSATED--ELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSD 63
R + + ++LG+ +SA + ++KAY K + HPDKGGD EK K++ Y+ + D
Sbjct: 7 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED 64
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 15 YEILGVSKSATEDE-LKKAYRKAAMKNHPDKGGDPE-------KFKELGQAYEVLSDPEK 66
Y++L V++ + + L KAYR A K+HPD+ + E +F+ + AYE L D E
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 67 RDIYDQY 73
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 8 RSNNTKYYEILGVSKSATED--ELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSD 63
R + + ++LG+ +SA + ++KAY K + HPDKGGD EK K++ Y+ + D
Sbjct: 4 REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED 61
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 8 RSNNTK-YYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLS 62
RS +T+ YY +LG + ++ +++ ++ A++ HPDK + E F++L +A E+L+
Sbjct: 15 RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74
Query: 63 DPEKRDIYDQY 73
+ E R YD +
Sbjct: 75 NEESRARYDHW 85
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 71
Score = 37.0 bits (84), Expect = 0.011, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 8 RSNNTKYYEILGVSKSA-TEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEK 66
+ N+ + +IL ++++ T+ +LK+ +RK + NHPDKGG P ++ +A + L EK
Sbjct: 10 KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFL---EK 66
Query: 67 RDI 69
R I
Sbjct: 67 RGI 69
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 116 KQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCP 149
KQ V H L+VSLE++Y+G TKK+ +S L P
Sbjct: 9 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNP 42
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 215 VTQEKKVLEVHVEKGMQHGQKIAFEGQADEA 245
+ E K+L + V+KG + G KI F + D+
Sbjct: 47 IRNEDKILTIEVKKGWKEGTKITFPKEGDQT 77
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 116 KQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCP 149
KQ V H L+VSLE++Y+G TKK+ +S L P
Sbjct: 2 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNP 35
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 215 VTQEKKVLEVHVEKGMQHGQKIAFEGQADEA 245
+ E K+L + V+KG + G KI F + D+
Sbjct: 40 IRNEDKILTIEVKKGWKEGTKITFPKEGDQT 70
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 15 YEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPEK------FKELGQAYEVLSDPEKR 67
++ +G++ T +++KK YRKA + HPDK G P + F EL A+ + ++
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 111
Query: 68 DIY 70
+Y
Sbjct: 112 PLY 114
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 121 VVHTLKVSLEDLYNGTTKKLSLSRNILCP 149
V H L+VSLE++Y+G TKK+ +S L P
Sbjct: 5 VTHDLRVSLEEIYSGCTKKMKISHKRLNP 33
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 215 VTQEKKVLEVHVEKGMQHGQKIAFEGQADEA 245
+ E K+L + V+KG + G KI F + D+
Sbjct: 38 IRNEDKILTIEVKKGWKEGTKITFPKEGDQT 68
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 26 EDELKKAYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIY 70
+ L+K YR+ ++HPD E+ L QAY L DP +R Y
Sbjct: 32 QSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 29 LKKAYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIY 70
L+K YR+ ++HPD E+ L QAY L DP +R Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 15 YEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPEK------FKELGQAYEVLSDPEKR 67
++ +G + T +++KK YRKA + HPDK G P + F EL A+ + ++
Sbjct: 39 WKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQK 98
Query: 68 DIY 70
+Y
Sbjct: 99 PLY 101
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 15 YEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPEK------FKELGQAY 58
++ +G++ T +++KK YRKA + HPDK G P + F EL A+
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAW 170
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 15 YEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPEK------FKELGQAY 58
++ +G++ T +++KK YRKA + HP K G P + F EL A+
Sbjct: 37 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAW 87
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 15 YEILGVSKSATEDELKKAYRKAAMKNHPDKG-GDPEK------FKELGQAY 58
++ +G++ T +++KK YRKA + HP K G P + F EL A+
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAW 86
>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog
From Methanopyrus Kandleri
Length = 506
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 16 EILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELG 55
EILG+ +SAT D L+ + + HPD + E+F+EL
Sbjct: 162 EILGIVRSATLDALEVHKKDPIPEVHPDP-AELEEFRELA 200
>pdb|1FAF|A Chain A, Nmr Structure Of The N-Terminal J Domain Of Murine
Polyomavirus T Antigens
Length = 79
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 29 LKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG 86
+++AY++ ++ HPDKGG +EL + K ++Y+ L+ +GG G
Sbjct: 30 MQQAYKQQSLLLHPDKGGSHALMQELNSLWGTF----KTEVYN------LRMNLGGTG 77
>pdb|2B0T|A Chain A, Structure Of Monomeric Nadp Isocitrate Dehydrogenase
pdb|3MBC|A Chain A, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
pdb|3MBC|B Chain B, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
Length = 738
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 20 VSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79
V+++ E L A+ KA M K DP F + +AY D++ QYGE L
Sbjct: 238 VARAKAEGILFSAHLKATMM----KVSDPIIFGHVVRAYFA-------DVFAQYGEQLLA 286
Query: 80 EGMGG 84
G+ G
Sbjct: 287 AGLNG 291
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 2 FGRTPRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVL 61
FG N + I+ S+ + + +R+ +KN+ K E F E ++ L
Sbjct: 112 FGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLFKSL 171
Query: 62 SDPEKRDIYDQYGEDALKEG--MGGAGAAHNPFDIFE 96
E+ I D GE K+G + G + F I E
Sbjct: 172 EMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIE 208
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGE 75
K + +A + ++G DP KF AY VL DPE R+ ++ E
Sbjct: 30 KCGFSRATIGLLGNQGVDPAKFA----AYNVLEDPELREGIKEFSE 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,728,546
Number of Sequences: 62578
Number of extensions: 249760
Number of successful extensions: 617
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 55
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)