Query 025877
Match_columns 247
No_of_seqs 252 out of 1821
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 8.4E-67 1.8E-71 448.7 22.7 230 9-246 1-239 (371)
2 PTZ00037 DnaJ_C chaperone prot 100.0 1.5E-58 3.4E-63 411.2 21.3 231 5-247 21-251 (421)
3 PRK14296 chaperone protein Dna 100.0 3.3E-56 7E-61 392.7 22.1 226 11-245 3-247 (372)
4 KOG0712 Molecular chaperone (D 100.0 1.8E-56 3.8E-61 379.9 16.3 227 10-247 2-229 (337)
5 PRK14288 chaperone protein Dna 100.0 5.8E-56 1.3E-60 391.0 20.2 225 11-246 2-234 (369)
6 PRK14298 chaperone protein Dna 100.0 1.3E-55 2.8E-60 389.5 21.8 229 9-245 2-239 (377)
7 PRK14276 chaperone protein Dna 100.0 2.1E-55 4.5E-60 389.1 21.8 229 11-246 3-245 (380)
8 PRK14286 chaperone protein Dna 100.0 2.9E-55 6.4E-60 386.9 21.7 229 11-246 3-245 (372)
9 PRK14287 chaperone protein Dna 100.0 4.4E-55 9.5E-60 385.7 21.7 229 11-246 3-237 (371)
10 PRK14282 chaperone protein Dna 100.0 8.4E-55 1.8E-59 384.1 22.7 230 11-246 3-251 (369)
11 PRK14280 chaperone protein Dna 100.0 1.3E-54 2.7E-59 383.6 21.9 229 11-246 3-242 (376)
12 PRK14278 chaperone protein Dna 100.0 2.1E-54 4.5E-59 382.3 22.2 229 12-246 3-238 (378)
13 PRK14277 chaperone protein Dna 100.0 1.9E-54 4.2E-59 383.7 21.5 233 9-245 2-253 (386)
14 PRK14285 chaperone protein Dna 100.0 4.8E-54 1E-58 378.3 20.9 225 11-246 2-241 (365)
15 PRK14297 chaperone protein Dna 100.0 8.1E-54 1.8E-58 379.2 22.3 231 11-246 3-247 (380)
16 PRK14279 chaperone protein Dna 100.0 1.8E-53 4E-58 377.6 21.3 226 10-246 7-268 (392)
17 PRK14284 chaperone protein Dna 100.0 2.1E-53 4.6E-58 377.6 20.9 228 12-246 1-253 (391)
18 PRK14281 chaperone protein Dna 100.0 1.9E-53 4.1E-58 378.3 20.5 232 12-246 3-261 (397)
19 TIGR02349 DnaJ_bact chaperone 100.0 3.7E-53 8E-58 372.6 21.3 228 13-245 1-241 (354)
20 PRK14294 chaperone protein Dna 100.0 1E-52 2.2E-57 370.5 20.5 228 10-246 2-239 (366)
21 PRK14301 chaperone protein Dna 100.0 1.4E-52 3.1E-57 370.0 20.3 226 11-246 3-239 (373)
22 PRK14290 chaperone protein Dna 100.0 4E-52 8.6E-57 366.7 22.1 229 12-244 3-245 (365)
23 PRK10767 chaperone protein Dna 100.0 4.9E-52 1.1E-56 367.2 21.5 223 11-245 3-236 (371)
24 PRK14300 chaperone protein Dna 100.0 1.2E-51 2.5E-56 364.3 21.0 226 12-245 3-239 (372)
25 PRK14291 chaperone protein Dna 100.0 1.4E-51 3E-56 365.0 21.4 228 11-246 2-250 (382)
26 PRK14295 chaperone protein Dna 100.0 2.6E-51 5.5E-56 363.5 21.7 223 10-246 7-261 (389)
27 PRK14283 chaperone protein Dna 100.0 1.7E-51 3.8E-56 364.1 20.5 227 9-246 2-245 (378)
28 PRK14292 chaperone protein Dna 100.0 3E-51 6.5E-56 362.2 21.6 230 12-246 2-239 (371)
29 PRK14289 chaperone protein Dna 100.0 3.9E-51 8.4E-56 363.0 21.8 234 10-246 3-253 (386)
30 PRK14293 chaperone protein Dna 100.0 6.4E-51 1.4E-55 360.1 21.1 232 11-245 2-241 (374)
31 KOG0715 Molecular chaperone (D 100.0 4.5E-37 9.8E-42 261.2 10.7 210 12-243 43-256 (288)
32 KOG0713 Molecular chaperone (D 100.0 8.7E-34 1.9E-38 238.5 10.4 207 9-244 13-225 (336)
33 PRK14299 chaperone protein Dna 100.0 6E-33 1.3E-37 237.9 13.6 160 11-245 3-181 (291)
34 PRK10266 curved DNA-binding pr 100.0 1.8E-32 4E-37 236.5 15.0 171 11-246 3-184 (306)
35 KOG0718 Molecular chaperone (D 99.8 3.8E-21 8.3E-26 167.3 5.4 75 8-82 5-87 (546)
36 KOG0716 Molecular chaperone (D 99.8 1.1E-20 2.5E-25 154.6 5.1 70 10-79 29-102 (279)
37 PTZ00341 Ring-infected erythro 99.8 2.2E-20 4.7E-25 175.6 6.6 73 7-79 568-643 (1136)
38 PHA03102 Small T antigen; Revi 99.8 1.7E-20 3.6E-25 144.2 4.8 87 9-101 2-90 (153)
39 KOG0691 Molecular chaperone (D 99.8 6E-20 1.3E-24 155.3 4.2 88 9-101 2-93 (296)
40 KOG0717 Molecular chaperone (D 99.8 1.1E-19 2.4E-24 158.1 5.2 73 8-80 4-81 (508)
41 PF00226 DnaJ: DnaJ domain; I 99.8 6E-19 1.3E-23 117.5 3.8 59 13-71 1-64 (64)
42 KOG0624 dsRNA-activated protei 99.7 5.3E-18 1.2E-22 143.7 6.5 71 8-79 390-467 (504)
43 KOG0719 Molecular chaperone (D 99.7 5E-18 1.1E-22 136.0 4.4 68 8-75 10-83 (264)
44 TIGR03835 termin_org_DnaJ term 99.7 1.1E-17 2.4E-22 154.3 6.1 68 12-79 2-72 (871)
45 smart00271 DnaJ DnaJ molecular 99.7 3.6E-17 7.7E-22 107.4 5.7 55 12-66 1-60 (60)
46 COG0484 DnaJ DnaJ-class molecu 99.7 6.1E-17 1.3E-21 140.3 7.7 170 4-202 14-211 (371)
47 KOG0721 Molecular chaperone (D 99.7 4E-17 8.6E-22 129.7 5.5 69 9-77 96-168 (230)
48 cd06257 DnaJ DnaJ domain or J- 99.7 1.8E-16 4E-21 102.1 6.0 51 13-63 1-55 (55)
49 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.6 2.3E-15 5E-20 100.5 6.6 65 148-214 1-66 (66)
50 KOG0714 Molecular chaperone (D 99.6 4.2E-15 9.2E-20 127.5 9.7 70 11-80 2-76 (306)
51 PTZ00100 DnaJ chaperone protei 99.6 2E-15 4.3E-20 110.3 5.6 56 7-62 60-115 (116)
52 COG2214 CbpA DnaJ-class molecu 99.6 1.3E-15 2.7E-20 125.4 5.2 67 8-74 2-73 (237)
53 KOG0550 Molecular chaperone (D 99.5 4.8E-15 1.1E-19 128.3 4.5 89 7-98 368-461 (486)
54 PRK05014 hscB co-chaperone Hsc 99.5 9.5E-15 2.1E-19 115.6 5.7 61 12-72 1-72 (171)
55 PRK01356 hscB co-chaperone Hsc 99.5 9E-15 1.9E-19 115.1 5.4 61 12-72 2-71 (166)
56 PRK03578 hscB co-chaperone Hsc 99.5 3.8E-14 8.2E-19 112.5 6.1 63 10-72 4-77 (176)
57 PHA02624 large T antigen; Prov 99.5 1.6E-14 3.4E-19 132.1 4.3 69 2-70 1-71 (647)
58 PRK00294 hscB co-chaperone Hsc 99.5 5.2E-14 1.1E-18 111.2 6.1 63 10-72 2-75 (173)
59 KOG0720 Molecular chaperone (D 99.5 1.9E-14 4.2E-19 125.8 3.6 63 11-73 234-299 (490)
60 KOG0722 Molecular chaperone (D 99.5 2.3E-14 4.9E-19 116.5 2.7 64 9-72 30-96 (329)
61 PRK14288 chaperone protein Dna 99.4 8.4E-13 1.8E-17 116.9 11.0 55 131-200 144-204 (369)
62 PRK14279 chaperone protein Dna 99.4 3.8E-13 8.1E-18 120.0 8.2 57 131-201 177-239 (392)
63 PRK10767 chaperone protein Dna 99.4 1.5E-12 3.2E-17 115.7 11.4 55 132-200 147-207 (371)
64 PRK09430 djlA Dna-J like membr 99.3 9E-13 1.9E-17 111.6 4.9 57 8-64 196-263 (267)
65 PRK14300 chaperone protein Dna 99.3 3.9E-12 8.4E-17 112.9 8.2 55 132-200 150-210 (372)
66 PRK14286 chaperone protein Dna 99.3 5.3E-11 1.2E-15 105.6 11.3 57 131-201 154-216 (372)
67 PRK14277 chaperone protein Dna 99.2 3.2E-11 6.9E-16 107.6 9.8 94 92-200 107-224 (386)
68 COG5407 SEC63 Preprotein trans 99.2 4.3E-12 9.3E-17 110.8 3.4 67 11-77 97-172 (610)
69 PRK14289 chaperone protein Dna 99.2 1.5E-10 3.2E-15 103.5 9.8 55 132-200 159-223 (386)
70 PRK14291 chaperone protein Dna 99.1 1.9E-10 4.1E-15 102.5 9.5 54 132-200 161-220 (382)
71 PRK01773 hscB co-chaperone Hsc 99.1 5.5E-11 1.2E-15 94.1 5.2 61 12-72 2-73 (173)
72 PRK14285 chaperone protein Dna 99.1 1.2E-10 2.7E-15 103.0 7.7 57 131-201 150-212 (365)
73 PRK14284 chaperone protein Dna 99.1 1.9E-10 4.1E-15 102.8 7.1 56 131-200 162-223 (391)
74 KOG1150 Predicted molecular ch 99.1 6.7E-11 1.5E-15 93.1 3.4 62 10-71 51-117 (250)
75 PRK14282 chaperone protein Dna 99.1 3E-10 6.5E-15 100.8 7.7 56 131-200 156-221 (369)
76 PRK14278 chaperone protein Dna 99.1 3E-10 6.6E-15 101.0 7.6 56 131-200 143-208 (378)
77 PRK14281 chaperone protein Dna 99.1 3.5E-10 7.5E-15 101.3 7.8 56 131-201 167-232 (397)
78 PRK14301 chaperone protein Dna 99.1 2.5E-10 5.4E-15 101.4 6.4 56 131-200 148-209 (373)
79 PLN03165 chaperone protein dna 99.1 5.9E-10 1.3E-14 81.1 7.1 61 144-218 40-100 (111)
80 PRK14295 chaperone protein Dna 99.0 4.2E-10 9.1E-15 100.5 7.4 57 131-201 170-232 (389)
81 PRK14297 chaperone protein Dna 99.0 4.3E-10 9.3E-15 100.2 7.1 55 132-200 153-217 (380)
82 PRK14290 chaperone protein Dna 99.0 4.3E-10 9.4E-15 99.7 6.9 54 132-200 154-217 (365)
83 PRK14298 chaperone protein Dna 99.0 3.6E-10 7.9E-15 100.4 6.4 57 131-201 145-211 (377)
84 PRK14276 chaperone protein Dna 99.0 3.5E-10 7.6E-15 100.7 6.3 56 131-200 150-215 (380)
85 TIGR00714 hscB Fe-S protein as 99.0 3.2E-10 6.9E-15 88.6 5.3 50 24-73 3-61 (157)
86 PRK14296 chaperone protein Dna 99.0 4.3E-10 9.4E-15 99.8 6.4 56 131-200 153-218 (372)
87 PRK14294 chaperone protein Dna 99.0 5E-10 1.1E-14 99.3 6.7 56 132-201 149-210 (366)
88 COG5269 ZUO1 Ribosome-associat 99.0 2.8E-10 6.1E-15 93.6 3.1 70 5-74 36-114 (379)
89 PRK14280 chaperone protein Dna 99.0 9.8E-10 2.1E-14 97.7 6.7 56 131-200 147-212 (376)
90 TIGR02349 DnaJ_bact chaperone 99.0 1.4E-09 3E-14 96.2 6.9 57 131-201 147-213 (354)
91 PRK14287 chaperone protein Dna 99.0 1.2E-09 2.6E-14 97.0 6.4 56 131-200 142-207 (371)
92 PTZ00037 DnaJ_C chaperone prot 98.9 1.7E-09 3.7E-14 97.2 6.6 58 131-201 154-221 (421)
93 PRK14292 chaperone protein Dna 98.9 2.1E-09 4.5E-14 95.6 5.6 58 131-201 143-210 (371)
94 PRK14293 chaperone protein Dna 98.8 4.8E-09 1E-13 93.3 6.4 57 131-201 147-213 (374)
95 PRK14283 chaperone protein Dna 98.8 6.5E-09 1.4E-13 92.6 6.6 56 131-200 150-215 (378)
96 TIGR02642 phage_xxxx uncharact 98.7 2.5E-08 5.5E-13 79.3 5.4 50 189-239 100-149 (186)
97 KOG0723 Molecular chaperone (D 98.7 3E-08 6.6E-13 70.3 5.1 58 8-65 52-109 (112)
98 KOG1789 Endocytosis protein RM 98.7 2.1E-08 4.5E-13 95.8 5.4 59 5-63 1274-1337(2235)
99 TIGR03835 termin_org_DnaJ term 98.6 8.1E-08 1.7E-12 89.9 6.0 70 117-247 655-724 (871)
100 KOG0568 Molecular chaperone (D 98.5 1.6E-07 3.5E-12 75.9 3.9 55 9-63 44-102 (342)
101 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.3 1.3E-07 2.7E-12 63.0 0.6 53 132-198 3-66 (66)
102 COG1107 Archaea-specific RecJ- 98.1 1.2E-06 2.6E-11 79.5 2.6 69 146-218 3-82 (715)
103 KOG2813 Predicted molecular ch 97.9 1.9E-05 4E-10 66.9 4.8 60 145-225 198-277 (406)
104 PLN03165 chaperone protein dna 97.7 3.9E-05 8.4E-10 56.0 3.6 49 131-202 45-100 (111)
105 KOG3192 Mitochondrial J-type c 97.7 3E-05 6.6E-10 59.1 2.7 66 7-72 3-79 (168)
106 COG1107 Archaea-specific RecJ- 97.5 0.0001 2.2E-09 67.4 4.7 57 132-202 7-82 (715)
107 KOG2813 Predicted molecular ch 97.4 6.6E-05 1.4E-09 63.7 1.8 77 129-217 168-258 (406)
108 PF01556 CTDII: DnaJ C termina 97.4 0.00023 4.9E-09 49.3 4.0 24 220-243 27-50 (81)
109 TIGR02642 phage_xxxx uncharact 97.1 0.00076 1.7E-08 53.9 4.4 30 145-174 99-128 (186)
110 COG1076 DjlA DnaJ-domain-conta 96.9 0.00043 9.3E-09 55.1 1.8 50 12-61 113-173 (174)
111 PRK14299 chaperone protein Dna 96.6 0.0023 5E-08 55.2 3.9 24 221-244 228-251 (291)
112 PRK10266 curved DNA-binding pr 96.5 0.0036 7.7E-08 54.4 4.9 25 221-245 236-260 (306)
113 PF03656 Pam16: Pam16; InterP 96.4 0.0066 1.4E-07 45.5 4.8 58 8-65 54-111 (127)
114 KOG0431 Auxilin-like protein a 96.4 0.0035 7.6E-08 57.1 4.0 44 17-60 393-447 (453)
115 COG1076 DjlA DnaJ-domain-conta 96.1 0.002 4.4E-08 51.2 0.9 60 13-72 2-72 (174)
116 KOG0712 Molecular chaperone (D 96.0 0.011 2.4E-07 51.5 4.8 82 147-240 145-240 (337)
117 cd03031 GRX_GRX_like Glutaredo 95.3 0.015 3.4E-07 44.8 2.8 21 147-172 101-121 (147)
118 KOG2824 Glutaredoxin-related p 93.2 0.086 1.9E-06 44.4 3.1 51 146-211 230-280 (281)
119 PF11833 DUF3353: Protein of u 93.2 0.2 4.3E-06 40.5 5.1 40 21-64 1-40 (194)
120 PF13446 RPT: A repeated domai 92.9 0.16 3.4E-06 33.0 3.5 47 10-63 3-49 (62)
121 KOG2824 Glutaredoxin-related p 92.8 0.096 2.1E-06 44.1 2.9 39 163-217 231-275 (281)
122 KOG0715 Molecular chaperone (D 92.0 0.074 1.6E-06 45.8 1.3 60 129-202 166-231 (288)
123 cd03031 GRX_GRX_like Glutaredo 88.4 0.53 1.1E-05 36.3 3.2 39 162-216 100-145 (147)
124 TIGR00630 uvra excinuclease AB 87.5 0.43 9.4E-06 47.6 2.8 33 163-199 738-770 (924)
125 PRK04023 DNA polymerase II lar 86.9 1.1 2.3E-05 44.5 4.9 63 130-215 611-674 (1121)
126 KOG0724 Zuotin and related mol 85.2 0.99 2.2E-05 39.6 3.6 50 23-72 3-60 (335)
127 COG0178 UvrA Excinuclease ATPa 84.7 0.9 2E-05 44.2 3.2 33 163-199 732-764 (935)
128 PRK00349 uvrA excinuclease ABC 84.5 0.72 1.6E-05 46.2 2.6 32 163-198 740-771 (943)
129 PF07092 DUF1356: Protein of u 82.9 0.75 1.6E-05 38.2 1.7 14 189-202 39-52 (238)
130 TIGR00310 ZPR1_znf ZPR1 zinc f 82.8 7.6 0.00017 31.3 7.4 78 163-240 2-100 (192)
131 smart00709 Zpr1 Duplicated dom 81.4 16 0.00034 28.6 8.6 20 221-240 81-100 (160)
132 PRK00635 excinuclease ABC subu 81.3 1.1 2.3E-05 47.7 2.5 33 163-199 1609-1641(1809)
133 TIGR00630 uvra excinuclease AB 81.1 0.7 1.5E-05 46.1 1.1 31 189-219 737-774 (924)
134 PRK14714 DNA polymerase II lar 80.8 2.6 5.7E-05 42.9 4.9 61 134-215 657-720 (1337)
135 PRK00349 uvrA excinuclease ABC 80.1 1.4 3E-05 44.2 2.8 35 189-223 739-780 (943)
136 PF14687 DUF4460: Domain of un 76.6 5.1 0.00011 29.4 4.2 42 22-63 4-53 (112)
137 PF07092 DUF1356: Protein of u 74.4 1.8 3.8E-05 36.0 1.4 16 145-160 38-53 (238)
138 PF07709 SRR: Seven Residue Re 72.1 2.7 5.8E-05 18.7 1.1 13 50-62 2-14 (14)
139 TIGR03655 anti_R_Lar restricti 69.3 9.4 0.0002 23.7 3.6 12 163-174 3-14 (53)
140 TIGR00340 zpr1_rel ZPR1-relate 68.5 16 0.00034 28.7 5.5 20 221-240 78-98 (163)
141 COG5552 Uncharacterized conser 67.9 19 0.00042 24.1 5.0 35 13-47 4-38 (88)
142 PF03833 PolC_DP2: DNA polymer 67.9 1.7 3.7E-05 42.4 0.0 47 146-214 656-702 (900)
143 KOG3442 Uncharacterized conser 67.0 10 0.00022 28.1 3.8 53 10-62 57-109 (132)
144 TIGR00757 RNaseEG ribonuclease 66.4 2.7 5.8E-05 38.2 0.9 22 181-202 383-404 (414)
145 PRK14890 putative Zn-ribbon RN 62.9 7.6 0.00016 24.9 2.2 19 189-211 37-55 (59)
146 COG0178 UvrA Excinuclease ATPa 62.4 5.8 0.00013 38.9 2.4 31 189-219 731-768 (935)
147 PRK00464 nrdR transcriptional 61.8 10 0.00022 29.5 3.2 35 163-197 2-37 (154)
148 PRK00635 excinuclease ABC subu 60.2 3.2 7E-05 44.3 0.3 31 189-219 1608-1645(1809)
149 PF03589 Antiterm: Antitermina 60.2 1.7 3.7E-05 30.9 -1.2 12 189-200 33-44 (95)
150 PRK12380 hydrogenase nickel in 59.4 10 0.00023 27.7 2.8 27 145-171 70-96 (113)
151 PF12434 Malate_DH: Malate deh 58.7 15 0.00033 19.5 2.5 17 26-42 10-26 (28)
152 PF07739 TipAS: TipAS antibiot 58.3 18 0.00038 26.1 4.0 52 19-75 51-104 (118)
153 PF08273 Prim_Zn_Ribbon: Zinc- 57.7 3.8 8.2E-05 24.1 0.2 10 163-172 5-14 (40)
154 PRK14559 putative protein seri 56.6 9.8 0.00021 36.6 2.9 49 146-213 2-50 (645)
155 PRK11712 ribonuclease G; Provi 55.5 4.8 0.0001 37.4 0.6 27 17-43 138-164 (489)
156 COG1198 PriA Primosomal protei 55.5 14 0.00031 36.1 3.7 50 145-213 435-484 (730)
157 COG5216 Uncharacterized conser 54.7 7.9 0.00017 24.7 1.3 16 124-139 30-45 (67)
158 PF13719 zinc_ribbon_5: zinc-r 54.3 5.3 0.00011 22.9 0.4 8 190-197 4-11 (37)
159 TIGR00100 hypA hydrogenase nic 53.3 16 0.00036 26.8 3.0 26 146-171 71-96 (115)
160 PF10041 DUF2277: Uncharacteri 52.8 68 0.0015 21.7 5.5 34 15-48 6-39 (78)
161 PF14205 Cys_rich_KTR: Cystein 52.4 30 0.00064 21.8 3.5 12 206-217 30-41 (55)
162 PF11023 DUF2614: Protein of u 52.3 7.6 0.00017 28.3 1.1 25 188-212 69-93 (114)
163 PRK05580 primosome assembly pr 52.0 14 0.00029 36.0 3.1 50 145-213 381-430 (679)
164 PRK00564 hypA hydrogenase nick 51.3 63 0.0014 23.7 5.9 27 145-171 71-98 (117)
165 PF03367 zf-ZPR1: ZPR1 zinc-fi 48.8 30 0.00065 27.1 4.0 36 163-198 3-40 (161)
166 PF13248 zf-ribbon_3: zinc-rib 48.1 7.2 0.00016 20.4 0.3 21 189-211 3-23 (26)
167 TIGR00595 priA primosomal prot 47.4 11 0.00024 35.1 1.7 51 145-214 213-263 (505)
168 PF08792 A2L_zn_ribbon: A2L zi 47.2 21 0.00046 19.9 2.1 11 163-173 5-15 (33)
169 PRK02935 hypothetical protein; 47.2 12 0.00026 27.0 1.4 25 188-212 70-94 (110)
170 PF14353 CpXC: CpXC protein 46.4 29 0.00063 25.7 3.5 13 188-200 38-50 (128)
171 PRK03564 formate dehydrogenase 45.2 18 0.00039 31.5 2.5 56 144-212 186-260 (309)
172 PF14354 Lar_restr_allev: Rest 45.2 31 0.00066 21.8 3.0 8 189-196 30-37 (61)
173 PRK00488 pheS phenylalanyl-tRN 44.8 13 0.00028 32.8 1.6 23 145-175 260-282 (339)
174 PRK12380 hydrogenase nickel in 44.3 33 0.00071 25.1 3.4 6 163-168 72-77 (113)
175 PRK05978 hypothetical protein; 44.0 13 0.00028 28.7 1.3 7 162-168 34-40 (148)
176 PF07754 DUF1610: Domain of un 43.6 19 0.00042 18.6 1.5 6 189-194 17-22 (24)
177 smart00778 Prim_Zn_Ribbon Zinc 42.2 13 0.00029 21.4 0.8 11 162-172 4-14 (37)
178 TIGR00100 hypA hydrogenase nic 41.9 40 0.00088 24.7 3.6 10 189-198 87-96 (115)
179 PF04967 HTH_10: HTH DNA bindi 41.6 8.6 0.00019 24.1 -0.0 34 4-37 19-52 (53)
180 PF08271 TF_Zn_Ribbon: TFIIB z 40.9 18 0.00039 21.3 1.3 9 163-171 2-10 (43)
181 COG1530 CafA Ribonucleases G a 40.9 33 0.00072 31.9 3.7 30 180-209 387-416 (487)
182 TIGR00595 priA primosomal prot 40.4 31 0.00067 32.2 3.4 41 144-198 221-263 (505)
183 PF04246 RseC_MucC: Positive r 39.8 59 0.0013 24.3 4.4 23 218-240 40-62 (135)
184 PF01155 HypA: Hydrogenase exp 39.0 17 0.00036 26.6 1.2 26 189-214 71-96 (113)
185 PF13453 zf-TFIIB: Transcripti 38.8 30 0.00065 20.1 2.1 8 189-196 20-27 (41)
186 COG0089 RplW Ribosomal protein 38.5 26 0.00056 24.8 2.0 21 17-37 25-45 (94)
187 PRK14873 primosome assembly pr 37.5 22 0.00047 34.5 2.0 50 145-214 383-432 (665)
188 PHA00626 hypothetical protein 37.1 28 0.00061 22.0 1.8 6 205-210 24-29 (59)
189 PRK05580 primosome assembly pr 36.5 23 0.00051 34.4 2.0 40 144-197 389-430 (679)
190 PF15446 zf-PHD-like: PHD/FYVE 36.4 83 0.0018 24.8 4.6 67 147-216 1-83 (175)
191 KOG0527 HMG-box transcription 35.5 43 0.00092 29.5 3.3 43 29-72 73-115 (331)
192 PF13717 zinc_ribbon_4: zinc-r 35.3 35 0.00077 19.3 1.9 7 190-196 4-10 (36)
193 PF09862 DUF2089: Protein of u 35.3 23 0.0005 26.0 1.4 8 205-212 13-20 (113)
194 PF10571 UPF0547: Uncharacteri 35.0 24 0.00052 18.5 1.1 6 205-210 15-20 (26)
195 cd01388 SOX-TCF_HMG-box SOX-TC 33.7 54 0.0012 21.4 3.0 41 31-72 14-54 (72)
196 PRK03681 hypA hydrogenase nick 32.3 52 0.0011 24.1 2.9 8 146-153 71-78 (114)
197 COG1198 PriA Primosomal protei 32.1 22 0.00048 34.8 1.1 40 144-197 443-484 (730)
198 CHL00030 rpl23 ribosomal prote 31.4 40 0.00087 23.8 2.1 21 17-37 23-43 (93)
199 KOG3799 Rab3 effector RIM1 and 28.9 30 0.00064 26.1 1.0 30 139-168 59-88 (169)
200 PF07191 zinc-ribbons_6: zinc- 28.8 28 0.00062 23.2 0.9 52 147-212 3-58 (70)
201 PRK14873 primosome assembly pr 28.8 56 0.0012 31.7 3.2 40 144-198 391-432 (665)
202 TIGR03829 YokU_near_AblA uncha 28.3 85 0.0018 22.0 3.2 24 207-230 2-25 (89)
203 COG1470 Predicted membrane pro 28.0 66 0.0014 29.7 3.3 29 217-245 443-472 (513)
204 PF02019 WIF: WIF domain; Int 27.9 88 0.0019 23.6 3.5 26 214-240 103-128 (132)
205 PF03811 Zn_Tnp_IS1: InsA N-te 27.8 41 0.00089 19.2 1.3 9 163-171 7-15 (36)
206 COG0551 TopA Zn-finger domain 27.6 2.6E+02 0.0057 20.9 6.3 49 162-212 61-109 (140)
207 TIGR01562 FdhE formate dehydro 27.3 1E+02 0.0022 26.8 4.2 55 145-212 184-260 (305)
208 PRK03824 hypA hydrogenase nick 27.1 24 0.00053 26.6 0.4 10 189-198 108-117 (135)
209 PF12387 Peptidase_C74: Pestiv 26.7 32 0.0007 27.1 0.9 24 146-172 163-186 (200)
210 PTZ00043 cytochrome c oxidase 26.6 1.3E+02 0.0029 24.9 4.5 49 14-62 82-132 (268)
211 TIGR02533 type_II_gspE general 26.0 63 0.0014 30.1 2.9 21 204-224 412-432 (486)
212 smart00440 ZnF_C2C2 C2C2 Zinc 26.0 1.4E+02 0.0031 17.2 3.5 16 163-178 2-17 (40)
213 PF09285 Elong-fact-P_C: Elong 25.9 72 0.0015 20.2 2.3 23 218-240 26-48 (56)
214 COG1327 Predicted transcriptio 25.9 88 0.0019 24.2 3.2 19 198-216 22-40 (156)
215 cd00084 HMG-box High Mobility 25.8 61 0.0013 20.2 2.1 43 29-72 11-53 (66)
216 cd01389 MATA_HMG-box MATA_HMG- 25.8 71 0.0015 21.2 2.5 42 30-72 13-54 (77)
217 PF01846 FF: FF domain; Inter 25.5 78 0.0017 19.0 2.4 14 28-41 1-14 (51)
218 PRK09678 DNA-binding transcrip 25.4 2.1E+02 0.0046 19.1 5.5 21 162-182 2-22 (72)
219 PF01096 TFIIS_C: Transcriptio 25.3 1.3E+02 0.0027 17.3 3.1 17 163-179 2-18 (39)
220 TIGR03636 L23_arch archaeal ri 25.2 62 0.0013 21.9 2.1 21 17-37 18-38 (77)
221 cd01390 HMGB-UBF_HMG-box HMGB- 24.8 65 0.0014 20.2 2.1 39 33-72 15-53 (66)
222 COG2260 Predicted Zn-ribbon RN 24.6 56 0.0012 20.9 1.6 9 189-197 18-26 (59)
223 PF08447 PAS_3: PAS fold; Int 24.4 16 0.00034 24.5 -1.0 30 11-44 5-35 (91)
224 PRK10613 hypothetical protein; 23.9 31 0.00066 23.0 0.3 11 25-35 64-74 (74)
225 PRK09710 lar restriction allev 23.5 1.2E+02 0.0026 19.8 3.0 33 162-200 7-39 (64)
226 COG4401 AroH Chorismate mutase 23.3 70 0.0015 23.4 2.1 25 21-45 96-120 (125)
227 PF00098 zf-CCHC: Zinc knuckle 23.3 49 0.0011 15.6 0.9 10 191-200 3-12 (18)
228 TIGR00757 RNaseEG ribonuclease 23.2 42 0.00092 30.5 1.2 13 162-174 391-403 (414)
229 smart00841 Elong-fact-P_C Elon 23.2 76 0.0016 20.1 2.0 24 218-241 26-49 (56)
230 PRK05738 rplW 50S ribosomal pr 23.1 69 0.0015 22.4 2.1 21 17-37 24-44 (92)
231 PF10769 DUF2594: Protein of u 22.5 34 0.00073 22.8 0.3 11 25-35 64-74 (74)
232 PF07295 DUF1451: Protein of u 22.5 51 0.0011 25.4 1.3 11 189-199 131-141 (146)
233 PRK00762 hypA hydrogenase nick 22.4 1.1E+02 0.0023 22.8 3.0 9 145-154 70-78 (124)
234 KOG2923 Uncharacterized conser 22.3 39 0.00085 22.0 0.6 14 125-138 31-44 (67)
235 COG5349 Uncharacterized protei 22.2 29 0.00063 25.7 -0.0 7 204-210 40-46 (126)
236 PRK00488 pheS phenylalanyl-tRN 22.1 69 0.0015 28.3 2.3 23 187-217 259-281 (339)
237 PF09723 Zn-ribbon_8: Zinc rib 21.8 96 0.0021 18.1 2.2 8 189-196 27-34 (42)
238 PF09538 FYDLN_acid: Protein o 21.1 78 0.0017 23.0 2.0 7 189-195 27-33 (108)
239 TIGR01206 lysW lysine biosynth 20.7 1.3E+02 0.0028 18.9 2.7 7 163-169 4-10 (54)
240 PF06827 zf-FPG_IleRS: Zinc fi 20.6 91 0.002 16.5 1.8 9 163-171 3-11 (30)
241 TIGR00244 transcriptional regu 20.6 1.1E+02 0.0023 23.6 2.7 16 198-213 22-37 (147)
242 PRK14892 putative transcriptio 20.5 53 0.0011 23.5 1.0 9 144-152 20-28 (99)
243 PRK14548 50S ribosomal protein 20.2 88 0.0019 21.6 2.0 21 17-37 25-45 (84)
244 PRK13130 H/ACA RNA-protein com 20.1 69 0.0015 20.3 1.4 8 189-196 18-25 (56)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-67 Score=448.70 Aligned_cols=230 Identities=43% Similarity=0.808 Sum_probs=202.2
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHhhcCCccccchhhhcCchhhhc-CCC
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGG-DP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE-GMG 83 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~-~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~-g~~ 83 (247)
+..+|||+||||+++||.+|||+|||+||++||||+|+ ++ ++|++|++|||||+||++|++||+||+.+++. +++
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 45789999999999999999999999999999999998 43 89999999999999999999999999998863 322
Q ss_pred CC--CCCC-CcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC
Q 025877 84 GA--GAAH-NPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (247)
Q Consensus 84 ~~--~~~~-~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~ 160 (247)
+. ++++ ++.|||++||+++.+ +.++..+++++.|+.+.|+|+|+|++.|+++++.+++.++|++|+|+|+..+.
T Consensus 81 g~g~~~fgg~~~DIF~~~FgGg~~---~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt 157 (371)
T COG0484 81 GFGFGGFGGDFGDIFEDFFGGGGG---GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGT 157 (371)
T ss_pred CCCcCCCCCCHHHHHHHhhcCCCc---ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCC
Confidence 21 1122 578999999973322 22233446789999999999999999999999999999999999999999984
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
..+|+.|+|+|.+...+++ .+++++++|+.|+|+|++++ ++|++|+|.|++...++++|+||+|+.+|++|+++
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i~--~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~ 232 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRT---GFFSFQQTCPTCNGTGKIIK--DPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLS 232 (371)
T ss_pred CCCcCCCCCCcCeEEEEEee---eEEEEEEECCCCccceeECC--CCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEe
Confidence 6789999999998888777 44566799999999999996 99999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 025877 240 GQADEAV 246 (247)
Q Consensus 240 g~Gd~~~ 246 (247)
|+|++++
T Consensus 233 g~G~~g~ 239 (371)
T COG0484 233 GEGEAGP 239 (371)
T ss_pred cCcccCC
Confidence 9999986
No 2
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=1.5e-58 Score=411.21 Aligned_cols=231 Identities=48% Similarity=0.925 Sum_probs=205.0
Q ss_pred CCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCC
Q 025877 5 TPRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG 84 (247)
Q Consensus 5 ~~~~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~ 84 (247)
+.+.+..+|||+||||+++||.+|||+|||+||++||||+|+++++|++|++||++|+||.+|+.||+||+.++..+.
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~-- 98 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE-- 98 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC--
Confidence 334556889999999999999999999999999999999998889999999999999999999999999988765321
Q ss_pred CCCCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcccC
Q 025877 85 AGAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKC 164 (247)
Q Consensus 85 ~~~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C 164 (247)
+..++.++|+.||+++. . .....++.|+.+.|.+||+|+|+|+.+++.+.+.+.|+.|+|+|...+...+|
T Consensus 99 --~~~d~~d~f~~~Fggg~----~---~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C 169 (421)
T PTZ00037 99 --QPADASDLFDLIFGGGR----K---PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDC 169 (421)
T ss_pred --CCcchhhhHHHhhcccc----c---cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccC
Confidence 12356788999887421 1 12234689999999999999999999999999999999999999877777789
Q ss_pred CCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCC
Q 025877 165 YGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE 244 (247)
Q Consensus 165 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~ 244 (247)
+.|+|+|+++..+++++ |+++++++|+.|+|+|+++...+.|+.|+|.|++...++++|.||+||.+|++|+|+|+||+
T Consensus 170 ~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~ 248 (421)
T PTZ00037 170 KLCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADE 248 (421)
T ss_pred CCCCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCC
Confidence 99999999999888888 88888999999999999998789999999999999999999999999999999999999998
Q ss_pred CCC
Q 025877 245 AVS 247 (247)
Q Consensus 245 ~~~ 247 (247)
.++
T Consensus 249 ~~~ 251 (421)
T PTZ00037 249 KPN 251 (421)
T ss_pred CCC
Confidence 753
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-56 Score=392.68 Aligned_cols=226 Identities=34% Similarity=0.661 Sum_probs=193.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcC--CCCC
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG--MGGA 85 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g--~~~~ 85 (247)
.+|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||+||+||.+|+.||+||+++++.+ ++++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 57999999999999999999999999999999999653 899999999999999999999999998876531 1100
Q ss_pred -CC------------CCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCC
Q 025877 86 -GA------------AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCK 152 (247)
Q Consensus 86 -~~------------~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~ 152 (247)
++ +.++.++|++||+++. . ..+.+.++.|+.+.|.++|+|+++|+.+++.+.+.+.|++|+
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~----~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~ 156 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSNK----S--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCF 156 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCCc----c--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCC
Confidence 01 1123366777775310 1 112345688999999999999999999999999999999999
Q ss_pred CCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCC
Q 025877 153 GKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQ 231 (247)
Q Consensus 153 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~ 231 (247)
|+|...+. ..+|+.|+|+|.++..+++++ ++++++++|+.|+|+|.++. ..|+.|+|.|++...++++|.||+|++
T Consensus 157 G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 233 (372)
T PRK14296 157 GSGAESNSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIR 233 (372)
T ss_pred CCccCCCCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCC
Confidence 99998765 467999999999999999888 44467899999999999986 889999999999999999999999999
Q ss_pred CCCEEEEccCCCCC
Q 025877 232 HGQKIAFEGQADEA 245 (247)
Q Consensus 232 ~g~~i~~~g~Gd~~ 245 (247)
+|++|+|+|+|++.
T Consensus 234 ~G~~i~~~g~G~~~ 247 (372)
T PRK14296 234 PNQQIKLSQKGHAS 247 (372)
T ss_pred CCCEEEEeccccCC
Confidence 99999999999976
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-56 Score=379.89 Aligned_cols=227 Identities=61% Similarity=1.036 Sum_probs=205.3
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCCCCC
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA 88 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~~~~ 88 (247)
.+..||+||+|+++||.+|||+|||+||++||||+|++. ++|++|+.|||||+||++|.+||+||++++..+.++++.+
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~~ 81 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGFG 81 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCCc
Confidence 567899999999999999999999999999999999987 9999999999999999999999999999997654333222
Q ss_pred CCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcccCCCCC
Q 025877 89 HNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQ 168 (247)
Q Consensus 89 ~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 168 (247)
. |++||+.+ +.+. +++.++.++.+.++++|+|+|.|.++++.++++.+|+.|+|.|..++...+|+.|+
T Consensus 82 ~-----f~~~F~~g---~~~~---~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~ 150 (337)
T KOG0712|consen 82 G-----FSQFFGFG---GNGG---RGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCR 150 (337)
T ss_pred c-----HHHhccCC---CcCc---cccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCC
Confidence 2 77887721 1111 11222999999999999999999999999999999999999999999988999999
Q ss_pred CCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCCCCC
Q 025877 169 GTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAVS 247 (247)
Q Consensus 169 G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~~~~ 247 (247)
|+|+.+..++++|||+|+++..|..|+|+|.++..++.|+.|.|.+++...+.++|.|++|+.++++|.+.|++|+.++
T Consensus 151 GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g 229 (337)
T KOG0712|consen 151 GSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPG 229 (337)
T ss_pred CCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCC
Confidence 9999999999999999999999999999999988899999999999999999999999999999999999999999874
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.8e-56 Score=390.99 Aligned_cols=225 Identities=30% Similarity=0.647 Sum_probs=186.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCCC
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG 86 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~~ 86 (247)
..|||+||||+++||.+|||+|||+||++||||+|+. .++|++|++||+||+|+.+|++||+||+.+++.+.++.+
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~ 81 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS 81 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence 4799999999999999999999999999999999973 279999999999999999999999999887653211111
Q ss_pred CCCCcc----hhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcc
Q 025877 87 AAHNPF----DIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALG 162 (247)
Q Consensus 87 ~~~~~~----~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~ 162 (247)
.+.+++ ++|+++|+++ +......++.++.|+.+.|.|||+|+++|+.+++.+.+.+.|+.|+|+|.......
T Consensus 82 ~~~~~f~~~~~~F~~~fg~g----~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 157 (369)
T PRK14288 82 DFSDFFEDLGSFFEDAFGFG----ARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALE 157 (369)
T ss_pred ccccchhhHHHHHHhhcCCC----CcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCc
Confidence 223333 3455555421 10111122356889999999999999999999999999999999999999877677
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCC
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQA 242 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~G 242 (247)
+|+.|+|+|.++... |++ +++++|+.|.|+|+++. ..|+.|.|.|++...++++|.||+|+++|++|+|+|+|
T Consensus 158 ~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G 230 (369)
T PRK14288 158 TCKQCNGQGQVFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKG 230 (369)
T ss_pred CCCCCCCCcEEEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCc
Confidence 899999999876543 444 45679999999999986 88999999999999999999999999999999999999
Q ss_pred CCCC
Q 025877 243 DEAV 246 (247)
Q Consensus 243 d~~~ 246 (247)
++.+
T Consensus 231 ~~~~ 234 (369)
T PRK14288 231 NEYE 234 (369)
T ss_pred cCCC
Confidence 9865
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-55 Score=389.51 Aligned_cols=229 Identities=38% Similarity=0.706 Sum_probs=195.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCC-
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG- 84 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~- 84 (247)
+..+|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|+.||+||+++++.+.++
T Consensus 2 ~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~ 81 (377)
T PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAE 81 (377)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcc
Confidence 4567999999999999999999999999999999999753 799999999999999999999999998876532211
Q ss_pred ----CCCCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC
Q 025877 85 ----AGAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (247)
Q Consensus 85 ----~~~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~ 160 (247)
++.+.++.++|++||++++ + ...+.+.++.|+.+.|.|+|+|+++|+.+++.+.+.+.|+.|+|+|...+.
T Consensus 82 ~~~~~~~~~~~~d~f~~~Fgg~~----~-~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 156 (377)
T PRK14298 82 DIFRGADFGGFGDIFEMFFGGGG----R-RGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGT 156 (377)
T ss_pred cccccCCcCcchhhhHhhhcCCC----c-cCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCC
Confidence 1122345578899887421 1 011224568899999999999999999999999999999999999998776
Q ss_pred c-ccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 161 L-GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 161 ~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
. .+|+.|+|+|.++..+++.+| +++++++|+.|+|+|.++. ..|+.|.|+|++...++++|.||+|+++|++|+|+
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~~~g-~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~ 233 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRSTPLG-QFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLS 233 (377)
T ss_pred CCCcCCCCCCccEEEEEEecCce-eEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEe
Confidence 4 679999999999888875444 4468899999999999886 88999999999999999999999999999999999
Q ss_pred cCCCCC
Q 025877 240 GQADEA 245 (247)
Q Consensus 240 g~Gd~~ 245 (247)
|+||+.
T Consensus 234 g~G~~~ 239 (377)
T PRK14298 234 GEGEAG 239 (377)
T ss_pred cccCCC
Confidence 999985
No 7
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-55 Score=389.10 Aligned_cols=229 Identities=40% Similarity=0.761 Sum_probs=197.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCC---
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG--- 84 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~--- 84 (247)
++|||+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||+++++.++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 57999999999999999999999999999999998753 899999999999999999999999999877643211
Q ss_pred C-C------CCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCC
Q 025877 85 A-G------AAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSK 157 (247)
Q Consensus 85 ~-~------~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~ 157 (247)
+ + ++.++.++|++||++++ +.+....+.++.|+.+.|.|||+|++.|+.+++.+.+.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~----~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~ 158 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGGG----ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAK 158 (380)
T ss_pred CCCCccccccccchhhHHHHHhCccc----cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccC
Confidence 0 1 12345578888887421 11111223568899999999999999999999999999999999999998
Q ss_pred CCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEE
Q 025877 158 SGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKI 236 (247)
Q Consensus 158 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i 236 (247)
.+. ..+|+.|+|+|.++..+++++|++++ +.+|+.|+|+|+++. ..|+.|.|.|++...++++|.||+|+++|++|
T Consensus 159 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 235 (380)
T PRK14276 159 PGTSPVTCGKCHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQI 235 (380)
T ss_pred CCCCCccCCCCCCeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEE
Confidence 765 46799999999999999999999876 679999999999986 88999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 025877 237 AFEGQADEAV 246 (247)
Q Consensus 237 ~~~g~Gd~~~ 246 (247)
+|+|+|++.+
T Consensus 236 ~l~G~G~~~~ 245 (380)
T PRK14276 236 RLQGQGEAGF 245 (380)
T ss_pred EEeccccCCC
Confidence 9999999864
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-55 Score=386.90 Aligned_cols=229 Identities=40% Similarity=0.776 Sum_probs=190.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCC--
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG-- 84 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~-- 84 (247)
++|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||+||+||.+|++||+||+++++.+.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 47999999999999999999999999999999998742 799999999999999999999999999877532111
Q ss_pred CCC-------CCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCC
Q 025877 85 AGA-------AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSK 157 (247)
Q Consensus 85 ~~~-------~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~ 157 (247)
.++ +.++.++|++||+++..++..........++.|+.+.|.|+|+|+++|+++++.+++.+.|++|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence 111 1244578999997421110000111223568899999999999999999999999999999999999998
Q ss_pred CCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEE
Q 025877 158 SGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKI 236 (247)
Q Consensus 158 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i 236 (247)
... ..+|+.|+|+|.++... |+++ ++++|+.|+|+|+++. ..|+.|+|.|++...++++|.||+|+++|++|
T Consensus 163 ~~~~~~~C~~C~G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 235 (372)
T PRK14286 163 KGSSPTTCPDCGGSGQIRRTQ----GFFS-VATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRL 235 (372)
T ss_pred CCCCCccCCCCcCeEEEEEEe----ceEE-EEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEE
Confidence 765 36799999999876643 5564 6789999999999986 88999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 025877 237 AFEGQADEAV 246 (247)
Q Consensus 237 ~~~g~Gd~~~ 246 (247)
+|+|+|++.+
T Consensus 236 ~~~g~G~~~~ 245 (372)
T PRK14286 236 KVSGEGEAGP 245 (372)
T ss_pred EECCccccCC
Confidence 9999999865
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.4e-55 Score=385.68 Aligned_cols=229 Identities=38% Similarity=0.756 Sum_probs=197.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCC--C
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG--A 85 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~--~ 85 (247)
..|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||+++++.++++ .
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 47999999999999999999999999999999999653 789999999999999999999999999877543211 1
Q ss_pred CCCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC-cccC
Q 025877 86 GAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LGKC 164 (247)
Q Consensus 86 ~~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C 164 (247)
+++.++.++|++||++++ + .+....+.++.|+.+.|.+||+|++.|+.+++.+.+.+.|+.|+|+|...+. ..+|
T Consensus 83 ~~f~~~~d~f~~~fgg~~---~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C 158 (371)
T PRK14287 83 GDFGGFSDIFDMFFGGGG---G-RRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETC 158 (371)
T ss_pred ccccchHHHHHhhhcccc---C-CCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCccc
Confidence 122345588999997421 1 1111223468999999999999999999999999999999999999988765 4679
Q ss_pred CCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCC
Q 025877 165 YGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE 244 (247)
Q Consensus 165 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~ 244 (247)
+.|+|+|.++..+++++|++++ +.+|+.|.|+|.++. +.|..|.|.+++....+++|.||+|+++|++|+|+|+|++
T Consensus 159 ~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~ 235 (371)
T PRK14287 159 SHCGGSGQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEA 235 (371)
T ss_pred CCCCCEEEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcC
Confidence 9999999999999999999875 689999999999986 8899999999999999999999999999999999999998
Q ss_pred CC
Q 025877 245 AV 246 (247)
Q Consensus 245 ~~ 246 (247)
.+
T Consensus 236 ~~ 237 (371)
T PRK14287 236 GV 237 (371)
T ss_pred CC
Confidence 63
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.4e-55 Score=384.15 Aligned_cols=230 Identities=32% Similarity=0.645 Sum_probs=193.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHhhcCCccccchhhhcCchhhhcCC---
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM--- 82 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~-----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~--- 82 (247)
.+|||+||||+++|+.+|||+|||+||++||||+|+. .++|++|++||++|+||.+|++||+||.+++....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 5799999999999999999999999999999999864 27999999999999999999999999987654211
Q ss_pred CCCCC-CCC----c-----chhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCC
Q 025877 83 GGAGA-AHN----P-----FDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCK 152 (247)
Q Consensus 83 ~~~~~-~~~----~-----~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~ 152 (247)
+++++ +.+ + .++|++||++++ +..+....+.++.|+.+.|.|||+|+++|+.+++.+++.+.|+.|+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~ 159 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGERR---TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCG 159 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhcccC---CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCC
Confidence 11111 111 1 156777776321 1111112345689999999999999999999999999999999999
Q ss_pred CCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCC
Q 025877 153 GKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQ 231 (247)
Q Consensus 153 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~ 231 (247)
|+|...+. ..+|+.|+|+|.++..+++++|++++ +.+|+.|+|+|.++. ..|+.|+|.+++...++++|.||+|+.
T Consensus 160 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 236 (369)
T PRK14282 160 GTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVE 236 (369)
T ss_pred ccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCC
Confidence 99998765 46799999999999999999999865 679999999999986 889999999999999999999999999
Q ss_pred CCCEEEEccCCCCCC
Q 025877 232 HGQKIAFEGQADEAV 246 (247)
Q Consensus 232 ~g~~i~~~g~Gd~~~ 246 (247)
+|++|+|+|+|++.+
T Consensus 237 ~G~~i~~~g~G~~~~ 251 (369)
T PRK14282 237 DGTVLRITGGGNAGY 251 (369)
T ss_pred CCCEEEEecccCCCC
Confidence 999999999999853
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-54 Score=383.63 Aligned_cols=229 Identities=39% Similarity=0.763 Sum_probs=196.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCCC-
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG- 86 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~~- 86 (247)
..|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||+++++.++++++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 47999999999999999999999999999999998653 89999999999999999999999999987764321110
Q ss_pred ---CC---CCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC
Q 025877 87 ---AA---HNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (247)
Q Consensus 87 ---~~---~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~ 160 (247)
.+ +++.++|++||++++ .......+.++.|+.+.|.|||+|+++|+.+++.+.+.+.|+.|+|+|...+.
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~~----~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGGG----RRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGT 158 (376)
T ss_pred CCCCccccccchhhHHHHhCCcc----ccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCC
Confidence 11 145588999987421 10111223468899999999999999999999999999999999999988765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
..+|+.|+|+|.+...+++++|+++ ++.+|+.|+|+|.++. ..|+.|+|+|++...++++|.||+|+++|++|+|+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~ 235 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVS 235 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEc
Confidence 4679999999999998889999887 4789999999999986 88999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 025877 240 GQADEAV 246 (247)
Q Consensus 240 g~Gd~~~ 246 (247)
|+|++.+
T Consensus 236 G~G~~~~ 242 (376)
T PRK14280 236 GEGEPGV 242 (376)
T ss_pred ccccCCC
Confidence 9999854
No 12
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-54 Score=382.26 Aligned_cols=229 Identities=38% Similarity=0.714 Sum_probs=194.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCC---
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA--- 85 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~--- 85 (247)
+|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+|+.+|++||+||++....+..++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~ 82 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG 82 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence 6999999999999999999999999999999999864 6899999999999999999999999976332111000
Q ss_pred CCCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC-cccC
Q 025877 86 GAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LGKC 164 (247)
Q Consensus 86 ~~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C 164 (247)
+++.++.++|++||++++ . +......+.++.|+.+.|.|||+|++.|+++++.+++.+.|+.|+|+|...+. ..+|
T Consensus 83 ~~f~~~~d~f~~ffgg~g--~-~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C 159 (378)
T PRK14278 83 GGFGGLGDVFEAFFGGGA--A-SRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTC 159 (378)
T ss_pred cCcCchhHHHHHHhCCCC--C-CCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceec
Confidence 112345588999997421 0 11111123568899999999999999999999999999999999999998765 4579
Q ss_pred CCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCC
Q 025877 165 YGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE 244 (247)
Q Consensus 165 ~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~ 244 (247)
+.|+|+|.++..++..+|+++. +++|+.|+|+|+++. +.|+.|.|+|++...++++|.||||+++|++|+|+|+||+
T Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 236 (378)
T PRK14278 160 DTCGGRGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEV 236 (378)
T ss_pred CCccCceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCC
Confidence 9999999999888888888864 579999999999986 8899999999999999999999999999999999999998
Q ss_pred CC
Q 025877 245 AV 246 (247)
Q Consensus 245 ~~ 246 (247)
.+
T Consensus 237 ~~ 238 (378)
T PRK14278 237 GP 238 (378)
T ss_pred CC
Confidence 65
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-54 Score=383.66 Aligned_cols=233 Identities=38% Similarity=0.720 Sum_probs=195.8
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcC-CC
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG-MG 83 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g-~~ 83 (247)
+...|||+||||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+|+.+|+.||+||+++++.+ ++
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14277 2 AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFG 81 (386)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccc
Confidence 3457999999999999999999999999999999998742 689999999999999999999999998876531 10
Q ss_pred CC----CC---------CCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCC
Q 025877 84 GA----GA---------AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPK 150 (247)
Q Consensus 84 ~~----~~---------~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~ 150 (247)
++ ++ +.++.++|++||++. |+++.......+.++.|+.+.|.|+|+|+++|+.+++.+++.+.|+.
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~ 160 (386)
T PRK14277 82 QGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDV 160 (386)
T ss_pred cCCcCCCCccccCccccccchhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCC
Confidence 00 01 122336777777632 11111111122456889999999999999999999999999999999
Q ss_pred CCCCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCC
Q 025877 151 CKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKG 229 (247)
Q Consensus 151 C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G 229 (247)
|+|+|..... ..+|+.|+|+|+++..+++++|++++. ++|+.|+|+|.++. ..|+.|+|+|++...+.++|.||+|
T Consensus 161 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G 237 (386)
T PRK14277 161 CKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPAG 237 (386)
T ss_pred CCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCCC
Confidence 9999998765 467999999999999999999998765 79999999999986 8899999999999999999999999
Q ss_pred CCCCCEEEEccCCCCC
Q 025877 230 MQHGQKIAFEGQADEA 245 (247)
Q Consensus 230 ~~~g~~i~~~g~Gd~~ 245 (247)
+++|++|+|+|+|++.
T Consensus 238 ~~~G~~i~~~g~G~~~ 253 (386)
T PRK14277 238 IDDGQMITLRGEGEPG 253 (386)
T ss_pred ccCCcEEEEccccccC
Confidence 9999999999999975
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.8e-54 Score=378.31 Aligned_cols=225 Identities=40% Similarity=0.781 Sum_probs=190.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCC--C
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG--G 84 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~--~ 84 (247)
.+|||++|||+++||.+|||+|||+||++||||+|++. ++|++|++||++|+|+.+|+.||+||+.+++.+.+ +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 37999999999999999999999999999999998742 78999999999999999999999999987753211 1
Q ss_pred C-CC-------CCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCC
Q 025877 85 A-GA-------AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGS 156 (247)
Q Consensus 85 ~-~~-------~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~ 156 (247)
. ++ +.++.++|++||+++. + ..+...+.++.|+.+.|.|+|+|+++|+.+++.+++.+.|+.|+|+|.
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~---~-~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~ 157 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR---G-QDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKS 157 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc---C-CCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCccc
Confidence 0 11 1234578888887321 1 101122356889999999999999999999999999999999999998
Q ss_pred CCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCE
Q 025877 157 KSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQK 235 (247)
Q Consensus 157 ~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~ 235 (247)
..+. ...|+.|+|+|.++. ++|++ +++++|+.|.|+|.++. +.|+.|+|+|++...++++|.||+|+++|++
T Consensus 158 ~~~~~~~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 230 (365)
T PRK14285 158 EKGTSPSICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230 (365)
T ss_pred CCCCCCccCCCccCceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCE
Confidence 8765 457999999998664 56777 56899999999999986 8899999999999999999999999999999
Q ss_pred EEEccCCCCCC
Q 025877 236 IAFEGQADEAV 246 (247)
Q Consensus 236 i~~~g~Gd~~~ 246 (247)
|+|+|+|++.+
T Consensus 231 i~~~g~G~~~~ 241 (365)
T PRK14285 231 IKMRGKGSVNP 241 (365)
T ss_pred EEEeeccccCC
Confidence 99999999865
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.1e-54 Score=379.23 Aligned_cols=231 Identities=40% Similarity=0.762 Sum_probs=196.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCC--C-
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM--G- 83 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~--~- 83 (247)
..|||+||||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+||.+|++||+||+++++.+. +
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 47999999999999999999999999999999999742 7999999999999999999999999998775321 1
Q ss_pred -CCCC-----CCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCC
Q 025877 84 -GAGA-----AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSK 157 (247)
Q Consensus 84 -~~~~-----~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~ 157 (247)
+.++ +.++.++|++||+++ +++ ...+...+.++.|+.+.|.|||+|++.|+.+++.+.+.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~-~g~-~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~ 160 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGG-FGS-SSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAK 160 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccC-ccc-cccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCccccccc
Confidence 1011 123458899999742 111 11111223568899999999999999999999999999999999999998
Q ss_pred CCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEE
Q 025877 158 SGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKI 236 (247)
Q Consensus 158 ~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i 236 (247)
.+. ..+|+.|+|+|.++..+++++|+++ ++.+|+.|+|+|.++. ..|..|+|.|++....+++|.||+|+++|++|
T Consensus 161 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I 237 (380)
T PRK14297 161 PGTSPKTCDKCGGTGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVI 237 (380)
T ss_pred CCCcCccCCCccCeEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEE
Confidence 765 4679999999999999999998776 4789999999999986 88999999999999999999999999999999
Q ss_pred EEccCCCCCC
Q 025877 237 AFEGQADEAV 246 (247)
Q Consensus 237 ~~~g~Gd~~~ 246 (247)
+|+|+|++.+
T Consensus 238 ~l~g~G~~~~ 247 (380)
T PRK14297 238 PLRGQGEHGK 247 (380)
T ss_pred EEecCccCCC
Confidence 9999999854
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-53 Score=377.58 Aligned_cols=226 Identities=35% Similarity=0.688 Sum_probs=182.7
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchhhhcCCC--
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG-- 83 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~-- 83 (247)
..+|||+||||+++|+.+|||+|||+||++||||+|++ .++|++|++||++|+||.+|++||+||+.+...++.
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 46899999999999999999999999999999999973 289999999999999999999999998643221110
Q ss_pred ------CCCC--------CCCcc---------------hhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeeccc
Q 025877 84 ------GAGA--------AHNPF---------------DIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYN 134 (247)
Q Consensus 84 ------~~~~--------~~~~~---------------~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~ 134 (247)
+.++ ..++. ++|+.||+++ ++..+...+.++.|+.+.|.|+|+|+++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~----~~~~~~~~~~~g~di~~~l~ltLee~~~ 162 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG----GGSARPSRPRRGNDLETETTLDFVEAAK 162 (392)
T ss_pred cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCC----CcccccCCCCCCCCeEEEEEEEHHHHhC
Confidence 0001 01222 2333334311 1111112345688999999999999999
Q ss_pred CceeeecccccccCCCCCCCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCC
Q 025877 135 GTTKKLSLSRNILCPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKAN 213 (247)
Q Consensus 135 G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (247)
|+++++.+.+.+.|+.|+|+|...+. ..+|+.|+|+|.++..+ |++ +++++|+.|+|+|+++. ..|..|.|.
T Consensus 163 G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~i~--~~C~~C~G~ 235 (392)
T PRK14279 163 GVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAF-GFSEPCTDCRGTGSIIE--DPCEECKGT 235 (392)
T ss_pred CeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cce-EEEEecCCCCceeEEeC--CcCCCCCCC
Confidence 99999999999999999999998765 46799999999876643 333 35699999999999986 889999999
Q ss_pred cEEEEeEEEEEEecCCCCCCCEEEEccCCCCCC
Q 025877 214 KVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAV 246 (247)
Q Consensus 214 g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~~~ 246 (247)
|++...++++|.||+|+++|++|+|+|+|++.+
T Consensus 236 g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~ 268 (392)
T PRK14279 236 GVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGL 268 (392)
T ss_pred eEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCC
Confidence 999999999999999999999999999999865
No 17
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-53 Score=377.61 Aligned_cols=228 Identities=38% Similarity=0.714 Sum_probs=186.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCC--CC
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG--GA 85 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~--~~ 85 (247)
.|||+||||+++||.+|||+|||+||++||||+|++. ++|++|++||++|+|+.+|+.||+||++++..+.+ ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 4899999999999999999999999999999999742 79999999999999999999999999877643211 11
Q ss_pred CCC--------------C----CcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeeccccccc
Q 025877 86 GAA--------------H----NPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNIL 147 (247)
Q Consensus 86 ~~~--------------~----~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~ 147 (247)
+++ . .+.++|++||++.+...+.......+.++.|+.+.|.|||+|+++|+.+++.+.+.+.
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 111 0 1135666777532100001111122356889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEe
Q 025877 148 CPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHV 226 (247)
Q Consensus 148 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~I 226 (247)
|++|+|+|...+. ..+|+.|+|+|.++..+ |+++ ++.+|+.|+|+|.++. +.|+.|.|.|++...++++|.|
T Consensus 161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~I 233 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFS-MASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVHI 233 (391)
T ss_pred CCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEE-EEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEEE
Confidence 9999999998765 46799999999877543 4554 6789999999999986 8899999999999999999999
Q ss_pred cCCCCCCCEEEEccCCCCCC
Q 025877 227 EKGMQHGQKIAFEGQADEAV 246 (247)
Q Consensus 227 p~G~~~g~~i~~~g~Gd~~~ 246 (247)
|||+++|++|+|+|+||+.+
T Consensus 234 p~G~~~G~~i~~~g~G~~~~ 253 (391)
T PRK14284 234 PAGVDSGMRLKMEGYGDAGQ 253 (391)
T ss_pred CCCCCCCCEEEEeccccCCC
Confidence 99999999999999999875
No 18
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-53 Score=378.35 Aligned_cols=232 Identities=40% Similarity=0.766 Sum_probs=193.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCC--CCC
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM--GGA 85 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~--~~~ 85 (247)
.|||+||||+++|+.+|||+|||+||++||||++++. ++|++|++||++|+|+.+|+.||+||+++++... ++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~ 82 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG 82 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence 6999999999999999999999999999999999742 7999999999999999999999999998775311 011
Q ss_pred C----CCCCcchh---hccccCCCC-CC-----------CCCCCCC--cccccCcceeeeeeeeeeecccCceeeecccc
Q 025877 86 G----AAHNPFDI---FESFFGGGT-FG-----------AGGSSRG--RRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSR 144 (247)
Q Consensus 86 ~----~~~~~~~~---F~~~Fg~~~-~~-----------~~~~~~~--~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~ 144 (247)
+ ++.++.++ |++||+++. +. +++.... ..+.++.|+.+.|.|+|+|+++|+++++.+++
T Consensus 83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r 162 (397)
T PRK14281 83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence 0 11123344 457786421 00 0110001 12246889999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEE
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEV 224 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v 224 (247)
.+.|+.|+|+|...+...+|+.|+|+|.+...+++.+|+++. +++|+.|.|+|.++. +.|+.|.|.+++...++++|
T Consensus 163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V 239 (397)
T PRK14281 163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVK--DRCPACYGEGIKQGEVTVKV 239 (397)
T ss_pred eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeC--CCCCCCCCCccEecceEEEE
Confidence 999999999999887667899999999999888888888765 679999999999986 88999999999999999999
Q ss_pred EecCCCCCCCEEEEccCCCCCC
Q 025877 225 HVEKGMQHGQKIAFEGQADEAV 246 (247)
Q Consensus 225 ~Ip~G~~~g~~i~~~g~Gd~~~ 246 (247)
.||+|+++|++|+|+|+|++.+
T Consensus 240 ~Ip~G~~~G~~i~~~g~G~~~~ 261 (397)
T PRK14281 240 TVPAGVQDGNYLTLRGQGNAGP 261 (397)
T ss_pred ecCCCCCCCCEEEEecccccCC
Confidence 9999999999999999999864
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=3.7e-53 Score=372.62 Aligned_cols=228 Identities=43% Similarity=0.812 Sum_probs=195.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCC-CC--
Q 025877 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG-AG-- 86 (247)
Q Consensus 13 ~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~-~~-- 86 (247)
|||+||||+++|+.+|||+|||+||++||||+++++ ++|++|++||++|+|+.+|++||.||+++++.+..+ ++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 799999999999999999999999999999998643 799999999999999999999999998876532111 11
Q ss_pred ------CCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC
Q 025877 87 ------AAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (247)
Q Consensus 87 ------~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~ 160 (247)
.+.++.++|+.||+++. +. +..+.....++.|+.+.|.+||+|+++|+.+++.+++.+.|+.|+|+|.....
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~-g~-~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGG-GS-GRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGT 158 (354)
T ss_pred CCccccCcCchhhhHHHHhccCc-cc-CccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCC
Confidence 12345578888887421 11 11112234578899999999999999999999999999999999999988765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
..+|+.|+|+|.++..+++++|++++ +++|+.|.|+|+++. ..|+.|+|++++..++.++|.||+|+++|++|+|+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 235 (354)
T TIGR02349 159 DPKTCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVS 235 (354)
T ss_pred CCccCCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEe
Confidence 46799999999999999999999986 679999999999986 78999999999999999999999999999999999
Q ss_pred cCCCCC
Q 025877 240 GQADEA 245 (247)
Q Consensus 240 g~Gd~~ 245 (247)
|+|++.
T Consensus 236 g~G~~~ 241 (354)
T TIGR02349 236 GKGNAG 241 (354)
T ss_pred cCccCC
Confidence 999974
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-52 Score=370.52 Aligned_cols=228 Identities=36% Similarity=0.699 Sum_probs=189.6
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcC-CCC
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG-MGG 84 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g-~~~ 84 (247)
..+|||+||||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+|+.+|+.||+||+++++.+ +++
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~ 81 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG 81 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence 457999999999999999999999999999999999742 799999999999999999999999999877532 111
Q ss_pred CCCC----CCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC
Q 025877 85 AGAA----HNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (247)
Q Consensus 85 ~~~~----~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~ 160 (247)
.+++ .++.++|++||+.++.. +.+......++.|+.+.|.|+|+|++.|+.+++.+.+.+.|+.|+|+|.....
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~g~~~--~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 159 (366)
T PRK14294 82 FSGFDDIFSSFGDIFEDFFGFGGGR--RGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGT 159 (366)
T ss_pred cCccccchhhhhhhHHHhhccCCCc--CCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCC
Confidence 1111 23447788888611110 11111223568899999999999999999999999999999999999998765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
..+|+.|+|+|.++... |+++ ++++|+.|+|+|+++. ..|+.|.|.|++...++++|.||+|+++|++|+|+
T Consensus 160 ~~~~C~~C~G~G~~~~~~----G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 232 (366)
T PRK14294 160 SPTTCPQCGGSGQVTQSQ----GFFS-IRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLR 232 (366)
T ss_pred CcccCCCcCCeEEEEEEe----eeEE-EEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEc
Confidence 45799999999876532 5554 6899999999999986 88999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 025877 240 GQADEAV 246 (247)
Q Consensus 240 g~Gd~~~ 246 (247)
|+|++.+
T Consensus 233 g~G~~~~ 239 (366)
T PRK14294 233 GEGEAGV 239 (366)
T ss_pred cCccCCC
Confidence 9999753
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-52 Score=369.97 Aligned_cols=226 Identities=38% Similarity=0.744 Sum_probs=186.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCCC
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG 86 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~~ 86 (247)
..|||++|||+++||.+|||+|||+||++||||+|++. ++|++|++||+||+||.+|+.||+||+++++.+.+.++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 47999999999999999999999999999999998742 69999999999999999999999999987653211111
Q ss_pred --C----CCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC
Q 025877 87 --A----AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (247)
Q Consensus 87 --~----~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~ 160 (247)
+ +.++.++|++||+.++. ++ .+...+.++.|+.+.|.++|+|+++|+.+++.+.+.+.|+.|+|+|.....
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~--~~-~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~ 159 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGG--GS-RRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGT 159 (373)
T ss_pred cccccccccchHHHHHHHhhccCc--cc-ccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCC
Confidence 1 11223566666652111 10 111234578999999999999999999999999999999999999998765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
..+|+.|+|+|.+... . |+++ ++.+|+.|+|+|+++. ..|+.|+|+|++....+++|.||+|+++|++|+|+
T Consensus 160 ~~~~C~~C~G~G~v~~~--~--G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 232 (373)
T PRK14301 160 SPETCRHCGGSGQVRQS--Q--GFFQ-IAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLR 232 (373)
T ss_pred CCcccCCccCeeEEEEE--e--eeEE-EEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEe
Confidence 4579999999987643 2 4543 4799999999999986 88999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 025877 240 GQADEAV 246 (247)
Q Consensus 240 g~Gd~~~ 246 (247)
|+|++.+
T Consensus 233 g~G~~~~ 239 (373)
T PRK14301 233 GEGEPGV 239 (373)
T ss_pred ccccCCC
Confidence 9999754
No 22
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-52 Score=366.66 Aligned_cols=229 Identities=36% Similarity=0.672 Sum_probs=190.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCC-
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA- 85 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~- 85 (247)
.|||+||||+++|+.+|||+|||+||++||||++++. ++|++|++||++|+|+.+|..||+||+.+++.+.++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 6999999999999999999999999999999998642 7899999999999999999999999988765311110
Q ss_pred ----CCCCCcchhhccccCCCCCC---CCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCC
Q 025877 86 ----GAAHNPFDIFESFFGGGTFG---AGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKS 158 (247)
Q Consensus 86 ----~~~~~~~~~F~~~Fg~~~~~---~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~ 158 (247)
.++.++.++|+.||++.... ++.....+.+.++.|+.+.|.|||+|++.|+.+++.+.+.+.|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~ 162 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN 162 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence 01235668899888742000 01011111123478999999999999999999999999999999999999987
Q ss_pred CCcccCCCCCCCcEEEEEEeecccee-eEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEE
Q 025877 159 GALGKCYGCQGTGMKITTRQIGLGMI-QQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIA 237 (247)
Q Consensus 159 ~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~ 237 (247)
+...+|+.|+|+|.++..++ +|++ +++..+|+.|.|.|+++. ..|+.|+|+|++...++++|.||+|+.+|++|+
T Consensus 163 ~~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~ 238 (365)
T PRK14290 163 GKLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLR 238 (365)
T ss_pred CCCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEE
Confidence 76678999999998777664 4444 456789999999999976 899999999999999999999999999999999
Q ss_pred EccCCCC
Q 025877 238 FEGQADE 244 (247)
Q Consensus 238 ~~g~Gd~ 244 (247)
|+|+||+
T Consensus 239 ~~g~G~~ 245 (365)
T PRK14290 239 VKGKGQS 245 (365)
T ss_pred EccccCC
Confidence 9999986
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.9e-52 Score=367.22 Aligned_cols=223 Identities=41% Similarity=0.826 Sum_probs=185.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCC--C
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG--G 84 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~--~ 84 (247)
.+|||+||||+++||.+|||+|||+||++||||+|++. ++|++|++||++|+|+.+|+.||+||++++..+.+ +
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 57999999999999999999999999999999998742 79999999999999999999999999887653211 1
Q ss_pred CC---CCCC-cchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC
Q 025877 85 AG---AAHN-PFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA 160 (247)
Q Consensus 85 ~~---~~~~-~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~ 160 (247)
.+ ++.+ +.++|+.||+++. + ...+.+.++.|+.+.|.|||+|+++|+.+++.+.+.+.|+.|+|+|...+.
T Consensus 83 ~~~~~~~~~~f~~~f~~~fgg~~----~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~ 157 (371)
T PRK10767 83 FGGGGGFGDIFGDIFGDIFGGGR----G-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGT 157 (371)
T ss_pred CCCccccccchhhhhhhhccCCc----c-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCC
Confidence 01 1112 2355666664211 1 111224578999999999999999999999999999999999999988765
Q ss_pred -cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 161 -LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 161 -~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
...|+.|+|+|.++..+ |+++ ++.+|+.|+|+|+++. ..|+.|.|+|++.....++|.||+|+++|++|+|+
T Consensus 158 ~~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 230 (371)
T PRK10767 158 SPKTCPTCHGAGQVRMQQ----GFFT-VQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLS 230 (371)
T ss_pred CCccCCCCCCeeEEEEee----ceEE-EEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEe
Confidence 35799999999876543 4554 6789999999999986 88999999999999999999999999999999999
Q ss_pred cCCCCC
Q 025877 240 GQADEA 245 (247)
Q Consensus 240 g~Gd~~ 245 (247)
|+|++.
T Consensus 231 g~G~~~ 236 (371)
T PRK10767 231 GEGEAG 236 (371)
T ss_pred cCccCC
Confidence 999984
No 24
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-51 Score=364.26 Aligned_cols=226 Identities=35% Similarity=0.722 Sum_probs=186.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCC--CCC-
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM--GGA- 85 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~--~~~- 85 (247)
+|||+||||+++||.+|||+|||+||++||||++++. ++|++|++||++|+|+.+|+.||+||++++..+. ++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g 82 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG 82 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence 6999999999999999999999999999999998643 7999999999999999999999999988765321 111
Q ss_pred --CCC-CCcchhhccccCCCCCCCCC-CCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC-
Q 025877 86 --GAA-HNPFDIFESFFGGGTFGAGG-SSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA- 160 (247)
Q Consensus 86 --~~~-~~~~~~F~~~Fg~~~~~~~~-~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~- 160 (247)
+++ .++.++|++||++. |++++ ......+.++.++.+.|.++|+|+++|+.+++.+.+.+.|+.|+|+|...+.
T Consensus 83 ~~~~~~~~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~ 161 (372)
T PRK14300 83 NHGGFHPDINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGET 161 (372)
T ss_pred CCCccccchhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCC
Confidence 111 12335566666531 11111 1111122468899999999999999999999999999999999999998765
Q ss_pred cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEcc
Q 025877 161 LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEG 240 (247)
Q Consensus 161 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g 240 (247)
..+|+.|+|+|.++.. .|+++ ++.+|+.|+|+|.++. +.|+.|+|+|++...+.++|.||+|+++|++|+|+|
T Consensus 162 ~~~C~~C~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g 234 (372)
T PRK14300 162 VTTCDACSGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTG 234 (372)
T ss_pred CccCCCccCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEec
Confidence 4679999999987652 35665 6789999999999986 889999999999999999999999999999999999
Q ss_pred CCCCC
Q 025877 241 QADEA 245 (247)
Q Consensus 241 ~Gd~~ 245 (247)
+|++.
T Consensus 235 ~G~~~ 239 (372)
T PRK14300 235 EGEAG 239 (372)
T ss_pred cccCC
Confidence 99975
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-51 Score=364.97 Aligned_cols=228 Identities=38% Similarity=0.723 Sum_probs=185.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCC---C
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG---G 84 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~---~ 84 (247)
.+|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+||.+|++||+||+.++..+.+ +
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 47999999999999999999999999999999999753 89999999999999999999999999877643211 1
Q ss_pred CCC-----CCCcchhhccccCC---C-CCCCC-C--CC--CCcccccCcceeeeeeeeeeecccCceeeecccccccCCC
Q 025877 85 AGA-----AHNPFDIFESFFGG---G-TFGAG-G--SS--RGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPK 150 (247)
Q Consensus 85 ~~~-----~~~~~~~F~~~Fg~---~-~~~~~-~--~~--~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~ 150 (247)
... +.++.++|.+||+. + .|++. . .+ ....+.++.|+.+.|.|||+|++.|+.+++.+.+.+.|+.
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 161 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA 161 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence 011 12445667766421 1 11110 0 00 0122346889999999999999999999999999999999
Q ss_pred CCCCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCC
Q 025877 151 CKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKG 229 (247)
Q Consensus 151 C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G 229 (247)
|+|+|...+. ..+|+.|+|+|.++... ++++++.+|+.|+|+|. +. ..|+.|+|.|++...++++|.||+|
T Consensus 162 C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----g~~~~~~~C~~C~G~G~-~~--~~C~~C~G~g~v~~~~~l~V~Ip~G 233 (382)
T PRK14291 162 CGGTGYDPGSGEKVCPTCGGSGEIYQRG-----GFFRISQTCPTCGGEGV-LR--EPCSKCNGRGLVIKKETIKVRIPPG 233 (382)
T ss_pred CccccCCCCCCCccCCCCCCceEEEEec-----ceEEEEecCCCCCCceE-Ec--cCCCCCCCCceEEeeeEEEEEeCCC
Confidence 9999998766 46799999999876641 33456799999999995 43 7899999999999999999999999
Q ss_pred CCCCCEEEEccCCCCCC
Q 025877 230 MQHGQKIAFEGQADEAV 246 (247)
Q Consensus 230 ~~~g~~i~~~g~Gd~~~ 246 (247)
|.+|++|+|+|+||+.+
T Consensus 234 ~~~G~~i~~~g~G~~~~ 250 (382)
T PRK14291 234 VDNGSKLRVPGKGHAGR 250 (382)
T ss_pred CCCCCEEEEecCcCCCC
Confidence 99999999999999854
No 26
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-51 Score=363.53 Aligned_cols=223 Identities=36% Similarity=0.733 Sum_probs=183.2
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhh----cCchhhhcC
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQ----YGEDALKEG 81 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~----~g~~~~~~g 81 (247)
...|||+||||+++|+.+|||+|||+||++||||+|++. ++|++|++||++|+||.+|++||+ ||++++..+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 357999999999999999999999999999999998642 799999999999999999999999 998776532
Q ss_pred CC-C-CCCC-CCcc--------------------hhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCcee
Q 025877 82 MG-G-AGAA-HNPF--------------------DIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTK 138 (247)
Q Consensus 82 ~~-~-~~~~-~~~~--------------------~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~ 138 (247)
.+ + ++++ .++. ++|+.||++ ++ ..+...++.|+.+.|.|||+|+++|+.+
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-----~~--~~~~~~~g~di~~~l~lsLee~~~G~~k 159 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-----GG--RRTQPRRGADVESEVTLSFTEAIDGATV 159 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccC-----CC--CCCCCCCCCCEEEEEEEEHHHHhCCceE
Confidence 11 1 0111 1111 223333321 11 1122356889999999999999999999
Q ss_pred eecccccccCCCCCCCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEE
Q 025877 139 KLSLSRNILCPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQ 217 (247)
Q Consensus 139 ~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~ 217 (247)
++.+++.+.|++|+|+|...+. ..+|+.|+|+|.++... |+++ ++.+|+.|+|+|.++. ..|..|.|.|++.
T Consensus 160 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~ 232 (389)
T PRK14295 160 PLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFS-LSEPCPDCKGRGLIAD--DPCLVCKGSGRAK 232 (389)
T ss_pred EEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceE-EEEecCCCcceeEEec--cCCCCCCCCceEe
Confidence 9999999999999999998775 46799999999877654 3333 5689999999999986 8899999999999
Q ss_pred EeEEEEEEecCCCCCCCEEEEccCCCCCC
Q 025877 218 EKKVLEVHVEKGMQHGQKIAFEGQADEAV 246 (247)
Q Consensus 218 ~~~~~~v~Ip~G~~~g~~i~~~g~Gd~~~ 246 (247)
..++++|.||+|+++|++|+|+|+|++.+
T Consensus 233 ~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~ 261 (389)
T PRK14295 233 SSRTMQVRIPAGVSDGQRIRLRGKGAPGE 261 (389)
T ss_pred eeeEEEEEeCCCCCCCCEEEEcccccCCC
Confidence 99999999999999999999999999753
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-51 Score=364.11 Aligned_cols=227 Identities=33% Similarity=0.682 Sum_probs=189.4
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCC-C
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG-G 84 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~-~ 84 (247)
+.++|||++|||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+|+.+|++||+||++++..... +
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~ 81 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQED 81 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccc
Confidence 4578999999999999999999999999999999998643 89999999999999999999999999887642100 0
Q ss_pred ---CCCCC--------Ccchhhccc-cCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCC
Q 025877 85 ---AGAAH--------NPFDIFESF-FGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCK 152 (247)
Q Consensus 85 ---~~~~~--------~~~~~F~~~-Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~ 152 (247)
...+. ++.++|+.| |+ ++. ...+.++.|+.+.|.+||+|++.|+.+++.+.+.+.|+.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~f~~~~fg-----g~~---~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~ 153 (378)
T PRK14283 82 IFNNINFEDIFQGFGFGIGNIFDMFGFG-----GGS---RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCN 153 (378)
T ss_pred cccccCccccccccccchhhhccccccC-----CCC---CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCC
Confidence 00000 111223222 22 111 12234688999999999999999999999999999999999
Q ss_pred CCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCC
Q 025877 153 GKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQ 231 (247)
Q Consensus 153 G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~ 231 (247)
|+|...+. ..+|+.|+|+|++...+++++|+++. ..+|+.|.|+|.++. +.|..|.|+|++...+.++|.||+|++
T Consensus 154 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~ 230 (378)
T PRK14283 154 GSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCPDCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVE 230 (378)
T ss_pred ccccCCCCCCccCCCcCCccEEEEEEeccCceEEE-EEECCCCCccceecC--CCCCCCCCceeeccceeEEEEECCCCC
Confidence 99987665 45799999999999999999998864 579999999999976 889999999999999999999999999
Q ss_pred CCCEEEEccCCCCCC
Q 025877 232 HGQKIAFEGQADEAV 246 (247)
Q Consensus 232 ~g~~i~~~g~Gd~~~ 246 (247)
+|++|+|+|+|++.+
T Consensus 231 ~G~~i~l~g~G~~~~ 245 (378)
T PRK14283 231 TGSRLRVSGEGEMGD 245 (378)
T ss_pred CCcEEEEeccccCCC
Confidence 999999999999753
No 28
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-51 Score=362.23 Aligned_cols=230 Identities=36% Similarity=0.744 Sum_probs=195.0
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCC--C
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA--G 86 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~--~ 86 (247)
.|||++|||+++|+.+|||+|||+||++||||++++. ++|++|++||++|+|+.+|+.||.||+++.....++. +
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 5899999999999999999999999999999999753 8999999999999999999999999987532110100 1
Q ss_pred C-CCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC--ccc
Q 025877 87 A-AHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA--LGK 163 (247)
Q Consensus 87 ~-~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~--~~~ 163 (247)
+ ++++.++|+.||+++++++. ...+++.++.|+.+.+.+||+|+++|+++++.+++.+.|+.|+|+|..... ..+
T Consensus 82 ~~~~d~~d~f~~~fg~~~~~~~--~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~ 159 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGAGFGGG--RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKT 159 (371)
T ss_pred ccCCChHHHHHHhhCCCCcCCC--CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCcc
Confidence 1 13456889999975321111 111223568899999999999999999999999999999999999987654 467
Q ss_pred CCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCC
Q 025877 164 CYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQAD 243 (247)
Q Consensus 164 C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd 243 (247)
|+.|+|+|.+....+..+|+++. +++|+.|+|+|.++. ..|+.|.|+|++....+++|.||+||++|++|+|+|+|+
T Consensus 160 C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~ 236 (371)
T PRK14292 160 CPTCRGAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGN 236 (371)
T ss_pred CCCCCCccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcC
Confidence 99999999999888888888864 789999999999986 899999999999999999999999999999999999999
Q ss_pred CCC
Q 025877 244 EAV 246 (247)
Q Consensus 244 ~~~ 246 (247)
+.+
T Consensus 237 ~~~ 239 (371)
T PRK14292 237 EGP 239 (371)
T ss_pred CCC
Confidence 865
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.9e-51 Score=363.03 Aligned_cols=234 Identities=38% Similarity=0.759 Sum_probs=192.2
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCC
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGA 85 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~ 85 (247)
..+|||++|||+++|+.+|||+|||+||++||||+|+.+ ++|++|++||++|+|+.+|++||+||+.+++.+.+.+
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG 82 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence 468999999999999999999999999999999999743 7999999999999999999999999988765321111
Q ss_pred ---CCCCCcchhh---ccccCCC--CCCC----CCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCC
Q 025877 86 ---GAAHNPFDIF---ESFFGGG--TFGA----GGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKG 153 (247)
Q Consensus 86 ---~~~~~~~~~F---~~~Fg~~--~~~~----~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G 153 (247)
+...++.++| +++|++. +++. ..........++.|+.+.|.|+|+|+++|+++++.+++.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G 162 (386)
T PRK14289 83 GFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHG 162 (386)
T ss_pred CCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCC
Confidence 0011223333 3335421 1000 00001122346889999999999999999999999999999999999
Q ss_pred CCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCC
Q 025877 154 KGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQH 232 (247)
Q Consensus 154 ~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~ 232 (247)
+|..... ...|+.|+|+|.++..+++++|+++. ..+|+.|+|+|.++. ..|+.|.|+|++...++++|.||+|+++
T Consensus 163 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~ 239 (386)
T PRK14289 163 TGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPTCNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGVAE 239 (386)
T ss_pred CCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE-EEecCCCCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCCCC
Confidence 9987654 46799999999999999999999874 899999999999986 8899999999999999999999999999
Q ss_pred CCEEEEccCCCCCC
Q 025877 233 GQKIAFEGQADEAV 246 (247)
Q Consensus 233 g~~i~~~g~Gd~~~ 246 (247)
|++|+|+|+|++.+
T Consensus 240 G~~i~l~g~G~~~~ 253 (386)
T PRK14289 240 GMQLSMNGKGNAGK 253 (386)
T ss_pred CCEEEEeccccCCC
Confidence 99999999999753
No 30
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.4e-51 Score=360.06 Aligned_cols=232 Identities=38% Similarity=0.731 Sum_probs=195.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCC--CC
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG--GA 85 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~--~~ 85 (247)
..|||+||||+++|+.+|||+|||+||++||||+|+++ ++|++|++||++|+|+.+|++||.||+++++.+.+ +.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 36999999999999999999999999999999998753 89999999999999999999999999887653211 11
Q ss_pred CCCCCcchhhccccCCCCCCCC-C-CCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC-cc
Q 025877 86 GAAHNPFDIFESFFGGGTFGAG-G-SSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LG 162 (247)
Q Consensus 86 ~~~~~~~~~F~~~Fg~~~~~~~-~-~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~ 162 (247)
+.+.++.++|++||++.+..++ + ..+.+.+.++.++.+.|.++|+|++.|+.+++.+++.+.|+.|+|+|..... ..
T Consensus 82 ~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (374)
T PRK14293 82 GDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPT 161 (374)
T ss_pred ccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCe
Confidence 1122345788888863111010 0 0111223468899999999999999999999999999999999999998765 45
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCC
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQA 242 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~G 242 (247)
+|+.|+|+|++...+++++|++++ ..+|+.|.|.|+++. ..|+.|.|.|++....+++|.||+|+++|++|+|+|+|
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G 238 (374)
T PRK14293 162 TCSTCGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEG 238 (374)
T ss_pred eCCCCCCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCc
Confidence 799999999999999999998875 589999999999986 88999999999999999999999999999999999999
Q ss_pred CCC
Q 025877 243 DEA 245 (247)
Q Consensus 243 d~~ 245 (247)
++.
T Consensus 239 ~~~ 241 (374)
T PRK14293 239 DAG 241 (374)
T ss_pred cCC
Confidence 975
No 31
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-37 Score=261.20 Aligned_cols=210 Identities=35% Similarity=0.664 Sum_probs=177.5
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCCCCC
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGAA 88 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~~~~ 88 (247)
.|||+||||+++|+..|||.||++||++||||.|.+. ++|++|.+|||+|+|+++|..||.++..+. .+..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~------~~~~ 116 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH------GEFG 116 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc------cccc
Confidence 3999999999999999999999999999999998765 899999999999999999999999998651 1122
Q ss_pred CCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC-cccCCCC
Q 025877 89 HNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LGKCYGC 167 (247)
Q Consensus 89 ~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C 167 (247)
+++.++|..+|++. ......+.++.+.+.++|+++..|..+.+.+.....|.+|.|.|...+. ...|..|
T Consensus 117 g~~~~~~~~~~~~~---------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 187 (288)
T KOG0715|consen 117 GNPFDVFLEFFGGK---------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTC 187 (288)
T ss_pred CCccchHHHhhccc---------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhh
Confidence 36778888888731 1112234567778999999999999999999999999999999988776 4679999
Q ss_pred CCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCC
Q 025877 168 QGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQAD 243 (247)
Q Consensus 168 ~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd 243 (247)
.|.|.........+.+ . +|..|+|.|.+.. +.|..|.|.+.+...+.+.|.||+|+.++.+|++.+.+.
T Consensus 188 ~~~~~~~~~~~~~f~~----~-~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~ 256 (288)
T KOG0715|consen 188 SGRGLVSNPKEDPFIL----Y-TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGN 256 (288)
T ss_pred hCcccccccccCCcce----e-ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCc
Confidence 9999655444333322 2 8999999999987 559999999999999999999999999999999999886
No 32
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-34 Score=238.54 Aligned_cols=207 Identities=40% Similarity=0.659 Sum_probs=147.4
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCC--
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGM-- 82 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~-- 82 (247)
...+|||+||||+++|+..|||+|||+||++||||||+++ +.|++|+.||+||+||++|+.||.||+++++...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~ 92 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD 92 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence 3579999999999999999999999999999999999875 8999999999999999999999999999997431
Q ss_pred CCCCCCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcc
Q 025877 83 GGAGAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALG 162 (247)
Q Consensus 83 ~~~~~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~ 162 (247)
+..+..+ .++|+.||+..++..++.-......++.++...++.++++.+.+..........+.++ |.|+-. -
T Consensus 93 ~~~g~~~--~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~~~-----~ 164 (336)
T KOG0713|consen 93 GEGGGGG--NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGTRK-----C 164 (336)
T ss_pred cccCCcc--cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCcccc-----c
Confidence 1111111 4566666653222111111122356788999999999999999887766555554442 222211 0
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCC
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQA 242 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~G 242 (247)
.|. ..+..++.++|+++.++ +..|..|.+.+.+..+..+++.|..|+..+....+..+|
T Consensus 165 ~~~------~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 223 (336)
T KOG0713|consen 165 NCR------LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEG 223 (336)
T ss_pred CCh------hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccC
Confidence 111 11223334444433322 356777777788888999999999999999999998887
Q ss_pred CC
Q 025877 243 DE 244 (247)
Q Consensus 243 d~ 244 (247)
.+
T Consensus 224 ~~ 225 (336)
T KOG0713|consen 224 EP 225 (336)
T ss_pred Cc
Confidence 65
No 33
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6e-33 Score=237.86 Aligned_cols=160 Identities=44% Similarity=0.773 Sum_probs=124.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCC----
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMG---- 83 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~---- 83 (247)
..|||+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||++|+|+.+|+.||+||++++..+..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 57999999999999999999999999999999999753 89999999999999999999999999875432110
Q ss_pred ---CCCC-----CCCcchhhccccCCC-CCCCCC---CCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCC
Q 025877 84 ---GAGA-----AHNPFDIFESFFGGG-TFGAGG---SSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKC 151 (247)
Q Consensus 84 ---~~~~-----~~~~~~~F~~~Fg~~-~~~~~~---~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C 151 (247)
+.+. +.++.++|+.||++. ++++.+ ......++++.|+.+.+.|||+|++.|+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-------- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC--------
Confidence 0011 124457888998742 111100 00012245688999999999999999998876421
Q ss_pred CCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCC
Q 025877 152 KGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQ 231 (247)
Q Consensus 152 ~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~ 231 (247)
..+++|.||+|++
T Consensus 155 -------------------------------------------------------------------g~~~~V~Ip~G~~ 167 (291)
T PRK14299 155 -------------------------------------------------------------------GERLSVRIPPGVR 167 (291)
T ss_pred -------------------------------------------------------------------CEEEEEecCCCcC
Confidence 1467899999999
Q ss_pred CCCEEEEccCCCCC
Q 025877 232 HGQKIAFEGQADEA 245 (247)
Q Consensus 232 ~g~~i~~~g~Gd~~ 245 (247)
+|++|+|+|+|++.
T Consensus 168 ~G~~ir~~g~G~~~ 181 (291)
T PRK14299 168 EGQVIRLAGKGRQG 181 (291)
T ss_pred CCcEEEECCCCCCC
Confidence 99999999999863
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.8e-32 Score=236.53 Aligned_cols=171 Identities=33% Similarity=0.518 Sum_probs=128.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCch----hhhcC--
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGED----ALKEG-- 81 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~----~~~~g-- 81 (247)
.+|||++|||+++|+.+|||+|||+||++||||+++++ ++|++|++||++|+|+.+|+.||.||.. ++...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 47999999999999999999999999999999998643 8999999999999999999999999854 22211
Q ss_pred CCCC--CCCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCC
Q 025877 82 MGGA--GAAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSG 159 (247)
Q Consensus 82 ~~~~--~~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~ 159 (247)
.+++ ....++.++|+.||++.+ + ..+....+++.|+.+.+.|+|+|++.|+.+.+.+.+.+ |
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~~--~--~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~-------- 146 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQHA--R--QSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y-------- 146 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCCC--C--CCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c--------
Confidence 0111 112345678888887421 1 11112234688999999999999999999988876541 1
Q ss_pred CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 160 ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 160 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
.|.|... ....++++|.||+|+++|++|+|+
T Consensus 147 --------~g~G~~~-----------------------------------------~~~~~~~~V~Ip~G~~~G~~i~~~ 177 (306)
T PRK10266 147 --------NAFGMIE-----------------------------------------QEIPKTLNVKIPAGVGNGQRIRLK 177 (306)
T ss_pred --------cCCCeEE-----------------------------------------EeeeEEEEEEECCCCcCCcEEEEe
Confidence 1222110 012367999999999999999999
Q ss_pred cCCCCCC
Q 025877 240 GQADEAV 246 (247)
Q Consensus 240 g~Gd~~~ 246 (247)
|+|++.+
T Consensus 178 g~G~~~~ 184 (306)
T PRK10266 178 GQGTPGE 184 (306)
T ss_pred cCCcCCC
Confidence 9999753
No 35
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.8e-21 Score=167.30 Aligned_cols=75 Identities=53% Similarity=0.910 Sum_probs=68.9
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCCccccchhhhcCchhhh-
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIYDQYGEDALK- 79 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-------~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~- 79 (247)
..++.|||.+|+|+++||.+||++|||++++.|||||..++ ++|+.|.+|||||+||.+|++||.||+++++
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 45677999999999999999999999999999999998654 6899999999999999999999999999998
Q ss_pred cCC
Q 025877 80 EGM 82 (247)
Q Consensus 80 ~g~ 82 (247)
.|.
T Consensus 85 ~gw 87 (546)
T KOG0718|consen 85 EGW 87 (546)
T ss_pred cCc
Confidence 443
No 36
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-20 Score=154.65 Aligned_cols=70 Identities=59% Similarity=1.005 Sum_probs=65.6
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhh
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~ 79 (247)
...|+|+||||+++|+.++||+|||+|+++||||++++. ++|++||+||++|+|+.+|.+||.||+.++.
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 467899999999999999999999999999999998773 8999999999999999999999999988764
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.81 E-value=2.2e-20 Score=175.55 Aligned_cols=73 Identities=34% Similarity=0.625 Sum_probs=67.6
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhh
Q 025877 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (247)
Q Consensus 7 ~~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~ 79 (247)
.+..+++||+||||+++|+..+||+|||+||++||||+++++ ++|++|++||++|+||.+|+.||.||..++.
T Consensus 568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 355689999999999999999999999999999999999754 7899999999999999999999999988765
No 38
>PHA03102 Small T antigen; Reviewed
Probab=99.81 E-value=1.7e-20 Score=144.25 Aligned_cols=87 Identities=31% Similarity=0.466 Sum_probs=75.5
Q ss_pred CCccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCCC
Q 025877 9 SNNTKYYEILGVSKSA--TEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG 86 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a--~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~~ 86 (247)
.+...+|+||||+++| |.++||+|||++|+++|||+++++++|++|++||++|+|+.+|..||.+|.......
T Consensus 2 ~e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~----- 76 (153)
T PHA03102 2 EESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE----- 76 (153)
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccccc-----
Confidence 4556799999999999 999999999999999999999999999999999999999999999999997654322
Q ss_pred CCCCcchhhccccCC
Q 025877 87 AAHNPFDIFESFFGG 101 (247)
Q Consensus 87 ~~~~~~~~F~~~Fg~ 101 (247)
...+.++|..+||+
T Consensus 77 -~~~~~~~f~~~fg~ 90 (153)
T PHA03102 77 -EDVPSGYVGATFGD 90 (153)
T ss_pred -cccHHHHhhhhcCC
Confidence 12266788888864
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6e-20 Score=155.30 Aligned_cols=88 Identities=45% Similarity=0.746 Sum_probs=76.0
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCC
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG 84 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~ 84 (247)
..+.|||++|||+.+|+..||++|||..|++||||+||++ ++|+.|.+||+||+|+..|..||.++..+....
T Consensus 2 ~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~--- 78 (296)
T KOG0691|consen 2 VKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ--- 78 (296)
T ss_pred cccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch---
Confidence 3478999999999999999999999999999999999875 899999999999999999999999997664321
Q ss_pred CCCCCCcchhhccccCC
Q 025877 85 AGAAHNPFDIFESFFGG 101 (247)
Q Consensus 85 ~~~~~~~~~~F~~~Fg~ 101 (247)
...+..++|...|++
T Consensus 79 --~~~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 79 --GREDQADGFRKKFGS 93 (296)
T ss_pred --hhhhHHHHHHHHhhh
Confidence 345666777777764
No 40
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.1e-19 Score=158.10 Aligned_cols=73 Identities=47% Similarity=0.783 Sum_probs=67.8
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhhhcCchhhhc
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE 80 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~ 80 (247)
+...+.||+||||.++|++.+||++||+||++||||+||+. ++|+.|+.||+|||||..|+.||.+.++-+.+
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 55678999999999999999999999999999999999875 79999999999999999999999988877764
No 41
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.75 E-value=6e-19 Score=117.53 Aligned_cols=59 Identities=51% Similarity=0.907 Sum_probs=55.7
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhh
Q 025877 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYD 71 (247)
Q Consensus 13 ~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD 71 (247)
|||+||||+++++.++||++|+++++.+|||+++.. +.|..|++||++|+++.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999999999999999999997543 68999999999999999999998
No 42
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.73 E-value=5.3e-18 Score=143.69 Aligned_cols=71 Identities=52% Similarity=0.820 Sum_probs=64.1
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCCccccchhhhcCchhhh
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-------~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~ 79 (247)
.+..+|||+||||.++|+..||.+|||+||++||||...+. .+|..|..|-|||+||++|..||+ |++.++
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 45789999999999999999999999999999999987664 579999999999999999999997 555554
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5e-18 Score=136.02 Aligned_cols=68 Identities=49% Similarity=0.858 Sum_probs=62.3
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHhhcCCccccchhhhcCc
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP------EKFKELGQAYEVLSDPEKRDIYDQYGE 75 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~------~~~~~i~~Ay~~l~~~~~r~~yD~~g~ 75 (247)
....+|+|+||||.++|+..+|++||++||++||||+++.. ++|+.|+.||+||+|..+|++||..|.
T Consensus 10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 34566999999999999999999999999999999999642 789999999999999999999999775
No 44
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.70 E-value=1.1e-17 Score=154.30 Aligned_cols=68 Identities=49% Similarity=0.896 Sum_probs=63.4
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhh
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~ 79 (247)
+|||+||||+++|+.++||+|||+|+++||||++++. ++|++|++||++|+|+.+|+.||.||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 6999999999999999999999999999999998654 6899999999999999999999999987654
No 45
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.69 E-value=3.6e-17 Score=107.44 Aligned_cols=55 Identities=69% Similarity=1.055 Sum_probs=50.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHhhcCCccc
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----PEKFKELGQAYEVLSDPEK 66 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~-----~~~~~~i~~Ay~~l~~~~~ 66 (247)
+|||+||||+++++.++||+||++|++.+|||++++ .+.|.+|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999983 2899999999999999853
No 46
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.1e-17 Score=140.35 Aligned_cols=170 Identities=22% Similarity=0.365 Sum_probs=96.4
Q ss_pred CCCCCCCccccccccCC--CCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhhcCchhhh
Q 025877 4 RTPRRSNNTKYYEILGV--SKSATE--DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (247)
Q Consensus 4 ~~~~~~~~~~~y~~Lg~--~~~a~~--~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~ 79 (247)
++++..+-+..|.-|-+ +||.++ ++..+.|++....|.--..+. -..+|+.+..+... .-|..+.
T Consensus 14 k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~e------KRa~YD~fG~~~~~----~gg~gg~- 82 (371)
T COG0484 14 KDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE------KRAAYDQFGHAGFK----AGGFGGF- 82 (371)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHH------HHHHhhccCccccc----cCCcCCC-
Confidence 44445555667776654 444443 344444444444443333333 45688877766554 1221121
Q ss_pred cCCCCCC-CCCCcc-hhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeee--------------ecccCceeeeccc
Q 025877 80 EGMGGAG-AAHNPF-DIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLE--------------DLYNGTTKKLSLS 143 (247)
Q Consensus 80 ~g~~~~~-~~~~~~-~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~--------------e~~~G~~~~~~~~ 143 (247)
++++.+ .+.|+| ++|..-.++ ..+.. ++.++.+...+|.++|+..+. +.|.|+..+.. +
T Consensus 83 -g~~~fgg~~~DIF~~~FgGg~~~-~~~~~--~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~g-t 157 (371)
T COG0484 83 -GFGGFGGDFGDIFEDFFGGGGGG-RRRPN--RPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPG-T 157 (371)
T ss_pred -CcCCCCCCHHHHHHHhhcCCCcc-cCCCC--CcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCC-C
Confidence 222221 555555 566433221 11111 133445555555554444333 77788866644 3
Q ss_pred ccccCCCCCCCCCCCCCc--------ccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEec
Q 025877 144 RNILCPKCKGKGSKSGAL--------GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVIS 202 (247)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~--------~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (247)
..++|++|+|+|.+...+ .+|+.|+|+|.++. .+|+.|+|.|++..
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~-------------~pC~~C~G~G~v~~ 211 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK-------------DPCGKCKGKGRVKK 211 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC-------------CCCCCCCCCCeEee
Confidence 567999999999854322 57999999999765 89999999999643
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4e-17 Score=129.74 Aligned_cols=69 Identities=39% Similarity=0.717 Sum_probs=62.9
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchh
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDA 77 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~ 77 (247)
...-|+|+||||+++|+..|||+|||+|++++|||+++. ++.|..|++||+.|+|+..|..|..||+..
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 356799999999999999999999999999999999755 377899999999999999999999999753
No 48
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.66 E-value=1.8e-16 Score=102.12 Aligned_cols=51 Identities=65% Similarity=1.053 Sum_probs=48.3
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCC
Q 025877 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSD 63 (247)
Q Consensus 13 ~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~ 63 (247)
|||++|||+++++.++||++|++|++++|||+++. .+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999975 3899999999999986
No 49
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.60 E-value=2.3e-15 Score=100.50 Aligned_cols=65 Identities=43% Similarity=0.977 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCc
Q 025877 148 CPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (247)
Q Consensus 148 C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (247)
|+.|+|+|..++. ..+|+.|+|+|+++..++ .++++++++++|+.|+|+|+++ .+++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 8999999996554 567999999999999888 6667778889999999999999 569999999975
No 50
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=4.2e-15 Score=127.46 Aligned_cols=70 Identities=63% Similarity=1.094 Sum_probs=63.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhhhcCchhhhc
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE 80 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~ 80 (247)
..|||++|+|.+.|+.++|++||++||++||||+|+.. .+|.+|++||++|+|+.+|.+||++|++++.+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~ 76 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKG 76 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccccc
Confidence 46899999999999999999999999999999998654 46999999999999999999999999866654
No 51
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.59 E-value=2e-15 Score=110.29 Aligned_cols=56 Identities=25% Similarity=0.526 Sum_probs=52.0
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcC
Q 025877 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLS 62 (247)
Q Consensus 7 ~~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~ 62 (247)
+.++..++|+||||+++++.+|||++||+|++++|||++++++.|++|++||++|.
T Consensus 60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 34556899999999999999999999999999999999888899999999999985
No 52
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-15 Score=125.36 Aligned_cols=67 Identities=57% Similarity=0.921 Sum_probs=62.0
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhhhcC
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYG 74 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD~~g 74 (247)
+....+||+||||+++|+..||++|||++|++||||+++.. +.|+.|++||++|+|+.+|..||.++
T Consensus 2 ~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred chhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45678999999999999999999999999999999998742 88999999999999999999999873
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.8e-15 Score=128.27 Aligned_cols=89 Identities=51% Similarity=0.915 Sum_probs=73.1
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhhhcCchhhhcC
Q 025877 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG 81 (247)
Q Consensus 7 ~~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g 81 (247)
+++...|||+|||++++|+..|||+|||++|+.+|||++... .+|+++-+||.+|+|+.+|..||.-- . +...
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~-d-le~~ 445 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ-D-LEEV 445 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc-c-hhhh
Confidence 466789999999999999999999999999999999998543 68999999999999999999999732 1 1111
Q ss_pred CCCCCCCCCcchhhccc
Q 025877 82 MGGAGAAHNPFDIFESF 98 (247)
Q Consensus 82 ~~~~~~~~~~~~~F~~~ 98 (247)
+++++..+|+++|..+
T Consensus 446 -~~~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 446 -GSGGAGFDPFNIFRAF 461 (486)
T ss_pred -cCCCcCcChhhhhhhc
Confidence 1223567888888776
No 54
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.53 E-value=9.5e-15 Score=115.61 Aligned_cols=61 Identities=25% Similarity=0.459 Sum_probs=54.7
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhh
Q 025877 12 TKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 12 ~~~y~~Lg~~~~--a~~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.|||++|||++. ++..+|+++||+|++++|||+..+. +.|..||+||++|+||.+|+.|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 489999999995 6889999999999999999996432 478999999999999999999985
No 55
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.53 E-value=9e-15 Score=115.05 Aligned_cols=61 Identities=33% Similarity=0.476 Sum_probs=55.2
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCCccccchhhh
Q 025877 12 TKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 12 ~~~y~~Lg~~~~--a~~~~ik~ayr~l~~~~hpd~~~~~-------~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.|||++|||++. ++..+|+++||+|++++|||++.+. ..+..||+||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 489999999996 7899999999999999999998653 347899999999999999999986
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=3.8e-14 Score=112.49 Aligned_cols=63 Identities=27% Similarity=0.426 Sum_probs=55.6
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhh
Q 025877 10 NNTKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~--a~~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
...|||++|||++. ++..+|+++||+|++++|||++... +.+..||+||++|+||.+|+.|+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 34799999999995 6889999999999999999997531 346899999999999999999995
No 57
>PHA02624 large T antigen; Provisional
Probab=99.49 E-value=1.6e-14 Score=132.10 Aligned_cols=69 Identities=32% Similarity=0.524 Sum_probs=64.7
Q ss_pred CCCCCCCCCccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchh
Q 025877 2 FGRTPRRSNNTKYYEILGVSKSA--TEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIY 70 (247)
Q Consensus 2 ~~~~~~~~~~~~~y~~Lg~~~~a--~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~y 70 (247)
|+++.++.+..++|++|||+++| +.++||+|||++|++||||+++++++|++|++||++|+|+.++..|
T Consensus 1 MD~~Ltree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 1 MDKTLSREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred CcchhchHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45666777889999999999999 9999999999999999999999999999999999999999999998
No 58
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=5.2e-14 Score=111.21 Aligned_cols=63 Identities=29% Similarity=0.469 Sum_probs=56.7
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhh
Q 025877 10 NNTKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~--a~~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
...|||++|||++. .+..+|+++||+|++++|||++... +.|..||+||++|+||.+|+.|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 56899999999996 5789999999999999999997532 468999999999999999999995
No 59
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.9e-14 Score=125.75 Aligned_cols=63 Identities=44% Similarity=0.650 Sum_probs=60.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhc
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQY 73 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~ 73 (247)
.+|.|.+|||++++|+++||+.||++|...|||||..+ +.|+.|+.|||+|+|+.+|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 78999999999999999999999999999999999765 8999999999999999999999973
No 60
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.3e-14 Score=116.45 Aligned_cols=64 Identities=41% Similarity=0.778 Sum_probs=59.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhh
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
....|.|+||||+++|+..||.+|||+||+++|||+++++ +.|..|..||++|.|...|..||-
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydy 96 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDY 96 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHH
Confidence 3567999999999999999999999999999999998765 789999999999999999999995
No 61
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=8.4e-13 Score=116.94 Aligned_cols=55 Identities=29% Similarity=0.569 Sum_probs=41.1
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
+.|.|....-. ...+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 144 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 204 (369)
T PRK14288 144 ESCDGTGAKDK--ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK-------------TPCQACKGKTYI 204 (369)
T ss_pred CCCCCcccCCC--CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc-------------ccCccCCCcceE
Confidence 44667665432 4568999999997532 1247999999998654 889999999876
No 62
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=3.8e-13 Score=120.02 Aligned_cols=57 Identities=32% Similarity=0.694 Sum_probs=42.6
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEe
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (247)
..|.|....... ...+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 177 ~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~-------------~~C~~C~G~g~v~ 239 (392)
T PRK14279 177 TTCHGSGARPGT-SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE-------------DPCEECKGTGVTT 239 (392)
T ss_pred CCCccccccCCC-CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC-------------CcCCCCCCCeEEE
Confidence 346677665332 3468999999997642 2357999999998764 8899999998763
No 63
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.5e-12 Score=115.67 Aligned_cols=55 Identities=31% Similarity=0.674 Sum_probs=39.8
Q ss_pred cccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
.|.|....... ....|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 147 ~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 207 (371)
T PRK10767 147 TCHGSGAKPGT-SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK-------------DPCKKCHGQGRV 207 (371)
T ss_pred CCCCcccCCCC-CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC-------------CCCCCCCCCceE
Confidence 45666554332 3458999999997531 2357999999998654 789999999876
No 64
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.34 E-value=9e-13 Score=111.61 Aligned_cols=57 Identities=39% Similarity=0.600 Sum_probs=50.2
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHHHhhcCCc
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----------PEKFKELGQAYEVLSDP 64 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~-----------~~~~~~i~~Ay~~l~~~ 64 (247)
.....++|++|||++++|.+|||+|||+|+++||||+..+ .++|++|++||++|+..
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999999999999532 16899999999999853
No 65
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=3.9e-12 Score=112.90 Aligned_cols=55 Identities=27% Similarity=0.609 Sum_probs=40.5
Q ss_pred cccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
.|.|...... .....|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 150 ~C~G~g~~~~-~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 210 (372)
T PRK14300 150 TCHGSGSEKG-ETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK-------------NPCKKCHGMGRY 210 (372)
T ss_pred CCCCcccCCC-CCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC-------------CCCCCCCCceEE
Confidence 4566655422 23458999999997532 1247999999998764 889999999986
No 66
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=5.3e-11 Score=105.62 Aligned_cols=57 Identities=30% Similarity=0.598 Sum_probs=42.0
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEe
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (247)
..|.|...... ....+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 154 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~~~ 216 (372)
T PRK14286 154 VDCNGSGASKG-SSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS-------------NPCKTCGGQGLQE 216 (372)
T ss_pred CCCcCCCcCCC-CCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec-------------ccCCCCCCCcEEe
Confidence 34667665533 23468999999997532 2357999999998764 7899999999874
No 67
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.25 E-value=3.2e-11 Score=107.59 Aligned_cols=94 Identities=31% Similarity=0.600 Sum_probs=56.6
Q ss_pred chhhccccCCCCCCCCCCCCCcccccCcceeeeeeee-----------ee---ecccCceeeecccccccCCCCCCCCCC
Q 025877 92 FDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVS-----------LE---DLYNGTTKKLSLSRNILCPKCKGKGSK 157 (247)
Q Consensus 92 ~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~s-----------l~---e~~~G~~~~~~~~~~~~C~~C~G~G~~ 157 (247)
.++|+.+|+++..... ....++.+....+.++|+.. .. ..|.|...... ....+|+.|+|+|.+
T Consensus 107 ~~~F~~~fgg~~~~~~-~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~-~~~~~C~~C~G~G~~ 184 (386)
T PRK14277 107 EDIFGDFFGTGRRRAE-TGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPG-SKPVTCPVCHGTGQV 184 (386)
T ss_pred HHhhcccccCCCcCCC-CCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCC-CCCccCCCCCCEEEE
Confidence 4678888875321111 11223444444444433322 22 33566655433 234689999999975
Q ss_pred CC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 158 SG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 158 ~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 185 ~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 224 (386)
T PRK14277 185 RTRQNTPFGRIVNIRTCDRCHGEGKIIT-------------DPCNKCGGTGRI 224 (386)
T ss_pred EEEEeccCceEEEEEECCCCCcceeecc-------------CCCCCCCCCcEE
Confidence 32 1247999999998764 789999999876
No 68
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.23 E-value=4.3e-12 Score=110.83 Aligned_cols=67 Identities=40% Similarity=0.716 Sum_probs=61.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHhhcCCccccchhhhcCchh
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD---------PEKFKELGQAYEVLSDPEKRDIYDQYGEDA 77 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~---------~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~ 77 (247)
--|+|||||++.+++..+||++||+|+.++||||-+. ++.+..|++||+.|+|...|+.|-.||...
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 3489999999999999999999999999999999755 178999999999999999999999998643
No 69
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=1.5e-10 Score=103.46 Aligned_cols=55 Identities=35% Similarity=0.707 Sum_probs=39.5
Q ss_pred cccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
.|.|...... .....|+.|+|+|.+... ..+|+.|+|+|.++. .+|+.|+|+|.+
T Consensus 159 ~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 223 (386)
T PRK14289 159 HCHGTGAEGN-NGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK-------------KKCKKCGGEGIV 223 (386)
T ss_pred CCCCCCCCCC-CCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC-------------cCCCCCCCCcEE
Confidence 4555554422 334689999999976421 246999999998654 789999999876
No 70
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=1.9e-10 Score=102.49 Aligned_cols=54 Identities=31% Similarity=0.686 Sum_probs=38.7
Q ss_pred cccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
.|.|...... .....|+.|+|+|.+.. ...+|+.|+|+|. +. .+|+.|+|.|.+
T Consensus 161 ~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~-------------~~C~~C~G~g~v 220 (382)
T PRK14291 161 ACGGTGYDPG-SGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR-------------EPCSKCNGRGLV 220 (382)
T ss_pred CCccccCCCC-CCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec-------------cCCCCCCCCceE
Confidence 4566655432 23458999999997532 1357999999994 32 789999999876
No 71
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.14 E-value=5.5e-11 Score=94.05 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=54.0
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhh
Q 025877 12 TKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 12 ~~~y~~Lg~~~~--a~~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.|||++|||++. .+..++++.|++|.+++|||+.... +....||+||.+|.||.+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 589999999995 8999999999999999999996432 457889999999999999998864
No 72
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=1.2e-10 Score=103.02 Aligned_cols=57 Identities=25% Similarity=0.605 Sum_probs=41.9
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEe
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (247)
..|+|+...-. .....|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 150 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~ 212 (365)
T PRK14285 150 ESCLGKKSEKG-TSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS-------------NPCKSCKGKGSLK 212 (365)
T ss_pred CCCCCcccCCC-CCCccCCCccCceeEEecCceeEEeeecCCCCCcccccC-------------CCCCCCCCCCEEe
Confidence 34677665532 33458999999997532 2357999999998654 8899999999763
No 73
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.9e-10 Score=102.78 Aligned_cols=56 Identities=34% Similarity=0.710 Sum_probs=40.5
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|+....... ..+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 162 ~~C~G~G~~~~~~-~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 223 (391)
T PRK14284 162 DACSGSGANSSQG-IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT-------------DPCSVCRGQGRI 223 (391)
T ss_pred CCCcccccCCCCC-CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC-------------CcCCCCCCccee
Confidence 3466766654433 458999999997532 1257999999998654 789999998876
No 74
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.7e-11 Score=93.07 Aligned_cols=62 Identities=31% Similarity=0.520 Sum_probs=56.1
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhh
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYD 71 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD 71 (247)
-+.|+|+||.|.|+.+.++||+.||+|++..|||+|+++ ..|..|..||..|-|+..|..-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 478999999999999999999999999999999999986 57999999999999998665443
No 75
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=3e-10 Score=100.82 Aligned_cols=56 Identities=34% Similarity=0.676 Sum_probs=41.0
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|+...-. ....+|+.|+|+|.+... ..+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 156 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 221 (369)
T PRK14282 156 PHCGGTGVEPG-SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG-------------EYCHECGGSGRI 221 (369)
T ss_pred CCCCccCCCCC-CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC-------------CCCCCCCCceeE
Confidence 34667665433 334689999999975321 247999999998654 789999999865
No 76
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=3e-10 Score=101.02 Aligned_cols=56 Identities=32% Similarity=0.689 Sum_probs=41.0
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|....-. .....|+.|+|+|.+... ..+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 143 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 208 (378)
T PRK14278 143 DRCHGKGTAGD-SKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-------------DPCHECAGDGRV 208 (378)
T ss_pred CCCcCccCCCC-CCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-------------CCCCCCCCceeE
Confidence 34666665433 234589999999975311 247999999998654 789999999876
No 77
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=3.5e-10 Score=101.29 Aligned_cols=56 Identities=32% Similarity=0.685 Sum_probs=41.5
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|...... ....|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 167 ~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 231 (397)
T PRK14281 167 KECNGTGSKTG--ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK-------------DRCPACYGEGIK 231 (397)
T ss_pred CCCCCcccCCC--CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC-------------CCCCCCCCCccE
Confidence 34567665533 3568999999997532 1247999999998764 789999999886
Q ss_pred e
Q 025877 201 I 201 (247)
Q Consensus 201 ~ 201 (247)
.
T Consensus 232 ~ 232 (397)
T PRK14281 232 Q 232 (397)
T ss_pred e
Confidence 3
No 78
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=2.5e-10 Score=101.37 Aligned_cols=56 Identities=34% Similarity=0.688 Sum_probs=41.0
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|...... .....|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 148 ~~C~G~G~~~~-~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 209 (373)
T PRK14301 148 DDCGGSGAAPG-TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT-------------HPCPKCKGSGIV 209 (373)
T ss_pred CCCCCcccCCC-CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC-------------CCCCCCCCCcee
Confidence 34566655433 33458999999997532 1357999999998654 789999999876
No 79
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.06 E-value=5.9e-10 Score=81.08 Aligned_cols=61 Identities=26% Similarity=0.625 Sum_probs=49.4
Q ss_pred ccccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEE
Q 025877 144 RNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQE 218 (247)
Q Consensus 144 ~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~ 218 (247)
..+.|..|+|+|.. +|+.|+|+|.+.... ++ .++++.+|+.|+|+|++ .|+.|+|++++..
T Consensus 40 ~~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 35789999999984 899999999877533 32 24567999999999974 4999999998864
No 80
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=4.2e-10 Score=100.45 Aligned_cols=57 Identities=30% Similarity=0.660 Sum_probs=42.0
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEe
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (247)
..|.|....-. ....+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|.|.|.+.
T Consensus 170 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~~~ 232 (389)
T PRK14295 170 PACSGTGAKNG-TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD-------------DPCLVCKGSGRAK 232 (389)
T ss_pred CCCcccccCCC-CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec-------------cCCCCCCCCceEe
Confidence 45667666533 33468999999997532 2357999999998664 8899999998763
No 81
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=4.3e-10 Score=100.20 Aligned_cols=55 Identities=35% Similarity=0.665 Sum_probs=39.8
Q ss_pred cccCceeeecccccccCCCCCCCCCCCC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
.|.|....... ...+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 153 ~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 217 (380)
T PRK14297 153 TCNGTGAKPGT-SPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE-------------DPCNKCHGKGKV 217 (380)
T ss_pred CcccccccCCC-cCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC-------------CCCCCCCCCeEE
Confidence 45666554322 2468999999996531 2357999999998654 789999999854
No 82
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=4.3e-10 Score=99.68 Aligned_cols=54 Identities=35% Similarity=0.754 Sum_probs=40.3
Q ss_pred cccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
.|.|...... ....|+.|+|+|.+... ..+|+.|+|.|.++. .+|+.|+|.|.+
T Consensus 154 ~C~G~g~~~~--~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 217 (365)
T PRK14290 154 DCSGTGAKNG--KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE-------------EKCPRCNGTGTV 217 (365)
T ss_pred CCccccCCCC--CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc-------------CCCCCCCCceeE
Confidence 4666665432 35689999999965311 257999999998654 899999999886
No 83
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=3.6e-10 Score=100.43 Aligned_cols=57 Identities=33% Similarity=0.701 Sum_probs=41.4
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|....... ....|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 145 ~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 210 (377)
T PRK14298 145 STCSGTGAKPGT-SPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE-------------SPCPVCSGTGKV 210 (377)
T ss_pred CCCCCCcccCCC-CCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC-------------CCCCCCCCccEE
Confidence 345676655332 3458999999997532 1257999999998654 789999999976
Q ss_pred e
Q 025877 201 I 201 (247)
Q Consensus 201 ~ 201 (247)
.
T Consensus 211 ~ 211 (377)
T PRK14298 211 R 211 (377)
T ss_pred E
Confidence 3
No 84
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=3.5e-10 Score=100.74 Aligned_cols=56 Identities=32% Similarity=0.654 Sum_probs=40.8
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|....... ...+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 150 ~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~~ 215 (380)
T PRK14276 150 HTCNGSGAKPGT-SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK-------------EPCQTCHGTGHE 215 (380)
T ss_pred CCCcCcccCCCC-CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc-------------CCCCCCCCceEE
Confidence 456776655332 3458999999997532 1257999999998664 789999999875
No 85
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.03 E-value=3.2e-10 Score=88.60 Aligned_cols=50 Identities=30% Similarity=0.389 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhhc
Q 025877 24 ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQY 73 (247)
Q Consensus 24 a~~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~~ 73 (247)
.+..+|+++||+|++++|||+.... +.|..||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 4678999999999999999985321 5799999999999999999999963
No 86
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=4.3e-10 Score=99.78 Aligned_cols=56 Identities=29% Similarity=0.621 Sum_probs=41.1
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|+..... ....+|+.|+|+|.+... ..+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 153 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 218 (372)
T PRK14296 153 SKCFGSGAESN-SDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK-------------NKCKNCKGKGKY 218 (372)
T ss_pred CCCCCCccCCC-CCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec-------------ccccCCCCceEE
Confidence 45566665433 234589999999976421 247999999998764 889999999865
No 87
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=5e-10 Score=99.31 Aligned_cols=56 Identities=29% Similarity=0.629 Sum_probs=40.8
Q ss_pred cccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEe
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (247)
.|.|....... ...+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 149 ~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v~ 210 (366)
T PRK14294 149 ECHGSGCEPGT-SPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV-------------SPCKTCHGQGRVR 210 (366)
T ss_pred CCCCccccCCC-CcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC-------------cCCCCCCCceEee
Confidence 45666554332 3468999999997532 1357999999998654 7899999998763
No 88
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.8e-10 Score=93.61 Aligned_cols=70 Identities=36% Similarity=0.445 Sum_probs=61.6
Q ss_pred CCCCCCccccccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHhhcCCccccchhhhcC
Q 025877 5 TPRRSNNTKYYEILGVSK---SATEDELKKAYRKAAMKNHPDKGG------DPEKFKELGQAYEVLSDPEKRDIYDQYG 74 (247)
Q Consensus 5 ~~~~~~~~~~y~~Lg~~~---~a~~~~ik~ayr~l~~~~hpd~~~------~~~~~~~i~~Ay~~l~~~~~r~~yD~~g 74 (247)
+++.+...|+|.+|||+. .|+..+|.+|.++.+.+||||+.. ..+-|..|+.||++|+|+.+|..||..-
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 356778899999999987 678899999999999999999961 2388999999999999999999999743
No 89
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=9.8e-10 Score=97.74 Aligned_cols=56 Identities=36% Similarity=0.754 Sum_probs=40.7
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|...... .....|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 147 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 212 (376)
T PRK14280 147 DTCHGSGAKPG-TSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK-------------EKCPTCHGKGKV 212 (376)
T ss_pred CCCCCcccCCC-CCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec-------------CCCCCCCCceEE
Confidence 34666665433 23458999999997531 1247999999998654 789999999976
No 90
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.96 E-value=1.4e-09 Score=96.24 Aligned_cols=57 Identities=32% Similarity=0.679 Sum_probs=40.7
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|...... .....|+.|+|+|.+... ..+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 147 ~~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 212 (354)
T TIGR02349 147 ETCHGTGAKPG-TDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-------------EPCSTCKGKGRV 212 (354)
T ss_pred CCCCCCCCCCC-CCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-------------CCCCCCCCCcEe
Confidence 34566655422 234689999999964311 247999999998654 789999999876
Q ss_pred e
Q 025877 201 I 201 (247)
Q Consensus 201 ~ 201 (247)
.
T Consensus 213 ~ 213 (354)
T TIGR02349 213 K 213 (354)
T ss_pred c
Confidence 3
No 91
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=1.2e-09 Score=97.04 Aligned_cols=56 Identities=30% Similarity=0.628 Sum_probs=40.7
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|+...- -....+|+.|+|+|.+... ..+|+.|+|+|.++. .+|+.|+|.|.+
T Consensus 142 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 207 (371)
T PRK14287 142 GTCHGSGAKP-GTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK-------------QKCATCGGKGKV 207 (371)
T ss_pred CCCCCcccCC-CCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc-------------ccCCCCCCeeEE
Confidence 4466766542 2334689999999975321 247999999998654 789999999865
No 92
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.93 E-value=1.7e-09 Score=97.16 Aligned_cols=58 Identities=26% Similarity=0.575 Sum_probs=41.8
Q ss_pred ecccCceeeecccccccCCCCCCCCCCC-----C-----CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKS-----G-----ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~-----~-----~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|+...- ....+|+.|+|+|... + ...+|+.|+|+|.++. ...+|+.|+|.|.+
T Consensus 154 ~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~-----------~~~~C~~C~G~g~v 220 (421)
T PTZ00037 154 ANCEGHGGPK--DAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIP-----------ESKKCKNCSGKGVK 220 (421)
T ss_pred cccCCCCCCC--CCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecc-----------ccccCCcCCCccee
Confidence 4577776532 2456899999999632 1 2347999999998664 12689999999976
Q ss_pred e
Q 025877 201 I 201 (247)
Q Consensus 201 ~ 201 (247)
.
T Consensus 221 ~ 221 (421)
T PTZ00037 221 K 221 (421)
T ss_pred e
Confidence 3
No 93
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=2.1e-09 Score=95.61 Aligned_cols=58 Identities=29% Similarity=0.684 Sum_probs=42.6
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
+.|.|+...........|+.|+|+|.+... ..+|..|+|.|..+. .+|+.|+|.|.+
T Consensus 143 ~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 209 (371)
T PRK14292 143 EHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT-------------DPCTVCRGRGRT 209 (371)
T ss_pred CCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC-------------CCCCCCCCceEE
Confidence 456777665444445789999999975421 247999999998654 889999999876
Q ss_pred e
Q 025877 201 I 201 (247)
Q Consensus 201 ~ 201 (247)
.
T Consensus 210 ~ 210 (371)
T PRK14292 210 L 210 (371)
T ss_pred e
Confidence 3
No 94
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=4.8e-09 Score=93.35 Aligned_cols=57 Identities=28% Similarity=0.606 Sum_probs=41.0
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|....... ....|+.|+|+|.+.. ...+|..|.|.|.++. .+|+.|+|.|.+
T Consensus 147 ~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 212 (374)
T PRK14293 147 ETCRGSGAKPGT-GPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE-------------DPCDACGGQGVK 212 (374)
T ss_pred CCCCCcCCCCCC-CCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec-------------cCCCCCCCCccc
Confidence 345666554333 3458999999997531 1257999999998654 789999999876
Q ss_pred e
Q 025877 201 I 201 (247)
Q Consensus 201 ~ 201 (247)
.
T Consensus 213 ~ 213 (374)
T PRK14293 213 Q 213 (374)
T ss_pred c
Confidence 3
No 95
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=6.5e-09 Score=92.62 Aligned_cols=56 Identities=30% Similarity=0.704 Sum_probs=40.5
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|....... ....|+.|+|+|.+.. ...+|+.|+|+|..+. .+|..|+|.|.+
T Consensus 150 ~~C~G~G~~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~g~v 215 (378)
T PRK14283 150 PVCNGSRAEPGS-EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE-------------KPCSNCHGKGVV 215 (378)
T ss_pred CCCCccccCCCC-CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC-------------CCCCCCCCceee
Confidence 346676654332 3458999999998631 1257999999998654 789999999876
No 96
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.70 E-value=2.5e-08 Score=79.28 Aligned_cols=50 Identities=22% Similarity=0.508 Sum_probs=44.4
Q ss_pred eeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEc
Q 025877 189 HVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFE 239 (247)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~ 239 (247)
.+||.|+|+|.++....+|+.|+|.|.+..++.+.+.+ .|+.+|++|++.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 67888888888887667899999999999999999999 999999999874
No 97
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3e-08 Score=70.30 Aligned_cols=58 Identities=31% Similarity=0.539 Sum_probs=52.5
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCcc
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPE 65 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~ 65 (247)
+++.+..-.||||++.++.+.||+|+|++....|||+.+++-.-.+||||+++|....
T Consensus 52 kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 52 KMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGTS 109 (112)
T ss_pred ccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhccc
Confidence 4566677789999999999999999999999999999999999999999999998643
No 98
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.1e-08 Score=95.80 Aligned_cols=59 Identities=34% Similarity=0.517 Sum_probs=50.3
Q ss_pred CCCCCCccccccccCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHhhcCC
Q 025877 5 TPRRSNNTKYYEILGVSKSA----TEDELKKAYRKAAMKNHPDKGGDP-EKFKELGQAYEVLSD 63 (247)
Q Consensus 5 ~~~~~~~~~~y~~Lg~~~~a----~~~~ik~ayr~l~~~~hpd~~~~~-~~~~~i~~Ay~~l~~ 63 (247)
-|-+++..+.|+||.|+-+- ..+.||++|++||.+|||||||.- ++|.++|+|||.|+.
T Consensus 1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 34466778899999998632 447899999999999999999875 999999999999983
No 99
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.58 E-value=8.1e-08 Score=89.93 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=56.2
Q ss_pred cCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcc
Q 025877 117 QGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRG 196 (247)
Q Consensus 117 ~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G 196 (247)
...+|.+.|.++|+++|+|+.+++.+.+.+.| |.|
T Consensus 655 ~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G----------------------------------------- 689 (871)
T TIGR03835 655 TNVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT----------------------------------------- 689 (871)
T ss_pred cccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC-----------------------------------------
Confidence 35688999999999999999999998776443 111
Q ss_pred cceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCCCCC
Q 025877 197 AGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAVS 247 (247)
Q Consensus 197 ~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~~~~ 247 (247)
...+...++++|.||+|+++|++|+|+|+||+.++
T Consensus 690 ----------------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg 724 (871)
T TIGR03835 690 ----------------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGN 724 (871)
T ss_pred ----------------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCC
Confidence 11335578999999999999999999999998653
No 100
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.6e-07 Score=75.85 Aligned_cols=55 Identities=31% Similarity=0.651 Sum_probs=48.7
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHh-hcCC
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYE-VLSD 63 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~-~l~~ 63 (247)
..-+.+|.+|||...|+.++++.||..||+.+|||...+. +.|..|.+||. ||+.
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999987543 89999999998 7764
No 101
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.34 E-value=1.3e-07 Score=63.03 Aligned_cols=53 Identities=36% Similarity=0.772 Sum_probs=34.7
Q ss_pred cccCceeeecccccccCCCCCCCCCCCCC----------cccCCCCCCCcEEE-EEEeeccceeeEeeeeCCCCcccc
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSGA----------LGKCYGCQGTGMKI-TTRQIGLGMIQQMQHVCPECRGAG 198 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----------~~~C~~C~G~G~~~-~~~~~~~g~~~~~~~~C~~C~G~G 198 (247)
.++|...... ....+|+.|+|+|.+... ..+|+.|+|+|.++ . .+|+.|+|+|
T Consensus 3 ~C~G~G~~~~-~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~-------------~~C~~C~G~g 66 (66)
T PF00684_consen 3 KCNGTGAKPG-KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEK-------------DPCKTCKGSG 66 (66)
T ss_dssp CCTTTSB-ST-TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TS-------------SB-SSSTTSS
T ss_pred cCCCcccCCC-CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECC-------------CCCCCCCCcC
Confidence 3556655422 334599999999987432 24699999999876 3 8999999986
No 102
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.13 E-value=1.2e-06 Score=79.51 Aligned_cols=69 Identities=33% Similarity=0.755 Sum_probs=40.4
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeecc-c----------eeeEeeeeCCCCcccceEecCCCCCCCCCCCc
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGL-G----------MIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~-g----------~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (247)
..|+.|+|+|........|+.|+|+|..-. ..| + +......||+.|+|+|.+.- -..|+.|.|.|
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~---~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v-~~~c~~c~G~g 78 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDD---FDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV-YDTCPECGGTG 78 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccc---cChhhhhhhhhccccccccCCCCCCeeccceeEEE-EeecccCCCce
Confidence 357777777766555556777777776522 111 0 11122357777777776543 36677777766
Q ss_pred EEEE
Q 025877 215 VTQE 218 (247)
Q Consensus 215 ~~~~ 218 (247)
.+-.
T Consensus 79 kv~~ 82 (715)
T COG1107 79 KVLT 82 (715)
T ss_pred eEEe
Confidence 6643
No 103
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.9e-05 Score=66.93 Aligned_cols=60 Identities=32% Similarity=0.810 Sum_probs=40.9
Q ss_pred cccCCCCCCCCCCC--------------------CCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCC
Q 025877 145 NILCPKCKGKGSKS--------------------GALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER 204 (247)
Q Consensus 145 ~~~C~~C~G~G~~~--------------------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~ 204 (247)
.+.|+.|+|.|... +....|..|+|+|. .+|++|+|.|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~----------------~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGI----------------KECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCc----------------ccCCcccCCCC-----
Confidence 35788888888421 11134666777775 78888888886
Q ss_pred CCCCCCCCCcEEEEeEEEEEE
Q 025877 205 DKCPQCKANKVTQEKKVLEVH 225 (247)
Q Consensus 205 ~~C~~C~G~g~~~~~~~~~v~ 225 (247)
.+|.+|.|.|.+.....+.|.
T Consensus 257 k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cccccccCccceeeeEEEEEE
Confidence 679999988887665555554
No 104
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.70 E-value=3.9e-05 Score=55.98 Aligned_cols=49 Identities=31% Similarity=0.682 Sum_probs=37.4
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCCC-------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEec
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA-------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVIS 202 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (247)
..+.|... ..|+.|+|+|..... ..+|+.|+|+|. .+|+.|.|+|.+..
T Consensus 45 ~~C~GsG~-------~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk----------------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 45 FPCSGTGA-------QVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS----------------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCC-------cCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce----------------eeCCCCCCCEEEee
Confidence 45566655 289999999986321 246999999995 46999999999764
No 105
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=3e-05 Score=59.10 Aligned_cols=66 Identities=32% Similarity=0.580 Sum_probs=52.8
Q ss_pred CCCCccccccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHhhcCCccccchhhh
Q 025877 7 RRSNNTKYYEILGVSK--SATEDELKKAYRKAAMKNHPDKGGD---------PEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 7 ~~~~~~~~y~~Lg~~~--~a~~~~ik~ayr~l~~~~hpd~~~~---------~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.+.+.++||.++|... ..++..++.-|--..+++|||+... .+...+||+||.+|.||..|+.|=.
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3567789999997544 4566666668999999999998432 1678999999999999999999863
No 106
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0001 Score=67.37 Aligned_cols=57 Identities=32% Similarity=0.672 Sum_probs=39.6
Q ss_pred cccCceeeecccccccCCCCCCCCCCCCC-------------------cccCCCCCCCcEEEEEEeeccceeeEeeeeCC
Q 025877 132 LYNGTTKKLSLSRNILCPKCKGKGSKSGA-------------------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCP 192 (247)
Q Consensus 132 ~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-------------------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~ 192 (247)
.|.|.++..- ....|+.|+|+|....- -.+|+.|+|+|.+.. ..+|+
T Consensus 7 ~C~g~G~i~v--~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------~~~c~ 72 (715)
T COG1107 7 ECGGKGKIVV--GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------YDTCP 72 (715)
T ss_pred ccCCCceEee--eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------Eeecc
Confidence 3555444322 23479999999975210 147999999998654 37899
Q ss_pred CCcccceEec
Q 025877 193 ECRGAGEVIS 202 (247)
Q Consensus 193 ~C~G~G~~~~ 202 (247)
.|.|+|++..
T Consensus 73 ~c~G~gkv~~ 82 (715)
T COG1107 73 ECGGTGKVLT 82 (715)
T ss_pred cCCCceeEEe
Confidence 9999999853
No 107
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=6.6e-05 Score=63.67 Aligned_cols=77 Identities=23% Similarity=0.594 Sum_probs=49.0
Q ss_pred eeecccCceeeecccc---cccCCCCCCCCCCCCCcccCCCCCCCcEEE--------EEEeec---cceeeEeeeeCCCC
Q 025877 129 LEDLYNGTTKKLSLSR---NILCPKCKGKGSKSGALGKCYGCQGTGMKI--------TTRQIG---LGMIQQMQHVCPEC 194 (247)
Q Consensus 129 l~e~~~G~~~~~~~~~---~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~--------~~~~~~---~g~~~~~~~~C~~C 194 (247)
+..++.|....+.+.. ...|+.|.|.|.. .|+.|+|.|.-. -..-.| +..- ....|..|
T Consensus 168 gp~mf~~~~~~~~vphs~~v~~ch~c~gRG~~-----vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~g--t~~~C~~C 240 (406)
T KOG2813|consen 168 GPGMFSGVAHPAVVPHSMIVTFCHACLGRGAM-----VCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIG--THDLCYMC 240 (406)
T ss_pred CCCcccccccceeccchHhhhhhhcccCCCce-----eccCcCCCCccccccCcceecccccCCCCCCCC--ccchhhhc
Confidence 3344455444444433 3469999999964 799999999311 101111 1111 12579999
Q ss_pred cccceEecCCCCCCCCCCCcEEE
Q 025877 195 RGAGEVISERDKCPQCKANKVTQ 217 (247)
Q Consensus 195 ~G~G~~~~~~~~C~~C~G~g~~~ 217 (247)
+|+|. ..|++|+|.|.+.
T Consensus 241 ~G~G~-----~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 241 HGRGI-----KECHTCKGRGKKP 258 (406)
T ss_pred cCCCc-----ccCCcccCCCCcc
Confidence 99996 7899999998874
No 108
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=97.39 E-value=0.00023 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=19.2
Q ss_pred EEEEEEecCCCCCCCEEEEccCCC
Q 025877 220 KVLEVHVEKGMQHGQKIAFEGQAD 243 (247)
Q Consensus 220 ~~~~v~Ip~G~~~g~~i~~~g~Gd 243 (247)
..++|.||+|+++|++++|+|+|-
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~ 50 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGM 50 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESE
T ss_pred CEEEEeccCccCCCcEEeecCCCC
Confidence 567888999999999999999985
No 109
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=97.08 E-value=0.00076 Score=53.86 Aligned_cols=30 Identities=33% Similarity=0.747 Sum_probs=14.7
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCcEEE
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKI 174 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~ 174 (247)
...|+.|+|+|.......+|+.|+|+|.+.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence 445666666655433223455555555433
No 110
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00043 Score=55.10 Aligned_cols=50 Identities=42% Similarity=0.678 Sum_probs=43.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---H--------HHHHHHHHHHhhc
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD---P--------EKFKELGQAYEVL 61 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~---~--------~~~~~i~~Ay~~l 61 (247)
.+.|.+|++...++..+|+++|+++....|||+-.. + +++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998422 1 6788888888753
No 111
>PRK14299 chaperone protein DnaJ; Provisional
Probab=96.58 E-value=0.0023 Score=55.17 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEEecCCCCCCCEEEEccCCCC
Q 025877 221 VLEVHVEKGMQHGQKIAFEGQADE 244 (247)
Q Consensus 221 ~~~v~Ip~G~~~g~~i~~~g~Gd~ 244 (247)
.++|.||+++++|++|+|+|+|-.
T Consensus 228 ~~~v~ip~~~~~g~~~rl~g~G~p 251 (291)
T PRK14299 228 PVEVTIPPRTQAGRKLRLKGKGWP 251 (291)
T ss_pred CEEEEeCCCcCCCCEEEECCCCCC
Confidence 368899999999999999999965
No 112
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=96.55 E-value=0.0036 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.6
Q ss_pred EEEEEecCCCCCCCEEEEccCCCCC
Q 025877 221 VLEVHVEKGMQHGQKIAFEGQADEA 245 (247)
Q Consensus 221 ~~~v~Ip~G~~~g~~i~~~g~Gd~~ 245 (247)
.++|.||+|+++|++|+|+|+|-..
T Consensus 236 ~v~v~ip~g~~~g~~~ri~g~G~p~ 260 (306)
T PRK10266 236 SILLTIPPGSQAGQRLRVKGKGLVS 260 (306)
T ss_pred cEEEEeCCCcCCCCEEEECCCCCCC
Confidence 3789999999999999999998653
No 113
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.40 E-value=0.0066 Score=45.50 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=41.6
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCcc
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPE 65 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~ 65 (247)
.++......||+|++..+.++|.+.|.+|-..-+|++.++.-.=.+|..|.|.|....
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 3455567899999999999999999999999999999988665567888888877543
No 114
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.39 E-value=0.0035 Score=57.13 Aligned_cols=44 Identities=34% Similarity=0.505 Sum_probs=32.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----------HHHHHHHHHHhh
Q 025877 17 ILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----------EKFKELGQAYEV 60 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----------~~~~~i~~Ay~~ 60 (247)
-+.|..-.+.++||++||+..+.+||||-+.. +.|..+++||..
T Consensus 393 pVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 393 PVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 34455567899999999999999999996432 345555666654
No 115
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.002 Score=51.23 Aligned_cols=60 Identities=30% Similarity=0.481 Sum_probs=47.4
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhh
Q 025877 13 KYYEILGVSKSA--TEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 13 ~~y~~Lg~~~~a--~~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
+++..+++.+.+ ..+.++..|+.+.+.+|||+.... +.+..+|.||.+|.+|..|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 355556666544 345689999999999999997542 468889999999999999998864
No 116
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.011 Score=51.45 Aligned_cols=82 Identities=21% Similarity=0.422 Sum_probs=52.6
Q ss_pred cCCCCCCCCCCCCC-----------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCC---CCCCCCCC
Q 025877 147 LCPKCKGKGSKSGA-----------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER---DKCPQCKA 212 (247)
Q Consensus 147 ~C~~C~G~G~~~~~-----------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~---~~C~~C~G 212 (247)
.|+.|.|+|..... ...|..|+|+|..+. ....|+.|.|++.+-..+ ..=..|..
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~-----------~kd~C~~C~G~~~v~~kkil~v~V~~g~~ 213 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETIS-----------LKDRCKTCSGAKVVREKKILEVHVEPGMP 213 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccc-----------ccccCcccccchhhhhhheeeccccCCCc
Confidence 79999999986421 146999999998643 247999999999873211 11112221
Q ss_pred CcEEEEeEEEEEEecCCCCCCCEEEEcc
Q 025877 213 NKVTQEKKVLEVHVEKGMQHGQKIAFEG 240 (247)
Q Consensus 213 ~g~~~~~~~~~v~Ip~G~~~g~~i~~~g 240 (247)
.+. .....-+..--+++.+|+.+.+--
T Consensus 214 ~~~-ki~f~geadea~g~~pgD~vl~i~ 240 (337)
T KOG0712|consen 214 HGQ-KITFKGEADEAPGTKPGDVVLLID 240 (337)
T ss_pred ccc-eeeeeeeeeecCCCcCccEEEEec
Confidence 111 223355566677888898887643
No 117
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.29 E-value=0.015 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.760 Sum_probs=10.5
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCcE
Q 025877 147 LCPKCKGKGSKSGALGKCYGCQGTGM 172 (247)
Q Consensus 147 ~C~~C~G~G~~~~~~~~C~~C~G~G~ 172 (247)
.|..|.|.+.+ +|..|+|+=.
T Consensus 101 ~C~~Cgg~rfv-----~C~~C~Gs~k 121 (147)
T cd03031 101 VCEGCGGARFV-----PCSECNGSCK 121 (147)
T ss_pred CCCCCCCcCeE-----ECCCCCCcce
Confidence 45555555543 4555555443
No 118
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.086 Score=44.39 Aligned_cols=51 Identities=29% Similarity=0.630 Sum_probs=27.9
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCC
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCK 211 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 211 (247)
-.|..|.|.+.. +|..|+|+=.+...-.. -+. -.+|+.|+=.|-+ .|+.|.
T Consensus 230 ~~C~~CGg~rFl-----pC~~C~GS~kv~~~~~~-~~~----~~rC~~CNENGLv-----rCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARFL-----PCSNCHGSCKVHEEEED-DGG----VLRCLECNENGLV-----RCPVCS 280 (281)
T ss_pred CcCCCcCCcceE-----ecCCCCCceeeeeeccC-CCc----EEECcccCCCCce-----eCCccC
Confidence 357777766665 57777777654431000 111 1567777777653 366664
No 119
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=93.17 E-value=0.2 Score=40.54 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCc
Q 025877 21 SKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDP 64 (247)
Q Consensus 21 ~~~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~ 64 (247)
+++||.+||.+|+.++..+| ..|++.-.+|..||+.+.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998 34556778899999976543
No 120
>PF13446 RPT: A repeated domain in UCH-protein
Probab=92.90 E-value=0.16 Score=32.99 Aligned_cols=47 Identities=26% Similarity=0.500 Sum_probs=35.4
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCC
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSD 63 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~ 63 (247)
+-.+.|+.|||+++.+++.|-.+|+.... .++.....+.+|..++.+
T Consensus 3 ~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 3 DVEEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE 49 (62)
T ss_pred CHHHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence 34568999999999999999999999886 233445556666666654
No 121
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.096 Score=44.10 Aligned_cols=39 Identities=26% Similarity=0.687 Sum_probs=32.6
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEec------CCCCCCCCCCCcEEE
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVIS------ERDKCPQCKANKVTQ 217 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~g~~~ 217 (247)
.|..|.|.+. .||..|+|+-++.. .-.+|..|+-.|.++
T Consensus 231 ~C~~CGg~rF----------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 231 VCESCGGARF----------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred cCCCcCCcce----------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 6999999886 79999999998876 224599999888875
No 122
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.074 Score=45.76 Aligned_cols=60 Identities=28% Similarity=0.564 Sum_probs=42.1
Q ss_pred eeecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEec
Q 025877 129 LEDLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVIS 202 (247)
Q Consensus 129 l~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (247)
..+.+.|...+ .......|..|.|+|.... ...+|..|+|.|.++. ..|..|.|.|.+..
T Consensus 166 ~~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~-------------~~c~~~~g~~~v~~ 231 (288)
T KOG0715|consen 166 DCETCFGSGAE-EGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR-------------DNCQACSGAGQVRR 231 (288)
T ss_pred ccccccCcCcc-cccccccchhhhCcccccccccCCcceeecccccccceecc-------------chHHHhhcchhhhh
Confidence 33566666644 3344569999999994322 1136999999998665 45999999997644
No 123
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.37 E-value=0.53 Score=36.33 Aligned_cols=39 Identities=38% Similarity=0.980 Sum_probs=32.6
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCC-------CCCCCCCCCcEE
Q 025877 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISER-------DKCPQCKANKVT 216 (247)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~G~g~~ 216 (247)
..|..|.|.+. .||+.|+|+-+++... .+|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rf----------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF----------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe----------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 36999999987 8999999999987654 479999987765
No 124
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.46 E-value=0.43 Score=47.57 Aligned_cols=33 Identities=24% Similarity=0.554 Sum_probs=17.9
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccce
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGE 199 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 199 (247)
.|+.|.|.|.+....+.- ..+..+|+.|+|+..
T Consensus 738 ~C~~C~G~G~~~~~~~f~----~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 738 RCEACQGDGVIKIEMHFL----PDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCccceEEEEEccCC----CCcccCCCCcCCcee
Confidence 477777777765433222 223356666666543
No 125
>PRK04023 DNA polymerase II large subunit; Validated
Probab=86.89 E-value=1.1 Score=44.52 Aligned_cols=63 Identities=22% Similarity=0.475 Sum_probs=40.7
Q ss_pred eeccc-CceeeecccccccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCC
Q 025877 130 EDLYN-GTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCP 208 (247)
Q Consensus 130 ~e~~~-G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~ 208 (247)
.+|.. +....+.+... .|+.|.-.+. ...|+.|+..-. ....|+.|.-... ...|+
T Consensus 611 ~~A~~~~g~~eVEVg~R-fCpsCG~~t~----~frCP~CG~~Te--------------~i~fCP~CG~~~~----~y~CP 667 (1121)
T PRK04023 611 NKAAKYKGTIEVEIGRR-KCPSCGKETF----YRRCPFCGTHTE--------------PVYRCPRCGIEVE----EDECE 667 (1121)
T ss_pred HHHHhcCCceeecccCc-cCCCCCCcCC----cccCCCCCCCCC--------------cceeCccccCcCC----CCcCC
Confidence 36665 55555665544 8999988753 347999987611 1157999954432 36799
Q ss_pred CCCCCcE
Q 025877 209 QCKANKV 215 (247)
Q Consensus 209 ~C~G~g~ 215 (247)
.|.-.-.
T Consensus 668 KCG~El~ 674 (1121)
T PRK04023 668 KCGREPT 674 (1121)
T ss_pred CCCCCCC
Confidence 9976433
No 126
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=85.17 E-value=0.99 Score=39.61 Aligned_cols=50 Identities=44% Similarity=0.691 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHhhcCCccccchhhh
Q 025877 23 SATEDELKKAYRKAAMKNHPDKGG--------DPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 23 ~a~~~~ik~ayr~l~~~~hpd~~~--------~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
-++..+|..+|+..++..||++-. ..+.|++|.+||++|.+...|..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 356788999999999999999863 12779999999999998666555554
No 127
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=84.66 E-value=0.9 Score=44.22 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=22.9
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccce
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGE 199 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 199 (247)
.|..|.|.|.+.....+-| .+..||+.|+|+-.
T Consensus 732 RCe~C~GdG~ikIeM~FLp----dVyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLP----DVYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEeccCC----CceeeCCCcCCccc
Confidence 5999999998766555444 33478888887754
No 128
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=84.52 E-value=0.72 Score=46.17 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=16.5
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccc
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAG 198 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 198 (247)
.|+.|.|.|.+....+..+ .+..+|+.|+|+.
T Consensus 740 ~C~~C~G~G~~~~~~~f~~----~~~~~C~~C~G~R 771 (943)
T PRK00349 740 RCEACQGDGVIKIEMHFLP----DVYVPCDVCKGKR 771 (943)
T ss_pred CCCcccccceEEEEeccCC----CccccCccccCcc
Confidence 3777777776654333222 1224555555554
No 129
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=82.95 E-value=0.75 Score=38.18 Aligned_cols=14 Identities=36% Similarity=1.058 Sum_probs=8.3
Q ss_pred eeCCCCcccceEec
Q 025877 189 HVCPECRGAGEVIS 202 (247)
Q Consensus 189 ~~C~~C~G~G~~~~ 202 (247)
.+||+|+|+|+|.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 45666666666544
No 130
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=82.80 E-value=7.6 Score=31.34 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=40.2
Q ss_pred cCCCCCCCcEEEEEEee-cc--ceeeEeeeeCCCCcccceEecCC----CC-------CCCCCCCcEEEEe------EEE
Q 025877 163 KCYGCQGTGMKITTRQI-GL--GMIQQMQHVCPECRGAGEVISER----DK-------CPQCKANKVTQEK------KVL 222 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~-~~--g~~~~~~~~C~~C~G~G~~~~~~----~~-------C~~C~G~g~~~~~------~~~ 222 (247)
.|+.|+..|........ -| +-+--+...|+.|+=+-.-+... .. -+.=..+.+++.+ -.+
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 47777777665544333 33 33444567888887553322100 00 0000001111111 167
Q ss_pred EEEecCC-CCCCCEEEEcc
Q 025877 223 EVHVEKG-MQHGQKIAFEG 240 (247)
Q Consensus 223 ~v~Ip~G-~~~g~~i~~~g 240 (247)
.+.|||| +..|..-.|.|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 8999999 68888877766
No 131
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=81.37 E-value=16 Score=28.59 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.2
Q ss_pred EEEEEecCCCCCCCEEEEcc
Q 025877 221 VLEVHVEKGMQHGQKIAFEG 240 (247)
Q Consensus 221 ~~~v~Ip~G~~~g~~i~~~g 240 (247)
.+.+.||||...|..-.+.|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 77899999998887777665
No 132
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=81.26 E-value=1.1 Score=47.73 Aligned_cols=33 Identities=27% Similarity=0.637 Sum_probs=20.9
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccce
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGE 199 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 199 (247)
.|+.|.|.|.+....+. +..+..+|+.|+|+..
T Consensus 1609 rC~~C~G~G~i~i~m~f----l~dv~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAF----YALEKRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCCccCceEEEeccc----CCCcccCCCCCCCcCC
Confidence 48888888876554333 2234467777777654
No 133
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.12 E-value=0.7 Score=46.13 Aligned_cols=31 Identities=26% Similarity=0.607 Sum_probs=24.6
Q ss_pred eeCCCCcccceEec-------CCCCCCCCCCCcEEEEe
Q 025877 189 HVCPECRGAGEVIS-------ERDKCPQCKANKVTQEK 219 (247)
Q Consensus 189 ~~C~~C~G~G~~~~-------~~~~C~~C~G~g~~~~~ 219 (247)
-.|+.|+|.|.+.. ....|+.|+|++.....
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 45999999999852 23689999998887654
No 134
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=80.78 E-value=2.6 Score=42.94 Aligned_cols=61 Identities=25% Similarity=0.653 Sum_probs=37.3
Q ss_pred cCceeeecccccccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecC---CCCCCCC
Q 025877 134 NGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISE---RDKCPQC 210 (247)
Q Consensus 134 ~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~---~~~C~~C 210 (247)
.+....+.+. ...||.|...... ..|+.|+..=. ....|+.|+.. +... ...|+.|
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~te--------------~vy~CPsCGae--v~~des~a~~CP~C 715 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHTE--------------PVYVCPDCGAE--VPPDESGRVECPRC 715 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCcccc----ccCcccCCcCC--------------CceeCccCCCc--cCCCccccccCCCC
Confidence 3444444544 3589999986532 38999987631 11479999874 1110 2379999
Q ss_pred CCCcE
Q 025877 211 KANKV 215 (247)
Q Consensus 211 ~G~g~ 215 (247)
...-+
T Consensus 716 Gtplv 720 (1337)
T PRK14714 716 DVELT 720 (1337)
T ss_pred CCccc
Confidence 86433
No 135
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=80.15 E-value=1.4 Score=44.18 Aligned_cols=35 Identities=23% Similarity=0.526 Sum_probs=26.3
Q ss_pred eeCCCCcccceEec-------CCCCCCCCCCCcEEEEeEEEE
Q 025877 189 HVCPECRGAGEVIS-------ERDKCPQCKANKVTQEKKVLE 223 (247)
Q Consensus 189 ~~C~~C~G~G~~~~-------~~~~C~~C~G~g~~~~~~~~~ 223 (247)
-.|+.|.|.|.+.. ....|+.|+|++.......++
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~ 780 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVK 780 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCccccccceEEE
Confidence 35999999999852 235899999988877654433
No 136
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=76.57 E-value=5.1 Score=29.38 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCH--------HHHHHHHHHHhhcCC
Q 025877 22 KSATEDELKKAYRKAAMKNHPDKGGDP--------EKFKELGQAYEVLSD 63 (247)
Q Consensus 22 ~~a~~~~ik~ayr~l~~~~hpd~~~~~--------~~~~~i~~Ay~~l~~ 63 (247)
+..+..+++.|.|.+-++.|||.-.+. +-++.++.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 345678899999999999999964332 345666655555543
No 137
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=74.39 E-value=1.8 Score=36.04 Aligned_cols=16 Identities=31% Similarity=0.943 Sum_probs=12.2
Q ss_pred cccCCCCCCCCCCCCC
Q 025877 145 NILCPKCKGKGSKSGA 160 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~ 160 (247)
.++||+|+|+|..+..
T Consensus 38 ~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 38 SVTCPTCQGTGRIPRE 53 (238)
T ss_pred CCcCCCCcCCccCCcc
Confidence 4589999999887653
No 138
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=72.15 E-value=2.7 Score=18.69 Aligned_cols=13 Identities=54% Similarity=0.833 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhcC
Q 025877 50 KFKELGQAYEVLS 62 (247)
Q Consensus 50 ~~~~i~~Ay~~l~ 62 (247)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4777888888774
No 139
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=69.30 E-value=9.4 Score=23.74 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=8.0
Q ss_pred cCCCCCCCcEEE
Q 025877 163 KCYGCQGTGMKI 174 (247)
Q Consensus 163 ~C~~C~G~G~~~ 174 (247)
+||.|+|....+
T Consensus 3 PCPfCGg~~~~~ 14 (53)
T TIGR03655 3 PCPFCGGADVYL 14 (53)
T ss_pred CCCCCCCcceee
Confidence 577777776644
No 140
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=68.48 E-value=16 Score=28.71 Aligned_cols=20 Identities=30% Similarity=0.477 Sum_probs=14.4
Q ss_pred EEEEEecCCC-CCCCEEEEcc
Q 025877 221 VLEVHVEKGM-QHGQKIAFEG 240 (247)
Q Consensus 221 ~~~v~Ip~G~-~~g~~i~~~g 240 (247)
.+.+.||||. ..|..=.+.|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 6788999998 5666555554
No 141
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=67.94 E-value=19 Score=24.10 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=27.8
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 025877 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD 47 (247)
Q Consensus 13 ~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~ 47 (247)
+.-+++++.|-|+..||+.|-++.++++.--..|+
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 45578899999999999999999888875444443
No 142
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=67.89 E-value=1.7 Score=42.39 Aligned_cols=47 Identities=32% Similarity=0.747 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCc
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (247)
..|+.|.-.... ..|+.|+..=.. .-.|+.|+-.- ....|+.|....
T Consensus 656 r~Cp~Cg~~t~~----~~Cp~CG~~T~~--------------~~~Cp~C~~~~----~~~~C~~C~~~~ 702 (900)
T PF03833_consen 656 RRCPKCGKETFY----NRCPECGSHTEP--------------VYVCPDCGIEV----EEDECPKCGRET 702 (900)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccCcccCCcchh----hcCcccCCcccc--------------ceecccccccc----CccccccccccC
Confidence 468888766543 368888754321 24688886542 236899997653
No 143
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.01 E-value=10 Score=28.15 Aligned_cols=53 Identities=25% Similarity=0.252 Sum_probs=37.8
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcC
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLS 62 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~ 62 (247)
.....-.||+|+...+.++|.+.|..|-....+.+.++=-.=.+|-.|-|-|.
T Consensus 57 TlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld 109 (132)
T KOG3442|consen 57 TLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLD 109 (132)
T ss_pred cHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHH
Confidence 33445679999999999999999999999988888765311122334555443
No 144
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=66.37 E-value=2.7 Score=38.17 Aligned_cols=22 Identities=32% Similarity=0.798 Sum_probs=14.4
Q ss_pred cceeeEeeeeCCCCcccceEec
Q 025877 181 LGMIQQMQHVCPECRGAGEVIS 202 (247)
Q Consensus 181 ~g~~~~~~~~C~~C~G~G~~~~ 202 (247)
+.+...+..+||.|+|+|++.+
T Consensus 383 ~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 383 ESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred cChHHHhcCCCCCCcCeeEEcc
Confidence 3334445578888888887754
No 145
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=62.94 E-value=7.6 Score=24.88 Aligned_cols=19 Identities=32% Similarity=0.889 Sum_probs=10.9
Q ss_pred eeCCCCcccceEecCCCCCCCCC
Q 025877 189 HVCPECRGAGEVISERDKCPQCK 211 (247)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~ 211 (247)
.+|..|.=.+.. -.|+.|.
T Consensus 37 ~RC~~CRk~~~~----Y~CP~CG 55 (59)
T PRK14890 37 YRCEKCRKQSNP----YTCPKCG 55 (59)
T ss_pred eechhHHhcCCc----eECCCCC
Confidence 456666655543 3477764
No 146
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=62.38 E-value=5.8 Score=38.94 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=22.9
Q ss_pred eeCCCCcccceEec-------CCCCCCCCCCCcEEEEe
Q 025877 189 HVCPECRGAGEVIS-------ERDKCPQCKANKVTQEK 219 (247)
Q Consensus 189 ~~C~~C~G~G~~~~-------~~~~C~~C~G~g~~~~~ 219 (247)
-.|..|.|.|.+.- ---+|..|+|++.-.++
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~Et 768 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRET 768 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccccce
Confidence 57999999998732 11469999998776543
No 147
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=61.76 E-value=10 Score=29.50 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=18.1
Q ss_pred cCCCCCCCc-EEEEEEeeccceeeEeeeeCCCCccc
Q 025877 163 KCYGCQGTG-MKITTRQIGLGMIQQMQHVCPECRGA 197 (247)
Q Consensus 163 ~C~~C~G~G-~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (247)
.||.|...- .++...-+.+|........|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 577777655 44444444454322222556666544
No 148
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=60.19 E-value=3.2 Score=44.33 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=23.3
Q ss_pred eeCCCCcccceEec-------CCCCCCCCCCCcEEEEe
Q 025877 189 HVCPECRGAGEVIS-------ERDKCPQCKANKVTQEK 219 (247)
Q Consensus 189 ~~C~~C~G~G~~~~-------~~~~C~~C~G~g~~~~~ 219 (247)
-.|+.|+|.|.+.- ..-+|+.|+|++.-...
T Consensus 1608 GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1608 GQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 46999999998732 23479999998877654
No 149
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=60.16 E-value=1.7 Score=30.85 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=7.5
Q ss_pred eeCCCCcccceE
Q 025877 189 HVCPECRGAGEV 200 (247)
Q Consensus 189 ~~C~~C~G~G~~ 200 (247)
..|+.|.|.|..
T Consensus 33 k~c~rcgg~G~s 44 (95)
T PF03589_consen 33 KDCERCGGRGYS 44 (95)
T ss_pred hhhhhhcCCCCC
Confidence 566666666653
No 150
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=59.36 E-value=10 Score=27.72 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=13.0
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCc
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQGTG 171 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G 171 (247)
...|..|............||.|++..
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCCCCC
Confidence 356776664443332223355555444
No 151
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=58.74 E-value=15 Score=19.49 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhCC
Q 025877 26 EDELKKAYRKAAMKNHP 42 (247)
Q Consensus 26 ~~~ik~ayr~l~~~~hp 42 (247)
.++.+.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 37889999999999994
No 152
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=58.26 E-value=18 Score=26.11 Aligned_cols=52 Identities=33% Similarity=0.620 Sum_probs=32.5
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhh-hcCc
Q 025877 19 GVSKSATE-DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD-QYGE 75 (247)
Q Consensus 19 g~~~~a~~-~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD-~~g~ 75 (247)
|++|+... .+|-+.++.++..+++ .+++.+..|.+.| +.|+.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 45555433 3466667777776666 4668888888888 57888888888 5554
No 153
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=57.73 E-value=3.8 Score=24.12 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=3.7
Q ss_pred cCCCCCCCcE
Q 025877 163 KCYGCQGTGM 172 (247)
Q Consensus 163 ~C~~C~G~G~ 172 (247)
+||.|.|+..
T Consensus 5 pCP~CGG~Dr 14 (40)
T PF08273_consen 5 PCPICGGKDR 14 (40)
T ss_dssp --TTTT-TTT
T ss_pred CCCCCcCccc
Confidence 4555555544
No 154
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=56.59 E-value=9.8 Score=36.64 Aligned_cols=49 Identities=27% Similarity=0.753 Sum_probs=30.8
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCC
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKAN 213 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (247)
..||.|.-.-.. ....|+.|+..-. ..+|+.|+-. +......|+.|...
T Consensus 2 ~~Cp~Cg~~n~~--~akFC~~CG~~l~---------------~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENPN--NNRFCQKCGTSLT---------------HKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCCC--CCccccccCCCCC---------------CCcCCCCCCC--CCcccccccccCCc
Confidence 379999776322 2246999944321 1579999766 33345779999753
No 155
>PRK11712 ribonuclease G; Provisional
Probab=55.52 E-value=4.8 Score=37.38 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=17.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 025877 17 ILGVSKSATEDELKKAYRKAAMKNHPD 43 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~~~~hpd 43 (247)
-.|||+....++-|+..+.++..+.|+
T Consensus 138 ~vgiSrKI~de~~R~rLk~i~~~~~~~ 164 (489)
T PRK11712 138 HVGVSQRIESEEERERLKKIVAPYCDE 164 (489)
T ss_pred CeeEecCCCChHHHHHHHHHHHhhCCC
Confidence 356666666666666677776666555
No 156
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=55.46 E-value=14 Score=36.07 Aligned_cols=50 Identities=22% Similarity=0.602 Sum_probs=32.6
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCC
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKAN 213 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (247)
.+.|..|.-. ..|+.|... +.. ++... .-.|..|+-...+. ..|+.|.+.
T Consensus 435 ~l~C~~Cg~v-------~~Cp~Cd~~-lt~--H~~~~------~L~CH~Cg~~~~~p---~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGYI-------AECPNCDSP-LTL--HKATG------QLRCHYCGYQEPIP---QSCPECGSE 484 (730)
T ss_pred eeecccCCCc-------ccCCCCCcc-eEE--ecCCC------eeEeCCCCCCCCCC---CCCCCCCCC
Confidence 4678888543 479999865 212 22111 25799998774433 789999886
No 157
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=54.74 E-value=7.9 Score=24.70 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=12.4
Q ss_pred eeeeeeeecccCceee
Q 025877 124 TLKVSLEDLYNGTTKK 139 (247)
Q Consensus 124 ~l~~sl~e~~~G~~~~ 139 (247)
.++|+|+++.+|..+.
T Consensus 30 RFeIsLeDl~~GE~VA 45 (67)
T COG5216 30 RFEISLEDLRNGEVVA 45 (67)
T ss_pred EeEEEHHHhhCCceEE
Confidence 4889999998886543
No 158
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=54.27 E-value=5.3 Score=22.93 Aligned_cols=8 Identities=38% Similarity=1.302 Sum_probs=3.4
Q ss_pred eCCCCccc
Q 025877 190 VCPECRGA 197 (247)
Q Consensus 190 ~C~~C~G~ 197 (247)
.||.|+..
T Consensus 4 ~CP~C~~~ 11 (37)
T PF13719_consen 4 TCPNCQTR 11 (37)
T ss_pred ECCCCCce
Confidence 34444433
No 159
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=53.35 E-value=16 Score=26.76 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=12.0
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCc
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQGTG 171 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G 171 (247)
..|..|.-.-........||.|++..
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 71 CECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred EEcccCCCEEecCCcCccCcCCcCCC
Confidence 45666664333322223355555444
No 160
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=52.79 E-value=68 Score=21.68 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=27.6
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH
Q 025877 15 YEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP 48 (247)
Q Consensus 15 y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~ 48 (247)
-.+.++.|-|+.+||..|=.+.++|..=-..|+.
T Consensus 6 ~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~ 39 (78)
T PF10041_consen 6 KTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSA 39 (78)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcch
Confidence 3456788999999999999999999876665543
No 161
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=52.41 E-value=30 Score=21.80 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=6.6
Q ss_pred CCCCCCCCcEEE
Q 025877 206 KCPQCKANKVTQ 217 (247)
Q Consensus 206 ~C~~C~G~g~~~ 217 (247)
.|+.|+-.-.+.
T Consensus 30 yCpKCK~EtlI~ 41 (55)
T PF14205_consen 30 YCPKCKQETLID 41 (55)
T ss_pred cCCCCCceEEEE
Confidence 477776544443
No 162
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=52.32 E-value=7.6 Score=28.29 Aligned_cols=25 Identities=32% Similarity=0.808 Sum_probs=19.2
Q ss_pred eeeCCCCcccceEecCCCCCCCCCC
Q 025877 188 QHVCPECRGAGEVISERDKCPQCKA 212 (247)
Q Consensus 188 ~~~C~~C~G~G~~~~~~~~C~~C~G 212 (247)
+..||+|+-.-+.....+.|..|+-
T Consensus 69 ~V~CP~C~K~TKmLGr~D~CM~C~~ 93 (114)
T PF11023_consen 69 QVECPNCGKQTKMLGRVDACMHCKE 93 (114)
T ss_pred eeECCCCCChHhhhchhhccCcCCC
Confidence 4678888877766666788999975
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=52.00 E-value=14 Score=35.95 Aligned_cols=50 Identities=20% Similarity=0.594 Sum_probs=30.0
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCC
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKAN 213 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (247)
.+.|..|.-. ..|+.|.+ ....+. .. -.-.|..|+-+-.. ...|+.|.+.
T Consensus 381 ~~~C~~Cg~~-------~~C~~C~~-~l~~h~-~~-------~~l~Ch~Cg~~~~~---~~~Cp~Cg~~ 430 (679)
T PRK05580 381 FLLCRDCGWV-------AECPHCDA-SLTLHR-FQ-------RRLRCHHCGYQEPI---PKACPECGST 430 (679)
T ss_pred ceEhhhCcCc-------cCCCCCCC-ceeEEC-CC-------CeEECCCCcCCCCC---CCCCCCCcCC
Confidence 4567777544 46999987 332221 10 12468888755332 3689999775
No 164
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=51.35 E-value=63 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=12.2
Q ss_pred cccCCCCCCCCCCCCCc-ccCCCCCCCc
Q 025877 145 NILCPKCKGKGSKSGAL-GKCYGCQGTG 171 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~-~~C~~C~G~G 171 (247)
...|..|.-.-...... ..||.|++..
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCCCc
Confidence 45677776443332221 1255555444
No 165
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=48.79 E-value=30 Score=27.06 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=18.2
Q ss_pred cCCCCCCCcEEEEEEeec--cceeeEeeeeCCCCcccc
Q 025877 163 KCYGCQGTGMKITTRQIG--LGMIQQMQHVCPECRGAG 198 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~--~g~~~~~~~~C~~C~G~G 198 (247)
.|+.|+..|........- ++-+--+...|+.|+=+-
T Consensus 3 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~ 40 (161)
T PF03367_consen 3 LCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKN 40 (161)
T ss_dssp E-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EE
T ss_pred cCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEe
Confidence 477787777654333222 333444567888887553
No 166
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=48.08 E-value=7.2 Score=20.39 Aligned_cols=21 Identities=33% Similarity=0.993 Sum_probs=10.6
Q ss_pred eeCCCCcccceEecCCCCCCCCC
Q 025877 189 HVCPECRGAGEVISERDKCPQCK 211 (247)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~ 211 (247)
..|+.|+- .+......|+.|.
T Consensus 3 ~~Cp~Cg~--~~~~~~~fC~~CG 23 (26)
T PF13248_consen 3 MFCPNCGA--EIDPDAKFCPNCG 23 (26)
T ss_pred CCCcccCC--cCCcccccChhhC
Confidence 45666654 2333345566664
No 167
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.37 E-value=11 Score=35.13 Aligned_cols=51 Identities=25% Similarity=0.587 Sum_probs=30.0
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCc
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (247)
.+.|..|.-. ..|+.|.+. ...+ .... .-.|..|+-+-. ....|+.|.+..
T Consensus 213 ~~~C~~Cg~~-------~~C~~C~~~-l~~h-~~~~-------~l~Ch~Cg~~~~---~~~~Cp~C~s~~ 263 (505)
T TIGR00595 213 NLLCRSCGYI-------LCCPNCDVS-LTYH-KKEG-------KLRCHYCGYQEP---IPKTCPQCGSED 263 (505)
T ss_pred eeEhhhCcCc-------cCCCCCCCc-eEEe-cCCC-------eEEcCCCcCcCC---CCCCCCCCCCCe
Confidence 3568877544 479999753 2222 1111 257888875533 236899997753
No 168
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=47.22 E-value=21 Score=19.95 Aligned_cols=11 Identities=45% Similarity=1.111 Sum_probs=6.1
Q ss_pred cCCCCCCCcEE
Q 025877 163 KCYGCQGTGMK 173 (247)
Q Consensus 163 ~C~~C~G~G~~ 173 (247)
.|..|++.|.+
T Consensus 5 ~C~~C~~~~i~ 15 (33)
T PF08792_consen 5 KCSKCGGNGIV 15 (33)
T ss_pred EcCCCCCCeEE
Confidence 45566666543
No 169
>PRK02935 hypothetical protein; Provisional
Probab=47.18 E-value=12 Score=26.96 Aligned_cols=25 Identities=28% Similarity=0.856 Sum_probs=19.2
Q ss_pred eeeCCCCcccceEecCCCCCCCCCC
Q 025877 188 QHVCPECRGAGEVISERDKCPQCKA 212 (247)
Q Consensus 188 ~~~C~~C~G~G~~~~~~~~C~~C~G 212 (247)
+..||+|+-.-+..-..+.|-.|.-
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~C~~ 94 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMHCNQ 94 (110)
T ss_pred eeECCCCCchhhhccceeecCcCCC
Confidence 4678888877776666788999964
No 170
>PF14353 CpXC: CpXC protein
Probab=46.44 E-value=29 Score=25.71 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=9.1
Q ss_pred eeeCCCCcccceE
Q 025877 188 QHVCPECRGAGEV 200 (247)
Q Consensus 188 ~~~C~~C~G~G~~ 200 (247)
..+||.|+....+
T Consensus 38 ~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 38 SFTCPSCGHKFRL 50 (128)
T ss_pred EEECCCCCCceec
Confidence 3678888777664
No 171
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=45.18 E-value=18 Score=31.49 Aligned_cols=56 Identities=20% Similarity=0.577 Sum_probs=30.4
Q ss_pred ccccCCCCCCCCCC--------CCCc-ccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEe----c------CC
Q 025877 144 RNILCPKCKGKGSK--------SGAL-GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI----S------ER 204 (247)
Q Consensus 144 ~~~~C~~C~G~G~~--------~~~~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~----~------~~ 204 (247)
..-.||.|.+.=.. .|.+ ..|+.|.-.=... +..|+.|.-++.+. . ..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-------------R~~C~~Cg~~~~l~y~~~~~~~~~~r~ 252 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-------------RVKCSNCEQSGKLHYWSLDSEQAAVKA 252 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-------------CccCCCCCCCCceeeeeecCCCcceEe
Confidence 34578888876321 1221 3477776443222 26777777654331 1 12
Q ss_pred CCCCCCCC
Q 025877 205 DKCPQCKA 212 (247)
Q Consensus 205 ~~C~~C~G 212 (247)
..|.+|++
T Consensus 253 e~C~~C~~ 260 (309)
T PRK03564 253 ESCGDCGT 260 (309)
T ss_pred eecccccc
Confidence 45888877
No 172
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=45.16 E-value=31 Score=21.81 Aligned_cols=8 Identities=25% Similarity=0.891 Sum_probs=5.1
Q ss_pred eeCCCCcc
Q 025877 189 HVCPECRG 196 (247)
Q Consensus 189 ~~C~~C~G 196 (247)
..|..|+.
T Consensus 30 V~C~~Cga 37 (61)
T PF14354_consen 30 VECTDCGA 37 (61)
T ss_pred EEcCCCCC
Confidence 55777755
No 173
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=44.75 E-value=13 Score=32.79 Aligned_cols=23 Identities=48% Similarity=1.008 Sum_probs=15.9
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCcEEEE
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKIT 175 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 175 (247)
.+.|..|.|.| |+.|.++|++-.
T Consensus 260 dv~~~~~~g~g--------c~~ck~~~WiEi 282 (339)
T PRK00488 260 DVSCFKCGGKG--------CRVCKGTGWLEI 282 (339)
T ss_pred EEEEeccCCCc--------ccccCCCCceEE
Confidence 35688788765 778888886443
No 174
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=44.33 E-value=33 Score=25.09 Aligned_cols=6 Identities=33% Similarity=1.326 Sum_probs=3.0
Q ss_pred cCCCCC
Q 025877 163 KCYGCQ 168 (247)
Q Consensus 163 ~C~~C~ 168 (247)
.|+.|+
T Consensus 72 ~C~~Cg 77 (113)
T PRK12380 72 WCWDCS 77 (113)
T ss_pred EcccCC
Confidence 355554
No 175
>PRK05978 hypothetical protein; Provisional
Probab=44.00 E-value=13 Score=28.70 Aligned_cols=7 Identities=43% Similarity=1.364 Sum_probs=4.5
Q ss_pred ccCCCCC
Q 025877 162 GKCYGCQ 168 (247)
Q Consensus 162 ~~C~~C~ 168 (247)
.+||.|+
T Consensus 34 grCP~CG 40 (148)
T PRK05978 34 GRCPACG 40 (148)
T ss_pred CcCCCCC
Confidence 3677774
No 176
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=43.63 E-value=19 Score=18.61 Aligned_cols=6 Identities=50% Similarity=1.641 Sum_probs=3.6
Q ss_pred eeCCCC
Q 025877 189 HVCPEC 194 (247)
Q Consensus 189 ~~C~~C 194 (247)
.+||.|
T Consensus 17 f~CPnC 22 (24)
T PF07754_consen 17 FPCPNC 22 (24)
T ss_pred EeCCCC
Confidence 456666
No 177
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=42.17 E-value=13 Score=21.39 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=6.1
Q ss_pred ccCCCCCCCcE
Q 025877 162 GKCYGCQGTGM 172 (247)
Q Consensus 162 ~~C~~C~G~G~ 172 (247)
.+||.|.|+..
T Consensus 4 ~pCP~CGG~Dr 14 (37)
T smart00778 4 GPCPNCGGSDR 14 (37)
T ss_pred cCCCCCCCccc
Confidence 35666665554
No 178
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=41.88 E-value=40 Score=24.66 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=5.3
Q ss_pred eeCCCCcccc
Q 025877 189 HVCPECRGAG 198 (247)
Q Consensus 189 ~~C~~C~G~G 198 (247)
.+||.|++..
T Consensus 87 ~~CP~Cgs~~ 96 (115)
T TIGR00100 87 YRCPKCHGIM 96 (115)
T ss_pred ccCcCCcCCC
Confidence 3455555544
No 179
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=41.61 E-value=8.6 Score=24.11 Aligned_cols=34 Identities=38% Similarity=0.515 Sum_probs=27.8
Q ss_pred CCCCCCCccccccccCCCCCCCHHHHHHHHHHHH
Q 025877 4 RTPRRSNNTKYYEILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 4 ~~~~~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
..|+...-.+.=+.|||++.+-..-|++|-+++.
T Consensus 19 d~PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 19 DVPRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3567777888888999999888888999888875
No 180
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=40.94 E-value=18 Score=21.31 Aligned_cols=9 Identities=33% Similarity=0.822 Sum_probs=5.9
Q ss_pred cCCCCCCCc
Q 025877 163 KCYGCQGTG 171 (247)
Q Consensus 163 ~C~~C~G~G 171 (247)
.|+.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 477776655
No 181
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=40.87 E-value=33 Score=31.90 Aligned_cols=30 Identities=23% Similarity=0.591 Sum_probs=21.2
Q ss_pred ccceeeEeeeeCCCCcccceEecCCCCCCC
Q 025877 180 GLGMIQQMQHVCPECRGAGEVISERDKCPQ 209 (247)
Q Consensus 180 ~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~ 209 (247)
++.+......+||.|.|+|.+......|-.
T Consensus 387 ~~sl~~~~~~~cp~c~G~g~v~~~~~~~~~ 416 (487)
T COG1530 387 RESLLEVLSERCPGCKGTGHVRSTESELLH 416 (487)
T ss_pred CCCCceeeeeECCCceeeEEEecCchhhhh
Confidence 455556667899999999998765444444
No 182
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.42 E-value=31 Score=32.23 Aligned_cols=41 Identities=20% Similarity=0.502 Sum_probs=27.9
Q ss_pred ccccCCCCCCCCCCC--CCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccc
Q 025877 144 RNILCPKCKGKGSKS--GALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAG 198 (247)
Q Consensus 144 ~~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 198 (247)
....|+.|.+.=... .....|..|+-+= .+...||.|++.-
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~--------------~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQE--------------PIPKTCPQCGSED 263 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcC--------------CCCCCCCCCCCCe
Confidence 456899999876643 3345799997432 2347899998863
No 183
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=39.82 E-value=59 Score=24.28 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=18.3
Q ss_pred EeEEEEEEecCCCCCCCEEEEcc
Q 025877 218 EKKVLEVHVEKGMQHGQKIAFEG 240 (247)
Q Consensus 218 ~~~~~~v~Ip~G~~~g~~i~~~g 240 (247)
+...+++.-+.+++.||.+.+.-
T Consensus 40 ~~~~~~~~~~~~~~~GD~V~v~i 62 (135)
T PF04246_consen 40 KPITFRAPNPIGAKVGDRVEVEI 62 (135)
T ss_pred CcEEEEecCCCCCCCCCEEEEEe
Confidence 35677788889999999998853
No 184
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=38.96 E-value=17 Score=26.58 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=10.7
Q ss_pred eeCCCCcccceEecCCCCCCCCCCCc
Q 025877 189 HVCPECRGAGEVISERDKCPQCKANK 214 (247)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (247)
..|..|+-...+-.....||.|.+..
T Consensus 71 ~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PF01155_consen 71 ARCRDCGHEFEPDEFDFSCPRCGSPD 96 (113)
T ss_dssp EEETTTS-EEECHHCCHH-SSSSSS-
T ss_pred EECCCCCCEEecCCCCCCCcCCcCCC
Confidence 44555554444333233455555543
No 185
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=38.82 E-value=30 Score=20.10 Aligned_cols=8 Identities=63% Similarity=1.672 Sum_probs=4.4
Q ss_pred eeCCCCcc
Q 025877 189 HVCPECRG 196 (247)
Q Consensus 189 ~~C~~C~G 196 (247)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 34666655
No 186
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=38.46 E-value=26 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=17.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
++-|+++|+..+||+|..+|-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567889999999999988765
No 187
>PRK14873 primosome assembly protein PriA; Provisional
Probab=37.52 E-value=22 Score=34.50 Aligned_cols=50 Identities=22% Similarity=0.620 Sum_probs=30.1
Q ss_pred cccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCc
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (247)
...|..|.-. ..|+.|.+.=. .+ ... -.-.|..|+-.- . ...|+.|.+..
T Consensus 383 ~l~C~~Cg~~-------~~C~~C~~~L~-~h-~~~-------~~l~Ch~CG~~~--~--p~~Cp~Cgs~~ 432 (665)
T PRK14873 383 SLACARCRTP-------ARCRHCTGPLG-LP-SAG-------GTPRCRWCGRAA--P--DWRCPRCGSDR 432 (665)
T ss_pred eeEhhhCcCe-------eECCCCCCcee-Ee-cCC-------CeeECCCCcCCC--c--CccCCCCcCCc
Confidence 3568877533 47999986422 11 110 125699997642 2 37899997753
No 188
>PHA00626 hypothetical protein
Probab=37.11 E-value=28 Score=22.03 Aligned_cols=6 Identities=33% Similarity=0.905 Sum_probs=3.4
Q ss_pred CCCCCC
Q 025877 205 DKCPQC 210 (247)
Q Consensus 205 ~~C~~C 210 (247)
-.|+.|
T Consensus 24 YkCkdC 29 (59)
T PHA00626 24 YVCCDC 29 (59)
T ss_pred eEcCCC
Confidence 346666
No 189
>PRK05580 primosome assembly protein PriA; Validated
Probab=36.45 E-value=23 Score=34.36 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=26.9
Q ss_pred ccccCCCCCCCCCCC--CCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCccc
Q 025877 144 RNILCPKCKGKGSKS--GALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGA 197 (247)
Q Consensus 144 ~~~~C~~C~G~G~~~--~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (247)
....|+.|.+.=... .....|..|+-+-. ....||.|++.
T Consensus 389 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~--------------~~~~Cp~Cg~~ 430 (679)
T PRK05580 389 WVAECPHCDASLTLHRFQRRLRCHHCGYQEP--------------IPKACPECGST 430 (679)
T ss_pred CccCCCCCCCceeEECCCCeEECCCCcCCCC--------------CCCCCCCCcCC
Confidence 456899999975532 33456999975431 23679999876
No 190
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=36.45 E-value=83 Score=24.82 Aligned_cols=67 Identities=24% Similarity=0.524 Sum_probs=37.7
Q ss_pred cCCCCCCCCC--CCCCcccCCCCCCC----------cEEEEEEeeccceeeEeeeeCCCCcccceEec----CCCCCCCC
Q 025877 147 LCPKCKGKGS--KSGALGKCYGCQGT----------GMKITTRQIGLGMIQQMQHVCPECRGAGEVIS----ERDKCPQC 210 (247)
Q Consensus 147 ~C~~C~G~G~--~~~~~~~C~~C~G~----------G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~----~~~~C~~C 210 (247)
+|.+|.+.|. ..|....|+.|.-+ ...-....++...+ --.|..|-|.-.... .-..|..|
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~F---VLQCr~Cig~~~kKD~~aP~~~~C~~C 77 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDF---VLQCRRCIGIAHKKDPRAPHHGMCQQC 77 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCce---EEechhhcChhhcccCCCCCCCccccc
Confidence 4888875443 34555668888432 22222223333222 256999988866532 23458888
Q ss_pred CCCcEE
Q 025877 211 KANKVT 216 (247)
Q Consensus 211 ~G~g~~ 216 (247)
+..|..
T Consensus 78 ~~~G~~ 83 (175)
T PF15446_consen 78 KKPGPS 83 (175)
T ss_pred CCCCCC
Confidence 877654
No 191
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=35.52 E-value=43 Score=29.52 Aligned_cols=43 Identities=30% Similarity=0.490 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 29 LKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 29 ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
..+..|+...+-.||.+ +.|..++|-.-|+.|++.+||-.+|.
T Consensus 73 WSq~~RRkma~qnP~mH-NSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 73 WSQGQRRKLAKQNPKMH-NSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred hhHHHHHHHHHhCcchh-hHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 45677777778889886 45999999999999999999988884
No 192
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=35.35 E-value=35 Score=19.34 Aligned_cols=7 Identities=43% Similarity=1.592 Sum_probs=3.1
Q ss_pred eCCCCcc
Q 025877 190 VCPECRG 196 (247)
Q Consensus 190 ~C~~C~G 196 (247)
.||.|+.
T Consensus 4 ~Cp~C~~ 10 (36)
T PF13717_consen 4 TCPNCQA 10 (36)
T ss_pred ECCCCCC
Confidence 4444443
No 193
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=35.27 E-value=23 Score=26.00 Aligned_cols=8 Identities=50% Similarity=1.227 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 025877 205 DKCPQCKA 212 (247)
Q Consensus 205 ~~C~~C~G 212 (247)
..|++|.-
T Consensus 13 l~C~~C~t 20 (113)
T PF09862_consen 13 LKCPSCGT 20 (113)
T ss_pred EEcCCCCC
Confidence 44555543
No 194
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=35.04 E-value=24 Score=18.54 Aligned_cols=6 Identities=50% Similarity=1.608 Sum_probs=2.7
Q ss_pred CCCCCC
Q 025877 205 DKCPQC 210 (247)
Q Consensus 205 ~~C~~C 210 (247)
..|+.|
T Consensus 15 ~~Cp~C 20 (26)
T PF10571_consen 15 KFCPHC 20 (26)
T ss_pred CcCCCC
Confidence 344444
No 195
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=33.72 E-value=54 Score=21.43 Aligned_cols=41 Identities=29% Similarity=0.462 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 31 KAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 31 ~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
+..|...+.-||+. ...+..+.|.+.|..|++..+...+|.
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566677789985 345888899999999998877655544
No 196
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=32.35 E-value=52 Score=24.06 Aligned_cols=8 Identities=25% Similarity=0.887 Sum_probs=4.3
Q ss_pred ccCCCCCC
Q 025877 146 ILCPKCKG 153 (247)
Q Consensus 146 ~~C~~C~G 153 (247)
..|..|.-
T Consensus 71 ~~C~~Cg~ 78 (114)
T PRK03681 71 CWCETCQQ 78 (114)
T ss_pred EEcccCCC
Confidence 45666653
No 197
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=32.13 E-value=22 Score=34.78 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=29.0
Q ss_pred ccccCCCCCCCCCCCC--CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCccc
Q 025877 144 RNILCPKCKGKGSKSG--ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGA 197 (247)
Q Consensus 144 ~~~~C~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (247)
....|+.|...=.... ....|..|+-... +...||.|++.
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~--------------~p~~Cp~Cgs~ 484 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQEP--------------IPQSCPECGSE 484 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCCC--------------CCCCCCCCCCC
Confidence 3467999999876543 3467999986532 24789999998
No 198
>CHL00030 rpl23 ribosomal protein L23
Probab=31.36 E-value=40 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
++-|+++|+..|||+|..++-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 466899999999999987764
No 199
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.86 E-value=30 Score=26.15 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=20.1
Q ss_pred eecccccccCCCCCCCCCCCCCcccCCCCC
Q 025877 139 KLSLSRNILCPKCKGKGSKSGALGKCYGCQ 168 (247)
Q Consensus 139 ~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 168 (247)
+..+....+|..|+-+-..+|.-..|..|+
T Consensus 59 KaGv~ddatC~IC~KTKFADG~GH~C~YCq 88 (169)
T KOG3799|consen 59 KAGVGDDATCGICHKTKFADGCGHNCSYCQ 88 (169)
T ss_pred ccccCcCcchhhhhhcccccccCcccchhh
Confidence 344555568888888877776655666664
No 200
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=28.77 E-value=28 Score=23.15 Aligned_cols=52 Identities=29% Similarity=0.676 Sum_probs=21.9
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecC----CCCCCCCCC
Q 025877 147 LCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISE----RDKCPQCKA 212 (247)
Q Consensus 147 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~----~~~C~~C~G 212 (247)
.||.|+-.=...+....|..|... ......||.|+-.=.+.+. .-.|.+|+|
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~--------------~~~~a~CPdC~~~Le~LkACGAvdYFC~~c~g 58 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKD--------------YKKEAFCPDCGQPLEVLKACGAVDYFCNHCHG 58 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--E--------------EEEEEE-TTT-SB-EEEEETTEEEEE-TTTT-
T ss_pred cCCCCCCccEEeCCEEECcccccc--------------ceecccCCCcccHHHHHHHhcccceeeccCCc
Confidence 577777664333334557777642 1123678888765443320 123666665
No 201
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.75 E-value=56 Score=31.75 Aligned_cols=40 Identities=20% Similarity=0.507 Sum_probs=27.7
Q ss_pred ccccCCCCCCCCCCCC--CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccc
Q 025877 144 RNILCPKCKGKGSKSG--ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAG 198 (247)
Q Consensus 144 ~~~~C~~C~G~G~~~~--~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 198 (247)
....|++|.+.=.... ....|..|+-.- ....||.|++.-
T Consensus 391 ~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~---------------~p~~Cp~Cgs~~ 432 (665)
T PRK14873 391 TPARCRHCTGPLGLPSAGGTPRCRWCGRAA---------------PDWRCPRCGSDR 432 (665)
T ss_pred CeeECCCCCCceeEecCCCeeECCCCcCCC---------------cCccCCCCcCCc
Confidence 4568999998877533 345699997431 137899998873
No 202
>TIGR03829 YokU_near_AblA uncharacterized protein, YokU family. Members of this protein family occur in various species of the genus Bacillus, always next to the gene (kamA or ablA) for lysine 2,3-aminomutase. Members have a pair of CXXC motifs, and share homology to the amino-terminal region of a family of putative transcription factors for which the C-terminal is modeled by pfam01381, a helix-turn-helix domain model. This family, however, is shorter and lacks the helix-turn-helix region. The function of this protein family is unknown, but a regulatory role in compatible solute biosynthesis is suggested by local genome context.
Probab=28.27 E-value=85 Score=21.97 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=15.6
Q ss_pred CCCCCCCcEEEEeEEEEEEecCCC
Q 025877 207 CPQCKANKVTQEKKVLEVHVEKGM 230 (247)
Q Consensus 207 C~~C~G~g~~~~~~~~~v~Ip~G~ 230 (247)
|..|++...+....++.+..|.|.
T Consensus 2 C~~C~~~~~~~~~tTv~~el~~G~ 25 (89)
T TIGR03829 2 CRWCEEEKAIARTTTVYWELPDGT 25 (89)
T ss_pred CcccCCCceecceEEEEEEecCCc
Confidence 666666555666677777777653
No 203
>COG1470 Predicted membrane protein [Function unknown]
Probab=27.97 E-value=66 Score=29.68 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=23.7
Q ss_pred EEeEEEEEEecCCCCCCC-EEEEccCCCCC
Q 025877 217 QEKKVLEVHVEKGMQHGQ-KIAFEGQADEA 245 (247)
Q Consensus 217 ~~~~~~~v~Ip~G~~~g~-~i~~~g~Gd~~ 245 (247)
.++..++|++|+++.+|+ +|.|+++-||.
T Consensus 443 ~~tV~ltI~vP~~a~aGdY~i~i~~ksDq~ 472 (513)
T COG1470 443 SKTVSLTITVPEDAGAGDYRITITAKSDQA 472 (513)
T ss_pred cceEEEEEEcCCCCCCCcEEEEEEEeeccc
Confidence 345689999999999998 57788888864
No 204
>PF02019 WIF: WIF domain; InterPro: IPR003306 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. This entry represents the WIF domain, and is found in the RYK tyrosine kinase receptors and WIF the Wnt-inhibitory-factor. The domain is extracellular and contains two conserved cysteines that may form a disulphide bridge. This domain is Wnt binding in WIF, and it has been suggested that RYK may also bind to Wnt [].; GO: 0004713 protein tyrosine kinase activity; PDB: 2YGP_A 2YGO_A 2YGN_A 2D3J_A 2YGQ_A.
Probab=27.92 E-value=88 Score=23.62 Aligned_cols=26 Identities=12% Similarity=0.218 Sum_probs=18.0
Q ss_pred cEEEEeEEEEEEecCCCCCCCEEEEcc
Q 025877 214 KVTQEKKVLEVHVEKGMQHGQKIAFEG 240 (247)
Q Consensus 214 g~~~~~~~~~v~Ip~G~~~g~~i~~~g 240 (247)
|.+..+..+.|..+.+. +++.|+|+=
T Consensus 103 g~a~v~i~lni~~~~~~-n~T~L~~kr 128 (132)
T PF02019_consen 103 GEATVTIQLNITLPSSK-NGTPLRFKR 128 (132)
T ss_dssp EEEEEEEEEEEEETT---S-EEEE--T
T ss_pred eEEEEEEEEEEEeCCCC-CceEEEEee
Confidence 67788889999999998 899998863
No 205
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=27.78 E-value=41 Score=19.19 Aligned_cols=9 Identities=44% Similarity=0.899 Sum_probs=4.4
Q ss_pred cCCCCCCCc
Q 025877 163 KCYGCQGTG 171 (247)
Q Consensus 163 ~C~~C~G~G 171 (247)
.||.|+.+-
T Consensus 7 ~CP~C~s~~ 15 (36)
T PF03811_consen 7 HCPRCQSTE 15 (36)
T ss_pred eCCCCCCCC
Confidence 355555443
No 206
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=27.61 E-value=2.6e+02 Score=20.87 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=27.8
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCC
Q 025877 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKA 212 (247)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G 212 (247)
..|+.|+-..++..... +|...-.-..+|.|+=.-........|+.|..
T Consensus 61 ~~Cp~C~~~~~~~k~~~--~~~~f~~~~~~Pkc~~~~~~~~~~~~cp~c~~ 109 (140)
T COG0551 61 VKCPKCGKGLLVLKKGR--FGKNFLGCSNYPKCRFTEKPKPKEKKCPKCGS 109 (140)
T ss_pred eeCCCCCCCceEEEecc--CCceEEeecCCCcCceeecCCcccccCCcCCC
Confidence 45777775332222211 11111223678888877766556677999987
No 207
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.30 E-value=1e+02 Score=26.84 Aligned_cols=55 Identities=20% Similarity=0.591 Sum_probs=31.1
Q ss_pred cccCCCCCCCCCC---------CCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE--e--c--------
Q 025877 145 NILCPKCKGKGSK---------SGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV--I--S-------- 202 (247)
Q Consensus 145 ~~~C~~C~G~G~~---------~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~--~--~-------- 202 (247)
.-.||.|.+.=.. .|. ...|+.|.-.=..+ +..|+.|.-+..+ + .
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-------------R~~C~~Cg~~~~l~y~~~e~~~~~~~~ 250 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-------------RVKCSHCEESKHLAYLSLEHDAEKAVL 250 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-------------CccCCCCCCCCceeeEeecCCCCCcce
Confidence 3479999876421 122 23588886543322 3678888766533 1 1
Q ss_pred CCCCCCCCCC
Q 025877 203 ERDKCPQCKA 212 (247)
Q Consensus 203 ~~~~C~~C~G 212 (247)
....|..|++
T Consensus 251 r~e~C~~C~~ 260 (305)
T TIGR01562 251 KAETCDSCQG 260 (305)
T ss_pred EEeecccccc
Confidence 1136888887
No 208
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.06 E-value=24 Score=26.65 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=5.6
Q ss_pred eeCCCCcccc
Q 025877 189 HVCPECRGAG 198 (247)
Q Consensus 189 ~~C~~C~G~G 198 (247)
..||.|++..
T Consensus 108 ~~CP~Cgs~~ 117 (135)
T PRK03824 108 LKCPKCGSRD 117 (135)
T ss_pred cCCcCCCCCC
Confidence 3466666554
No 209
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=26.70 E-value=32 Score=27.11 Aligned_cols=24 Identities=42% Similarity=0.951 Sum_probs=14.1
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCcE
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQGTGM 172 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~ 172 (247)
..|..|.+.-++- .+||.|++.|.
T Consensus 163 ilCtvCe~r~w~g---~~CPKCGr~G~ 186 (200)
T PF12387_consen 163 ILCTVCEGREWKG---GNCPKCGRHGK 186 (200)
T ss_pred EEEeeeecCccCC---CCCCcccCCCC
Confidence 4577776665542 24666666664
No 210
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=26.63 E-value=1.3e+02 Score=24.88 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=33.9
Q ss_pred cccccCCCCCCCHHH-HHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhhcC
Q 025877 14 YYEILGVSKSATEDE-LKKAYRKAAMKNHPDK-GGDPEKFKELGQAYEVLS 62 (247)
Q Consensus 14 ~y~~Lg~~~~a~~~~-ik~ayr~l~~~~hpd~-~~~~~~~~~i~~Ay~~l~ 62 (247)
|++|=|-+.-.+.+. ++++|++||.-.--.- +...+.+..+-+-|++|.
T Consensus 82 yw~ir~e~~ll~~~~l~~ksykqla~d~gmqi~~~~~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 82 YWRIRGESTLLDPETLPKKSYKQLARDMGMQIVNEPSEHMLGLLELYEYLK 132 (268)
T ss_pred hheecccccccChhhcchHHHHHHHHHhCceecCCchHHHHHHHHHHHhcC
Confidence 444555444444443 8999999998775443 455588888888999886
No 211
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=26.02 E-value=63 Score=30.06 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=12.8
Q ss_pred CCCCCCCCCCcEEEEeEEEEE
Q 025877 204 RDKCPQCKANKVTQEKKVLEV 224 (247)
Q Consensus 204 ~~~C~~C~G~g~~~~~~~~~v 224 (247)
..-|+.|.+.|+.-.....+|
T Consensus 412 ~~GC~~C~~tGy~GR~~i~Ei 432 (486)
T TIGR02533 412 PVGCPHCNHTGYLGRTGIYEL 432 (486)
T ss_pred CcCchhccCCCCCCeEEEEEE
Confidence 456999988765443444443
No 212
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=25.96 E-value=1.4e+02 Score=17.23 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=9.6
Q ss_pred cCCCCCCCcEEEEEEe
Q 025877 163 KCYGCQGTGMKITTRQ 178 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~ 178 (247)
+|+.|+....+....|
T Consensus 2 ~Cp~C~~~~a~~~q~Q 17 (40)
T smart00440 2 PCPKCGNREATFFQLQ 17 (40)
T ss_pred cCCCCCCCeEEEEEEc
Confidence 4777766666555443
No 213
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=25.90 E-value=72 Score=20.24 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=15.3
Q ss_pred EeEEEEEEecCCCCCCCEEEEcc
Q 025877 218 EKKVLEVHVEKGMQHGQKIAFEG 240 (247)
Q Consensus 218 ~~~~~~v~Ip~G~~~g~~i~~~g 240 (247)
-+.-+.|.||.=++.|++|++.-
T Consensus 26 letG~~i~VP~FI~~Gd~I~VdT 48 (56)
T PF09285_consen 26 LETGAEIQVPLFIEEGDKIKVDT 48 (56)
T ss_dssp ETTS-EEEEETT--TT-EEEEET
T ss_pred EcCCCEEEccceecCCCEEEEEC
Confidence 34456899999999999999864
No 214
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=25.86 E-value=88 Score=24.21 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=11.6
Q ss_pred ceEecCCCCCCCCCCCcEE
Q 025877 198 GEVISERDKCPQCKANKVT 216 (247)
Q Consensus 198 G~~~~~~~~C~~C~G~g~~ 216 (247)
|..+.....|..|.+.=++
T Consensus 22 g~aIRRRReC~~C~~RFTT 40 (156)
T COG1327 22 GNAIRRRRECLECGERFTT 40 (156)
T ss_pred cchhhhhhcccccccccch
Confidence 4445556778888774333
No 215
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=25.84 E-value=61 Score=20.20 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 29 LKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 29 ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
-.+.++...+.-||+.+ ..+....+...|..|++..+...++.
T Consensus 11 f~~~~~~~~~~~~~~~~-~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 11 FSQEHRAEVKAENPGLS-VGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34556777778888844 33778889999999997666554443
No 216
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=25.83 E-value=71 Score=21.16 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.+.++..++.-+|+.. ..+..+.|.+.|..|++..+...++.
T Consensus 13 ~~~~r~~~~~~~p~~~-~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGLT-NNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4567788888899864 44888889999999997766544443
No 217
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=25.54 E-value=78 Score=19.00 Aligned_cols=14 Identities=7% Similarity=0.347 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhC
Q 025877 28 ELKKAYRKAAMKNH 41 (247)
Q Consensus 28 ~ik~ayr~l~~~~h 41 (247)
+.+.+|++|...+.
T Consensus 1 ~a~~~F~~lL~e~~ 14 (51)
T PF01846_consen 1 KAREAFKELLKEHK 14 (51)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCC
Confidence 46889999988876
No 218
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=25.43 E-value=2.1e+02 Score=19.09 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=15.1
Q ss_pred ccCCCCCCCcEEEEEEeeccc
Q 025877 162 GKCYGCQGTGMKITTRQIGLG 182 (247)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g 182 (247)
+.|+.|+..-.+...+....+
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~ 22 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT 22 (72)
T ss_pred ccCCCCCCccEEEEChhcChh
Confidence 468888888877766666654
No 219
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=25.28 E-value=1.3e+02 Score=17.32 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=9.7
Q ss_pred cCCCCCCCcEEEEEEee
Q 025877 163 KCYGCQGTGMKITTRQI 179 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~ 179 (247)
+|+.|+.........|+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~ 18 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQT 18 (39)
T ss_dssp --SSS-SSEEEEEEESS
T ss_pred CCcCCCCCeEEEEEeec
Confidence 57888887776665554
No 220
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=25.23 E-value=62 Score=21.95 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=17.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
.+-|+++|+..|||+|..++-
T Consensus 18 ~F~V~~~anK~eIK~avE~lf 38 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLF 38 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 456889999999999988874
No 221
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=24.81 E-value=65 Score=20.20 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 33 YRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 33 yr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.|...+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 15 ~r~~~~~~~p~~~-~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 15 QRPKLKKENPDAS-VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4555566788843 34788999999999997766554444
No 222
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.60 E-value=56 Score=20.88 Aligned_cols=9 Identities=44% Similarity=1.210 Sum_probs=4.2
Q ss_pred eeCCCCccc
Q 025877 189 HVCPECRGA 197 (247)
Q Consensus 189 ~~C~~C~G~ 197 (247)
..||.|.|.
T Consensus 18 e~Cp~CG~~ 26 (59)
T COG2260 18 EKCPVCGGD 26 (59)
T ss_pred ccCCCCCCc
Confidence 445555444
No 223
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=24.35 E-value=16 Score=24.48 Aligned_cols=30 Identities=33% Similarity=0.681 Sum_probs=20.0
Q ss_pred ccccccccCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 025877 11 NTKYYEILGVSKSATEDEL-KKAYRKAAMKNHPDK 44 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~i-k~ayr~l~~~~hpd~ 44 (247)
+.+++++||+++ +++ ...+..+....|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 456889998876 555 556677888899993
No 224
>PRK10613 hypothetical protein; Provisional
Probab=23.89 E-value=31 Score=22.97 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=8.6
Q ss_pred CHHHHHHHHHH
Q 025877 25 TEDELKKAYRK 35 (247)
Q Consensus 25 ~~~~ik~ayr~ 35 (247)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 55789999984
No 225
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=23.51 E-value=1.2e+02 Score=19.84 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=19.1
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
.+||.|...=..+... .++. ...|..|...|-.
T Consensus 7 KPCPFCG~~~~~v~~~-~g~~-----~v~C~~CgA~~~~ 39 (64)
T PRK09710 7 KPCPFCGCPSVTVKAI-SGYY-----RAKCNGCESRTGY 39 (64)
T ss_pred cCCCCCCCceeEEEec-CceE-----EEEcCCCCcCccc
Confidence 4677777665554432 2221 3678888776644
No 226
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=23.32 E-value=70 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCC
Q 025877 21 SKSATEDELKKAYRKAAMKNHPDKG 45 (247)
Q Consensus 21 ~~~a~~~~ik~ayr~l~~~~hpd~~ 45 (247)
.....+.+|...|.+-|.++.||-.
T Consensus 96 ~t~~pq~~i~HvYL~~A~~LRPDl~ 120 (125)
T COG4401 96 NTQKPQSEIHHVYLREAVVLRPDLS 120 (125)
T ss_pred cCCCCchHHHHHHHhhhhccCcccc
Confidence 3456788999999999999999964
No 227
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=23.27 E-value=49 Score=15.61 Aligned_cols=10 Identities=30% Similarity=0.956 Sum_probs=5.3
Q ss_pred CCCCcccceE
Q 025877 191 CPECRGAGEV 200 (247)
Q Consensus 191 C~~C~G~G~~ 200 (247)
|-.|+..|.+
T Consensus 3 C~~C~~~GH~ 12 (18)
T PF00098_consen 3 CFNCGEPGHI 12 (18)
T ss_dssp CTTTSCSSSC
T ss_pred CcCCCCcCcc
Confidence 5555555543
No 228
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=23.21 E-value=42 Score=30.51 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=9.8
Q ss_pred ccCCCCCCCcEEE
Q 025877 162 GKCYGCQGTGMKI 174 (247)
Q Consensus 162 ~~C~~C~G~G~~~ 174 (247)
.+|+.|+|+|.+.
T Consensus 391 ~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 391 TVCPHCSGTGIVK 403 (414)
T ss_pred CCCCCCcCeeEEc
Confidence 4688888888754
No 229
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=23.16 E-value=76 Score=20.12 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=19.4
Q ss_pred EeEEEEEEecCCCCCCCEEEEccC
Q 025877 218 EKKVLEVHVEKGMQHGQKIAFEGQ 241 (247)
Q Consensus 218 ~~~~~~v~Ip~G~~~g~~i~~~g~ 241 (247)
.+.-++|.||.=++.|++|++.-.
T Consensus 26 letG~~i~VP~FI~~Gd~I~V~T~ 49 (56)
T smart00841 26 LETGAVVQVPLFINEGDKIKVDTR 49 (56)
T ss_pred ECCCCEEEcCCcccCCCEEEEECC
Confidence 344678999999999999988643
No 230
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=23.13 E-value=69 Score=22.45 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=17.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
++-|++.|+..|||+|..++-
T Consensus 24 ~F~V~~~a~K~eIK~aie~lf 44 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKLF 44 (92)
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 456889999999999887764
No 231
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=22.50 E-value=34 Score=22.77 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=8.6
Q ss_pred CHHHHHHHHHH
Q 025877 25 TEDELKKAYRK 35 (247)
Q Consensus 25 ~~~~ik~ayr~ 35 (247)
+..+||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 55789999984
No 232
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=22.47 E-value=51 Score=25.37 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=5.5
Q ss_pred eeCCCCcccce
Q 025877 189 HVCPECRGAGE 199 (247)
Q Consensus 189 ~~C~~C~G~G~ 199 (247)
.|||.|+++-.
T Consensus 131 ~~Cp~C~~~~F 141 (146)
T PF07295_consen 131 PPCPKCGHTEF 141 (146)
T ss_pred CCCCCCCCCee
Confidence 35555555443
No 233
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.44 E-value=1.1e+02 Score=22.79 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=5.1
Q ss_pred cccCCCCCCC
Q 025877 145 NILCPKCKGK 154 (247)
Q Consensus 145 ~~~C~~C~G~ 154 (247)
...| .|.-.
T Consensus 70 ~~~C-~Cg~~ 78 (124)
T PRK00762 70 EIEC-ECGYE 78 (124)
T ss_pred eEEe-eCcCc
Confidence 3457 66644
No 234
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.30 E-value=39 Score=21.97 Aligned_cols=14 Identities=43% Similarity=0.722 Sum_probs=10.7
Q ss_pred eeeeeeecccCcee
Q 025877 125 LKVSLEDLYNGTTK 138 (247)
Q Consensus 125 l~~sl~e~~~G~~~ 138 (247)
+.|+++++.+|..+
T Consensus 31 f~It~edL~~ge~V 44 (67)
T KOG2923|consen 31 FQITLEDLENGEDV 44 (67)
T ss_pred eeecHHHHhCCCee
Confidence 78888888877644
No 235
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.22 E-value=29 Score=25.70 Aligned_cols=7 Identities=29% Similarity=0.914 Sum_probs=3.9
Q ss_pred CCCCCCC
Q 025877 204 RDKCPQC 210 (247)
Q Consensus 204 ~~~C~~C 210 (247)
.+.|..|
T Consensus 40 ~p~C~aC 46 (126)
T COG5349 40 VPACEAC 46 (126)
T ss_pred Cchhhhc
Confidence 3556666
No 236
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=22.13 E-value=69 Score=28.32 Aligned_cols=23 Identities=30% Similarity=0.771 Sum_probs=16.7
Q ss_pred eeeeCCCCcccceEecCCCCCCCCCCCcEEE
Q 025877 187 MQHVCPECRGAGEVISERDKCPQCKANKVTQ 217 (247)
Q Consensus 187 ~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~ 217 (247)
+-..|..|+|.| |+.|++.|++.
T Consensus 259 vdv~~~~~~g~g--------c~~ck~~~WiE 281 (339)
T PRK00488 259 VDVSCFKCGGKG--------CRVCKGTGWLE 281 (339)
T ss_pred EEEEEeccCCCc--------ccccCCCCceE
Confidence 345688888765 88888887765
No 237
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.81 E-value=96 Score=18.10 Aligned_cols=8 Identities=50% Similarity=1.240 Sum_probs=4.0
Q ss_pred eeCCCCcc
Q 025877 189 HVCPECRG 196 (247)
Q Consensus 189 ~~C~~C~G 196 (247)
..||.|++
T Consensus 27 ~~CP~Cg~ 34 (42)
T PF09723_consen 27 VPCPECGS 34 (42)
T ss_pred CcCCCCCC
Confidence 44555544
No 238
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.13 E-value=78 Score=22.98 Aligned_cols=7 Identities=57% Similarity=1.521 Sum_probs=3.4
Q ss_pred eeCCCCc
Q 025877 189 HVCPECR 195 (247)
Q Consensus 189 ~~C~~C~ 195 (247)
..||.|+
T Consensus 27 ivCP~CG 33 (108)
T PF09538_consen 27 IVCPKCG 33 (108)
T ss_pred ccCCCCC
Confidence 4455553
No 239
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=20.72 E-value=1.3e+02 Score=18.91 Aligned_cols=7 Identities=29% Similarity=0.985 Sum_probs=4.5
Q ss_pred cCCCCCC
Q 025877 163 KCYGCQG 169 (247)
Q Consensus 163 ~C~~C~G 169 (247)
+|+.|..
T Consensus 4 ~CP~CG~ 10 (54)
T TIGR01206 4 ECPDCGA 10 (54)
T ss_pred CCCCCCC
Confidence 5777754
No 240
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=20.63 E-value=91 Score=16.55 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.9
Q ss_pred cCCCCCCCc
Q 025877 163 KCYGCQGTG 171 (247)
Q Consensus 163 ~C~~C~G~G 171 (247)
+|+.|+..=
T Consensus 3 ~C~rC~~~~ 11 (30)
T PF06827_consen 3 KCPRCWNYI 11 (30)
T ss_dssp B-TTT--BB
T ss_pred cCccCCCcc
Confidence 577777663
No 241
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=20.56 E-value=1.1e+02 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.841 Sum_probs=9.8
Q ss_pred ceEecCCCCCCCCCCC
Q 025877 198 GEVISERDKCPQCKAN 213 (247)
Q Consensus 198 G~~~~~~~~C~~C~G~ 213 (247)
|..+.....|..|.-.
T Consensus 22 g~~IRRRReC~~C~~R 37 (147)
T TIGR00244 22 GQSIRRRRECLECHER 37 (147)
T ss_pred CCeeeecccCCccCCc
Confidence 4445555778887753
No 242
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=20.48 E-value=53 Score=23.49 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=5.5
Q ss_pred ccccCCCCC
Q 025877 144 RNILCPKCK 152 (247)
Q Consensus 144 ~~~~C~~C~ 152 (247)
....|+.|+
T Consensus 20 t~f~CP~Cg 28 (99)
T PRK14892 20 KIFECPRCG 28 (99)
T ss_pred cEeECCCCC
Confidence 345677776
No 243
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.19 E-value=88 Score=21.60 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=17.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
.+-|+++|+..|||+|..++-
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELF 45 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 456889999999999988874
No 244
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=20.13 E-value=69 Score=20.33 Aligned_cols=8 Identities=50% Similarity=1.572 Sum_probs=3.6
Q ss_pred eeCCCCcc
Q 025877 189 HVCPECRG 196 (247)
Q Consensus 189 ~~C~~C~G 196 (247)
..||.|++
T Consensus 18 ~~CP~CG~ 25 (56)
T PRK13130 18 EICPVCGG 25 (56)
T ss_pred ccCcCCCC
Confidence 44444443
Done!