BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025879
         (247 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O32091|PNCA_BACSU Uncharacterized isochorismatase family protein PncA OS=Bacillus
           subtilis (strain 168) GN=pncA PE=3 SV=1
          Length = 183

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 29/187 (15%)

Query: 28  VKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHY 87
           +K  L+ +D  N F     G L   +P   I E +   V L + F      V   +D+H 
Sbjct: 1   MKKALICIDYTNDF-VASDGKLTCGEPGRMIEEAI---VNLTKEFITNGDYVVLAVDSHD 56

Query: 88  PDVPEPP----YPPHCISGTDESNL----VPELQWLENETNVTLRRKDCIDGFLGS-VEK 138
                 P    +PPH I GT+  +L    +P  Q  E+E NV    K     F G+ +E 
Sbjct: 57  EGDQYHPETRLFPPHNIKGTEGKDLYGKLLPLYQKHEHEPNVYYMEKTRYSAFAGTDLEL 116

Query: 139 DGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCAT 198
                    ++  QI  + + G+CTD+CVL    + + A N+GF      ++V+ +  A+
Sbjct: 117 K--------LRERQIGELHLAGVCTDICVLH---TAVDAYNKGF-----RIVVHKQAVAS 160

Query: 199 YDFPVHV 205
           ++   H 
Sbjct: 161 FNQEGHA 167


>sp|P21369|PNCA_ECOLI Pyrazinamidase/nicotinamidase OS=Escherichia coli (strain K12)
           GN=pncA PE=3 SV=1
          Length = 213

 Score = 37.0 bits (84), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 34/162 (20%)

Query: 31  GLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPD- 89
            L+LVD+ N FC  G    A + P+G     VD + RL      +   V A  D H  + 
Sbjct: 5   ALLLVDLQNDFCAGG----ALAVPEG--DSTVDVANRLIDWCQSRGEAVIASQDWHPANH 58

Query: 90  -------------------VPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRK---- 126
                              +P+  +P HC+  ++ + L P L   +        +     
Sbjct: 59  GSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLH--QKAIAAVFHKGENPL 116

Query: 127 -DCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCV 167
            D    F  +  +  +++  +W++ ++I  ++V+G+ TD CV
Sbjct: 117 VDSYSAFFDNGRRQKTSL-DDWLRDHEIDELIVMGLATDYCV 157


>sp|Q1RK13|Y220_RICBR Putative ankyrin repeat protein RBE_0220 OS=Rickettsia bellii
           (strain RML369-C) GN=RBE_0220 PE=4 SV=1
          Length = 826

 Score = 35.0 bits (79), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 83  LDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRR 125
           L+T+  + P PP PP  I  T   N   +  W+++E N+TL +
Sbjct: 640 LNTNQSNNPLPPKPPRLIKNTTTQNEENKKTWIKSEANLTLSQ 682


>sp|Q6CLQ8|GEP3_KLULA Genetic interactor of prohibitins 3, mitochondrial OS=Kluyveromyces
           lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
           1267 / NRRL Y-1140 / WM37) GN=GEP3 PE=3 SV=2
          Length = 550

 Score = 32.7 bits (73), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 188 DVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGL 225
           D I ++R  ++ DFP+H   +IK ALPH  ++ H + L
Sbjct: 93  DAISHNRYNSS-DFPIHSFNDIKGALPHAANVYHVVSL 129


>sp|Q6BIS2|YPT35_DEBHA PX domain-containing protein YPT35 OS=Debaryomyces hansenii (strain
           ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
           GN=YPT35 PE=3 SV=2
          Length = 157

 Score = 31.2 bits (69), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 12/125 (9%)

Query: 15  LPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCE 74
           +P++ E    SG   +   + DV+ G   V  G    S     I  +VD+SV  + V  +
Sbjct: 24  VPIQLEDETSSGHFNSTSHITDVLVGDYHVIQGEGGSSYVVWSIRIIVDDSVYSSMVIYK 83

Query: 75  KKWPVFAFLDT---HYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDG 131
           +   +  F +    HYP+   PP PP          L     WLEN       R+  +  
Sbjct: 84  RYSDIQRFREALLEHYPNTEIPPLPPK--DNFSFQRLSMSDYWLEN-------RRKGLQW 134

Query: 132 FLGSV 136
           F+ +V
Sbjct: 135 FMTNV 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.139    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,738,839
Number of Sequences: 539616
Number of extensions: 4308791
Number of successful extensions: 8991
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8985
Number of HSP's gapped (non-prelim): 6
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)