Query 025877
Match_columns 247
No_of_seqs 252 out of 1821
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 19:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 5.9E-37 2E-41 264.9 7.7 174 8-246 24-207 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 8.8E-32 3E-36 224.5 13.8 132 115-247 8-139 (248)
3 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.3E-24 4.3E-29 157.7 4.5 90 11-100 2-98 (103)
4 2ctr_A DNAJ homolog subfamily 99.9 3.2E-23 1.1E-27 145.9 7.3 74 8-81 3-79 (88)
5 2o37_A Protein SIS1; HSP40, J- 99.9 2.8E-23 9.7E-28 147.4 6.1 74 8-81 4-78 (92)
6 2och_A Hypothetical protein DN 99.9 2.4E-23 8.1E-28 141.5 5.3 69 8-76 4-73 (73)
7 1hdj_A Human HSP40, HDJ-1; mol 99.9 4.1E-23 1.4E-27 141.8 6.2 70 11-80 2-74 (77)
8 2ej7_A HCG3 gene; HCG3 protein 99.9 9.4E-23 3.2E-27 141.7 5.9 71 8-78 5-80 (82)
9 2ctp_A DNAJ homolog subfamily 99.9 9.8E-23 3.3E-27 140.3 5.1 70 8-77 3-75 (78)
10 2dn9_A DNAJ homolog subfamily 99.9 1.3E-22 4.5E-27 140.0 5.4 70 8-77 3-76 (79)
11 2dmx_A DNAJ homolog subfamily 99.9 1.5E-22 5.3E-27 143.7 5.3 73 8-80 5-82 (92)
12 2ctt_A DNAJ homolog subfamily 99.9 1.9E-22 6.6E-27 146.3 5.2 101 119-226 2-103 (104)
13 2cug_A Mkiaa0962 protein; DNAJ 99.9 2.9E-22 9.8E-27 141.0 4.8 69 8-76 13-84 (88)
14 2yua_A Williams-beuren syndrom 99.9 1E-21 3.5E-26 141.2 7.7 73 7-79 12-90 (99)
15 2ctq_A DNAJ homolog subfamily 99.8 4E-22 1.4E-26 146.5 4.9 72 8-79 16-91 (112)
16 2lgw_A DNAJ homolog subfamily 99.8 3E-22 1E-26 143.7 3.7 69 12-80 2-75 (99)
17 2ctw_A DNAJ homolog subfamily 99.8 1.2E-21 4.1E-26 143.2 6.6 72 8-79 13-88 (109)
18 1wjz_A 1700030A21RIK protein; 99.8 3.8E-21 1.3E-25 137.0 4.5 68 8-75 12-89 (94)
19 1faf_A Large T antigen; J doma 99.8 1.1E-21 3.9E-26 134.9 1.6 73 3-76 2-76 (79)
20 2pf4_E Small T antigen; PP2A, 99.8 5.7E-22 2E-26 155.0 -1.5 73 3-75 2-76 (174)
21 3apq_A DNAJ homolog subfamily 99.8 1.7E-20 5.8E-25 152.6 5.2 86 12-100 2-91 (210)
22 1gh6_A Large T antigen; tumor 99.8 2.3E-21 7.9E-26 142.1 -0.2 66 10-75 6-73 (114)
23 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.3E-20 4.4E-25 137.9 2.9 68 8-75 11-86 (109)
24 2ys8_A RAB-related GTP-binding 99.8 9.3E-20 3.2E-24 128.6 4.6 60 10-69 25-87 (90)
25 2l6l_A DNAJ homolog subfamily 99.8 1.2E-19 4E-24 141.0 5.6 69 8-76 6-84 (155)
26 2guz_A Mitochondrial import in 99.8 3.2E-19 1.1E-23 120.1 3.8 60 8-67 10-70 (71)
27 1iur_A KIAA0730 protein; DNAJ 99.7 3E-19 1E-23 124.9 2.8 65 4-68 8-77 (88)
28 3hho_A CO-chaperone protein HS 99.7 2.9E-18 1E-22 135.2 3.5 64 10-73 2-76 (174)
29 1fpo_A HSC20, chaperone protei 99.7 3.8E-18 1.3E-22 134.1 2.9 63 12-74 1-74 (171)
30 1n4c_A Auxilin; four helix bun 99.7 6.6E-18 2.3E-22 132.8 2.5 61 10-70 115-182 (182)
31 3bvo_A CO-chaperone protein HS 99.7 1.4E-17 4.8E-22 134.6 4.3 63 10-72 41-114 (207)
32 3ag7_A Putative uncharacterize 99.7 9.8E-18 3.4E-22 121.3 2.3 56 9-65 38-104 (106)
33 2qwo_B Putative tyrosine-prote 99.7 1.5E-17 5.1E-22 116.7 2.0 52 12-63 33-91 (92)
34 3uo3_A J-type CO-chaperone JAC 99.7 2.2E-17 7.7E-22 130.7 3.1 67 7-73 6-80 (181)
35 3apo_A DNAJ homolog subfamily 99.7 6E-18 2E-22 162.1 -0.5 74 8-81 17-94 (780)
36 1exk_A DNAJ protein; extended 99.6 3.2E-15 1.1E-19 102.7 5.6 77 135-218 1-78 (79)
37 3agx_A DNAJ homolog subfamily 99.4 1.8E-13 6E-18 108.6 5.3 69 118-247 2-70 (181)
38 2guz_B Mitochondrial import in 99.2 5.3E-12 1.8E-16 82.5 3.8 53 11-63 3-58 (65)
39 1nlt_A Protein YDJ1, mitochond 99.2 1.3E-11 4.4E-16 102.6 3.4 58 131-201 42-109 (248)
40 2q2g_A HSP40 protein, heat sho 99.1 5E-11 1.7E-15 94.3 6.1 64 118-244 3-66 (180)
41 2y4t_A DNAJ homolog subfamily 99.0 2.1E-10 7.3E-15 101.1 5.2 62 11-72 381-449 (450)
42 1c3g_A Heat shock protein 40; 98.7 1.1E-08 3.9E-13 79.9 6.0 60 119-244 1-60 (170)
43 2ctt_A DNAJ homolog subfamily 98.4 8E-08 2.7E-12 68.9 2.5 58 131-202 32-95 (104)
44 1exk_A DNAJ protein; extended 98.3 1.4E-07 4.9E-12 64.1 1.5 57 131-201 15-77 (79)
45 3lcz_A YCZA, inhibitor of trap 98.1 5.2E-07 1.8E-11 56.1 1.0 31 186-218 7-37 (53)
46 3i38_A Putative chaperone DNAJ 97.9 8.5E-06 2.9E-10 58.7 3.8 26 116-141 9-34 (109)
47 1xao_A YDJ1, mitochondrial pro 97.6 5.3E-05 1.8E-09 55.6 4.5 26 116-141 4-29 (121)
48 2bx9_A Anti-trap, AT, tryptoph 97.6 1.8E-05 6.2E-10 49.1 1.3 11 147-157 11-21 (53)
49 3lcz_A YCZA, inhibitor of trap 97.6 1.9E-05 6.6E-10 49.0 1.3 25 146-172 10-34 (53)
50 2bx9_A Anti-trap, AT, tryptoph 97.6 3.5E-05 1.2E-09 47.8 2.3 27 189-217 10-36 (53)
51 3pmq_A Decaheme cytochrome C M 97.3 5.3E-05 1.8E-09 70.5 0.8 50 122-171 168-221 (669)
52 3agx_A DNAJ homolog subfamily 97.0 0.00056 1.9E-08 53.6 4.4 27 115-141 89-115 (181)
53 2q2g_A HSP40 protein, heat sho 97.0 0.00057 1.9E-08 53.6 4.4 27 115-141 89-115 (180)
54 1c3g_A Heat shock protein 40; 97.0 0.00045 1.5E-08 53.7 3.5 27 115-141 83-109 (170)
55 3lz8_A Putative chaperone DNAJ 96.8 0.00068 2.3E-08 58.2 3.3 23 222-244 260-282 (329)
56 2pzi_A Probable serine/threoni 92.7 0.065 2.2E-06 50.1 3.4 48 9-60 626-675 (681)
57 1ltl_A DNA replication initiat 74.6 8.4 0.00029 31.7 6.9 18 23-40 8-25 (279)
58 1uzc_A Hypothetical protein FL 57.5 23 0.0008 22.6 5.0 52 22-73 10-65 (71)
59 3pmq_A Decaheme cytochrome C M 57.3 0.71 2.4E-05 43.0 -3.3 47 162-215 192-257 (669)
60 2bx2_L Ribonuclease E, RNAse E 49.8 3.3 0.00011 37.4 -0.1 15 187-201 407-421 (517)
61 2vl6_A SSO MCM N-TER, minichro 45.9 35 0.0012 27.6 5.6 14 28-41 9-22 (268)
62 2b7e_A PRE-mRNA processing pro 45.9 18 0.00062 22.3 2.9 47 27-73 3-55 (59)
63 2cqn_A Formin-binding protein 40.7 24 0.0008 23.0 3.0 51 24-75 6-63 (77)
64 2qkd_A Zinc finger protein ZPR 36.6 15 0.00051 32.0 1.9 36 162-197 13-50 (404)
65 2vf7_A UVRA2, excinuclease ABC 36.5 15 0.0005 35.3 2.0 33 163-199 640-672 (842)
66 2a20_A Regulating synaptic mem 35.6 33 0.0011 21.1 2.8 24 145-168 9-32 (62)
67 2d7l_A WD repeat and HMG-box D 35.2 23 0.00079 23.1 2.3 43 30-72 17-59 (81)
68 2r6f_A Excinuclease ABC subuni 34.9 20 0.00069 34.9 2.7 32 163-198 755-786 (972)
69 1r4v_A Hypothetical protein AQ 34.3 52 0.0018 24.8 4.3 32 29-60 138-169 (171)
70 2jne_A Hypothetical protein YF 34.3 17 0.0006 24.8 1.6 41 146-200 33-73 (101)
71 2jrp_A Putative cytoplasmic pr 34.3 34 0.0012 22.5 3.0 24 146-169 3-26 (81)
72 2kdx_A HYPA, hydrogenase/ureas 33.4 18 0.00063 25.4 1.7 28 145-172 73-101 (119)
73 1cf7_A Protein (transcription 33.2 50 0.0017 21.3 3.7 45 22-73 8-52 (76)
74 1ckt_A High mobility group 1 p 32.6 87 0.003 19.2 4.8 41 31-71 14-55 (71)
75 1qo8_A Flavocytochrome C3 fuma 32.1 4.6 0.00016 36.6 -2.2 66 147-214 14-86 (566)
76 2apo_B Ribosome biogenesis pro 31.5 18 0.00062 22.4 1.2 8 205-212 19-26 (60)
77 3nm9_A HMG-D, high mobility gr 30.6 65 0.0022 20.1 3.9 39 30-72 15-53 (73)
78 1i11_A Transcription factor SO 30.3 59 0.002 20.8 3.7 42 30-72 16-57 (81)
79 1wz6_A HMG-box transcription f 28.9 49 0.0017 21.2 3.2 42 30-72 19-60 (82)
80 1hry_A Human SRY; DNA, DNA-bin 28.5 56 0.0019 20.5 3.3 41 30-71 16-56 (76)
81 4a3n_A Transcription factor SO 28.4 39 0.0013 20.8 2.5 41 30-71 14-54 (71)
82 3a43_A HYPD, hydrogenase nicke 27.0 7.9 0.00027 28.4 -1.2 10 146-155 71-80 (139)
83 2ygr_A Uvrabc system protein A 27.0 31 0.0011 33.7 2.6 32 163-198 773-804 (993)
84 2dod_A Transcription elongatio 26.6 80 0.0027 20.7 3.8 53 23-75 13-68 (82)
85 1vq8_S 50S ribosomal protein L 26.4 36 0.0012 22.6 2.1 21 17-37 26-46 (85)
86 2pk2_A Cyclin-T1, protein TAT; 26.4 70 0.0024 27.1 4.4 29 11-41 218-246 (358)
87 3ga8_A HTH-type transcriptiona 26.0 1E+02 0.0036 19.5 4.3 30 206-240 4-33 (78)
88 1qyp_A RNA polymerase II; tran 25.7 82 0.0028 18.7 3.5 16 163-178 17-32 (57)
89 2crj_A SWI/SNF-related matrix- 25.4 70 0.0024 21.0 3.5 42 30-72 19-60 (92)
90 1ug2_A 2610100B20RIK gene prod 25.3 43 0.0015 22.6 2.3 21 23-43 67-87 (95)
91 1y0p_A Fumarate reductase flav 24.9 5.6 0.00019 36.1 -2.9 65 147-213 13-88 (571)
92 1hme_A High mobility group pro 24.3 88 0.003 19.6 3.7 41 30-71 18-58 (77)
93 1wwi_A Hypothetical protein TT 24.2 95 0.0033 22.8 4.1 31 29-59 114-145 (148)
94 3r8s_T 50S ribosomal protein L 24.1 41 0.0014 22.7 2.0 20 17-36 31-50 (93)
95 2eqz_A High mobility group pro 23.9 72 0.0025 20.6 3.3 42 30-71 27-69 (86)
96 2zjr_Q 50S ribosomal protein L 23.9 41 0.0014 22.8 2.0 21 17-37 26-46 (95)
97 2qkd_A Zinc finger protein ZPR 23.3 1.4E+02 0.0049 25.8 5.8 20 221-240 301-320 (404)
98 2l5u_A Chromodomain-helicase-D 23.0 83 0.0028 19.1 3.2 11 204-214 49-59 (61)
99 1k99_A Upstream binding factor 22.5 1.1E+02 0.0036 20.6 4.0 42 30-72 22-63 (99)
100 3j21_T 50S ribosomal protein L 22.4 47 0.0016 22.1 2.1 21 17-37 27-47 (86)
101 2fiy_A Protein FDHE homolog; F 22.1 1.3E+02 0.0045 25.0 5.2 23 189-213 209-231 (309)
102 3tve_T 50S ribosomal protein L 21.9 49 0.0017 22.3 2.1 21 17-37 25-45 (92)
103 3i8t_A Galectin-4; S-type lect 21.8 59 0.002 24.3 2.8 24 219-242 28-51 (164)
104 3f27_D Transcription factor SO 21.6 66 0.0023 20.5 2.7 41 30-71 18-58 (83)
105 1gng_X Frattide, glycogen synt 21.6 40 0.0014 18.6 1.2 29 7-37 5-34 (39)
106 1qqr_A Streptokinase domain B; 21.5 51 0.0017 23.9 2.2 32 13-44 33-64 (138)
107 3p8b_A DNA-directed RNA polyme 20.9 1.4E+02 0.0046 19.6 4.0 24 190-217 25-48 (81)
108 2lxi_A RNA-binding protein 10; 20.6 73 0.0025 20.6 2.8 21 17-37 6-26 (91)
109 1pft_A TFIIB, PFTFIIBN; N-term 20.5 44 0.0015 19.3 1.4 7 163-169 7-13 (50)
110 2r6f_A Excinuclease ABC subuni 20.3 1.1E+02 0.0037 29.9 4.8 10 207-216 294-303 (972)
111 1wgf_A Upstream binding factor 20.2 54 0.0019 21.5 2.1 42 30-72 32-73 (90)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=5.9e-37 Score=264.88 Aligned_cols=174 Identities=31% Similarity=0.489 Sum_probs=56.5
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCC
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGG 84 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~ 84 (247)
.+..+|||+||||+++|+.+|||+|||+||++||||+++++ ++|++|++||++|+||.+|+.||+|+......++++
T Consensus 24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~ 103 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGR 103 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccc
Confidence 45668999999999999999999999999999999998753 799999999999999999999999854422111110
Q ss_pred -----CC--CCCCcchhhccccCCCCCCCCCCCCCcccccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCC
Q 025877 85 -----AG--AAHNPFDIFESFFGGGTFGAGGSSRGRRRKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSK 157 (247)
Q Consensus 85 -----~~--~~~~~~~~F~~~Fg~~~~~~~~~~~~~~~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~ 157 (247)
.+ +..++.++|++||++++.+ +..+.+.++.|+.+.|.|+|+|++.|+++++.+++.+.| +.
T Consensus 104 ~~~~~~~~f~~~~f~diF~~~Fg~~g~~----~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~----g~--- 172 (329)
T 3lz8_A 104 QRQTHEQSYSQQDFDDIFSSMFGQQAHQ----RRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN----VF--- 172 (329)
T ss_dssp -------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC----SC---
T ss_pred ccccccCCcCCCchhhhhHhhhcCcCCC----CCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec----CC---
Confidence 01 1124668888888742111 112235678999999999999999999999998765422 11
Q ss_pred CCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEE
Q 025877 158 SGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIA 237 (247)
Q Consensus 158 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~ 237 (247)
| .+ ++...++++|+||+||++|++|+
T Consensus 173 -------------G---------------------------~v--------------~~~~~~~l~V~IP~Gv~~G~~Ir 198 (329)
T 3lz8_A 173 -------------G---------------------------MI--------------ESETPKTLNVKIPAGVVDGQRIR 198 (329)
T ss_dssp -------------C----------------------------C--------------CEEEEEEEEEEECTTCCTTCEEE
T ss_pred -------------e---------------------------EE--------------EEecceEEEEeCCCCCCCCCEEE
Confidence 1 11 22345689999999999999999
Q ss_pred EccCCCCCC
Q 025877 238 FEGQADEAV 246 (247)
Q Consensus 238 ~~g~Gd~~~ 246 (247)
|+|+|++.+
T Consensus 199 l~G~G~~g~ 207 (329)
T 3lz8_A 199 LKGQGTPGE 207 (329)
T ss_dssp ESSCSCCC-
T ss_pred EcccccCCC
Confidence 999999864
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.97 E-value=8.8e-32 Score=224.49 Aligned_cols=132 Identities=48% Similarity=0.988 Sum_probs=124.9
Q ss_pred cccCcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCC
Q 025877 115 RKQGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPEC 194 (247)
Q Consensus 115 ~~~~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C 194 (247)
+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|++|+|+|...+...+|+.|+|+|.++..+++++ |+++++.+|+.|
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C 86 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVC 86 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCTTC
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCCCC
Confidence 4578999999999999999999999999999999999999999888788999999999999999998 888889999999
Q ss_pred cccceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCCCCC
Q 025877 195 RGAGEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAVS 247 (247)
Q Consensus 195 ~G~G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~~~~ 247 (247)
+|+|+++..++.|+.|+|.|++...++++|.||+||++|++|+|+|+||+.++
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~ 139 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPD 139 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT
T ss_pred CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCC
Confidence 99999996679999999999999999999999999999999999999998764
No 3
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.90 E-value=1.3e-24 Score=157.65 Aligned_cols=90 Identities=52% Similarity=0.881 Sum_probs=66.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCCC
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAG 86 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~~ 86 (247)
..|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||++|+||.+|..||.+|++++..+..+.+
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~ 81 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG 81 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence 4689999999999999999999999999999999874 278999999999999999999999999988765321111
Q ss_pred C---CCCcchhhccccC
Q 025877 87 A---AHNPFDIFESFFG 100 (247)
Q Consensus 87 ~---~~~~~~~F~~~Fg 100 (247)
+ ..++.++|+++|+
T Consensus 82 ~~~~~~~~~~~f~~~f~ 98 (103)
T 1bq0_A 82 GFGGGADFSDIFGDVFG 98 (103)
T ss_dssp -----------------
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 1 1244566777765
No 4
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=3.2e-23 Score=145.90 Aligned_cols=74 Identities=50% Similarity=0.867 Sum_probs=68.4
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhcC
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG 81 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g 81 (247)
.....|||+||||+++|+.++||+|||+|++++|||+++++ +.|++|++||++|+||.+|..||.++..++..+
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 34578999999999999999999999999999999999874 799999999999999999999999999888754
No 5
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.8e-23 Score=147.37 Aligned_cols=74 Identities=59% Similarity=0.969 Sum_probs=68.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHhhcCCccccchhhhcCchhhhcC
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG 81 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~-~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g 81 (247)
+....|||+||||+++|+.++||+|||+|++++|||+++. .++|++|++||++|+|+.+|..||.++.+++..+
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 5577899999999999999999999999999999999854 5899999999999999999999999999888754
No 6
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.88 E-value=2.4e-23 Score=141.52 Aligned_cols=69 Identities=59% Similarity=0.942 Sum_probs=62.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHhhcCCccccchhhhcCch
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIYDQYGED 76 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~-~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~ 76 (247)
|....|||+||||+++|+.++||+|||+|++++|||++++ .+.|++|++||++|+||.+|..||.+|++
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 6678899999999999999999999999999999999976 48999999999999999999999999863
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=4.1e-23 Score=141.84 Aligned_cols=70 Identities=53% Similarity=1.071 Sum_probs=65.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchhhhc
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE 80 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~ 80 (247)
..|||+||||+++|+.++||+|||+|++++|||+++++ +.|+.|++||++|+||.+|..||.+|.+++..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 36899999999999999999999999999999998653 89999999999999999999999999887653
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=9.4e-23 Score=141.73 Aligned_cols=71 Identities=51% Similarity=0.871 Sum_probs=65.2
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhhhcCchhh
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDAL 78 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~ 78 (247)
.+...|||+||||+++++.++||+|||+|++++|||+++.. +.|++|++||++|+||.+|..||.+|..++
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 45678999999999999999999999999999999999763 689999999999999999999999997653
No 9
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=9.8e-23 Score=140.28 Aligned_cols=70 Identities=56% Similarity=0.979 Sum_probs=64.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCchh
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGEDA 77 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~ 77 (247)
.....|||+||||+++|+.++||+|||+|++++|||+++.+ +.|++|++||++|+|+.+|..||.+|.++
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 35678999999999999999999999999999999999754 89999999999999999999999998754
No 10
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-22 Score=139.97 Aligned_cols=70 Identities=50% Similarity=0.829 Sum_probs=64.3
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchh
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDA 77 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~ 77 (247)
.....|||+||||+++|+.++||+|||+|++++|||++++ .+.|++|++||++|+||.+|..||.+|..+
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 3467899999999999999999999999999999999874 379999999999999999999999998653
No 11
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=143.67 Aligned_cols=73 Identities=51% Similarity=0.835 Sum_probs=66.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhhhcCchhhhc
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE 80 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~ 80 (247)
.....|||+||||+++|+.++||+|||+|+++||||+++.. ++|++|++||++|+|+.+|..||.++..++..
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 44668999999999999999999999999999999998752 68999999999999999999999999877654
No 12
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.9e-22 Score=146.30 Aligned_cols=101 Identities=24% Similarity=0.566 Sum_probs=88.1
Q ss_pred cceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC-cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCccc
Q 025877 119 EDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA-LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGA 197 (247)
Q Consensus 119 ~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (247)
.++.+.|.|+|+|+|+|..+++.+.+.+.|+.|+|+|..++. ..+|+.|+|+|.+...+ ++ ++ +..+|+.|+|+
T Consensus 2 ~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~--~~-~~~~C~~C~G~ 76 (104)
T 2ctt_A 2 SSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GP--FV-MRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TT--EE-EEEECSSSSSS
T ss_pred CceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CC--EE-EEEECCcCCCc
Confidence 577889999999999999999999999999999999998876 46799999999876543 43 32 46899999999
Q ss_pred ceEecCCCCCCCCCCCcEEEEeEEEEEEe
Q 025877 198 GEVISERDKCPQCKANKVTQEKKVLEVHV 226 (247)
Q Consensus 198 G~~~~~~~~C~~C~G~g~~~~~~~~~v~I 226 (247)
|+++. ++|+.|+|.|++..+++|+|.|
T Consensus 77 G~~i~--~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIII--SPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECS--SCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECC--CcCCCCCCeeEEEEEEEEEEEc
Confidence 99986 8999999999999888887765
No 13
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2.9e-22 Score=141.03 Aligned_cols=69 Identities=45% Similarity=0.817 Sum_probs=63.9
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccchhhhcCch
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDIYDQYGED 76 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~yD~~g~~ 76 (247)
.....|||+||||+++|+.++||+|||+|++++|||+++++ +.|++|++||++|+||.+|..||.+|+.
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 34578999999999999999999999999999999998753 8999999999999999999999999864
No 14
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=141.22 Aligned_cols=73 Identities=33% Similarity=0.606 Sum_probs=64.9
Q ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhc--Cchhhh
Q 025877 7 RRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQY--GEDALK 79 (247)
Q Consensus 7 ~~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~--g~~~~~ 79 (247)
..+...|||+||||+++|+.++||+|||+|+++||||+++. .++|++|++||++|+|+.+|..||.. +.+.+.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e~~~ 90 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLR 90 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHHHHH
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccccccc
Confidence 35678899999999999999999999999999999999964 37999999999999999999999984 444444
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4e-22 Score=146.48 Aligned_cols=72 Identities=26% Similarity=0.578 Sum_probs=66.2
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchhhh
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~ 79 (247)
+....|||+||||+++|+.++||+|||+|++++|||++++ .++|++|++||++|+||.+|..||+++..++.
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 4567999999999999999999999999999999999974 38999999999999999999999999876543
No 16
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=3e-22 Score=143.69 Aligned_cols=69 Identities=57% Similarity=0.973 Sum_probs=61.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccchhhhcCchhhhc
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRDIYDQYGEDALKE 80 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~ 80 (247)
.|||+||||+++|+.++||+|||+|++++|||++++. +.|++|++||++|+|+.+|..||.+|.+++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 5899999999999999999999999999999998753 68999999999999999999999999877653
No 17
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.2e-21 Score=143.21 Aligned_cols=72 Identities=47% Similarity=0.828 Sum_probs=66.7
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchhhh
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALK 79 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~ 79 (247)
.....+||+||||+++|+.++||+|||+|++++|||++++ .++|++|++||++|+|+.+|..||.+|..++.
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 4567899999999999999999999999999999999975 37999999999999999999999999988764
No 18
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.82 E-value=3.8e-21 Score=137.02 Aligned_cols=68 Identities=34% Similarity=0.588 Sum_probs=62.3
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHhhcCCccccchhhhcCc
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----------PEKFKELGQAYEVLSDPEKRDIYDQYGE 75 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----------~~~~~~i~~Ay~~l~~~~~r~~yD~~g~ 75 (247)
.....|||+||||+++|+.+|||+|||+|+++||||+++. .+.|++|++||++|+|+.+|..||.+..
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4568899999999999999999999999999999999863 1789999999999999999999998653
No 19
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.82 E-value=1.1e-21 Score=134.85 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=64.4
Q ss_pred CCCCCCCCccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhhcCch
Q 025877 3 GRTPRRSNNTKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGED 76 (247)
Q Consensus 3 ~~~~~~~~~~~~y~~Lg~~~~--a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~ 76 (247)
.+........++|+||||+++ ++.++||+|||+|++++|||++++.++|++|++||++|+|+.+|.. +.||..
T Consensus 2 d~~~~~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~ 76 (79)
T 1faf_A 2 DRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR-MNLGGT 76 (79)
T ss_dssp CCCCCHHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred cccccchhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH-HhcCCc
Confidence 344445566789999999999 9999999999999999999999999999999999999999999887 456654
No 20
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.81 E-value=5.7e-22 Score=154.99 Aligned_cols=73 Identities=32% Similarity=0.519 Sum_probs=64.1
Q ss_pred CCCCCCCCccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhhcCc
Q 025877 3 GRTPRRSNNTKYYEILGVSKSAT--EDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGE 75 (247)
Q Consensus 3 ~~~~~~~~~~~~y~~Lg~~~~a~--~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~~g~ 75 (247)
.+..+.....|||+||||+++|+ .+|||+|||+||+++|||+++++++|++|++||++|+||.+|+.||++|.
T Consensus 2 D~~l~~~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 2 DKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp TTTSCHHHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred cchhcccccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 34455566789999999999998 69999999999999999999989999999999999999999999999985
No 21
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.80 E-value=1.7e-20 Score=152.64 Aligned_cols=86 Identities=38% Similarity=0.748 Sum_probs=71.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchhhhcCCCCCCC
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEGMGGAGA 87 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g~~~~~~ 87 (247)
.|||+||||+++|+.++||+|||+|++++|||++++ .++|++|++||++|+||.+|+.||++|+.++.... ++
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~---~~ 78 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ---GG 78 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTC---SC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccccc---cc
Confidence 589999999999999999999999999999999864 27999999999999999999999999988776432 12
Q ss_pred CCCcchhhccccC
Q 025877 88 AHNPFDIFESFFG 100 (247)
Q Consensus 88 ~~~~~~~F~~~Fg 100 (247)
....+.+|...|+
T Consensus 79 ~~~~~~~~~~~fg 91 (210)
T 3apq_A 79 QYESWSYYRYDFG 91 (210)
T ss_dssp CCCCHHHHHHSSS
T ss_pred ccccccccccccc
Confidence 2334455555554
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.80 E-value=2.3e-21 Score=142.13 Aligned_cols=66 Identities=33% Similarity=0.554 Sum_probs=62.9
Q ss_pred CccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhhcCc
Q 025877 10 NNTKYYEILGVSKSATE--DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQYGE 75 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~--~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~~g~ 75 (247)
...+||+||||+++|+. ++||+|||+|++++|||++++.++|++|++||++|+|+.+|+.||.+|.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 45789999999999999 9999999999999999999999999999999999999999999999875
No 23
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.80 E-value=1.3e-20 Score=137.86 Aligned_cols=68 Identities=35% Similarity=0.618 Sum_probs=63.2
Q ss_pred CCCccccccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHhhcCCccccchhhhcCc
Q 025877 8 RSNNTKYYEILGVSKSA-TEDELKKAYRKAAMKNHPDKGGD-------PEKFKELGQAYEVLSDPEKRDIYDQYGE 75 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a-~~~~ik~ayr~l~~~~hpd~~~~-------~~~~~~i~~Ay~~l~~~~~r~~yD~~g~ 75 (247)
.....|||+||||+++| +.++||+|||+|++++|||++++ .+.|++|++||++|+||.+|..||.++.
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 44678999999999999 99999999999999999999976 2799999999999999999999999875
No 24
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-20 Score=128.56 Aligned_cols=60 Identities=38% Similarity=0.534 Sum_probs=55.4
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHhhcCCccccch
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP---EKFKELGQAYEVLSDPEKRDI 69 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~---~~~~~i~~Ay~~l~~~~~r~~ 69 (247)
...|||+||||+++|+.+|||+|||+|+++||||+++++ ++|++|++||++|+|+.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 458999999999999999999999999999999999553 899999999999999999863
No 25
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=141.02 Aligned_cols=69 Identities=33% Similarity=0.576 Sum_probs=62.6
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----------HHHHHHHHHHhhcCCccccchhhhcCch
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP----------EKFKELGQAYEVLSDPEKRDIYDQYGED 76 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~----------~~~~~i~~Ay~~l~~~~~r~~yD~~g~~ 76 (247)
.....|||+||||+++|+.++||+|||+|++++|||+++.. +.|++|++||++|+||.+|+.||..+..
T Consensus 6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~ 84 (155)
T 2l6l_A 6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE 84 (155)
T ss_dssp CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence 45678999999999999999999999999999999998643 7899999999999999999999986643
No 26
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.2e-19 Score=120.14 Aligned_cols=60 Identities=30% Similarity=0.494 Sum_probs=55.7
Q ss_pred CCCccccccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCcccc
Q 025877 8 RSNNTKYYEILGVSK-SATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKR 67 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~-~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r 67 (247)
.+...++|+||||++ +++.++||+|||+|++++|||++++++.|++|++||++|+++..|
T Consensus 10 ~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 10 KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp SCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 456679999999999 799999999999999999999999999999999999999998766
No 27
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.75 E-value=3e-19 Score=124.95 Aligned_cols=65 Identities=29% Similarity=0.310 Sum_probs=58.7
Q ss_pred CCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHhhcCCccccc
Q 025877 4 RTPRRSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-----EKFKELGQAYEVLSDPEKRD 68 (247)
Q Consensus 4 ~~~~~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-----~~~~~i~~Ay~~l~~~~~r~ 68 (247)
.++......++|+||||+++|+.+|||+|||+|+++||||++++. ++|++|++||++|+|...|.
T Consensus 8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345677788999999999999999999999999999999999862 79999999999999987774
No 28
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.71 E-value=2.9e-18 Score=135.24 Aligned_cols=64 Identities=25% Similarity=0.458 Sum_probs=57.7
Q ss_pred CccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhhc
Q 025877 10 NNTKYYEILGVSKSAT--EDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQY 73 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~--~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~~ 73 (247)
...|||+||||+++++ ..+||+|||+|+++||||++++. +.|+.|++||++|+||.+|..||..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 4679999999999998 99999999999999999998642 5899999999999999999999973
No 29
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.70 E-value=3.8e-18 Score=134.12 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=58.2
Q ss_pred cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhhcC
Q 025877 12 TKYYEILGVSKSA--TEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQYG 74 (247)
Q Consensus 12 ~~~y~~Lg~~~~a--~~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~~g 74 (247)
+|||++|||++++ +..+||+|||+|+++||||++++. +.|+.|++||++|+||.+|+.||...
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 4899999999999 999999999999999999998652 48999999999999999999999854
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.68 E-value=6.6e-18 Score=132.77 Aligned_cols=61 Identities=28% Similarity=0.523 Sum_probs=56.1
Q ss_pred CccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCCccccchh
Q 025877 10 NNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIY 70 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-------~~~~~i~~Ay~~l~~~~~r~~y 70 (247)
...|||+||||+++|+.++||+|||+|++++|||++++. ++|++|++||++|+|+.+|+.|
T Consensus 115 ~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 346999999999999999999999999999999997542 5899999999999999999987
No 31
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=134.58 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=57.5
Q ss_pred CccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHhhcCCccccchhhh
Q 025877 10 NNTKYYEILGVSKS--ATEDELKKAYRKAAMKNHPDKGGDP---------EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 10 ~~~~~y~~Lg~~~~--a~~~~ik~ayr~l~~~~hpd~~~~~---------~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
...|||+||||++. ++..+||+|||+|+++||||++++. ++|+.||+||++|+||.+|+.||.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 46799999999986 7999999999999999999998642 479999999999999999999995
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.67 E-value=9.8e-18 Score=121.29 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=50.3
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------HHHHHHHHHHHhhcCCcc
Q 025877 9 SNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD-----------PEKFKELGQAYEVLSDPE 65 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~-----------~~~~~~i~~Ay~~l~~~~ 65 (247)
+...|||+||+++. |+.++||+|||+|++++|||++++ .++|+.|++||++|+|+.
T Consensus 38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 45679999999996 999999999999999999999752 368999999999999985
No 33
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.66 E-value=1.5e-17 Score=116.66 Aligned_cols=52 Identities=29% Similarity=0.478 Sum_probs=47.8
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCC
Q 025877 12 TKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSD 63 (247)
Q Consensus 12 ~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-------~~~~~i~~Ay~~l~~ 63 (247)
.++|++|||++.|+.+|||+|||+||+++|||++++. ++|++|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998642 589999999999974
No 34
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.66 E-value=2.2e-17 Score=130.69 Aligned_cols=67 Identities=30% Similarity=0.551 Sum_probs=59.9
Q ss_pred CCCCcccccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHhhcCCccccchhhhc
Q 025877 7 RRSNNTKYYEIL------GVSK-SATEDELKKAYRKAAMKNHPDKGG-DPEKFKELGQAYEVLSDPEKRDIYDQY 73 (247)
Q Consensus 7 ~~~~~~~~y~~L------g~~~-~a~~~~ik~ayr~l~~~~hpd~~~-~~~~~~~i~~Ay~~l~~~~~r~~yD~~ 73 (247)
++....|||+|| |+++ +|+..+||+|||+|++++|||+++ ..+.|+.|++||++|+||.+|+.||..
T Consensus 6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 345678999999 4665 899999999999999999999997 458999999999999999999999983
No 35
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.66 E-value=6e-18 Score=162.11 Aligned_cols=74 Identities=41% Similarity=0.785 Sum_probs=40.9
Q ss_pred CCCccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHhhcCCccccchhhhcCchhhhcC
Q 025877 8 RSNNTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGD----PEKFKELGQAYEVLSDPEKRDIYDQYGEDALKEG 81 (247)
Q Consensus 8 ~~~~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~----~~~~~~i~~Ay~~l~~~~~r~~yD~~g~~~~~~g 81 (247)
.....|||+||||+++|+.+|||+|||+|+++||||++++ .++|++|++||++|+||.+|+.||++|++++..+
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 4467899999999999999999999999999999999864 2789999999999999999999999999887654
No 36
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.56 E-value=3.2e-15 Score=102.70 Aligned_cols=77 Identities=31% Similarity=0.778 Sum_probs=64.4
Q ss_pred CceeeecccccccCCCCCCCCCCCCCc-ccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEecCCCCCCCCCCC
Q 025877 135 GTTKKLSLSRNILCPKCKGKGSKSGAL-GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKAN 213 (247)
Q Consensus 135 G~~~~~~~~~~~~C~~C~G~G~~~~~~-~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (247)
|.+++|.+.+.+.|+.|+|+|...+.. .+|+.|+|+|.++..+ |+++ +..+|+.|+|+|+++. ++|+.|+|.
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~ 73 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFA-VQQTCPHCQGRGTLIK--DPCNKCHGH 73 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEE-EEEECTTTTTSSEECS--SBCGGGTTS
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCE-EeeECcCCCCccEECC--CcCCCCCCe
Confidence 567888999999999999999887653 5799999999876633 4443 5689999999999886 899999999
Q ss_pred cEEEE
Q 025877 214 KVTQE 218 (247)
Q Consensus 214 g~~~~ 218 (247)
|++.+
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 99863
No 37
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.40 E-value=1.8e-13 Score=108.56 Aligned_cols=69 Identities=36% Similarity=0.629 Sum_probs=53.3
Q ss_pred CcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCccc
Q 025877 118 GEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGA 197 (247)
Q Consensus 118 ~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (247)
+.|+.+.|.+||+|+|+|+++++.+. .+|+
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~---------------------------------------------~~c~----- 31 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKIS---------------------------------------------HKRL----- 31 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEE---------------------------------------------EEEE-----
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEe---------------------------------------------cccC-----
Confidence 36889999999999999999998643 2233
Q ss_pred ceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCCCCC
Q 025877 198 GEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADEAVS 247 (247)
Q Consensus 198 G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~~~~ 247 (247)
.|+|.|++...++++|.||+||++|++|+|+|+||++++
T Consensus 32 -----------~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~ 70 (181)
T 3agx_A 32 -----------NPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN 70 (181)
T ss_dssp -----------CTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSS
T ss_pred -----------CCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCC
Confidence 334444566789999999999999999999999998763
No 38
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.23 E-value=5.3e-12 Score=82.50 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=49.2
Q ss_pred ccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCC
Q 025877 11 NTKYYEILGVSKS---ATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSD 63 (247)
Q Consensus 11 ~~~~y~~Lg~~~~---a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~ 63 (247)
..+.|.||||++. ++.++|+++||+|....|||+.+++....+|++|++.|..
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4567999999999 9999999999999999999999999999999999999864
No 39
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.15 E-value=1.3e-11 Score=102.58 Aligned_cols=58 Identities=28% Similarity=0.449 Sum_probs=41.6
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC----------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG----------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..|.|...+... ..+|+.|+|+|.+.. ...+|+.|+|+|.++. ...+|+.|+|+|.+
T Consensus 42 ~~C~G~G~~~g~--~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 42 KECEGRGGKKGA--VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----------PKDRCKSCNGKKVE 108 (248)
T ss_dssp TTTTTCSBSTTT--CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----------TTSBCSSSTTSCEE
T ss_pred CCCcCccCCCCC--CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----------cCCCCcccCCCceE
Confidence 446677655433 379999999997521 2357999999997651 13799999999976
Q ss_pred e
Q 025877 201 I 201 (247)
Q Consensus 201 ~ 201 (247)
.
T Consensus 109 ~ 109 (248)
T 1nlt_A 109 N 109 (248)
T ss_dssp E
T ss_pred e
Confidence 3
No 40
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.14 E-value=5e-11 Score=94.32 Aligned_cols=64 Identities=31% Similarity=0.586 Sum_probs=56.2
Q ss_pred CcceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCccc
Q 025877 118 GEDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGA 197 (247)
Q Consensus 118 ~~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~ 197 (247)
+.|+.+.|.+||+|+++|+++++.+.+.+.|+.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------- 35 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------- 35 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence 679999999999999999999999988777631
Q ss_pred ceEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCC
Q 025877 198 GEVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE 244 (247)
Q Consensus 198 G~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~ 244 (247)
+++...++++|.||+||++|++|+|+|+||+
T Consensus 36 ----------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~ 66 (180)
T 2q2g_A 36 ----------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQ 66 (180)
T ss_dssp ----------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCC
T ss_pred ----------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCC
Confidence 2456678999999999999999999999998
No 41
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.01 E-value=2.1e-10 Score=101.09 Aligned_cols=62 Identities=47% Similarity=0.770 Sum_probs=53.4
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHhhcCCccccchhhh
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNHPDKGGDP-------EKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~~~~~-------~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
..++|++||+.+.++.++|+++|+++++++|||+.+.+ +.|+.|++||++|+|+.+|..||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 45899999999999999999999999999999998764 589999999999999999999996
No 42
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.74 E-value=1.1e-08 Score=79.95 Aligned_cols=60 Identities=33% Similarity=0.542 Sum_probs=50.1
Q ss_pred cceeeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccc
Q 025877 119 EDVVHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAG 198 (247)
Q Consensus 119 ~~i~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 198 (247)
+|+.+.|.+||+|+++|+++++.+.+.. +
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~-~-------------------------------------------------- 29 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG-P-------------------------------------------------- 29 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE-T--------------------------------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec-C--------------------------------------------------
Confidence 3788999999999999999999876540 0
Q ss_pred eEecCCCCCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEccCCCC
Q 025877 199 EVISERDKCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEGQADE 244 (247)
Q Consensus 199 ~~~~~~~~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g~Gd~ 244 (247)
.|.+ ..++++|.||+||++|++|+|+|+||+
T Consensus 30 --------------~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~ 60 (170)
T 1c3g_A 30 --------------HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDY 60 (170)
T ss_dssp --------------TTEE-EEEEEEEECCTTCCTTCEEEESSCSSB
T ss_pred --------------CCcE-EeEEEEEEeCCCccCCCEEEEeccccC
Confidence 0123 578899999999999999999999994
No 43
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=8e-08 Score=68.95 Aligned_cols=58 Identities=29% Similarity=0.569 Sum_probs=42.6
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCC------CcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEec
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSG------ALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVIS 202 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~~ 202 (247)
+.+.|..... -....+|+.|+|+|.+.. ...+|+.|+|+|.++. .+|+.|+|.|.+..
T Consensus 32 ~~C~G~G~~~-g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~-------------~~C~~C~G~G~v~~ 95 (104)
T 2ctt_A 32 ERCNGKGNEP-GTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII-------------SPCVVCRGAGQAKQ 95 (104)
T ss_dssp SSSSSSSSCT-TCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS-------------SCCSSSSSCSEECC
T ss_pred CCCcCCccCC-CCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC-------------CcCCCCCCeeEEEE
Confidence 4566665442 233468999999997531 1257999999998653 89999999999864
No 44
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.31 E-value=1.4e-07 Score=64.08 Aligned_cols=57 Identities=33% Similarity=0.687 Sum_probs=42.4
Q ss_pred ecccCceeeecccccccCCCCCCCCCCCCC------cccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceEe
Q 025877 131 DLYNGTTKKLSLSRNILCPKCKGKGSKSGA------LGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEVI 201 (247)
Q Consensus 131 e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~~ 201 (247)
..+.|..... .....+|+.|+|+|.+... ..+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 15 ~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~-------------~~C~~C~G~G~~~ 77 (79)
T 1exk_A 15 DVCHGSGAKP-GTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK-------------DPCNKCHGHGRVE 77 (79)
T ss_dssp GGGTTTSBCS-SSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS-------------SBCGGGTTSSEEE
T ss_pred CCCcccccCC-CccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC-------------CcCCCCCCeEEEe
Confidence 5566766532 2334689999999976421 247999999998543 7999999999875
No 45
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=98.13 E-value=5.2e-07 Score=56.10 Aligned_cols=31 Identities=29% Similarity=0.868 Sum_probs=25.9
Q ss_pred EeeeeCCCCcccceEecCCCCCCCCCCCcEEEE
Q 025877 186 QMQHVCPECRGAGEVISERDKCPQCKANKVTQE 218 (247)
Q Consensus 186 ~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~~~~ 218 (247)
+++.+|+.|+|+|.++. ++|+.|+|.|++..
T Consensus 7 q~~~~C~~C~GsG~~i~--~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 7 DLETTCPNCNGSGREEP--EPCPKCLGKGVILT 37 (53)
T ss_dssp HHEEECTTTTTSCEETT--EECTTTTTSSEEEC
T ss_pred ceeccCcCCcccccCCC--CcCCCCCCcEEEEE
Confidence 34688999999999886 88999999998764
No 46
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=97.89 E-value=8.5e-06 Score=58.73 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=22.5
Q ss_pred ccCcceeeeeeeeeeecccCceeeec
Q 025877 116 KQGEDVVHTLKVSLEDLYNGTTKKLS 141 (247)
Q Consensus 116 ~~~~~i~~~l~~sl~e~~~G~~~~~~ 141 (247)
+.+.|+...+.|+|.+|+.|..+.+.
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~ 34 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVP 34 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEEC
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEE
Confidence 46889999999999999999876654
No 47
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=97.62 E-value=5.3e-05 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.4
Q ss_pred ccCcceeeeeeeeeeecccCceeeec
Q 025877 116 KQGEDVVHTLKVSLEDLYNGTTKKLS 141 (247)
Q Consensus 116 ~~~~~i~~~l~~sl~e~~~G~~~~~~ 141 (247)
+.+.|+...+.|+|.+|+.|.+..+.
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~ 29 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALE 29 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEE
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEe
Confidence 46789999999999999999876654
No 48
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.59 E-value=1.8e-05 Score=49.08 Aligned_cols=11 Identities=45% Similarity=1.123 Sum_probs=5.3
Q ss_pred cCCCCCCCCCC
Q 025877 147 LCPKCKGKGSK 157 (247)
Q Consensus 147 ~C~~C~G~G~~ 157 (247)
+|+.|+|+|..
T Consensus 11 ~C~~C~GsG~~ 21 (53)
T 2bx9_A 11 ACPKCERAGEI 21 (53)
T ss_dssp ECTTTTTSSEE
T ss_pred cCCCCcceecc
Confidence 45555555443
No 49
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.57 E-value=1.9e-05 Score=48.95 Aligned_cols=25 Identities=36% Similarity=0.985 Sum_probs=12.0
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCcE
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQGTGM 172 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~ 172 (247)
.+|+.|+|+|.... .+|+.|+|+|.
T Consensus 10 ~~C~~C~GsG~~i~--~~C~~C~G~G~ 34 (53)
T 3lcz_A 10 TTCPNCNGSGREEP--EPCPKCLGKGV 34 (53)
T ss_dssp EECTTTTTSCEETT--EECTTTTTSSE
T ss_pred ccCcCCcccccCCC--CcCCCCCCcEE
Confidence 35555555555432 23444444443
No 50
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.55 E-value=3.5e-05 Score=47.78 Aligned_cols=27 Identities=37% Similarity=0.913 Sum_probs=14.1
Q ss_pred eeCCCCcccceEecCCCCCCCCCCCcEEE
Q 025877 189 HVCPECRGAGEVISERDKCPQCKANKVTQ 217 (247)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~G~g~~~ 217 (247)
.+|+.|+|+|.++. .+|+.|+|.|.+.
T Consensus 10 ~~C~~C~GsG~~~~--~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIEG--TPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEETT--EECTTTTTSSEEE
T ss_pred ccCCCCcceeccCC--CCCccCCCCccEE
Confidence 45555555555543 4555555555544
No 51
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.26 E-value=5.3e-05 Score=70.51 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=45.4
Q ss_pred eeeeeeeeeecccCceeeecccccccCCCCCCCCCCCCC----cccCCCCCCCc
Q 025877 122 VHTLKVSLEDLYNGTTKKLSLSRNILCPKCKGKGSKSGA----LGKCYGCQGTG 171 (247)
Q Consensus 122 ~~~l~~sl~e~~~G~~~~~~~~~~~~C~~C~G~G~~~~~----~~~C~~C~G~G 171 (247)
.+.+.++|+|+..|..+++.+.+.+.|..|+|+|...+. ..+|+.|+|+.
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~ 221 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSK 221 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCc
Confidence 468899999999999999999999999999999998875 46799999994
No 52
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=97.03 E-value=0.00056 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=22.8
Q ss_pred cccCcceeeeeeeeeeecccCceeeec
Q 025877 115 RKQGEDVVHTLKVSLEDLYNGTTKKLS 141 (247)
Q Consensus 115 ~~~~~~i~~~l~~sl~e~~~G~~~~~~ 141 (247)
.+.+.|+...+.|+|.+|+.|.+..+.
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~ 115 (181)
T 3agx_A 89 KRDGSDVIYPARISLREALCGCTVNVP 115 (181)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEE
T ss_pred eeeCCcEEEEEEcCHHHHhCCCEEEeE
Confidence 356889999999999999999877654
No 53
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=97.03 E-value=0.00057 Score=53.56 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=22.8
Q ss_pred cccCcceeeeeeeeeeecccCceeeec
Q 025877 115 RKQGEDVVHTLKVSLEDLYNGTTKKLS 141 (247)
Q Consensus 115 ~~~~~~i~~~l~~sl~e~~~G~~~~~~ 141 (247)
.+.+.|+...+.|+|.+|+.|....+.
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~ 115 (180)
T 2q2g_A 89 TRDDCHLIMKVTIPLVRALTGFTCPVT 115 (180)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEE
T ss_pred EEcCCEEEEEEEcCHHHHhCCCEEEee
Confidence 356889999999999999999876654
No 54
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=96.99 E-value=0.00045 Score=53.66 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=22.9
Q ss_pred cccCcceeeeeeeeeeecccCceeeec
Q 025877 115 RKQGEDVVHTLKVSLEDLYNGTTKKLS 141 (247)
Q Consensus 115 ~~~~~~i~~~l~~sl~e~~~G~~~~~~ 141 (247)
.+.+.|+...+.|+|.+|+.|....+.
T Consensus 83 ~R~G~DL~~~~~Isl~eAllG~~~~v~ 109 (170)
T 1c3g_A 83 KRDGDDLIYTLPLSFKESLLGFSKTIQ 109 (170)
T ss_dssp EEETTEEEEEECCBHHHHHHCEEEEEE
T ss_pred EEeCCcEeEEEEcCHHHHhCCCeEEee
Confidence 356889999999999999999877654
No 55
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=96.78 E-value=0.00068 Score=58.19 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEecCCCCCCCEEEEccCCCC
Q 025877 222 LEVHVEKGMQHGQKIAFEGQADE 244 (247)
Q Consensus 222 ~~v~Ip~G~~~g~~i~~~g~Gd~ 244 (247)
++|+||+|+++|++++|+|+|=.
T Consensus 260 v~l~ip~gt~~g~~~rl~G~GmP 282 (329)
T 3lz8_A 260 ILLTVPPGSQAGQRLRIKGKGLV 282 (329)
T ss_dssp EEEEECTTCCTTCEEEETTCSCB
T ss_pred EEEEECCCCCCCCEEEEcCCCCC
Confidence 47899999999999999999853
No 56
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.68 E-value=0.065 Score=50.12 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=38.5
Q ss_pred CCccccccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhh
Q 025877 9 SNNTKYYEILGVSKSATE--DELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEV 60 (247)
Q Consensus 9 ~~~~~~y~~Lg~~~~a~~--~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~ 60 (247)
....|||.+||++.++.. .+|++|||+||+..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 345569999999777655 77999999999975555 3789999999876
No 57
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=74.57 E-value=8.4 Score=31.69 Aligned_cols=18 Identities=0% Similarity=0.004 Sum_probs=10.5
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 025877 23 SATEDELKKAYRKAAMKN 40 (247)
Q Consensus 23 ~a~~~~ik~ayr~l~~~~ 40 (247)
.++..+|++.|+...+.+
T Consensus 8 ~~~~~~~~~~f~~Fl~~~ 25 (279)
T 1ltl_A 8 TVDKSKTLTKFEEFFSLQ 25 (279)
T ss_dssp -CCHHHHHHHHHHHTTSH
T ss_pred cCChHHHHHHHHHHhccc
Confidence 356677777766665443
No 58
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=57.45 E-value=23 Score=22.64 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHH--HHHhhcCC-ccccchhhhc
Q 025877 22 KSATEDELKKAYRKAAMKNHPDKGGDP-EKFKELG--QAYEVLSD-PEKRDIYDQY 73 (247)
Q Consensus 22 ~~a~~~~ik~ayr~l~~~~hpd~~~~~-~~~~~i~--~Ay~~l~~-~~~r~~yD~~ 73 (247)
.-++.+|.+++|+.|....+-+-...= .....|. .-|.+|.+ ..++++|+.|
T Consensus 10 ~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey 65 (71)
T 1uzc_A 10 TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 65 (71)
T ss_dssp CCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHH
Confidence 356899999999999999875544331 2223332 35666665 3455555554
No 59
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=57.26 E-value=0.71 Score=43.03 Aligned_cols=47 Identities=17% Similarity=0.404 Sum_probs=29.7
Q ss_pred ccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccce-------------------EecCCCCCCCCCCCcE
Q 025877 162 GKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGE-------------------VISERDKCPQCKANKV 215 (247)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~-------------------~~~~~~~C~~C~G~g~ 215 (247)
..|..|+|+|. -+|-.......|+.|+|+.. .......|..|+....
T Consensus 192 ~~C~tCHGsGA-------~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 192 DTCNSCHSNLA-------FHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp HHHHHHHSSCC-------TTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred CcCCCCCCCCC-------cCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 46999999985 12210012378999999931 1122467999997553
No 60
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=49.77 E-value=3.3 Score=37.35 Aligned_cols=15 Identities=53% Similarity=1.214 Sum_probs=10.9
Q ss_pred eeeeCCCCcccceEe
Q 025877 187 MQHVCPECRGAGEVI 201 (247)
Q Consensus 187 ~~~~C~~C~G~G~~~ 201 (247)
+..+||.|+|+|.+.
T Consensus 407 ~~~~Cp~C~G~G~v~ 421 (517)
T 2bx2_L 407 SHHVCPRCSGTGTVR 421 (517)
T ss_dssp HCCCCSSSSSSSCCC
T ss_pred hcCcCCCcCCceeEC
Confidence 346788888888764
No 61
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=45.94 E-value=35 Score=27.58 Aligned_cols=14 Identities=0% Similarity=0.083 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhC
Q 025877 28 ELKKAYRKAAMKNH 41 (247)
Q Consensus 28 ~ik~ayr~l~~~~h 41 (247)
+++++|+.....+.
T Consensus 9 ~~~~~f~~Fl~~f~ 22 (268)
T 2vl6_A 9 DYRDVFIEFLTTFK 22 (268)
T ss_dssp CHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhh
Confidence 56777777777664
No 62
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.94 E-value=18 Score=22.31 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCC-HHHHHHH---HHHHhhcCC-cc-ccchhhhc
Q 025877 27 DELKKAYRKAAMKNHPDKGGD-PEKFKEL---GQAYEVLSD-PE-KRDIYDQY 73 (247)
Q Consensus 27 ~~ik~ayr~l~~~~hpd~~~~-~~~~~~i---~~Ay~~l~~-~~-~r~~yD~~ 73 (247)
+|..+||.+|.+...-|.+=+ ...+..| ..-|.+|.| |. +++.|+.|
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 578899999999887665433 2455666 257899996 54 66677765
No 63
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=40.67 E-value=24 Score=22.99 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHhhcCCc-cccchhhhcCc
Q 025877 24 ATEDELKKAYRKAAMKNHPDKGGDP------EKFKELGQAYEVLSDP-EKRDIYDQYGE 75 (247)
Q Consensus 24 a~~~~ik~ayr~l~~~~hpd~~~~~------~~~~~i~~Ay~~l~~~-~~r~~yD~~g~ 75 (247)
.-...++.+|+.+.+...|...... ..|... .+|..|.++ .++.+|+.|-.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~-~~fkav~~E~eR~~lFeeYi~ 63 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKE-PAFEDITLESERKRIFKDFMH 63 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTS-HHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccC-HHHHhcCCHHHHHHHHHHHHH
Confidence 3456799999999999888765443 334333 389988774 66777877643
No 64
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=36.56 E-value=15 Score=32.01 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=23.3
Q ss_pred ccCCCCCCCcEEEEEEeecc--ceeeEeeeeCCCCccc
Q 025877 162 GKCYGCQGTGMKITTRQIGL--GMIQQMQHVCPECRGA 197 (247)
Q Consensus 162 ~~C~~C~G~G~~~~~~~~~~--g~~~~~~~~C~~C~G~ 197 (247)
..|+.|+..|........-| +-+-.+...|+.|+=+
T Consensus 13 s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyr 50 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWN 50 (404)
T ss_dssp EECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCE
T ss_pred ccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCc
Confidence 35999988887555433333 3344566789999755
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=36.46 E-value=15 Score=35.32 Aligned_cols=33 Identities=27% Similarity=0.607 Sum_probs=21.8
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccce
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGE 199 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~ 199 (247)
.|+.|.|.|.+....+.. .....+|+.|+|...
T Consensus 640 ~c~~c~g~G~~~~~~~f~----~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 640 RCEHCQGEGWVMVELLFL----PSVYAPCPVCHGTRY 672 (842)
T ss_dssp BCTTTTTCSEEEETTCSS----SCEEEECTTTTTCCB
T ss_pred ccccccCCCccchhhhcC----CccceecccccCccc
Confidence 499999999865433322 234478888888754
No 66
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=35.60 E-value=33 Score=21.14 Aligned_cols=24 Identities=25% Similarity=0.456 Sum_probs=16.3
Q ss_pred cccCCCCCCCCCCCCCcccCCCCC
Q 025877 145 NILCPKCKGKGSKSGALGKCYGCQ 168 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~~C~~C~ 168 (247)
..+|..|+-+-...+.-..|..|.
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk 32 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQ 32 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTC
T ss_pred cchhhhhccceeccCCCccccccC
Confidence 347888888877766655666664
No 67
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.24 E-value=23 Score=23.14 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
-+.+|...+.-||+.....+..+.|.+.|..|++.++....+.
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4567788888899985234888999999999997777654444
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=34.86 E-value=20 Score=34.90 Aligned_cols=32 Identities=22% Similarity=0.646 Sum_probs=21.7
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccc
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAG 198 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 198 (247)
.|+.|.|.|.+....+. ......+|+.|+|..
T Consensus 755 rC~~C~g~G~i~~em~f----l~~v~~~ce~c~G~r 786 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHF----LPDVYVPCEVCHGKR 786 (972)
T ss_dssp BCTTTTTCSEEEECCSS----SCCEEEECTTTTTCC
T ss_pred cccccccccceeeehhc----ccccccccccccccc
Confidence 49999999986553322 223347888888874
No 69
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=34.34 E-value=52 Score=24.81 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhh
Q 025877 29 LKKAYRKAAMKNHPDKGGDPEKFKELGQAYEV 60 (247)
Q Consensus 29 ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~ 60 (247)
+-=|+-+..+..||++|+.++.+.+...-++.
T Consensus 138 L~valARv~K~l~Pernp~~ehwE~a~~v~Dl 169 (171)
T 1r4v_A 138 LLLMHADVIKKATGERKPSREAMEFVAQIVDK 169 (171)
T ss_dssp HHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 44567788889999999988777766655443
No 70
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.33 E-value=17 Score=24.80 Aligned_cols=41 Identities=24% Similarity=0.766 Sum_probs=23.0
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccceE
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAGEV 200 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G~~ 200 (247)
..||.|+-.=...+....|..|+.. . ....-||.|+-.=.+
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~-f-------------~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF-I-------------EMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE-E-------------EEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCCEEECccccch-h-------------hccccCcchhhHHHH
Confidence 5788887653333333347777652 1 123668888765443
No 71
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.32 E-value=34 Score=22.53 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=15.6
Q ss_pred ccCCCCCCCCCCCCCcccCCCCCC
Q 025877 146 ILCPKCKGKGSKSGALGKCYGCQG 169 (247)
Q Consensus 146 ~~C~~C~G~G~~~~~~~~C~~C~G 169 (247)
..||.|+..=...+....|..|+.
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~ 26 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAK 26 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCC
T ss_pred CCCCCCCCccccCCCceECccccc
Confidence 478888876544444445888865
No 72
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=33.43 E-value=18 Score=25.45 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=15.6
Q ss_pred cccCCCCCCCCCCCCCcc-cCCCCCCCcE
Q 025877 145 NILCPKCKGKGSKSGALG-KCYGCQGTGM 172 (247)
Q Consensus 145 ~~~C~~C~G~G~~~~~~~-~C~~C~G~G~ 172 (247)
...|..|.-.-....... .||.|++.-.
T Consensus 73 ~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 346777755444333345 6777766643
No 73
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=33.21 E-value=50 Score=21.32 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhhc
Q 025877 22 KSATEDELKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQY 73 (247)
Q Consensus 22 ~~a~~~~ik~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~~ 73 (247)
.+.|...+-+.|-++... +|+..-+ |++|-+.|.-..+|.+||-.
T Consensus 8 ~~~SL~~lt~kFi~l~~~-~~~~~i~------l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 8 HEKSLGLLTTKFVSLLQE-AKDGVLD------LKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTTCHHHHHHHHHHHHHH-SSTTEEE------HHHHHHHTTTCCTHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHh-CCCCcCc------HHHHHHHhCCccceehhhHH
Confidence 356778888888888765 4554334 78888888765799999964
No 74
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=32.64 E-value=87 Score=19.18 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCC-HHHHHHHHHHHhhcCCccccchhh
Q 025877 31 KAYRKAAMKNHPDKGGD-PEKFKELGQAYEVLSDPEKRDIYD 71 (247)
Q Consensus 31 ~ayr~l~~~~hpd~~~~-~~~~~~i~~Ay~~l~~~~~r~~yD 71 (247)
+..|...+.-||+...+ .+..+.|.+.|..|++..+....+
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 34555567779997632 588899999999999877654444
No 75
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=32.11 E-value=4.6 Score=36.64 Aligned_cols=66 Identities=20% Similarity=0.412 Sum_probs=35.1
Q ss_pred cCCCCCCCCCCCCC-----cccCCCCCCCcEEEEEE--eeccceeeEeeeeCCCCcccceEecCCCCCCCCCCCc
Q 025877 147 LCPKCKGKGSKSGA-----LGKCYGCQGTGMKITTR--QIGLGMIQQMQHVCPECRGAGEVISERDKCPQCKANK 214 (247)
Q Consensus 147 ~C~~C~G~G~~~~~-----~~~C~~C~G~G~~~~~~--~~~~g~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 214 (247)
.|..||+.+..... ...|-.||..-..+... ...+-....-...|..|+-.-.. ....|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~~~~~~~C~~CH~~h~~--~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNSHLGDINCTSCHKGHEE--PKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSSTTCSCCGGGTSCSSSC--CCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchhcCCCCCchhhCcCCcC--cCchhhhhcCCC
Confidence 69999988653211 12599999752211100 00000000013589999965432 246799998743
No 76
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=31.48 E-value=18 Score=22.40 Aligned_cols=8 Identities=38% Similarity=1.315 Sum_probs=3.8
Q ss_pred CCCCCCCC
Q 025877 205 DKCPQCKA 212 (247)
Q Consensus 205 ~~C~~C~G 212 (247)
..|+.|.+
T Consensus 19 ~~CP~CG~ 26 (60)
T 2apo_B 19 EICPKCGE 26 (60)
T ss_dssp SBCSSSCS
T ss_pred ccCcCCCC
Confidence 44555543
No 77
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=30.57 E-value=65 Score=20.06 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4556777778899875 35888899999999987 666653
No 78
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=30.31 E-value=59 Score=20.75 Aligned_cols=42 Identities=24% Similarity=0.457 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 16 AKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 4556667777788864 44788899999999998776554444
No 79
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=28.91 E-value=49 Score=21.20 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4566777778899865 34788899999999997665544443
No 80
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=28.53 E-value=56 Score=20.51 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD 71 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD 71 (247)
.+.+|...+.-||+... .+..+.|.+.|..|++..+....+
T Consensus 16 ~~~~r~~~~~~~p~~~~-~eisk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 16 SRDQRRKMALENPRMRN-SEISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHHCSCCSS-SHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCH-HHHHHHHHhHHHhCCHHHHHHHHH
Confidence 45566677778998753 378889999999998766544333
No 81
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=28.42 E-value=39 Score=20.84 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD 71 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD 71 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4567777788888865 4478888999999999776654444
No 82
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.00 E-value=7.9 Score=28.38 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=5.4
Q ss_pred ccCCCCCCCC
Q 025877 146 ILCPKCKGKG 155 (247)
Q Consensus 146 ~~C~~C~G~G 155 (247)
..|..|.-..
T Consensus 71 ~~C~~CG~~~ 80 (139)
T 3a43_A 71 FKCRNCNYEW 80 (139)
T ss_dssp EEETTTCCEE
T ss_pred EECCCCCCEE
Confidence 4566664443
No 83
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=26.96 E-value=31 Score=33.69 Aligned_cols=32 Identities=25% Similarity=0.560 Sum_probs=21.8
Q ss_pred cCCCCCCCcEEEEEEeeccceeeEeeeeCCCCcccc
Q 025877 163 KCYGCQGTGMKITTRQIGLGMIQQMQHVCPECRGAG 198 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~~~~g~~~~~~~~C~~C~G~G 198 (247)
.|+.|.|.|.+....+.. .....+|+.|.|..
T Consensus 773 rC~~C~g~G~~~~e~~fl----~~v~~~ce~c~G~r 804 (993)
T 2ygr_A 773 RCEACTGDGTIKIEMNFL----PDVYVPCEVCQGAR 804 (993)
T ss_dssp BCTTTTSSSEEEECCTTS----CCEEEECTTTTTCS
T ss_pred cccccccccceeehhhcc----ccceeeehhccccc
Confidence 499999999876543322 23447888888864
No 84
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.58 E-value=80 Score=20.68 Aligned_cols=53 Identities=13% Similarity=0.294 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHH--HHHhhcCCccccchhhhcCc
Q 025877 23 SATEDELKKAYRKAAMKNHPDKGGD-PEKFKELG--QAYEVLSDPEKRDIYDQYGE 75 (247)
Q Consensus 23 ~a~~~~ik~ayr~l~~~~hpd~~~~-~~~~~~i~--~Ay~~l~~~~~r~~yD~~g~ 75 (247)
.++.++-+++|+.|...++-+-... +.....|. .-|.+|....+++.|+.|-.
T Consensus 13 ~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~~~eRK~~F~~y~~ 68 (82)
T 2dod_A 13 IVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVK 68 (82)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCCHHHHHHHHHHHHH
Confidence 4688999999999999987665433 12233333 25666654456667776643
No 85
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=26.44 E-value=36 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
++-|++.|+..|||+|..+|-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999988775
No 86
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=26.36 E-value=70 Score=27.14 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=23.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhC
Q 025877 11 NTKYYEILGVSKSATEDELKKAYRKAAMKNH 41 (247)
Q Consensus 11 ~~~~y~~Lg~~~~a~~~~ik~ayr~l~~~~h 41 (247)
...||++|.. +.+.++|+..++.+...|.
T Consensus 218 ~~~W~~~~~~--~vt~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 218 GKHWWEYVDA--TVTLELLDELTHEFLQILE 246 (358)
T ss_dssp SCCTTTTSCS--SCCHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHhc--cCCHHHHHHHHHHHHHHHH
Confidence 4568888743 5689999999999998873
No 87
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=26.00 E-value=1e+02 Score=19.54 Aligned_cols=30 Identities=27% Similarity=0.619 Sum_probs=15.5
Q ss_pred CCCCCCCCcEEEEeEEEEEEecCCCCCCCEEEEcc
Q 025877 206 KCPQCKANKVTQEKKVLEVHVEKGMQHGQKIAFEG 240 (247)
Q Consensus 206 ~C~~C~G~g~~~~~~~~~v~Ip~G~~~g~~i~~~g 240 (247)
.|+.|.+...+.....+++.+ .|..+.|+.
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~-----~G~~~~I~~ 33 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTF-----RGRKTVLKG 33 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEE-----TTEEEEEEE
T ss_pred ECCCCCCCeeEeEEEEEEEEE-----CCEEEEEcC
Confidence 466665544555555555544 344455543
No 88
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=25.71 E-value=82 Score=18.74 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=8.2
Q ss_pred cCCCCCCCcEEEEEEe
Q 025877 163 KCYGCQGTGMKITTRQ 178 (247)
Q Consensus 163 ~C~~C~G~G~~~~~~~ 178 (247)
+|+.|+..-......|
T Consensus 17 ~Cp~Cg~~~~~~~q~Q 32 (57)
T 1qyp_A 17 TCPKCGNDTAYWWEMQ 32 (57)
T ss_dssp CCTTTCCSEEEEEEEC
T ss_pred ECCCCCCCEEEEEEee
Confidence 4666666444444333
No 89
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=25.38 E-value=70 Score=21.02 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556677777899864 44788899999999998876554443
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=25.34 E-value=43 Score=22.55 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCC
Q 025877 23 SATEDELKKAYRKAAMKNHPD 43 (247)
Q Consensus 23 ~a~~~~ik~ayr~l~~~~hpd 43 (247)
+-++.+|+..|+.|.+.+|-.
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 567788888888888887644
No 91
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=24.88 E-value=5.6 Score=36.06 Aligned_cols=65 Identities=18% Similarity=0.412 Sum_probs=34.4
Q ss_pred cCCCCCCCCCCCCC------cccCCCCCCCcEEEEEE----eeccceeeE-eeeeCCCCcccceEecCCCCCCCCCCC
Q 025877 147 LCPKCKGKGSKSGA------LGKCYGCQGTGMKITTR----QIGLGMIQQ-MQHVCPECRGAGEVISERDKCPQCKAN 213 (247)
Q Consensus 147 ~C~~C~G~G~~~~~------~~~C~~C~G~G~~~~~~----~~~~g~~~~-~~~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (247)
.|..||+....... ...|-.||......... ...+..... -...|..|+..=.. ....|..|+..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~~H~~~~~~C~~CH~~h~~--~~~~C~~CH~~ 88 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEK--SMVYCDSCHSF 88 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTSCSCCSCCCGGGTCCSSSC--BCCGGGGTCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCccccccCCCCCccccCccccC--CCccccccChh
Confidence 79999998643211 13599999753211000 000000000 12579999976322 23779999874
No 92
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=24.31 E-value=88 Score=19.56 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD 71 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD 71 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEK 58 (77)
T ss_dssp HHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3456666677789854 3478889999999999776654433
No 93
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=24.18 E-value=95 Score=22.84 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHh
Q 025877 29 LKKAYRKAAMKNHPD-KGGDPEKFKELGQAYE 59 (247)
Q Consensus 29 ik~ayr~l~~~~hpd-~~~~~~~~~~i~~Ay~ 59 (247)
+-=++-+..+..||+ +|+.++.+.+...-++
T Consensus 114 L~v~lArv~K~l~pe~rnp~~eh~E~a~~v~d 145 (148)
T 1wwi_A 114 LVVAYARVLKELDPALKNPQTEHHERAERVFN 145 (148)
T ss_dssp HHHHHHHHHHHHSTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCHHHHHHHHHHHH
Confidence 344667778889999 8888877766655444
No 94
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=24.09 E-value=41 Score=22.72 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=14.1
Q ss_pred ccCCCCCCCHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKA 36 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l 36 (247)
++-|+++|+..|||+|..+|
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 35677778888888776654
No 95
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.90 E-value=72 Score=20.64 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCC-CHHHHHHHHHHHhhcCCccccchhh
Q 025877 30 KKAYRKAAMKNHPDKGG-DPEKFKELGQAYEVLSDPEKRDIYD 71 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~-~~~~~~~i~~Ay~~l~~~~~r~~yD 71 (247)
-+..|...+.-||+... ..+..+.|.+.|..|++.++....+
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44566666777999764 3588899999999999776654444
No 96
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=23.90 E-value=41 Score=22.82 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=18.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
++-|+++|+..|||+|-.+|-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 678899999999999887764
No 97
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=23.26 E-value=1.4e+02 Score=25.84 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=13.0
Q ss_pred EEEEEecCCCCCCCEEEEcc
Q 025877 221 VLEVHVEKGMQHGQKIAFEG 240 (247)
Q Consensus 221 ~~~v~Ip~G~~~g~~i~~~g 240 (247)
.+.+.||+|+..|..-.+.|
T Consensus 301 EL~lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 301 ELEFELGMAVLGGKFTTLEG 320 (404)
T ss_dssp GGTEEECTTTTCSEEEEHHH
T ss_pred eeeEEecCCCCCceEEeHHH
Confidence 34577888888776555443
No 98
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=22.98 E-value=83 Score=19.06 Aligned_cols=11 Identities=27% Similarity=0.909 Sum_probs=6.3
Q ss_pred CCCCCCCCCCc
Q 025877 204 RDKCPQCKANK 214 (247)
Q Consensus 204 ~~~C~~C~G~g 214 (247)
...|+.|...|
T Consensus 49 ~W~C~~C~~~g 59 (61)
T 2l5u_A 49 KWSCPHCEKEG 59 (61)
T ss_dssp SCCCTTGGGGS
T ss_pred ceECccccccc
Confidence 35577776544
No 99
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=22.53 E-value=1.1e+02 Score=20.55 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 22 ~~~~r~~ik~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~ 63 (99)
T 1k99_A 22 FMEKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKYIQD 63 (99)
T ss_dssp HHHHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556666777788864 45888999999999998877655554
No 100
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.38 E-value=47 Score=22.06 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=17.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
++-|++.|+..|||+|-.+|-
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHHc
Confidence 466888999999999887764
No 101
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.12 E-value=1.3e+02 Score=24.96 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=14.8
Q ss_pred eeCCCCcccceEecCCCCCCCCCCC
Q 025877 189 HVCPECRGAGEVISERDKCPQCKAN 213 (247)
Q Consensus 189 ~~C~~C~G~G~~~~~~~~C~~C~G~ 213 (247)
-.|+.|.-.=.... ..|+.|...
T Consensus 209 l~Cs~C~t~W~~~R--~~C~~Cg~~ 231 (309)
T 2fiy_A 209 LSCSLCACEWHYVR--IKCSHCEES 231 (309)
T ss_dssp EEETTTCCEEECCT--TSCSSSCCC
T ss_pred EEeCCCCCEEeecC--cCCcCCCCC
Confidence 46777766654443 678888764
No 102
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=21.88 E-value=49 Score=22.30 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=17.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
++-|++.|+..|||+|-.+|-
T Consensus 25 ~F~V~~~AnK~qIK~aVe~lf 45 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETAF 45 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467889999999999877764
No 103
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=21.77 E-value=59 Score=24.28 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.1
Q ss_pred eEEEEEEecCCCCCCCEEEEccCC
Q 025877 219 KKVLEVHVEKGMQHGQKIAFEGQA 242 (247)
Q Consensus 219 ~~~~~v~Ip~G~~~g~~i~~~g~G 242 (247)
.....-.||.|+++|+.|+|.|.=
T Consensus 28 ~vPy~~~ipggL~~G~~I~I~G~v 51 (164)
T 3i8t_A 28 TLPYKRPIPGGLSVGMSVYIQGMA 51 (164)
T ss_dssp CSSEEEECTTCCCTTCEEEEEEEE
T ss_pred CCCeeeeCCCCCCCCCEEEEEEEE
Confidence 445778899999999999999853
No 104
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=21.57 E-value=66 Score=20.53 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYD 71 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD 71 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4567777888899875 4478888999999999776654444
No 105
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=21.55 E-value=40 Score=18.57 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=12.5
Q ss_pred CCCCccccccccC-CCCCCCHHHHHHHHHHHH
Q 025877 7 RRSNNTKYYEILG-VSKSATEDELKKAYRKAA 37 (247)
Q Consensus 7 ~~~~~~~~y~~Lg-~~~~a~~~~ik~ayr~l~ 37 (247)
.+..+.|+|++|. |-..-+ =||+|-|+|-
T Consensus 5 ~~t~~ddP~~lLQ~Llr~G~--LIkEAVrRlq 34 (39)
T 1gng_X 5 TRTGDDDPHRLLQQLVLSGN--LIKEAVRRLH 34 (39)
T ss_dssp ------CHHHHHHHHHHHTC--HHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCc--HHHHHHHHHH
Confidence 3556778887773 111111 1777777764
No 106
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=21.54 E-value=51 Score=23.88 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 025877 13 KYYEILGVSKSATEDELKKAYRKAAMKNHPDK 44 (247)
Q Consensus 13 ~~y~~Lg~~~~a~~~~ik~ayr~l~~~~hpd~ 44 (247)
-++..|-|....+.+|++++=..+..++||+=
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 34677888888899999999999999999983
No 107
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=20.89 E-value=1.4e+02 Score=19.61 Aligned_cols=24 Identities=25% Similarity=0.944 Sum_probs=12.9
Q ss_pred eCCCCcccceEecCCCCCCCCCCCcEEE
Q 025877 190 VCPECRGAGEVISERDKCPQCKANKVTQ 217 (247)
Q Consensus 190 ~C~~C~G~G~~~~~~~~C~~C~G~g~~~ 217 (247)
.|..|+ .+ ...+.|+.|...-+..
T Consensus 25 AC~~C~---~v-~~~d~CPnCgs~~~T~ 48 (81)
T 3p8b_A 25 ACRHCH---YI-TSEDRCPVCGSRDLSE 48 (81)
T ss_dssp EETTTC---BE-ESSSSCTTTCCCCEES
T ss_pred HHhhCC---Cc-cCCCCCCCCCCCccCC
Confidence 455554 22 2345688887654433
No 108
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=20.56 E-value=73 Score=20.61 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHH
Q 025877 17 ILGVSKSATEDELKKAYRKAA 37 (247)
Q Consensus 17 ~Lg~~~~a~~~~ik~ayr~l~ 37 (247)
|=||+++++.++|++.|.+.-
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 347999999999999888753
No 109
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.45 E-value=44 Score=19.31 Aligned_cols=7 Identities=29% Similarity=0.990 Sum_probs=3.3
Q ss_pred cCCCCCC
Q 025877 163 KCYGCQG 169 (247)
Q Consensus 163 ~C~~C~G 169 (247)
.|+.|++
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 3555544
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=20.29 E-value=1.1e+02 Score=29.90 Aligned_cols=10 Identities=30% Similarity=0.953 Sum_probs=5.3
Q ss_pred CCCCCCCcEE
Q 025877 207 CPQCKANKVT 216 (247)
Q Consensus 207 C~~C~G~g~~ 216 (247)
|+.|.|-|.+
T Consensus 294 Cp~C~G~G~~ 303 (972)
T 2r6f_A 294 CPDCDGLGAK 303 (972)
T ss_dssp CTTTTSCCEE
T ss_pred CCCCcCccce
Confidence 5555555544
No 111
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.24 E-value=54 Score=21.53 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhcCCccccchhhh
Q 025877 30 KKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKRDIYDQ 72 (247)
Q Consensus 30 k~ayr~l~~~~hpd~~~~~~~~~~i~~Ay~~l~~~~~r~~yD~ 72 (247)
.+.+|...+.-||+.. ..+..+.|.+.|..|++..+....+.
T Consensus 32 ~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS-ESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4556777777899854 44788899999999997766554443
Done!