BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025879
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WT9|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
pdb|2WT9|B Chain B, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 235
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 71/185 (38%), Gaps = 27/185 (14%)
Query: 20 ESLFLSGDVK-------TGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVF 72
E+L+ G +K + LV+VDV NGF GNLA + D I + + V
Sbjct: 14 ENLYFQGHMKMNKQPQNSALVVVDVQNGFTP--GGNLAVADADTIIPTINQLAGCFENVV 71
Query: 73 CEKKWP-----VFA--------FLDTHYXXXXXXXXXXHCISGTDESNLVPELQWLENET 119
+ W FA F HCI GT ++ P+L +
Sbjct: 72 LTQDWHPDNHISFAANHPGKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQL 131
Query: 120 NVTLRRKDCIDGFLGSVEKDGSNV--FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSA 177
+ ID + +E D + + ++K I V V+GI TD CV + L A
Sbjct: 132 IIRKGFHAHIDSYSAFMEADHTTMTGLTGYLKERGIDTVYVVGIATDFCV---AWTALDA 188
Query: 178 RNRGF 182
+GF
Sbjct: 189 VKQGF 193
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 19/169 (11%)
Query: 29 KTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWP-----VFA-- 81
+ LV+VDV NGF GNLA + D I + + V + W FA
Sbjct: 7 NSALVVVDVQNGFTP--GGNLAVADADTIIPTINQLAGCFENVVLTQDWHPDNHISFAAN 64
Query: 82 ------FLDTHYXXXXXXXXXXHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGS 135
F HCI GT ++ P+L + + ID +
Sbjct: 65 HPGKQPFETIELDYGSQVLWPKHCIQGTHDAEFHPDLNIPTAQLIIRKGFHAHIDSYSAF 124
Query: 136 VEKDGSNV--FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGF 182
+E D + + ++K I V V+GI TD C + + + L A +GF
Sbjct: 125 MEADHTTMTGLTGYLKERGIDTVYVVGIATDFCXVAW--TALDAVKQGF 171
>pdb|3PL1|A Chain A, Determination Of The Crystal Structure Of The
Pyrazinamidase From M.Tuberculosis : A
Structure-Function Analysis For Prediction Resistance To
Pyrazinamide
Length = 186
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Query: 32 LVLVDVVNGFCTVGS----GNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHY 87
L++VDV N FC GS G A ++ IS+ + E+ V K + +
Sbjct: 4 LIIVDVQNDFCEGGSLAVTGGAALAR---AISDYLAEAADYHHVVATKDFHIDPGDHFSG 60
Query: 88 XXXXXXXXXXHCISGTDESNLVPELQWLENETNVTL-RRKDCIDGFLGSVEKDGSNVFVN 146
HC+SGT ++ P L E GF G V+++G+ + N
Sbjct: 61 TPDYSSSWPPHCVSGTPGADFHPSLDTSAIEAVFYKGAYTGAYSGFEG-VDENGTPLL-N 118
Query: 147 WVKSNQIKNVLVLGICTDVCV 167
W++ + V V+GI TD CV
Sbjct: 119 WLRQRGVDEVDVVGIATDHCV 139
>pdb|4FZ2|A Chain A, Crystal Structure Of The Fourth Type Of Archaeal Trna
Splicing Endonuclease From Candidatus Micrarchaeum
Acidiphilum Arman-2
pdb|4FZ2|B Chain B, Crystal Structure Of The Fourth Type Of Archaeal Trna
Splicing Endonuclease From Candidatus Micrarchaeum
Acidiphilum Arman-2
Length = 395
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 7 TIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESV 66
TID+LRN E + L +V+ GL LVDV CT N P + +
Sbjct: 21 TIDILRNGYFGEYRAGKLMLEVEEGLYLVDVRKAACT--DENSKPVSFNDIAGVFIKRKK 78
Query: 67 RLARVFCEKKW 77
+AR F K W
Sbjct: 79 LMARYFTFKDW 89
>pdb|3O90|A Chain A, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|B Chain B, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|C Chain C, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
pdb|3O90|D Chain D, High Resolution Crystal Structures Of Streptococcus
Pneumoniae Nicotinamidase With Trapped Intermediates
Provide Insights Into Catalytic Mechanism And Inhibition
By Aldehydes
Length = 211
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 31 GLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYXXX 90
L+ +D F SG L P IS+ + + RLA E+ +F +D H
Sbjct: 24 ALISIDYTEDFV-ADSGKLTAGAPAQAISDAISKVTRLA---FERGDYIFFTIDAHEEND 79
Query: 91 ----XXXXXXXHCISGTDESNLVPEL----QWLENETNVTLRRKDCIDGFLGSVEKDGSN 142
H + GT NL +L Q +++ V K F G++
Sbjct: 80 CFHPESKLFPPHNLIGTSGRNLYGDLGIFYQEHGSDSRVFWMDKRHYSAF------SGTD 133
Query: 143 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGF 182
+ + ++ ++ V++ G+ TD+CVL + + A N G+
Sbjct: 134 LDIR-LRERRVSTVILTGVLTDICVLH---TAIDAYNLGY 169
>pdb|3HB7|A Chain A, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|C Chain C, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|B Chain B, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|D Chain D, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|E Chain E, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|F Chain F, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|G Chain G, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
pdb|3HB7|H Chain H, The Crystal Structure Of An Isochorismatase-Like Hydrolase
From Alkaliphilus Metalliredigens To 2.3a
Length = 204
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 98 HCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVL 157
H + GT S+ +PEL E+E V RR GF ++K I V+
Sbjct: 75 HAVKGTWGSDFIPELYPQEDEYIVQKRRH---SGF-------AHTDLDLYLKEEGIDTVV 124
Query: 158 VLGICTDVCVLDFVCSTLS 176
+ G+ T+VCV L+
Sbjct: 125 LTGVWTNVCVRSTATDALA 143
>pdb|1YAC|A Chain A, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
pdb|1YAC|B Chain B, The 1.8 Angstrom Crystal Structure Of The Ycac Gene
Product From Escherichia Coli Reveals An Octameric
Hydrolase Of Unknown Specificity
Length = 208
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 144 FVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYD 200
FV VK+ K +++ G+ T+VCV LSA GF DV V + T++
Sbjct: 96 FVKAVKATGKKQLIIAGVVTEVCV---AFPALSAIEEGF-----DVFVVTDASGTFN 144
>pdb|3S2S|A Chain A, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|B Chain B, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|C Chain C, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
pdb|3S2S|D Chain D, The Crystal Structure Of PyrazinamidaseNICOTINAMIDASE FROM
Streptococcus Mutans Ua159
Length = 217
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 98 HCISGTDESNLVPEL----QWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQI 153
H I GT +L L Q EN+ V K F G+++ + ++ ++
Sbjct: 105 HNIKGTSGRDLYGALADFYQKHENDKRVFWMDKRHYSAF------SGTDLDIR-LRERRV 157
Query: 154 KNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNI 209
V++ G+ TD+CVL + + A N G+ + V S + F ++ +N+
Sbjct: 158 DTVVLTGVLTDICVL---HTAIDAYNLGYQIEVVQSAVASLSQENHQFALNHLQNV 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,179,553
Number of Sequences: 62578
Number of extensions: 283059
Number of successful extensions: 489
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 11
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)