BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025878
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 18/238 (7%)
Query: 3 LRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSYQQKNFAMAPYGSYWRKVR 62
LRLGL +V++S + E+ + + FA RP + + K +S + ++ ++ Y W+ +
Sbjct: 62 LRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYSLLWKAHK 121
Query: 63 KICTQNLLSNAKINYFQPIRKEELDLLIDYFKEAAR--ARCVVDISAKLSALSANMTCRM 120
K+ LL + + + +D L F E R A V I + S L+ ++ C +
Sbjct: 122 KLTRSALLLGTRSSM-----EPWVDQLTQEFCERMRVQAGAPVTIQKEFSLLTCSIICYL 176
Query: 121 VLGKKCSDYEFDERGFENVVQEGMELIGKPNLG--DYIPQITGLDLQGLTKRLKAVAKAY 178
G K F + VQ+ M+ ++ D +P + GL RLK +
Sbjct: 177 TFGNKEDTL---VHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPNPGLW-RLKQAIENR 232
Query: 179 DAFLEKIIDEHVQSKDENRTEDFVDVMLSFEGSEDTEKKIER-----EHIKAIVLFLG 231
D +EK + H +S + D D ML G + E+ + H+ + LF+G
Sbjct: 233 DHMVEKQLRRHKESMVAGQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIG 290
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 87/238 (36%), Gaps = 13/238 (5%)
Query: 1 MHLRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSYQQKNFAMAPYGSYWRK 60
+ +R+G +V+S Q L F RP L S ++ Q G W
Sbjct: 52 LQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAA 111
Query: 61 VRKICTQNLLSNAKIN---------YFQPIRKEELDLLIDYFKEAARARCVVDISAKLSA 111
R++ QN L+ I Y + +E LI +E D ++
Sbjct: 112 RRRLA-QNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVV 170
Query: 112 LSANMTCRMVLGKKCSDYEFDERGFENVVQEGMELIGKPNLGDYIPQITGLDLQGLTKRL 171
AN+ M G+ + + E +E N D+ P + L L +R
Sbjct: 171 SVANVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPNPAL-QRF 229
Query: 172 KAVAKAYDAFLEKIIDEHVQSKDENRTEDFVDVML--SFEGSEDTEKKIEREHIKAIV 227
KA + + FL+K + EH Q D+N D + S +G + I +E I +V
Sbjct: 230 KAFNQRFLWFLQKTVQEHYQDFDKNSVRDITGALFKHSKKGPRASGNLIPQEKIVNLV 287
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 38/246 (15%)
Query: 3 LRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSY--QQKNFAMAPYGSYWRK 60
L+L +V++ A + L TH A RPP+ ++ + + + + +A YG WR+
Sbjct: 49 LQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWRE 108
Query: 61 VRKICTQNL--LSNAKINYFQPIRKEELDLLIDYFKEAARA-RCVVDISAKLSALSANMT 117
R+ L L K + Q + +E L + + R R + +S + A++T
Sbjct: 109 QRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLT 168
Query: 118 CRMVLGKKCSDYEFDERGF---ENVVQEGM--------ELIGKPNLGDYIPQITGLDLQG 166
C G++ +E+D+ F ++ QEG+ E++ + +IP + G L+
Sbjct: 169 C----GRR---FEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVDRHIPALAGKVLR- 220
Query: 167 LTKRLKAVAKAYDAFLEKIIDEHVQSKDENR-----TEDFVDVMLSFEGSEDTEKKIERE 221
KA+ L++++ EH + D + TE F+ M +G + E E
Sbjct: 221 -------FQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKG--NPESSFNDE 271
Query: 222 HIKAIV 227
+++ +V
Sbjct: 272 NLRIVV 277
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 93/242 (38%), Gaps = 13/242 (5%)
Query: 1 MHLRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSYQQKNFAMAPYGSYWRK 60
+ +R+G +V+S Q L F RP L +S Q G W
Sbjct: 47 LQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAA 106
Query: 61 VRKICTQNLLS--------NAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSAL 112
R++ L S ++ Y + +E ++LI +E + +
Sbjct: 107 RRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVS 166
Query: 113 SANMTCRMVLGKKCSDYEFDERGFENVVQEGMELIGKPNLGDYIPQITGLDLQGLTKRLK 172
N+ C + G++ + N+ E++G N D+IP + L L K
Sbjct: 167 VTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNA-FK 225
Query: 173 AVAKAYDAFLEKIIDEHVQSKDENRTEDFVDVMLSF----EGSEDTEKKIEREHIKAIVL 228
+ + + +F++K++ EH ++ ++ D D ++ + E+ ++ E I IVL
Sbjct: 226 DLNEKFYSFMQKMVKEHYKTFEKGHIRDITDSLIEHCQEKQLDENANVQLSDEKIINIVL 285
Query: 229 FL 230
L
Sbjct: 286 DL 287
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 4/213 (1%)
Query: 3 LRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSYQQKNFAMAPYGSYWRKVR 62
+R+G TT++V Q A++ L F+ RP + S +K A A G++W+ R
Sbjct: 48 VRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHR 107
Query: 63 KICTQNL-LSNAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALSANMTCRMV 121
++ L + I +E+ L D A +DIS + N+ +
Sbjct: 108 RLAMATFALFKDGDQKLEKIICQEISTLCDML--ATHNGQSIDISFPVFVAVTNVISLIC 165
Query: 122 LGKKCSDYEFDERGFENVVQEGMELIGKPNLGDYIPQITGLDLQGLTKRLKAVAKAYDAF 181
+ + + +N + ++ + K +L D +P + + L K LK+ K +
Sbjct: 166 FNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEK-LKSHVKIRNDL 224
Query: 182 LEKIIDEHVQSKDENRTEDFVDVMLSFEGSEDT 214
L KI++ + + + + +D ++ + + D
Sbjct: 225 LNKILENYKEKFRSDSITNMLDTLMQAKMNSDN 257
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 38/246 (15%)
Query: 3 LRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSY--QQKNFAMAPYGSYWRK 60
L+L +V++ A + L TH A RPP+ ++ + + + + +A YG WR+
Sbjct: 49 LQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVFLARYGPAWRE 108
Query: 61 VRKICTQNL--LSNAKINYFQPIRKEELDLLIDYFKEAARA-RCVVDISAKLSALSANMT 117
R+ L L K + Q + +E L + + R R + +S + A++T
Sbjct: 109 QRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIASLT 168
Query: 118 CRMVLGKKCSDYEFDERGF---ENVVQEGM--------ELIGKPNLGDYIPQITGLDLQG 166
C G++ +E+D+ F ++ QEG+ E++ + +IP + G L+
Sbjct: 169 C----GRR---FEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIPALAGKVLR- 220
Query: 167 LTKRLKAVAKAYDAFLEKIIDEHVQSKDENR-----TEDFVDVMLSFEGSEDTEKKIERE 221
KA+ L++++ EH + D + TE F+ M +G + E E
Sbjct: 221 -------FQKAFLTQLDELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKG--NPESSFNDE 271
Query: 222 HIKAIV 227
+++ +V
Sbjct: 272 NLRIVV 277
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 55 GSYWRKVRKICTQNLLS-NAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALS 113
G W+++R+ L + + +EE L++ ++ + C D + L
Sbjct: 98 GKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPC--DPTFILGCAP 155
Query: 114 ANMTCRMVLGKKCSDYEFDERGFENVVQ---EGMELIGKPNLGDY--IPQITGLDLQGLT 168
N+ C ++ K+ +++ ++ F N+++ E +E++ P + Y P +
Sbjct: 156 CNVICSIIFHKR---FDYKDQQFLNLMEKLNENIEILSSPWIQVYNNFPALLDYFPGTHN 212
Query: 169 KRLKAVAKAYDAFLEKIIDEHVQSKDENRTEDFVDVML 206
K LK VA LEK+ EH +S D N +DF+D L
Sbjct: 213 KLLKNVAFMKSYILEKV-KEHQESMDMNNPQDFIDCFL 249
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 55 GSYWRKVRKICTQNLLS-NAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALS 113
G W+++R+ L + + +EE L++ ++ + C D + L
Sbjct: 100 GKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPC--DPTFILGCAP 157
Query: 114 ANMTCRMVLGKKCSDYEFDERGFENVVQ---EGMELIGKP------NLGDYIPQITGLDL 164
N+ C ++ K+ +++ ++ F N+++ E ++++ P N I G
Sbjct: 158 CNVICSIIFHKR---FDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTH- 213
Query: 165 QGLTKRLKAVAKAYDAFLEKIIDEHVQSKDENRTEDFVDVML 206
K LK VA LEK+ EH +S D N +DF+D L
Sbjct: 214 ---NKLLKNVAFMKSYILEKV-KEHQESMDMNNPQDFIDCFL 251
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 55 GSYWRKVRKICTQNLLS-NAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALS 113
G W+++R+ L + + +EE L++ ++ + C D + L
Sbjct: 100 GKRWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPC--DPTFILGCAP 157
Query: 114 ANMTCRMVLGKKCSDYEFDERGFENVVQ---EGMELIGKP--NLGDYIPQITGLDLQGLT 168
N+ C ++ K+ +++ ++ F N+++ E + ++ P + + P I
Sbjct: 158 CNVICSIIFQKR---FDYKDQQFLNLMEKLNENIRIVSTPWIQICNNFPTIIDYFPGTHN 214
Query: 169 KRLKAVAKAYDAFLEKIIDEHVQSKDENRTEDFVDVML 206
K LK +A LEK+ EH +S D N DF+D L
Sbjct: 215 KLLKNLAFMESDILEKV-KEHQESMDINNPRDFIDCFL 251
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 16/209 (7%)
Query: 5 LGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSYQQKNFAMA-PYGSYWRKVRK 63
LG+ T+V+ +A ++ L FA R + + +S K +A W+++R+
Sbjct: 51 LGMKPTVVLHGYEAVKEALVDLGEEFAGRGSVPILEKVS---KGLGIAFSNAKTWKEMRR 107
Query: 64 ICTQNL--LSNAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALSANMTCRMV 121
L K + I +EE L++ ++ + C D + L N+ C ++
Sbjct: 108 FSLMTLRNFGMGKRSIEDRI-QEEARCLVEELRKTNASPC--DPTFILGCAPCNVICSVI 164
Query: 122 LGKKCSDYEFDERGFENVVQ---EGMELIGKPNLGDYIPQITGLD-LQGLTKRLKAVAKA 177
+ +++ + F +++ E +EL+G P L Y LD G+ K L A
Sbjct: 165 FHNR---FDYKDEEFLKLMESLHENVELLGTPWLQVYNNFPALLDYFPGIHKTLLKNADY 221
Query: 178 YDAFLEKIIDEHVQSKDENRTEDFVDVML 206
F+ + + EH + D N DF+D L
Sbjct: 222 IKNFIMEKVKEHQKLLDVNNPRDFIDCFL 250
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 99/231 (42%), Gaps = 19/231 (8%)
Query: 3 LRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSYQQKNFAMAPYGSYWRKVR 62
L LG ++T+V++ ++ L IFA RP L M+ + + YG W R
Sbjct: 53 LDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT-KMGGLLNSRYGRGWVDHR 111
Query: 63 KICTQNLLSNAKINYFQPIRKEELDLLIDYFKEAA---RARCVVDISAKLSALSANMTCR 119
++ + Y Q + ++ +F +A + R D ++ +N+T
Sbjct: 112 RLAVNSF---RYFGYGQKSFESKILEETKFFNDAIETYKGRP-FDFKQLITNAVSNITNL 167
Query: 120 MVLGKKCSDYEFDERGFENVVQ---EGMELIGKPNLGDY--IPQITGLDLQGLTKRLKAV 174
++ G++ + +++ F+++++ E +EL ++ Y P I L + +
Sbjct: 168 IIFGER---FTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNA 224
Query: 175 AKAYDAFLEKIIDEHVQSKDENRTEDFVDVMLSF--EGSEDTEKKIEREHI 223
A YD FL ++I++ ++ + FVD L +G D +E++
Sbjct: 225 AVVYD-FLSRLIEKASVNRKPQLPQHFVDAYLDEMDQGKNDPSSTFSKENL 274
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 99/231 (42%), Gaps = 19/231 (8%)
Query: 3 LRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSYQQKNFAMAPYGSYWRKVR 62
L LG ++T+V++ ++ L IFA RP L M+ + + YG W R
Sbjct: 53 LDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT-KMGGLLNSRYGRGWVDHR 111
Query: 63 KICTQNLLSNAKINYFQPIRKEELDLLIDYFKEAA---RARCVVDISAKLSALSANMTCR 119
++ + Y Q + ++ +F +A + R D ++ +N+T
Sbjct: 112 RLAVNSF---RYFGYGQKSFESKILEETKFFNDAIETYKGRP-FDFKQLITNAVSNITNL 167
Query: 120 MVLGKKCSDYEFDERGFENVVQ---EGMELIGKPNLGDY--IPQITGLDLQGLTKRLKAV 174
++ G++ + +++ F+++++ E +EL ++ Y P I L + +
Sbjct: 168 IIFGER---FTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRNA 224
Query: 175 AKAYDAFLEKIIDEHVQSKDENRTEDFVDVMLSF--EGSEDTEKKIEREHI 223
A YD FL ++I++ ++ + FVD L +G D +E++
Sbjct: 225 AVVYD-FLSRLIEKASVNRKPQLPQHFVDAYLDEMDQGKNDPSSTFSKENL 274
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 13/169 (7%)
Query: 55 GSYWRKVRKICTQNLLS-NAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALS 113
G W+++R+ L + + +EE L++ ++ + C D + L
Sbjct: 99 GKRWKEIRRFSLTTLRNFGMGKRSIEDRVQEEAHCLVEELRKTKASPC--DPTFILGCAP 156
Query: 114 ANMTCRMVLGKKCSDYEFDERGFENVVQ---EGMELIGKP--NLGDYIPQITGLDLQGLT 168
N+ C +V K+ +++ ++ F +++ E ++ P + + P +
Sbjct: 157 CNVICSVVFQKR---FDYKDQNFLTLMKRFNENFRILNSPWIQVCNNFPLLIDCFPGTHN 213
Query: 169 KRLKAVAKAYDAFLEKIIDEHVQSKDENRTEDFVDVML-SFEGSEDTEK 216
K LK VA EK+ EH S D N DF+D L E +D +K
Sbjct: 214 KVLKNVALTRSYIREKV-KEHQASLDVNNPRDFIDCFLIKMEQEKDNQK 261
>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1
pdb|4B8A|A Chain A, Structure Of Yeast Not1 Mif4g Domain Co-Crystallized With
Caf1
pdb|4B8C|B Chain B, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|G Chain G, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|H Chain H, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|I Chain I, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 249
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 211 SEDTEKKIEREHIKAIVLFLGCSTYFINKPI 241
S E+ I+++H+K + +LGC T +NKPI
Sbjct: 117 STKDEQAIDKKHLKNLASWLGCITLALNKPI 147
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 55 GSYWRKVRK--ICTQNLLSNAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSAL 112
G+ W+ +R+ + T K + + I +EE LI+ +++ A ++D + ++
Sbjct: 99 GNRWKVLRRFSVTTMRDFGMGKRSVEERI-QEEAQCLIEELRKSKGA--LMDPTFLFQSI 155
Query: 113 SANMTCRMVLGKKC--SDYEFDERGFENVVQEGMELIGKPNLGDYIPQITGL--DLQGLT 168
+AN+ C +V GK+ D EF + N+ + LI G +G G
Sbjct: 156 TANIICSIVFGKRFHYQDQEFLK--MLNLFYQTFSLISS-VFGQLFELFSGFLKHFPGAH 212
Query: 169 KRLKAVAKAYDAFLEKIIDEHVQSKDENRTEDFVDVMLSFEGSEDTEKKIEREH 222
+++ + +A++ +++H ++ D + D +D L E + E H
Sbjct: 213 RQVYKNLQEINAYIGHSVEKHRETLDPSAPRDLIDTYLLHMEKEKSNAHSEFSH 266
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 21 QFLKTHDLIFASRPPLQASKYMSYQQKNFA----MAPYGSYWRKVRKICTQNLLSNAKIN 76
Q+++ H L + RP S KN A + P GSYW A
Sbjct: 117 QYVQAHTLYNSVRP-FGVSTIFGGVDKNGAHLYMLEPSGSYWG----------YKGAATG 165
Query: 77 YFQPIRKEELDLLIDYFKEAARARCVVDISAKL 109
+ K EL+ L+D+ E AR V +AK+
Sbjct: 166 KGRQSAKAELEKLVDHHPEGLSAREAVKQAAKI 198
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 21 QFLKTHDLIFASRPPLQASKYMSYQQKNFA----MAPYGSYWRKVRKICTQNLLSNAKIN 76
Q+++ H L + RP S KN A + P GSYW A
Sbjct: 118 QYVQAHTLYNSVRP-FGVSTIFGGVDKNGAHLYMLEPSGSYWG----------YKGAATG 166
Query: 77 YFQPIRKEELDLLIDYFKEAARARCVVDISAKL 109
+ K EL+ L+D+ E AR V +AK+
Sbjct: 167 KGRQSAKAELEKLVDHHPEGLSAREAVKQAAKI 199
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 21 QFLKTHDLIFASRPPLQASKYMSYQQKNFA----MAPYGSYWRKVRKICTQNLLSNAKIN 76
Q+++ H L + RP S KN A + P GSYW A
Sbjct: 118 QYVQAHTLYNSVRP-FGVSTIFGGVDKNGAHLYMLEPSGSYWG----------YKGAATG 166
Query: 77 YFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALS 113
+ K EL+ L+D+ E AR V +AK+ L+
Sbjct: 167 KGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 203
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 21 QFLKTHDLIFASRPPLQASKYMSYQQKNFA----MAPYGSYWRKVRKICTQNLLSNAKIN 76
Q+++ H L + RP S KN A + P GSYW A
Sbjct: 114 QYVQAHTLYNSVRP-FGVSTIFGGVDKNGAHLYMLEPSGSYWG----------YKGAATG 162
Query: 77 YFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALS 113
+ K EL+ L+D+ E AR V +AK+ L+
Sbjct: 163 KGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 199
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 21 QFLKTHDLIFASRPPLQASKYMSYQQKNFA----MAPYGSYWRKVRKICTQNLLSNAKIN 76
Q+++ H L + RP S KN A + P GSYW A
Sbjct: 112 QYVQAHTLYNSVRP-FGVSTIFGGVDKNGAHLYMLEPSGSYWG----------YKGAATG 160
Query: 77 YFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALS 113
+ K EL+ L+D+ E AR V +AK+ L+
Sbjct: 161 KGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 197
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 3 LRLGLMTTIVVSSPQAAEQFLKTHDLIFASRPPLQASKYMSYQQKNFAMAPYGSYWRKVR 62
+RLG +V++ +A Q L FA RP + + +S ++ A Y +W KV+
Sbjct: 47 IRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVS-GGRSMAFGHYSEHW-KVQ 104
Query: 63 KICTQNLLSN 72
+ +++ N
Sbjct: 105 RRAAHSMMRN 114
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 33 RP--PLQASKYMSYQQKNFAMAPYGSYWRKVRKICTQNLLSNA 73
RP P+ KY SY P GSYW + CTQ+ S A
Sbjct: 324 RPYFPVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 364
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 33 RP--PLQASKYMSYQQKNFAMAPYGSYWRKVRKICTQNLLSNA 73
RP P+ KY SY P GSYW + CTQ+ S A
Sbjct: 324 RPYFPVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 364
>pdb|2UWN|A Chain A, Crystal Structure Of Human Complement Factor H, Scr
Domains 6-8 (h402 Risk Variant), In Complex With Ligand
Length = 187
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 33 RP--PLQASKYMSYQQKNFAMAPYGSYWRKVRKICTQNLLSNA 73
RP P+ KY SY P GSYW + CTQ+ S A
Sbjct: 23 RPYFPVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 63
>pdb|2V8E|A Chain A, Crystal Structure Of Human Complement Factor H, Scr
Domains 6-8 (H402 Risk Variant), In Complex With Ligand
Length = 187
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 33 RP--PLQASKYMSYQQKNFAMAPYGSYWRKVRKICTQNLLSNA 73
RP P+ KY SY P GSYW + CTQ+ S A
Sbjct: 23 RPYFPVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 63
>pdb|2IC4|A Chain A, Solution Structure Of The His402 Allotype Of The Factor
H Scr6-Scr7-Scr8 Fragment
Length = 187
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 33 RP--PLQASKYMSYQQKNFAMAPYGSYWRKVRKICTQNLLSNA 73
RP P+ KY SY P GSYW + CTQ+ S A
Sbjct: 23 RPYFPVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 63
>pdb|4AYD|A Chain A, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 R106a Mutant
pdb|4AYD|B Chain B, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 R106a Mutant
pdb|4AYD|E Chain E, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 R106a Mutant
pdb|4AYE|A Chain A, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 E283ae304a Mutant
pdb|4AYE|B Chain B, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 E283ae304a Mutant
pdb|4AYE|E Chain E, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 E283ae304a Mutant
pdb|4AYI|A Chain A, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 Wild Type
pdb|4AYI|E Chain E, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 Wild Type
pdb|4AYM|A Chain A, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
pdb|4AYM|B Chain B, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
pdb|4AYM|E Chain E, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
pdb|4AYM|F Chain F, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
Length = 125
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 35 PLQASKYMSYQQKNFAMAPYGSYWRKVRKICTQNLLSNA 73
P+ KY SY P GSYW + CTQ+ S A
Sbjct: 28 PVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 64
>pdb|2W80|A Chain A, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W80|B Chain B, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W80|E Chain E, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W80|G Chain G, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W81|A Chain A, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W81|B Chain B, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W81|E Chain E, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
Length = 123
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 35 PLQASKYMSYQQKNFAMAPYGSYWRKVRKICTQNLLSNA 73
P+ KY SY P GSYW + CTQ+ S A
Sbjct: 26 PVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 62
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 25/107 (23%)
Query: 55 GSYWRKVRKICTQNLLSNAKINYFQPIRKEELDLLIDYFKEAARARCVVDISAKLSALSA 114
G + ++ I T+ A + QP+ KEE+ D+ KE +D+S L +
Sbjct: 12 GPHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEP------MDLSTMEIKLES 65
Query: 115 NM----------------TCRMVLGKKCSDYEFD---ERGFENVVQE 142
N CRM G+ S Y++ E+ F N V+E
Sbjct: 66 NKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKE 112
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 83 KEELDLLIDYFKEAARARCVVDISAKLSALSANMTCRMVLGKKCSDYEFDERGFENVVQE 142
+EE LID + A +D + LS +N+ +V G + +++ ++ F ++++
Sbjct: 128 QEEAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFGDR---FDYKDKEFLSLLRM 182
Query: 143 --GMELIGKPNLGDYIPQITGL--DLQGLTKRLKAVAKAYDAFLEKIIDEHVQSKDENRT 198
G+ + G + + L G ++ + + + F+ K ++ + ++ D N
Sbjct: 183 MLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLDPNSP 242
Query: 199 EDFVDVML----SFEGSEDTEKKIEREHIKAIVLFLGCS 233
DF+D L E + +TE ++ + + LF+G +
Sbjct: 243 RDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLQLFIGGT 281
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 83 KEELDLLIDYFKEAARARCVVDISAKLSALSANMTCRMVLGKKCSDYEFDERGFENVVQE 142
+EE LID + A +D + LS +N+ +V G + +++ ++ F ++++
Sbjct: 128 QEEAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFGDR---FDYKDKEFLSLLRM 182
Query: 143 --GMELIGKPNLGDYIPQITGL--DLQGLTKRLKAVAKAYDAFLEKIIDEHVQSKDENRT 198
G+ + G + + L G ++ + + + F+ K ++ + ++ D N
Sbjct: 183 MLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLDPNSP 242
Query: 199 EDFVDVML----SFEGSEDTEKKIEREHIKAIVLFLGCS 233
DF+D L E + +TE ++ + + LF+G +
Sbjct: 243 RDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGT 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,771,130
Number of Sequences: 62578
Number of extensions: 260938
Number of successful extensions: 704
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 39
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)