Query 025879
Match_columns 247
No_of_seqs 107 out of 1269
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02743 nicotinamidase 100.0 1E-50 2.2E-55 356.5 24.0 239 3-241 1-239 (239)
2 PRK11609 nicotinamidase/pyrazi 100.0 1.6E-38 3.4E-43 274.0 17.5 184 28-244 1-210 (212)
3 TIGR03614 RutB pyrimidine util 100.0 5E-37 1.1E-41 267.6 16.9 191 15-241 2-215 (226)
4 cd01011 nicotinamidase Nicotin 100.0 1.9E-36 4.2E-41 258.5 16.1 170 30-236 2-196 (196)
5 PTZ00331 alpha/beta hydrolase; 100.0 3.5E-36 7.6E-41 260.2 17.4 180 19-242 3-210 (212)
6 cd01015 CSHase N-carbamoylsarc 100.0 4E-36 8.7E-41 252.7 15.3 171 31-242 1-178 (179)
7 cd01013 isochorismatase Isocho 100.0 9.9E-36 2.1E-40 255.5 17.5 179 19-239 20-203 (203)
8 PRK11440 putative hydrolase; P 100.0 1.1E-35 2.4E-40 251.9 16.5 173 27-242 6-185 (188)
9 PF00857 Isochorismatase: Isoc 100.0 1.2E-35 2.6E-40 246.8 12.8 169 30-240 1-174 (174)
10 PLN02621 nicotinamidase 100.0 5.3E-35 1.2E-39 249.8 16.6 171 23-242 15-191 (197)
11 COG1335 PncA Amidases related 100.0 9.4E-35 2E-39 248.2 15.6 160 27-204 3-176 (205)
12 cd00431 cysteine_hydrolases Cy 100.0 1.2E-32 2.6E-37 226.2 14.7 150 31-204 1-153 (161)
13 cd01014 nicotinamidase_related 100.0 6.3E-32 1.4E-36 222.4 15.3 143 31-205 1-143 (155)
14 cd01012 YcaC_related YcaC rela 100.0 1.8E-31 3.8E-36 220.2 12.8 150 31-241 1-151 (157)
15 COG1535 EntB Isochorismate hyd 100.0 5.5E-28 1.2E-32 200.3 11.5 187 12-242 14-207 (218)
16 KOG4003 Pyrazinamidase/nicotin 99.9 2.8E-25 6.1E-30 184.0 11.0 182 29-236 1-218 (223)
17 KOG4044 Mitochondrial associat 99.7 4.4E-16 9.6E-21 128.0 12.3 156 23-241 10-166 (201)
18 PF02739 5_3_exonuc_N: 5'-3' e 52.7 14 0.00031 30.7 3.0 44 142-193 89-132 (169)
19 TIGR01275 ACC_deam_rel pyridox 46.1 53 0.0011 29.5 5.9 39 149-196 52-91 (311)
20 PRK12390 1-aminocyclopropane-1 42.4 83 0.0018 28.8 6.6 39 148-195 62-101 (337)
21 cd06446 Trp-synth_B Tryptophan 40.8 66 0.0014 29.9 5.8 40 148-196 77-116 (365)
22 TIGR01415 trpB_rel pyridoxal-p 40.3 84 0.0018 30.1 6.5 64 146-238 110-173 (419)
23 cd06449 ACCD Aminocyclopropane 38.5 85 0.0018 28.2 6.0 41 149-198 48-89 (307)
24 TIGR01274 ACC_deam 1-aminocycl 38.2 1E+02 0.0022 28.2 6.5 41 148-197 61-102 (337)
25 PF06833 MdcE: Malonate decarb 37.9 50 0.0011 29.2 4.1 50 26-83 62-112 (234)
26 COG2089 SpsE Sialic acid synth 36.7 2.7E+02 0.0058 26.1 8.8 55 142-204 137-191 (347)
27 PLN02618 tryptophan synthase, 34.4 87 0.0019 29.9 5.5 61 149-238 115-175 (410)
28 PRK03910 D-cysteine desulfhydr 33.2 1.1E+02 0.0024 27.8 5.9 42 148-198 59-101 (331)
29 cd06167 LabA_like LabA_like pr 33.2 89 0.0019 24.5 4.7 43 143-195 90-132 (149)
30 PRK04346 tryptophan synthase s 32.3 1.1E+02 0.0023 29.1 5.8 60 149-237 102-161 (397)
31 PRK14045 1-aminocyclopropane-1 31.9 1.3E+02 0.0028 27.4 6.1 39 148-195 65-104 (329)
32 PRK06381 threonine synthase; V 30.4 1.4E+02 0.003 27.0 6.0 42 145-196 55-96 (319)
33 KOG1371 UDP-glucose 4-epimeras 30.2 65 0.0014 30.1 3.7 46 153-207 2-47 (343)
34 PRK13028 tryptophan synthase s 30.1 1.2E+02 0.0026 28.9 5.7 60 149-237 106-165 (402)
35 PRK12391 tryptophan synthase s 28.2 1.4E+02 0.003 28.7 5.8 64 147-239 120-183 (427)
36 TIGR00263 trpB tryptophan synt 27.3 1.9E+02 0.004 27.2 6.4 38 149-195 94-131 (385)
37 PRK08329 threonine synthase; V 26.8 1.5E+02 0.0033 27.3 5.7 43 143-195 94-136 (347)
38 COG1087 GalE UDP-glucose 4-epi 26.6 78 0.0017 29.4 3.6 41 155-204 2-42 (329)
39 PF10281 Ish1: Putative stress 25.6 58 0.0012 20.0 1.8 14 141-154 6-19 (38)
40 PRK13803 bifunctional phosphor 24.7 1.4E+02 0.0031 29.9 5.4 60 149-237 314-373 (610)
41 TIGR01552 phd_fam prevent-host 24.6 1.7E+02 0.0037 18.7 4.2 24 60-84 6-29 (52)
42 COG2179 Predicted hydrolase of 23.6 4.4E+02 0.0096 22.3 7.2 47 142-200 97-145 (175)
43 cd00640 Trp-synth-beta_II Tryp 23.0 2.3E+02 0.005 24.2 5.8 45 144-197 38-84 (244)
44 cd00008 53EXOc 5'-3' exonuclea 22.6 94 0.002 27.2 3.3 44 142-193 88-131 (240)
45 PRK13802 bifunctional indole-3 22.5 2.2E+02 0.0047 29.3 6.2 61 148-237 374-434 (695)
46 PF00009 GTP_EFTU: Elongation 22.2 2E+02 0.0043 23.5 5.0 36 28-83 94-129 (188)
47 cd01561 CBS_like CBS_like: Thi 22.0 1.9E+02 0.0041 25.6 5.2 44 145-197 41-87 (291)
48 cd06448 L-Ser-dehyd Serine deh 21.4 1.9E+02 0.0041 26.3 5.2 34 153-196 51-84 (316)
49 PRK10098 putative dehydrogenas 20.7 2E+02 0.0043 26.9 5.2 45 27-86 75-119 (350)
50 cd01563 Thr-synth_1 Threonine 20.5 2.4E+02 0.0051 25.4 5.6 40 148-197 65-104 (324)
51 KOG2862 Alanine-glyoxylate ami 20.2 1.9E+02 0.0041 27.1 4.7 88 101-202 100-187 (385)
No 1
>PLN02743 nicotinamidase
Probab=100.00 E-value=1e-50 Score=356.46 Aligned_cols=239 Identities=77% Similarity=1.315 Sum_probs=208.6
Q ss_pred chhhHHhhhhccCCCCccccccCCCCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEE
Q 025879 3 MTSKTIDLLRNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAF 82 (247)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~ 82 (247)
|.|.|++.|+.++|+.+.+.....++++|||||||||+|+.++.|.++.....+....+++++++|++.||++|+||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tALlVIDmQndF~~~~~g~l~~~~~~~~~~~iv~~i~~Ll~~aR~~g~pVI~~ 80 (239)
T PLN02743 1 MVSDTVDLLKKELPVEQESLVLNGDVRTGLVLVDEVNGFCTVGAGNLAPREPDKQISKMVDESARLAREFCERKWPVLAF 80 (239)
T ss_pred ChHHHHHHHHHhCCCccccccccCCCCEEEEEEeCcCCccCCCccccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999777665444589999999999999998643445433222345679999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCccCCCCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeee
Q 025879 83 LDTHYPDVPEPPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGIC 162 (247)
Q Consensus 83 ~~~h~~~~~~~~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~ 162 (247)
++.|.++..+..||.||..||+|++++++|+|.+++....++.|++||+|++|+++.+++.|..+|+++||++|+|+|++
T Consensus 81 ~d~h~~~~~~~~~~~h~v~Gt~g~ei~~~L~p~~~~~~v~v~~K~~~saF~~t~~~~~t~~L~~~Lr~~gI~~liv~Gv~ 160 (239)
T PLN02743 81 LDSHHPDKPEHPYPPHCIVGTGEENLVPALQWLENDPNVTLRRKDCIDGFVGAIEKDGSNVFVDWVNNNKIKVILVVGIC 160 (239)
T ss_pred eCccCCCccccCCCCccCCCCcccccchhhCCCCCCceEEEEecCccccccccccccCccHHHHHHHHCCCCEEEEEEeC
Confidence 99998776667799999999999999999998766533347789999999997655554448999999999999999999
Q ss_pred cCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeecccc
Q 025879 163 TDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF 241 (247)
Q Consensus 163 Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~ 241 (247)
||+||+||++|+++|+++||++|+++|+|++|||++++.+.|.+++++++..|+++++|+++++++..+||+|++.+.|
T Consensus 161 T~~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~at~d~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 239 (239)
T PLN02743 161 TDICVLDFVASALSARNHGILPPLEDVVVYSRGCATYDLPLHVAKTIKGALAHPQELMHHMGLYMAKGRGAKVVSKVSF 239 (239)
T ss_pred cchhccChHHHHHHHHHcCCCCCCceEEEeCCccccCChhhhhhhhhccccCCCHHHHHHHHHHHHHhCCcEeeeeecC
Confidence 9999998889999999999988888999999999999999999999999999999999999999999999999997754
No 2
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=100.00 E-value=1.6e-38 Score=274.02 Aligned_cols=184 Identities=24% Similarity=0.412 Sum_probs=153.2
Q ss_pred CceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC---------------
Q 025879 28 VKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE--------------- 92 (247)
Q Consensus 28 ~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~--------------- 92 (247)
|++|||||||||+|+.. |.++.++ .+.++++|++|++.||+.|+||||++++|++++..
T Consensus 1 m~~ALlvID~Qndf~~~--g~l~~~~----~~~~v~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T PRK11609 1 MKRALLLVDLQNDFCAG--GALAVPE----GDSTIDVANRLIDWCQSRGIPVIASQDWHPANHGSFASNHGAEPGTQGEL 74 (212)
T ss_pred CCcEEEEEeCCccCCCC--CccccCC----HHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCcchhhcCCCCCcccccc
Confidence 68999999999999953 5565443 35789999999999999999999999998765421
Q ss_pred -----CCCCCCccCCCCCCccccccccccCCcceEEEecC------CcccccccccCCCcchHHHHHHhCCCCEEEEEee
Q 025879 93 -----PPYPPHCISGTDESNLVPELQWLENETNVTLRRKD------CIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGI 161 (247)
Q Consensus 93 -----~~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~------~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~ 161 (247)
..||.||++|++|++++++|.+.+++ .++.|+ +||+|+++. ....|+|+.+|+++||++|+|||+
T Consensus 75 ~~~~~~~~~~~~~~gt~g~el~~~l~~~~~d---~vi~K~~~~~~~~~SaF~~~~-~~~~T~L~~~L~~~gi~~lii~G~ 150 (212)
T PRK11609 75 DGLPQTWWPDHCVQNSEGAALHPLLNQKAID---AVFHKGENPLIDSYSAFFDNG-HRQKTALDDWLREHGITELIVMGL 150 (212)
T ss_pred CCcccccCcccccCCCCcCccChhhcccCCC---EEEECCCCCCCcccccccCCC-CCCCccHHHHHHHcCCCEEEEEEe
Confidence 24899999999999999999987654 788996 799998410 001269999999999999999999
Q ss_pred ecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeecccc
Q 025879 162 CTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF 241 (247)
Q Consensus 162 ~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~ 241 (247)
+||+||. +|+++|+++|| +|+|++|||++++...+ .|+.++..|...|+.|++++++
T Consensus 151 ~T~~CV~---~Ta~dA~~~gy-----~v~v~~Da~a~~~~~~~---------------~~~~al~~~~~~~~~v~t~~~~ 207 (212)
T PRK11609 151 ATDYCVK---FTVLDALALGY-----QVNVITDGCRGVNLQPQ---------------DSAHAFMEMSAAGATLYTLADW 207 (212)
T ss_pred ccCHHHH---HHHHHHHHCCC-----EEEEEeeccCCCCCCch---------------hHHHHHHHHHHCCCEEEEHHHH
Confidence 9999999 99999999999 99999999999874322 2456787888899999999987
Q ss_pred ccC
Q 025879 242 GAL 244 (247)
Q Consensus 242 ~~~ 244 (247)
...
T Consensus 208 ~~~ 210 (212)
T PRK11609 208 EET 210 (212)
T ss_pred Hhh
Confidence 543
No 3
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=100.00 E-value=5e-37 Score=267.59 Aligned_cols=191 Identities=21% Similarity=0.246 Sum_probs=158.2
Q ss_pred CCCCccccccCCCCceEEEEEecccccccCCCCCCCCCCC-chhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC-
Q 025879 15 LPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQP-DGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE- 92 (247)
Q Consensus 15 ~~~~~~~~~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~-~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~- 92 (247)
.|.++..+.++ ++++|||||||||+|+.++ |.+...+. ......+++++++|++.||+.|+||||+++.|.+++.+
T Consensus 2 ~~~~~~~~~~~-~~~tALlvID~Qn~f~~~~-~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~~~~~ 79 (226)
T TIGR03614 2 LPARPEPITLD-PEQTALIVVDMQNAYATPG-GYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYFQNGWDNDYVEA 79 (226)
T ss_pred CCCCCcccccC-CCCEEEEEEechhhhhCCC-cccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEEecccChhhhhc
Confidence 34556667776 8899999999999999874 55532211 12346899999999999999999999999887654211
Q ss_pred -----C----------------CCCCCccCCCCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhC
Q 025879 93 -----P----------------PYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSN 151 (247)
Q Consensus 93 -----~----------------~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~ 151 (247)
. .++.+|..|++|++++++|.+.+++ .+++|++||+|++ |+|+.+|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~l~p~~~d---~vi~K~~~saF~~-------T~L~~~Lr~~ 149 (226)
T TIGR03614 80 GGPGSPNWHKSNALKTMRKRPELQGKLLAKGTWDYELVDELQPQPGD---IVLPKPRYSGFFN-------TPLDSMLRAR 149 (226)
T ss_pred cCCCcccccccccccccccCcccccceeecCCCCcccCcccCCCCCC---EEEeCCCcCCCCC-------CCHHHHHHHC
Confidence 0 0124678899999999999998764 7899999999999 5999999999
Q ss_pred CCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhC
Q 025879 152 QIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGR 231 (247)
Q Consensus 152 ~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (247)
||++|||+|+.||+||. +|+++|+++|| +|+|++|||++.+.+ .+|++.+..+...
T Consensus 150 gI~~lvi~Gv~T~~CV~---sTar~A~~~Gy-----~v~vv~Da~a~~~~~----------------~~h~~~l~~l~~~ 205 (226)
T TIGR03614 150 GIRNLVFTGIATNVCVE---STLRDGFHLEY-----FGVVLEDATHQAGPD----------------FMQKAALYNIETF 205 (226)
T ss_pred CCCEEEEeccCccHhHH---HHHHHHHHCCC-----EEEEechhccCCCch----------------HHHHHHHHHHHhH
Confidence 99999999999999999 99999999999 999999999987643 2467888888889
Q ss_pred CcEEeecccc
Q 025879 232 GAKVVSGVSF 241 (247)
Q Consensus 232 ~a~v~~~~~~ 241 (247)
++.|+++.++
T Consensus 206 ~~~v~~~~~~ 215 (226)
T TIGR03614 206 FGWVSDVADF 215 (226)
T ss_pred heeeecHHHH
Confidence 9999998876
No 4
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=100.00 E-value=1.9e-36 Score=258.51 Aligned_cols=170 Identities=28% Similarity=0.423 Sum_probs=144.1
Q ss_pred eEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCC------------------
Q 025879 30 TGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVP------------------ 91 (247)
Q Consensus 30 tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~------------------ 91 (247)
+|||||||||||+.+ |.++.++. .+++++|++|++.+| |.||||++++|++++.
T Consensus 2 tALlvID~Qndf~~~--g~l~~~~~----~~~v~~i~~l~~~ar--g~~Vi~~~~~h~~~~~~~~~~~~~~~~~~~~~~~ 73 (196)
T cd01011 2 DALLVVDVQNDFCPG--GALAVPGG----DAIVPLINALLSLFQ--YDLVVATQDWHPANHASFASNHPGQMPFITLPPG 73 (196)
T ss_pred ceEEEEcCCCCCCCC--CcccCCCH----HHHHHHHHHHHHhcC--CCEEEEecCCCCCCCcChhhcCCCCCCccccCCC
Confidence 699999999999985 56765443 478999999999999 9999999999876432
Q ss_pred -CCCCCCCccCCCCCCccccccccccCCcceEEEecC------CcccccccccCCCcchHHHHHHhCCCCEEEEEeeecC
Q 025879 92 -EPPYPPHCISGTDESNLVPELQWLENETNVTLRRKD------CIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTD 164 (247)
Q Consensus 92 -~~~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~------~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td 164 (247)
...||.||+.||+|++++++|.+.+.+ .++.|+ +||+|++. .+.++|+|.++|+++||++|+|||++||
T Consensus 74 ~~~~~~~~~~~gs~g~~i~~~l~~~~~d---~vi~K~~~~~~~~~saF~~~-~~~~~t~L~~~L~~~~i~~lii~G~~t~ 149 (196)
T cd01011 74 PQVLWPDHCVQGTPGAELHPGLPVPDID---LIVRKGTNPDIDSYSAFFDN-DRRSSTGLAEYLRERGIDRVDVVGLATD 149 (196)
T ss_pred CcCcCCCccCCCCCCCccCcccccCCCC---EEEECCCCCCCceeeeeecC-CccCchhHHHHHHHCCCCEEEEEEeccc
Confidence 125999999999999999999987654 788994 68999872 1122359999999999999999999999
Q ss_pred cccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEe
Q 025879 165 VCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVV 236 (247)
Q Consensus 165 ~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~ 236 (247)
+||. +|+++|.++|| +|+|++|||++++.+.| +.++..|...|++|+
T Consensus 150 ~CV~---~T~~~a~~~g~-----~v~v~~Da~~~~~~~~~-----------------~~al~~~~~~G~~i~ 196 (196)
T cd01011 150 YCVK---ATALDALKAGF-----EVRVLEDACRAVDPETI-----------------ERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHH---HHHHHHHHCCC-----EEEEeccccCCCCHHHH-----------------HHHHHHHHHccCEEC
Confidence 9999 99999999999 99999999999988655 566778888888774
No 5
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=100.00 E-value=3.5e-36 Score=260.16 Aligned_cols=180 Identities=24% Similarity=0.361 Sum_probs=152.9
Q ss_pred ccccccCCCCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC------
Q 025879 19 QESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE------ 92 (247)
Q Consensus 19 ~~~~~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~------ 92 (247)
.+++.++ ++++|||||||||+|+.+ |+++.++. .+++++++++++.+ .+.+|||++++|+..+..
T Consensus 3 ~~~~~~~-~~~~ALlVIDmQndF~~~--g~l~~~~~----~~iv~~i~~l~~~~--~~~~Vi~~~d~h~~~~~~~~~~~~ 73 (212)
T PTZ00331 3 TSCITVS-STNDALIIVDVQNDFCKG--GSLAVPDA----EEVIPVINQVRQSH--HFDLVVATQDWHPPNHISFASNHG 73 (212)
T ss_pred ccccccC-CCCCEEEEEcCCCCCCCC--CccCCCCH----HHHHHHHHHHHHhc--CCCEEEEecCcCCCCCcChhhcCC
Confidence 4456665 679999999999999986 56776543 47899999999843 345789999998765431
Q ss_pred -----------CCCCCCccCCCCCCccccccccccCCcceEEEecC------Ccccc-----cccccCCCcchHHHHHHh
Q 025879 93 -----------PPYPPHCISGTDESNLVPELQWLENETNVTLRRKD------CIDGF-----LGSVEKDGSNVFVNWVKS 150 (247)
Q Consensus 93 -----------~~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~------~~saF-----~~t~~~~~~t~L~~~L~~ 150 (247)
..||.||+.||+|++++++|.+.+++ .++.|+ +||+| ++ |+|.++|++
T Consensus 74 ~~~~~~~~~~~~~~~~h~~~gs~g~~i~~~L~~~~~~---~vi~K~~~~~~~~~saF~~~~~~~-------t~L~~~L~~ 143 (212)
T PTZ00331 74 KPKILPDGTTQGLWPPHCVQGTKGAQLHKDLVVERID---IIIRKGTNRDVDSYSAFDNDKGSK-------TGLAQILKA 143 (212)
T ss_pred CCCcccCCCccCCCcccccCCCCcccCChhhccCCCc---EEEECCCCCCCceecCccCCCCCC-------chHHHHHHH
Confidence 26999999999999999999987654 788898 69999 77 599999999
Q ss_pred CCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhh
Q 025879 151 NQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKG 230 (247)
Q Consensus 151 ~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~ 230 (247)
+|+++|+|||++||+||. +|+++|.++|| +|+|++|||++++.+.| +.++..++.
T Consensus 144 ~gi~~lvi~G~~t~~CV~---~Ta~~a~~~g~-----~v~vv~Da~~~~~~~~~-----------------~~al~~~~~ 198 (212)
T PTZ00331 144 HGVRRVFICGLAFDFCVL---FTALDAVKLGF-----KVVVLEDATRAVDPDAI-----------------SKQRAELLE 198 (212)
T ss_pred CCCCEEEEEEeccCHHHH---HHHHHHHHCCC-----EEEEeCcCccCCCHHHH-----------------HHHHHHHHH
Confidence 999999999999999999 99999999999 99999999999987655 567888999
Q ss_pred CCcEEeeccccc
Q 025879 231 RGAKVVSGVSFG 242 (247)
Q Consensus 231 ~~a~v~~~~~~~ 242 (247)
.|++|++++++.
T Consensus 199 ~g~~v~~~~~~~ 210 (212)
T PTZ00331 199 AGVILLTSSDLV 210 (212)
T ss_pred CCCEEEeHHHhh
Confidence 999999988764
No 6
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=100.00 E-value=4e-36 Score=252.68 Aligned_cols=171 Identities=21% Similarity=0.305 Sum_probs=147.0
Q ss_pred EEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC-CCC----C--CCccCCC
Q 025879 31 GLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE-PPY----P--PHCISGT 103 (247)
Q Consensus 31 ALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~-~~w----p--~~~~~gt 103 (247)
|||||||||+|+.++ .+..+ ....+++|+++|++.||+.|.||||++++|.++.++ ..| | .++..|+
T Consensus 1 ALlvID~Q~~f~~~~--~~~~~----~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs 74 (179)
T cd01015 1 ALLVIDLVEGYTQPG--SYLAP----GIAAALENVQRLLAAARAAGVPVIHTTVVYDPDGADGGLWARKVPAMSDLVEGS 74 (179)
T ss_pred CEEEEEeecceeCCC--Ccccc----chHHHHHHHHHHHHHHHHcCCCEEEEEeeECCccCccchhhhcccccccccCCC
Confidence 699999999999863 34432 235789999999999999999999999887655432 223 3 3467899
Q ss_pred CCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCC
Q 025879 104 DESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFL 183 (247)
Q Consensus 104 ~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~ 183 (247)
+|+++.++|.+.+++ .+++|++||+|++ |+|+.+|+++||++|+|+|++||+||+ +|+++|+++||
T Consensus 75 ~~~~~~~~l~~~~~~---~v~~K~~~saF~~-------t~L~~~L~~~gi~~vvi~G~~t~~CV~---~Ta~~A~~~Gy- 140 (179)
T cd01015 75 PLAAICDELAPQEDE---MVLVKKYASAFFG-------TSLAATLTARGVDTLIVAGCSTSGCIR---ATAVDAMQHGF- 140 (179)
T ss_pred CccccccccCCCCCC---EEEecCccCCccC-------CcHHHHHHHcCCCEEEEeeecccHhHH---HHHHHHHHCCC-
Confidence 999999999998754 7899999999999 599999999999999999999999999 99999999999
Q ss_pred CCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeeccccc
Q 025879 184 APLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFG 242 (247)
Q Consensus 184 ~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~~ 242 (247)
+|+|++|||++++++. |..++..+..+++.|+++.++.
T Consensus 141 ----~v~vv~Da~a~~~~~~-----------------h~~al~~l~~~~~~v~~t~~~~ 178 (179)
T cd01015 141 ----RPIVVRECVGDRAPAP-----------------HEANLFDIDNKYGDVVSTDDAL 178 (179)
T ss_pred ----eEEEeeccccCCCHHH-----------------HHHHHHHHHhhceeeccHHHHh
Confidence 9999999999987764 4667888999999999998874
No 7
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=100.00 E-value=9.9e-36 Score=255.55 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=150.4
Q ss_pred ccccccCCCCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCC-----CC
Q 025879 19 QESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVP-----EP 93 (247)
Q Consensus 19 ~~~~~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~-----~~ 93 (247)
..++.++ ++++|||||||||+|+.+. + ... +..+.+++++++|++.||+.|+||||+++.|..... ..
T Consensus 20 ~~~~~l~-~~~tALlvID~Q~~f~~~~-~-~~~----~~~~~~~~~i~~li~~ar~~g~pVi~t~~~~~~~~~~~~~~~~ 92 (203)
T cd01013 20 KVDWQID-PKRAVLLVHDMQRYFLDFY-D-ESA----EPVPQLIANIARLRDWCRQAGIPVVYTAQPGNQTPEQRALLND 92 (203)
T ss_pred CCCCCCC-CCcEEEEEEeChhhhhCcc-c-ccc----chHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCChhHHHHHHH
Confidence 3456776 7899999999999999742 1 111 134679999999999999999999999976542211 12
Q ss_pred CCCCCccCCCCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhh
Q 025879 94 PYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCS 173 (247)
Q Consensus 94 ~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~T 173 (247)
.|+.++..|++|++++++|.+.+++ .+++|.+||+|++ |+|+.+|+++|+++|+|+|+.||+||+ +|
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~d---~vi~K~~~saF~~-------T~L~~~Lr~~gi~~lii~Gv~T~~CV~---~T 159 (203)
T cd01013 93 FWGPGLTASPEETKIVTELAPQPDD---TVLTKWRYSAFKR-------SPLLERLKESGRDQLIITGVYAHIGCL---ST 159 (203)
T ss_pred HhhccCCCCCCccccccccCCCCCC---EEEeCCCcCCcCC-------CCHHHHHHHcCCCEEEEEEeccChhHH---HH
Confidence 5777777789999999999988764 8899999999999 599999999999999999999999999 99
Q ss_pred HHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeecc
Q 025879 174 TLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGV 239 (247)
Q Consensus 174 a~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~ 239 (247)
+++|+++|| +|+|++|||++++.+. |+.+|..+..+++.|++++
T Consensus 160 a~~A~~~Gy-----~v~vv~Da~as~~~~~-----------------h~~al~~l~~~~a~v~~t~ 203 (203)
T cd01013 160 AVDAFMRDI-----QPFVVADAIADFSLEE-----------------HRMALKYAATRCAMVVSTD 203 (203)
T ss_pred HHHHHHCCC-----eEEEeccccCCCCHHH-----------------HHHHHHHHHhheeEeeecC
Confidence 999999999 9999999999988764 4778888999999998864
No 8
>PRK11440 putative hydrolase; Provisional
Probab=100.00 E-value=1.1e-35 Score=251.86 Aligned_cols=173 Identities=21% Similarity=0.243 Sum_probs=146.2
Q ss_pred CCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC-------CCCCCCc
Q 025879 27 DVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE-------PPYPPHC 99 (247)
Q Consensus 27 ~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~-------~~wp~~~ 99 (247)
++++|||||||||+|+... |... ....+++++++|++.||+.|+||||+++.|.++.++ ...+++|
T Consensus 6 ~~~~ALlvID~Qn~f~~~~-~~~~------~~~~~i~~i~~l~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (188)
T PRK11440 6 AKTTALVVIDLQEGILPFA-GGPH------TADEVVARAARLAAKFRASGSPVVLVRVGWSADYAEALKQPVDAPSPAKV 78 (188)
T ss_pred CCCEEEEEEecccccccCC-CCcc------hHHHHHHHHHHHHHHHHHcCCcEEEEecccCCchhhhccCcccccccccc
Confidence 6789999999999999742 2111 235799999999999999999999999877665432 1235677
Q ss_pred cCCCCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHH
Q 025879 100 ISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARN 179 (247)
Q Consensus 100 ~~gt~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~ 179 (247)
..+++ ++++++|.|.+++ .++.|+++|+|++ |+|+.+|+++||++|+|||+.||+||. +|+++|.+
T Consensus 79 ~~~~~-~~~~~~l~~~~~d---~vi~K~~~saF~~-------T~L~~~L~~~gi~~lii~Gv~T~~CV~---~Ta~~A~~ 144 (188)
T PRK11440 79 LPENW-WQHPAALGKTDSD---IEVTKRQWGAFYG-------TDLELQLRRRGIDTIVLCGISTNIGVE---STARNAWE 144 (188)
T ss_pred cCCcc-cccCcccCCCCCC---EEEecCCcCCCCC-------CCHHHHHHHCCCCEEEEeeechhHHHH---HHHHHHHH
Confidence 77776 7899999998764 7899999999999 599999999999999999999999999 99999999
Q ss_pred CCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeeccccc
Q 025879 180 RGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFG 242 (247)
Q Consensus 180 ~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~~ 242 (247)
+|| +|+|++|||++++.+.| +.++..+..+++.|++++++.
T Consensus 145 ~gy-----~v~vv~Da~as~~~~~h-----------------~~al~~~~~~~a~v~~~~~~~ 185 (188)
T PRK11440 145 LGF-----NLVIAEDACSAASAEQH-----------------QNSMNHIFPRIARVRSVEEIL 185 (188)
T ss_pred CCC-----EEEEechhhcCCCHHHH-----------------HHHHHHHHhheeEEeeHHHHH
Confidence 999 99999999999977654 666777777889999988763
No 9
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=100.00 E-value=1.2e-35 Score=246.77 Aligned_cols=169 Identities=32% Similarity=0.551 Sum_probs=145.1
Q ss_pred eEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC-----CCCCCCccCCCC
Q 025879 30 TGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE-----PPYPPHCISGTD 104 (247)
Q Consensus 30 tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~-----~~wp~~~~~gt~ 104 (247)
||||||||||+|+. +.+..+ ..+.+++++++|+++||+.|+||||+++.|...... ..|+.+|..|++
T Consensus 1 TaLlvID~Q~~f~~---~~~~~~----~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 73 (174)
T PF00857_consen 1 TALLVIDMQNDFIN---GSLAPP----NAEAIIPNINRLLDAARAAGVPVIHTRDIHDSPHWSGPFEPKPWPPHCIPGSP 73 (174)
T ss_dssp EEEEEES-BHHHHT---STTTST----THHHHHHHHHHHHHHHHHTTEEEEEEEESBSTTTTTTSGGHSCHTSCSBTTSG
T ss_pred CEEEEEeChhhhhc---CCcccc----CHHHHHHHHHHHHHHHHHhCCCeEEEEeeecccccccccccccccccccCCCC
Confidence 79999999999992 234433 346899999999999999999999999988722211 346789999999
Q ss_pred CCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCC
Q 025879 105 ESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLA 184 (247)
Q Consensus 105 g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~ 184 (247)
|+++++++.+.+++ .++.|+++|+|++ ++|.++|+++|+++|+|+|++|++||. +|+++|+++||
T Consensus 74 ~~~l~~~l~~~~~~---~vi~K~~~saf~~-------t~L~~~L~~~gi~~vil~G~~t~~CV~---~Ta~~a~~~g~-- 138 (174)
T PF00857_consen 74 GAELVPELAPQPGD---PVIEKNRYSAFFG-------TDLDEILRKRGIDTVILCGVATDVCVL---ATARDAFDRGY-- 138 (174)
T ss_dssp GGSBHGGGHCHTTS---EEEEESSSSTTTT-------SSHHHHHHHTTESEEEEEEESTTTHHH---HHHHHHHHTT---
T ss_pred ccceeeEeeccccc---ceEEeeccccccc-------ccccccccccccceEEEcccccCcEEe---hhHHHHHHCCC--
Confidence 99999999998754 8899999999998 599999999999999999999999999 99999999999
Q ss_pred CCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeeccc
Q 025879 185 PLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVS 240 (247)
Q Consensus 185 ~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~ 240 (247)
+|+|++|||++++.+. |+.++..+..+|+.|+++++
T Consensus 139 ---~v~v~~Da~~~~~~~~-----------------h~~~l~~l~~~~~~v~t~~~ 174 (174)
T PF00857_consen 139 ---RVIVVEDACASYSPEA-----------------HEAALEELRKRGAEVITSAE 174 (174)
T ss_dssp ---EEEEEEEEEEBSSHHH-----------------HHHHHHHHHHHTSEEE-HHH
T ss_pred ---EEEEEChhhcCCCHHH-----------------HHHHHHHHHhCCCEEEeCCC
Confidence 9999999999999764 47788899999999999764
No 10
>PLN02621 nicotinamidase
Probab=100.00 E-value=5.3e-35 Score=249.84 Aligned_cols=171 Identities=19% Similarity=0.231 Sum_probs=147.3
Q ss_pred ccCCCCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCC----CCCCCCC
Q 025879 23 FLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVP----EPPYPPH 98 (247)
Q Consensus 23 ~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~----~~~wp~~ 98 (247)
.++ ++++|||+|||||+|+.. ..++++++++|++.||..|+||||++++|..... ...|+.+
T Consensus 15 ~~~-~~~~aLlvID~Q~~f~~~-------------~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~~~~~~~~~~~~~~~~ 80 (197)
T PLN02621 15 DPD-PKQAALLVIDMQNYFSSM-------------AEPILPALLTTIDLCRRASIPVFFTRHSHKSPSDYGMLGEWWDGD 80 (197)
T ss_pred CCC-CCCEEEEEEeChhhhhhh-------------HHHHHHHHHHHHHHHHHCCCcEEEEeccCCCcchhhhhhhhcCCc
Confidence 443 679999999999999741 1368899999999999999999999998854321 1246665
Q ss_pred -ccCCCCCCcccccccc-ccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHH
Q 025879 99 -CISGTDESNLVPELQW-LENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLS 176 (247)
Q Consensus 99 -~~~gt~g~~l~~~l~~-~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~ 176 (247)
|..|++|++++++|++ .++ +.++.|++||+|++ |+|+.+|+++|+++|+|+|++||+||+ +|+++
T Consensus 81 ~~~~gs~g~~i~~~L~~~~~~---~~vi~K~~~saf~~-------t~L~~~L~~~gi~~lvi~Gv~T~~CV~---~Ta~~ 147 (197)
T PLN02621 81 LILDGTTEAELMPEIGRVTGP---DEVVEKSTYSAFYN-------TRLEERLRKIGVKEVIVTGVMTNLCCE---TTARE 147 (197)
T ss_pred cccCCCCccccchhccCCCCC---CEEEECCCcCCCCC-------CcHHHHHHHCCCCEEEEEecccchhHH---HHHHH
Confidence 8899999999999998 443 37889999999998 599999999999999999999999999 99999
Q ss_pred HHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeeccccc
Q 025879 177 ARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFG 242 (247)
Q Consensus 177 A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~~ 242 (247)
|+++|| +|+|++|||++++.+. |..++..+...|+.|+++.++.
T Consensus 148 a~~~gy-----~v~v~~Da~as~~~~~-----------------h~~al~~~~~~~~~v~~~~~~~ 191 (197)
T PLN02621 148 AFVRGF-----RVFFSTDATATANEEL-----------------HEATLKNLAYGFAYLVDCDRLE 191 (197)
T ss_pred HHHCCC-----EEEEeccccCCCCHHH-----------------HHHHHHHHHhhceEeecHHHHH
Confidence 999999 9999999999998764 4667888888999999988874
No 11
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.4e-35 Score=248.23 Aligned_cols=160 Identities=28% Similarity=0.389 Sum_probs=135.9
Q ss_pred CCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCC----------CCC
Q 025879 27 DVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEP----------PYP 96 (247)
Q Consensus 27 ~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~~----------~wp 96 (247)
++++|||+|||||+|+.++ |.+...+.+ . ..+++++++|++.||..|.|||+++++|+++.... .||
T Consensus 3 ~~~~ALivID~Q~~f~~~~-~~~~~~~~~-~-~~i~~~i~~l~~~ar~~~~~vi~t~~~~~~~~~~~~~~~~~~~~~~~~ 79 (205)
T COG1335 3 PAKTALIVVDMQNDFMPGG-GSLAALGVD-G-RKIIPNIAALVDAARAAGQPVIATQDWHPADISSLAGSPESSKLFPWP 79 (205)
T ss_pred ccceEEEEEeeeccccCCC-CcccccCCc-h-hhhHHHHHHHHHHHHHcCCeEEEecccCCCcccccccccccccCCCCc
Confidence 6899999999999999974 444333322 1 46899999999999999999999999998864321 188
Q ss_pred CCccCCCCCCccccccccccCC---cceEEEecC-CcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchh
Q 025879 97 PHCISGTDESNLVPELQWLENE---TNVTLRRKD-CIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVC 172 (247)
Q Consensus 97 ~~~~~gt~g~~l~~~l~~~~~~---~~~~vv~K~-~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~ 172 (247)
.||..|++|++++++|.+.... ....++.|. +||+|++ |+|+.+|+++||++|++||++||+||+ +
T Consensus 80 ~h~~~g~~g~~~~~~l~~~~~~~~~~~~~~~~k~~~~saF~~-------T~L~~~Lr~~~i~~l~v~G~~td~CV~---~ 149 (205)
T COG1335 80 RHDVKGTPGAELLGELPPAVDDAQLVPEDVIFKKHGYSAFAG-------TDLDDILRNLGIDTVVVCGIATDICVL---A 149 (205)
T ss_pred chhcCCCcchhhccccccccccccccceeeeccccccCcccC-------CCHHHHHHHCCCCEEEEeeeehhHHHH---H
Confidence 9999999999999999987641 012566777 9999999 599999999999999999999999999 9
Q ss_pred hHHHHHHCCCCCCCCcEEEecCCCccCCcchh
Q 025879 173 STLSARNRGFLAPLEDVIVYSRGCATYDFPVH 204 (247)
Q Consensus 173 Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h 204 (247)
|+++|.++|| +|++++|||++++.+.+
T Consensus 150 T~~~A~~~gy-----~v~v~~da~~~~~~~~~ 176 (205)
T COG1335 150 TARDAFDLGY-----QVTLVEDATAGSSLDRS 176 (205)
T ss_pred HHHHHHHCCC-----eEEEehhhcccCCCChH
Confidence 9999999999 99999999999996544
No 12
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=100.00 E-value=1.2e-32 Score=226.21 Aligned_cols=150 Identities=35% Similarity=0.545 Sum_probs=132.7
Q ss_pred EEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCC---CCCCCCccCCCCCCc
Q 025879 31 GLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPE---PPYPPHCISGTDESN 107 (247)
Q Consensus 31 ALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~---~~wp~~~~~gt~g~~ 107 (247)
|||+|||||+|+.++. ..+ . ....+++++++++++||++|+||||+++.+.++.++ ..|+.||..|++|++
T Consensus 1 aLliID~Q~~f~~~~~-~~~-~----~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 74 (161)
T cd00431 1 ALLVVDMQNDFVPGGG-LLL-P----GADELVPNINRLLAAARAAGIPVIFTRDWHPPDDPEFAELLWPPHCVKGTEGAE 74 (161)
T ss_pred CEEEEECcccCcCCCC-CcC-c----cHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCCCcccccccCcccccCCCchhh
Confidence 6999999999998632 211 1 345889999999999999999999999887766543 258899999999999
Q ss_pred cccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCC
Q 025879 108 LVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLE 187 (247)
Q Consensus 108 l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~ 187 (247)
+.++|.+.+++ .++.|+.+|+|++ |+|.++|+++|+++|+|+|+.|++||+ +|+++|.++||
T Consensus 75 ~~~~l~~~~~~---~~i~K~~~saf~~-------t~l~~~L~~~~i~~vil~G~~t~~CV~---~T~~~a~~~G~----- 136 (161)
T cd00431 75 LVPELAPLPDD---LVIEKTRYSAFYG-------TDLDELLRERGIDTLVVCGIATDICVL---ATARDALDLGY----- 136 (161)
T ss_pred cchhhCCCCCC---EEEecCCcCCccC-------CCHHHHHHHCCCCEEEEEecCcChhHH---HHHHHHHHCCC-----
Confidence 99999877654 7899999999999 599999999999999999999999999 99999999999
Q ss_pred cEEEecCCCccCCcchh
Q 025879 188 DVIVYSRGCATYDFPVH 204 (247)
Q Consensus 188 ~ViVv~Da~as~~~~~h 204 (247)
+|+|++|||++++.+.|
T Consensus 137 ~v~vi~Da~~s~~~~~~ 153 (161)
T cd00431 137 RVIVVEDACATRDEEDH 153 (161)
T ss_pred EEEEehhhcccCChHHH
Confidence 99999999999999776
No 13
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=99.98 E-value=6.3e-32 Score=222.40 Aligned_cols=143 Identities=28% Similarity=0.468 Sum_probs=125.0
Q ss_pred EEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCCCCCCccCCCCCCcccc
Q 025879 31 GLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVP 110 (247)
Q Consensus 31 ALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~~~wp~~~~~gt~g~~l~~ 110 (247)
|||+|||||+|+.+. .... ....++++++++++.||+.|+||||+++.|..+.+ +..|++|+++++
T Consensus 1 aLlviD~Q~~f~~~~---~~~~----~~~~~v~~i~~li~~~r~~~~~Vi~~~~~~~~~~~-------~~~gt~g~~l~~ 66 (155)
T cd01014 1 ALLVIDVQNGYFDGG---LPPL----NNEAALENIAALIAAARAAGIPVIHVRHIDDEGGS-------FAPGSEGWEIHP 66 (155)
T ss_pred CEEEEeCchhhhCCC---CCcC----CHHHHHHHHHHHHHHHHHCCCeEEEEEeccCCCCC-------CCCCCCccccch
Confidence 699999999999742 2222 23588999999999999999999999987654332 456999999999
Q ss_pred ccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEE
Q 025879 111 ELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVI 190 (247)
Q Consensus 111 ~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~Vi 190 (247)
+|.+.+.+ .+++|+.+|+|++ |+|.++|+++|+++|+|+|++||+||. +|+++|+++|| +|+
T Consensus 67 ~l~~~~~d---~v~~K~~~saf~~-------t~l~~~L~~~gi~~viv~G~~td~CV~---~Ta~~a~~~g~-----~v~ 128 (155)
T cd01014 67 ELAPLEGE---TVIEKTVPNAFYG-------TDLEEWLREAGIDHLVICGAMTEMCVD---TTVRSAFDLGY-----DVT 128 (155)
T ss_pred hhcCCCCC---EEEeCCCCCCcCC-------CCHHHHHHHCCCCEEEEEeeccchhHH---HHHHHHHHCCC-----cEE
Confidence 99886543 7889999999998 599999999999999999999999999 99999999999 999
Q ss_pred EecCCCccCCcchhh
Q 025879 191 VYSRGCATYDFPVHV 205 (247)
Q Consensus 191 Vv~Da~as~~~~~h~ 205 (247)
|++|||++++.+.|.
T Consensus 129 vi~Da~~s~~~~~~~ 143 (155)
T cd01014 129 VVADACATFDLPDHG 143 (155)
T ss_pred EecccccCCCcccCC
Confidence 999999999998873
No 14
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=99.97 E-value=1.8e-31 Score=220.16 Aligned_cols=150 Identities=25% Similarity=0.385 Sum_probs=129.1
Q ss_pred EEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCCCCCCccCCCCCCcccc
Q 025879 31 GLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISGTDESNLVP 110 (247)
Q Consensus 31 ALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~~~wp~~~~~gt~g~~l~~ 110 (247)
|||||||||+|+.. .. ....+++++++|++.||+.|+||||+++. + + +..++++
T Consensus 1 aLlvID~Q~~f~~~----~~------~~~~~~~~i~~l~~~ar~~g~pVi~~~~~--~-------------~-~~g~~~~ 54 (157)
T cd01012 1 ALLLVDVQEKLAPA----IK------SFDELINNTVKLAKAAKLLDVPVILTEQY--P-------------K-GLGPTVP 54 (157)
T ss_pred CEEEEeCcHHHHHh----hc------CHHHHHHHHHHHHHHHHhcCCCEEEEeeC--C-------------C-CCCCchH
Confidence 69999999999863 11 13578999999999999999999999742 1 1 1226899
Q ss_pred cccc-ccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcE
Q 025879 111 ELQW-LENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDV 189 (247)
Q Consensus 111 ~l~~-~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~V 189 (247)
+|.+ .+++ .++.|++||+|++ |+|+.+|+++|+++|+|+|++||+||. +|+++|.++|| +|
T Consensus 55 ~l~~~~~~~---~vi~K~~~saf~~-------t~L~~~L~~~gi~~lii~G~~T~~CV~---~Ta~~a~~~g~-----~v 116 (157)
T cd01012 55 ELREVFPDA---PVIEKTSFSCWED-------EAFRKALKATGRKQVVLAGLETHVCVL---QTALDLLEEGY-----EV 116 (157)
T ss_pred HHHhhCCCC---CceecccccCcCC-------HHHHHHHHhcCCCEEEEEEeeccHHHH---HHHHHHHHCCC-----EE
Confidence 9988 5543 7889999999999 599999999999999999999999999 99999999999 99
Q ss_pred EEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeecccc
Q 025879 190 IVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF 241 (247)
Q Consensus 190 iVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~ 241 (247)
+|++|||++++.+.| +.++..|...|++|++++++
T Consensus 117 ~v~~Da~as~~~~~h-----------------~~al~~~~~~~~~v~~~~~~ 151 (157)
T cd01012 117 FVVADACGSRSKEDH-----------------ELALARMRQAGAVLTTSESV 151 (157)
T ss_pred EEEeeCCCCCCHHHH-----------------HHHHHHHHHCCCEEeeHHHH
Confidence 999999999987654 67788889999999997765
No 15
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=5.5e-28 Score=200.34 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=156.5
Q ss_pred hccCCCCccccccCCCCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCC-C
Q 025879 12 RNELPVEQESLFLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPD-V 90 (247)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~-~ 90 (247)
+.++|.+--.|.++ +.+.+|+|.||||.|+++- ++ . .+.+..++.||.+|-..|.+.|+||+||. |+.. .
T Consensus 14 ~~~~p~nk~~w~~~-p~RavLLIhDMQ~YFv~~~-~~----~-~~~~~~li~Ni~~Lr~~~~~~giPVvyTa--qp~~qs 84 (218)
T COG1535 14 AHDLPQNKVDWRFE-PKRAVLLIHDMQNYFVSPW-GE----N-CPLMEQLIANIAKLRIWCKQAGIPVVYTA--QPGEQS 84 (218)
T ss_pred cccCcccccccccC-cccceeeeehhHHhhcCCC-CC----C-CccHHHHHHHHHHHHHHHHHcCCcEEEEe--cCCcCC
Confidence 55666655668886 8899999999999999862 11 1 11356899999999999999999999998 3432 2
Q ss_pred CC------CCCCCCccCCCCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecC
Q 025879 91 PE------PPYPPHCISGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTD 164 (247)
Q Consensus 91 ~~------~~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td 164 (247)
++ ..|++....+.+...++++|.|..+| .++.|.+||||+. ++|.+.||+.|+++|||+|+.++
T Consensus 85 ~~draLL~d~WGpgl~~~p~~~~vv~~l~P~~~D---~vL~kwrYsAF~~-------s~Llq~lr~~grdQLIItGVyaH 154 (218)
T COG1535 85 PEDRALLKDFWGPGLTASPEQQKVVDELAPGADD---TVLTKWRYSAFHR-------SPLLQMLREKGRDQLIITGVYAH 154 (218)
T ss_pred HHHHHHHHHhcCCCCCCChhhhhhHHhcCCCCCc---eEEeeeehhhhhc-------ChHHHHHHHcCCCcEEEeehhhh
Confidence 22 25766555555677788999988765 7889999999999 59999999999999999999999
Q ss_pred cccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeeccccc
Q 025879 165 VCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSFG 242 (247)
Q Consensus 165 ~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~~ 242 (247)
+||. .|+++|+.+++ ++++|.||++.++.+.| .+.|..++.+.+.|+.+++..
T Consensus 155 igcl---~TA~dAFm~di-----qpfmV~DAlaDfs~~~H-----------------~msLky~A~r~a~vv~Teell 207 (218)
T COG1535 155 IGCL---TTATDAFMRDI-----QPFMVADALADFSEEEH-----------------RMSLKYVAGRCARVVMTEELL 207 (218)
T ss_pred hhhh---hhHHHHHHhcC-----cceeehhhhhhccHHHH-----------------HHHHHHHhcceeEEeeHHHHh
Confidence 9999 99999999999 99999999999998765 788999999999999988764
No 16
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=99.92 E-value=2.8e-25 Score=184.01 Aligned_cols=182 Identities=17% Similarity=0.221 Sum_probs=136.7
Q ss_pred ceEEEEEecccccccCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCC-----------C----
Q 025879 29 KTGLVLVDVVNGFCTVGSGNLAP-SQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVP-----------E---- 92 (247)
Q Consensus 29 ~tALvvID~Qn~F~~~~~g~l~~-~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~-----------~---- 92 (247)
+.+||||||||||.++- |++.. +++ ...+.+++.|+..+.-.=..||++.|||+.++. .
T Consensus 1 ~~~l~vvd~qndfi~~~-~~~~s~~E~----~~~i~Pi~~lLq~~d~dw~~Vv~TKDwHP~~HiSF~~~h~~~~p~~~~t 75 (223)
T KOG4003|consen 1 MKTLIVVDMQNDFISPL-GSLTSVPEG----EELINPISDLLQDADRDWHRVVVTKDWHPSRHISFAKNHKDKEPYSTYT 75 (223)
T ss_pred CceEEEEeccccccccc-cccccCCCc----hhhhccHHHHHHhcccccceEEEecccCcccceehhhhccCCCCCCCCc
Confidence 36899999999999963 45542 222 233445555555443322358999999987541 0
Q ss_pred --------------CCCCCCccCCCCCCccccccccccCCcceEEEecC------CcccccccccCCCcchHHHHHHhCC
Q 025879 93 --------------PPYPPHCISGTDESNLVPELQWLENETNVTLRRKD------CIDGFLGSVEKDGSNVFVNWVKSNQ 152 (247)
Q Consensus 93 --------------~~wp~~~~~gt~g~~l~~~l~~~~~~~~~~vv~K~------~~saF~~t~~~~~~t~L~~~L~~~~ 152 (247)
-.||.||+++|||.++++++-.... ..++.|+ .||+|+...+- .-|+|..+|++++
T Consensus 76 ~~~~~~~d~V~~~~vl~p~HCv~ntwG~d~~~~~~~~~~---~~~I~KG~D~~~eSYSaF~D~~GR-~kt~L~~~L~k~~ 151 (223)
T KOG4003|consen 76 YHSPRPGDDVTQEGILWPVHCVKNTWGVDQIMDQVVTKH---IKIIDKGFDTDRESYSAFHDIWGR-HKTDLNKYLEKHH 151 (223)
T ss_pred ccCCCcCCchheeeecchhhhhccCCCCCcchhhhhhhh---eeecccCcchhHHHHHHHhhhccc-chhhHHHHHHHcC
Confidence 1479999999999999998875542 3677887 49999864211 1289999999999
Q ss_pred CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCC
Q 025879 153 IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRG 232 (247)
Q Consensus 153 i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (247)
|+.++|+|+++|+||. +|+++|...|| ...||..|+++.+.+.|+ .+...+...+..++.-.-
T Consensus 152 Id~V~IAGvA~DICVk---~TaL~A~~~~y-----~t~vI~E~~~Gsst~si~---------~~~~~F~k~k~e~IS~~~ 214 (223)
T KOG4003|consen 152 IDEVYIAGVALDICVK---ATALSAAELGY-----KTTVILEYTRGSSTPSIS---------DDPEVFNKVKEELISHNI 214 (223)
T ss_pred CCeEEEeehhhHHHHH---HHHhhHHHhCc-----ceeeehhhhccCCCcccc---------cCHHHHHHhhHHHhhccc
Confidence 9999999999999999 99999999999 999999999999998763 355667777777766555
Q ss_pred cEEe
Q 025879 233 AKVV 236 (247)
Q Consensus 233 a~v~ 236 (247)
+++.
T Consensus 215 ~~~~ 218 (223)
T KOG4003|consen 215 NVVD 218 (223)
T ss_pred hhhh
Confidence 5443
No 17
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=99.68 E-value=4.4e-16 Score=127.99 Aligned_cols=156 Identities=24% Similarity=0.255 Sum_probs=121.5
Q ss_pred ccCCCCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecCCCCCCCCCCCCCccCC
Q 025879 23 FLSGDVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTHYPDVPEPPYPPHCISG 102 (247)
Q Consensus 23 ~~~~~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h~~~~~~~~wp~~~~~g 102 (247)
.++ |.+++|++-|||..|-+. .+ .+.+++.+..+|++++|-.++|+|.+. .+|++.
T Consensus 10 rl~-P~~t~fflCDmQEKFrpa----i~------yf~~iIs~~~rLl~aaril~vP~ivTE-----qYP~gL-------- 65 (201)
T KOG4044|consen 10 RLN-PSSTVFFLCDMQEKFRPA----IP------YFPSIISVTTRLLAAARILQVPVIVTE-----QYPEGL-------- 65 (201)
T ss_pred ecC-CCceEEEEechHhhhccc----ch------hhHHHHHHHHHHHHhhhhhCCcEEeec-----cccccc--------
Confidence 455 789999999999999772 32 235789999999999999999999886 234322
Q ss_pred CCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHh-CCCCEEEEEeeecCcccccchhhHHHHHHCC
Q 025879 103 TDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKS-NQIKNVLVLGICTDVCVLDFVCSTLSARNRG 181 (247)
Q Consensus 103 t~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~-~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~G 181 (247)
| ..+++|....- ...+.|+.+|.+.. +...-|.+ .|.++++++|+.|++||+ -|+.+..++|
T Consensus 66 --G-~TV~eLd~~g~---~~~~~KT~FSM~~p--------~v~~s~~~i~~~k~VvL~GiEthvCv~---qTa~dLl~rg 128 (201)
T KOG4044|consen 66 --G-KTVPELDIEGL---KLNLSKTKFSMVLP--------PVEDSLKDIFGGKTVVLFGIETHVCVL---QTALDLLERG 128 (201)
T ss_pred --c-ccchhhchhhh---cccccccceeeeCc--------hHHHHHHhccCCCeEEEEecchheehH---HHHHHHHhCC
Confidence 1 23445533221 13578999999976 55666666 678899999999999999 5999999999
Q ss_pred CCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHHhhCCcEEeecccc
Q 025879 182 FLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIAKGRGAKVVSGVSF 241 (247)
Q Consensus 182 y~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~~~~~a~v~~~~~~ 241 (247)
. +|+|+.|||++++.... ..++..++..|+-+++|+..
T Consensus 129 l-----~VhvVaDacSSRs~~DR-----------------~~Al~r~rq~G~~lstsEsv 166 (201)
T KOG4044|consen 129 L-----NVHVVADACSSRSNQDR-----------------DLALERMRQAGANLSTSESV 166 (201)
T ss_pred c-----eEEEEeehhccccchhH-----------------HHHHHHHHhcCCcccchHHH
Confidence 9 99999999999887532 45677899999999997764
No 18
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=52.66 E-value=14 Score=30.70 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=38.4
Q ss_pred chHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEec
Q 025879 142 NVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYS 193 (247)
Q Consensus 142 t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~ 193 (247)
..+.++|.+.|+..+..-|...|=|+. +-+..+.++|+ +|+|++
T Consensus 89 ~~i~~~l~~~gi~~~~~~g~EADDvIa---tla~~~~~~~~-----~v~IvS 132 (169)
T PF02739_consen 89 PYIKELLEALGIPVLEVPGYEADDVIA---TLAKKASEEGF-----EVIIVS 132 (169)
T ss_dssp HHHHHHHHHTTSEEEEETTB-HHHHHH---HHHHHHHHTTC-----EEEEE-
T ss_pred HHHHHHHHHCCCCEecCCCCcHHHHHH---HHHhhhccCCC-----EEEEEc
Confidence 367788889999999999999999999 88999999999 999885
No 19
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=46.10 E-value=53 Score=29.54 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=31.2
Q ss_pred HhCCCCEEEEEe-eecCcccccchhhHHHHHHCCCCCCCCcEEEecCCC
Q 025879 149 KSNQIKNVLVLG-ICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGC 196 (247)
Q Consensus 149 ~~~~i~~lvi~G-~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~ 196 (247)
+++|.++|+-+| ..+|.+.. .|.-+..+|+ +++++.+..
T Consensus 52 ~~~g~~~vv~~g~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~~ 91 (311)
T TIGR01275 52 LSKGADTVITVGAIQSNHARA----TALAAKKLGL-----DAVLVLREK 91 (311)
T ss_pred HHcCCCEEEEcCCchhHHHHH----HHHHHHHhCC-----ceEEEecCC
Confidence 467889999887 56677776 7888888999 888888873
No 20
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=42.42 E-value=83 Score=28.79 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHhCCCCEEEEEe-eecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 025879 148 VKSNQIKNVLVLG-ICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 195 (247)
Q Consensus 148 L~~~~i~~lvi~G-~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da 195 (247)
.+++|+++|+-+| ..+|.|.. +|.-|...|+ +++++.+.
T Consensus 62 a~~~G~~~vvs~G~s~GN~g~a----lA~aa~~~G~-----~~~iv~~~ 101 (337)
T PRK12390 62 ALAQGADTLVSIGGVQSNHTRQ----VAAVAAHLGM-----KCVLVQEN 101 (337)
T ss_pred HHHcCCCEEEEeCCCccHHHHH----HHHHHHHcCC-----eEEEEeCC
Confidence 4478999988876 55677776 9999999999 88888644
No 21
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=40.85 E-value=66 Score=29.91 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=30.8
Q ss_pred HHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCC
Q 025879 148 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGC 196 (247)
Q Consensus 148 L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~ 196 (247)
.+++|.+.+++.+-..|.|.. +|.-|...|+ +++|+....
T Consensus 77 a~~~g~~~vv~~~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~~ 116 (365)
T cd06446 77 AKRMGKKRVIAETGAGQHGVA----TATACALFGL-----ECEIYMGAV 116 (365)
T ss_pred HHHcCCCeEEEecCchHHHHH----HHHHHHHhCC-----CeEEEEcCC
Confidence 346788888875556777776 8889999999 888886543
No 22
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=40.33 E-value=84 Score=30.06 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=44.5
Q ss_pred HHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHH
Q 025879 146 NWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGL 225 (247)
Q Consensus 146 ~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l 225 (247)
...++.|++++++..-+.+.|.. .|.-|...|+ +++|+...++. ....- -.
T Consensus 110 ~~a~~~G~~~~vtetssGN~G~a----lA~aaa~~Gl-----~~~V~mp~~s~-~~k~~-------------------k~ 160 (419)
T TIGR01415 110 YYAKIEGAKRLVTETGAGQWGSA----LSLAGALFGL-----ECKVFMVRVSF-NQKPY-------------------RK 160 (419)
T ss_pred HHHHHcCCCeEEEecCchHHHHH----HHHHHHHcCC-----cEEEEEeCCCc-ccCHH-------------------HH
Confidence 34467899999886555777766 8888999999 88887765432 21100 12
Q ss_pred HHHhhCCcEEeec
Q 025879 226 FIAKGRGAKVVSG 238 (247)
Q Consensus 226 ~~~~~~~a~v~~~ 238 (247)
.+|+..||+|+.+
T Consensus 161 ~~m~~~GA~Vi~~ 173 (419)
T TIGR01415 161 YLMELYGAEVIPS 173 (419)
T ss_pred HHHHHcCCEEEEE
Confidence 4789999998864
No 23
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=38.46 E-value=85 Score=28.21 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=32.4
Q ss_pred HhCCCCEEEEEe-eecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCcc
Q 025879 149 KSNQIKNVLVLG-ICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCAT 198 (247)
Q Consensus 149 ~~~~i~~lvi~G-~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as 198 (247)
+++|+++|+-+| ..+|.+.. .+.-|..+|+ +++++.+...+
T Consensus 48 ~~~g~~~vv~~ggs~GN~g~a----lA~~a~~~G~-----~~~i~v~~~~~ 89 (307)
T cd06449 48 LAKGADTLVTVGGIQSNHTRQ----VAAVAAKLGL-----KCVLVQENWVP 89 (307)
T ss_pred HHcCCCEEEECCCchhHHHHH----HHHHHHHcCC-----eEEEEecCCCC
Confidence 367899998886 56677776 8889999999 88888886544
No 24
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=38.17 E-value=1e+02 Score=28.22 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=31.9
Q ss_pred HHhCCCCEEEEEe-eecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCc
Q 025879 148 VKSNQIKNVLVLG-ICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCA 197 (247)
Q Consensus 148 L~~~~i~~lvi~G-~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~a 197 (247)
.+++|+++|+-+| ..+|.|.. +|.-|...|+ +++++.+-..
T Consensus 61 a~~~G~~~vvs~ggs~gN~g~a----lA~~a~~~Gl-----~~~iv~~~~~ 102 (337)
T TIGR01274 61 AQAQGCTTLVSIGGIQSNQTRQ----VAAVAAHLGM-----KCVLVQENWV 102 (337)
T ss_pred HHHcCCCEEEECCCCcchHHHH----HHHHHHHcCC-----cEEEEeccCC
Confidence 3468999988765 55688877 8999999999 8888866543
No 25
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=37.87 E-value=50 Score=29.23 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=34.1
Q ss_pred CCCceEEEEEecc-cccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 025879 26 GDVKTGLVLVDVV-NGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFL 83 (247)
Q Consensus 26 ~~~~tALvvID~Q-n~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~ 83 (247)
.+.+..|++||.| +.|-..+ .+. -+...+....+-+..+|..|.|||-.-
T Consensus 62 ~~krpIv~lVD~~sQa~grre--Ell------Gi~~alAhla~a~a~AR~~GHpvI~Lv 112 (234)
T PF06833_consen 62 GPKRPIVALVDVPSQAYGRRE--ELL------GINQALAHLAKAYALARLAGHPVIGLV 112 (234)
T ss_pred CCCCCEEEEEeCCccccchHH--HHh------hHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3567899999998 3432211 011 234567777788889999999998765
No 26
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=36.71 E-value=2.7e+02 Score=26.09 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=46.6
Q ss_pred chHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchh
Q 025879 142 NVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVH 204 (247)
Q Consensus 142 t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h 204 (247)
.+|.+++.+.+-.-|+=+|+++.--+. .++....+.|- .=+++--|+++|+.+.+
T Consensus 137 ~plik~iA~~~kPiIlSTGma~~~ei~---~av~~~r~~g~-----~~i~LLhC~s~YPap~e 191 (347)
T COG2089 137 LPLIKYIAKKGKPIILSTGMATIEEIE---EAVAILRENGN-----PDIALLHCTSAYPAPFE 191 (347)
T ss_pred hHHHHHHHhcCCCEEEEcccccHHHHH---HHHHHHHhcCC-----CCeEEEEecCCCCCCHH
Confidence 478888888888999999999999999 67777778887 66788899999998755
No 27
>PLN02618 tryptophan synthase, beta chain
Probab=34.37 E-value=87 Score=29.94 Aligned_cols=61 Identities=18% Similarity=0.157 Sum_probs=43.3
Q ss_pred HhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHH
Q 025879 149 KSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIA 228 (247)
Q Consensus 149 ~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~ 228 (247)
++.|.+++|+.--+.+.|+. +|.-|...|+ +++|+..... .+.. ..-+..|
T Consensus 115 ~~~g~~~vIaesgaGNhG~A----lA~aaa~~Gl-----~~~I~m~~~~---~~~~-----------------~~nv~~m 165 (410)
T PLN02618 115 KRLGKKRIIAETGAGQHGVA----TATVCARFGL-----ECIVYMGAQD---MERQ-----------------ALNVFRM 165 (410)
T ss_pred HHcCCCEEEEEcCcHHHHHH----HHHHHHHcCC-----cEEEEEcCCc---hhhh-----------------hhhHHHH
Confidence 45788888877556788887 8999999999 9999877642 1111 1123468
Q ss_pred hhCCcEEeec
Q 025879 229 KGRGAKVVSG 238 (247)
Q Consensus 229 ~~~~a~v~~~ 238 (247)
+.+||+|+..
T Consensus 166 r~lGA~Vi~v 175 (410)
T PLN02618 166 RLLGAEVRPV 175 (410)
T ss_pred HHCCCEEEEE
Confidence 8899998764
No 28
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=33.21 E-value=1.1e+02 Score=27.83 Aligned_cols=42 Identities=7% Similarity=0.134 Sum_probs=30.9
Q ss_pred HHhCCCCEEEEEee-ecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCcc
Q 025879 148 VKSNQIKNVLVLGI-CTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCAT 198 (247)
Q Consensus 148 L~~~~i~~lvi~G~-~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as 198 (247)
.+++|.++|+-+|- .+|.+.. .|.-+..+|+ +++|+.+....
T Consensus 59 a~~~g~~~vvt~g~s~gN~g~a----lA~~a~~~G~-----~~~i~vp~~~~ 101 (331)
T PRK03910 59 ALAQGADTLITAGAIQSNHARQ----TAAAAAKLGL-----KCVLLLENPVP 101 (331)
T ss_pred HHHcCCCEEEEcCcchhHHHHH----HHHHHHHhCC-----cEEEEEcCCCC
Confidence 34678899886663 4466665 7888889999 88888777654
No 29
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=33.16 E-value=89 Score=24.47 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=35.1
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 025879 143 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 195 (247)
Q Consensus 143 ~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da 195 (247)
++.+++..++++.++|+.-.+|+.-. +..+.++|. +|+++.-.
T Consensus 90 d~~~~~~~~~~d~ivLvSgD~Df~~~-----i~~lr~~G~-----~V~v~~~~ 132 (149)
T cd06167 90 DALELAYKRRIDTIVLVSGDSDFVPL-----VERLRELGK-----RVIVVGFE 132 (149)
T ss_pred HHHHHhhhcCCCEEEEEECCccHHHH-----HHHHHHcCC-----EEEEEccC
Confidence 55566667789999999999877655 788889999 99998765
No 30
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=32.30 E-value=1.1e+02 Score=29.14 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=41.4
Q ss_pred HhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHH
Q 025879 149 KSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIA 228 (247)
Q Consensus 149 ~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~ 228 (247)
++.|.+.+|+.--+.+.++. ||.-|...|+ +++|+-.... .+.. ..-+..|
T Consensus 102 ~~~Gk~~vIaetgaGnhG~A----~A~~aa~~Gl-----~c~I~mp~~d---~~rq-----------------~~nv~~m 152 (397)
T PRK04346 102 KRMGKKRIIAETGAGQHGVA----TATAAALLGL-----ECVIYMGAED---VERQ-----------------ALNVFRM 152 (397)
T ss_pred HHcCCCeEEEecCcHHHHHH----HHHHHHHcCC-----cEEEEecCCc---hhhh-----------------hhHHHHH
Confidence 45688888774556677776 8999999999 8888876531 1111 1114578
Q ss_pred hhCCcEEee
Q 025879 229 KGRGAKVVS 237 (247)
Q Consensus 229 ~~~~a~v~~ 237 (247)
+.+||+|+.
T Consensus 153 ~~lGA~Vv~ 161 (397)
T PRK04346 153 KLLGAEVVP 161 (397)
T ss_pred HHCCCEEEE
Confidence 889999876
No 31
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=31.87 E-value=1.3e+02 Score=27.44 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=29.8
Q ss_pred HHhCCCCEEEE-EeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 025879 148 VKSNQIKNVLV-LGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 195 (247)
Q Consensus 148 L~~~~i~~lvi-~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da 195 (247)
..++|.++|+. .|..+|.+.. .|.-|..+|+ +++++...
T Consensus 65 a~~~G~~~vv~~~~ssGN~g~a----lA~~a~~~G~-----~~~ivvp~ 104 (329)
T PRK14045 65 ALSRGADVVITVGAVHSNHAFV----TGLAAKKLGL-----DAVLVLRG 104 (329)
T ss_pred HHHcCCCEEEEeCccHHHHHHH----HHHHHHHcCC-----eEEEEEeC
Confidence 34578898886 4666677766 8899999999 88887763
No 32
>PRK06381 threonine synthase; Validated
Probab=30.40 E-value=1.4e+02 Score=27.00 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=31.4
Q ss_pred HHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCC
Q 025879 145 VNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGC 196 (247)
Q Consensus 145 ~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~ 196 (247)
...++++|.++|+ ++-..|.++. .|.-|...|+ +++|+.+..
T Consensus 55 l~~a~~~g~~~lv-~aSsGN~g~a----lA~~aa~~G~-----~~~ivvp~~ 96 (319)
T PRK06381 55 VRRAMRLGYSGIT-VGTCGNYGAS----IAYFARLYGL-----KAVIFIPRS 96 (319)
T ss_pred HHHHHHcCCCEEE-EeCCcHHHHH----HHHHHHHcCC-----cEEEEECCC
Confidence 3345567887765 5677788887 7888889999 888887754
No 33
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=30.23 E-value=65 Score=30.09 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=37.1
Q ss_pred CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhh
Q 025879 153 IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAK 207 (247)
Q Consensus 153 i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~ 207 (247)
..+|.++|-+. +|=. .|++...++|| +|+++...+.++.......+
T Consensus 2 ~~~VLVtGgaG-yiGs---ht~l~L~~~gy-----~v~~vDNl~n~~~~sl~r~~ 47 (343)
T KOG1371|consen 2 GKHVLVTGGAG-YIGS---HTVLALLKRGY-----GVVIVDNLNNSYLESLKRVR 47 (343)
T ss_pred CcEEEEecCCc-ceeh---HHHHHHHhCCC-----cEEEEecccccchhHHHHHH
Confidence 46788888874 5555 59999999999 99999999999877665443
No 34
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=30.14 E-value=1.2e+02 Score=28.93 Aligned_cols=60 Identities=22% Similarity=0.175 Sum_probs=40.5
Q ss_pred HhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHH
Q 025879 149 KSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIA 228 (247)
Q Consensus 149 ~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~ 228 (247)
++.|.+.+|+.--+.+.++. +|.-|...|+ +++|+...... +.. ..-+..|
T Consensus 106 ~~~G~~~vI~etgsGnhG~A----~A~aaa~~Gl-----~~~I~m~~~d~---~~q-----------------~~nv~~m 156 (402)
T PRK13028 106 KRMGKKRLIAETGAGQHGVA----TATAAALFGL-----ECEIYMGEVDI---ERQ-----------------HPNVFRM 156 (402)
T ss_pred HHcCCCeEEEecCcHHHHHH----HHHHHHHcCC-----CEEEEECCCcc---hhh-----------------HHHHHHH
Confidence 35688888875556677776 8889999999 89988654311 111 1124578
Q ss_pred hhCCcEEee
Q 025879 229 KGRGAKVVS 237 (247)
Q Consensus 229 ~~~~a~v~~ 237 (247)
+.+||+|+.
T Consensus 157 r~~GAeVi~ 165 (402)
T PRK13028 157 KLLGAEVVP 165 (402)
T ss_pred HHcCCEEEE
Confidence 888888876
No 35
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=28.19 E-value=1.4e+02 Score=28.68 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=43.2
Q ss_pred HHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHH
Q 025879 147 WVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLF 226 (247)
Q Consensus 147 ~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~ 226 (247)
..++.|+++++...-+.+.|.. .|.-|...|+ +++|+..-++ +..... -..
T Consensus 120 ~a~~~G~~~~vtetgsGN~G~a----lA~aaa~~Gl-----~~~V~mp~~s-~~~k~~-------------------r~~ 170 (427)
T PRK12391 120 YNKKEGIKRLTTETGAGQWGSA----LALACALFGL-----ECTVFMVRVS-YEQKPY-------------------RRS 170 (427)
T ss_pred HHHHCCCCEEEEccCchHHHHH----HHHHHHHcCC-----cEEEEEecCC-cccCHH-------------------HHH
Confidence 4467899988875444667766 7888889999 8888876433 222110 123
Q ss_pred HHhhCCcEEeecc
Q 025879 227 IAKGRGAKVVSGV 239 (247)
Q Consensus 227 ~~~~~~a~v~~~~ 239 (247)
+++..||+|+.+.
T Consensus 171 ~mr~~GA~Vi~~~ 183 (427)
T PRK12391 171 LMETYGAEVIPSP 183 (427)
T ss_pred HHHHCCCEEEEEC
Confidence 7899999988743
No 36
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=27.27 E-value=1.9e+02 Score=27.20 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=29.3
Q ss_pred HhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 025879 149 KSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 195 (247)
Q Consensus 149 ~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da 195 (247)
++.|.+++++..-..+.|+. .|.-|...|+ +++|+...
T Consensus 94 ~~~g~~~vi~e~ssGN~G~a----lA~~a~~~Gl-----~~~Iv~p~ 131 (385)
T TIGR00263 94 KRMGKKRIIAETGAGQHGVA----TATAAALLGL-----DCEVYMGA 131 (385)
T ss_pred HHcCCCEEEEEcCcHHHHHH----HHHHHHHcCC-----CEEEEecC
Confidence 34678888875666677776 8889999999 88888664
No 37
>PRK08329 threonine synthase; Validated
Probab=26.85 E-value=1.5e+02 Score=27.26 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=31.6
Q ss_pred hHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCC
Q 025879 143 VFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRG 195 (247)
Q Consensus 143 ~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da 195 (247)
.+...+++.|.++|+.+. ..|.+.. .|.-|...|+ +++|+...
T Consensus 94 ~~i~~a~~~g~~~vv~aS-sGN~g~a----lA~~aa~~G~-----~~~v~vp~ 136 (347)
T PRK08329 94 VTVAKLKEEGINEVVIDS-SGNAALS----LALYSLSEGI-----KVHVFVSY 136 (347)
T ss_pred HHHHHHHHcCCCEEEEEC-CCcHHHH----HHHHHHHcCC-----cEEEEECC
Confidence 333345678999888876 7777776 7778888999 88877554
No 38
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=26.64 E-value=78 Score=29.37 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=34.2
Q ss_pred EEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchh
Q 025879 155 NVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVH 204 (247)
Q Consensus 155 ~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h 204 (247)
+|.++|-+.-+.-. |++...+.|| +|+|+.++|.+......
T Consensus 2 ~iLVtGGAGYIGSH----tv~~Ll~~G~-----~vvV~DNL~~g~~~~v~ 42 (329)
T COG1087 2 KVLVTGGAGYIGSH----TVRQLLKTGH-----EVVVLDNLSNGHKIALL 42 (329)
T ss_pred eEEEecCcchhHHH----HHHHHHHCCC-----eEEEEecCCCCCHHHhh
Confidence 57888888777666 8999999999 99999999998766544
No 39
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.57 E-value=58 Score=20.02 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=11.6
Q ss_pred cchHHHHHHhCCCC
Q 025879 141 SNVFVNWVKSNQIK 154 (247)
Q Consensus 141 ~t~L~~~L~~~~i~ 154 (247)
..+|..||.++||.
T Consensus 6 ~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 6 DSDLKSWLKSHGIP 19 (38)
T ss_pred HHHHHHHHHHcCCC
Confidence 36999999998874
No 40
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=24.67 E-value=1.4e+02 Score=29.92 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=41.7
Q ss_pred HhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHHH
Q 025879 149 KSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFIA 228 (247)
Q Consensus 149 ~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~~ 228 (247)
++.|.+++++..-+.+.++. +|.-|...|+ +++|+..... .+.. ..-+..|
T Consensus 314 ~~~g~~~vi~e~gsGnhG~A----~A~~aa~~Gl-----~~~I~m~~~~---~~~~-----------------~~nv~~m 364 (610)
T PRK13803 314 KRMGKTRIIAETGAGQHGVA----TATACALFGL-----KCTIFMGEED---IKRQ-----------------ALNVERM 364 (610)
T ss_pred HHcCCCEEEEecChHHHHHH----HHHHHHHcCC-----cEEEEEeCCc---ccch-----------------hhHHHHH
Confidence 35788888875555788887 8999999999 8888865442 1111 0113578
Q ss_pred hhCCcEEee
Q 025879 229 KGRGAKVVS 237 (247)
Q Consensus 229 ~~~~a~v~~ 237 (247)
+.+||+|+.
T Consensus 365 ~~~GA~Vi~ 373 (610)
T PRK13803 365 KLLGANVIP 373 (610)
T ss_pred HHCCCEEEE
Confidence 888998876
No 41
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=24.63 E-value=1.7e+02 Score=18.68 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEee
Q 025879 60 EMVDESVRLARVFCEKKWPVFAFLD 84 (247)
Q Consensus 60 ~il~~i~~l~~~ar~~g~pVi~~~~ 84 (247)
++-.++.++++.+...+ ||+.+++
T Consensus 6 e~r~~~~~~l~~v~~~~-pv~It~~ 29 (52)
T TIGR01552 6 EAKNKLGELLKRVRDGE-PVTITKR 29 (52)
T ss_pred HHHHHHHHHHHHHHCCC-CEEEEEC
Confidence 45567788899888777 9999984
No 42
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=23.64 E-value=4.4e+02 Score=22.28 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=35.1
Q ss_pred chHHHHHHhCC--CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCC
Q 025879 142 NVFVNWVKSNQ--IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYD 200 (247)
Q Consensus 142 t~L~~~L~~~~--i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~ 200 (247)
..+...|++.+ .++++.+|-.-- +-++.+...|+ ++|.|+-..++-.
T Consensus 97 ~~fr~Al~~m~l~~~~vvmVGDqL~-------TDVlggnr~G~-----~tIlV~Pl~~~d~ 145 (175)
T COG2179 97 RAFRRALKEMNLPPEEVVMVGDQLF-------TDVLGGNRAGM-----RTILVEPLVAPDG 145 (175)
T ss_pred HHHHHHHHHcCCChhHEEEEcchhh-------hhhhcccccCc-----EEEEEEEeccccc
Confidence 36777888755 689999996632 45668899999 9999987766633
No 43
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=23.03 E-value=2.3e+02 Score=24.18 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=30.8
Q ss_pred HHHHHHhCCC--CEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCc
Q 025879 144 FVNWVKSNQI--KNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCA 197 (247)
Q Consensus 144 L~~~L~~~~i--~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~a 197 (247)
+...+.++|. ...+++.-..|.+.. .+.-|...|+ +++++.+.-.
T Consensus 38 ~l~~a~~~g~~~~~~vv~~ssGN~g~a----lA~~a~~~g~-----~~~v~~p~~~ 84 (244)
T cd00640 38 LILLAEEEGKLPKGVIIESTGGNTGIA----LAAAAARLGL-----KCTIVMPEGA 84 (244)
T ss_pred HHHHHHHcCCCCCCEEEEeCCcHHHHH----HHHHHHHcCC-----CEEEEECCCC
Confidence 3334445663 455666666788876 7788888999 8888877654
No 44
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=22.59 E-value=94 Score=27.17 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=37.4
Q ss_pred chHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEec
Q 025879 142 NVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYS 193 (247)
Q Consensus 142 t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~ 193 (247)
..+.++|+..|+..+..-|...|-++. +-+..+...|+ +++|++
T Consensus 88 ~~~~~~l~~~gi~~i~~~~~EADD~ia---~la~~~~~~g~-----~~~I~S 131 (240)
T cd00008 88 PLIKELLEALGIPVLEIEGYEADDVIG---TLAKKAEAEGY-----KVVIVS 131 (240)
T ss_pred HHHHHHHHHCCCCEEecCCcCHHHHHH---HHHHHHHHcCC-----eEEEEe
Confidence 367788889999999999999988888 66777888899 898887
No 45
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=22.51 E-value=2.2e+02 Score=29.34 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=42.7
Q ss_pred HHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCccCCcchhhhhcccccCCCchhhHHHHHHHH
Q 025879 148 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCATYDFPVHVAKNIKDALPHPQDLMHHIGLFI 227 (247)
Q Consensus 148 L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~as~~~~~h~a~~~~~~~~~~~~~~~~~~l~~ 227 (247)
.++.|.+++++.--+.+.|+. +|.-|...|+ +++|+........+. .-+..
T Consensus 374 A~~~G~~~~IvetssGNhG~A----lA~aaA~~Gl-----~c~Ivmp~~~~~~~~--------------------~nv~~ 424 (695)
T PRK13802 374 VKRMGKTRVIAETGAGQHGVA----TATVCAMLGL-----KCRIYMGQIDARRQA--------------------LNVAR 424 (695)
T ss_pred HHHcCCCCEEEEECcHHHHHH----HHHHHHHcCC-----CEEEEEeCCcccccH--------------------HHHHH
Confidence 345688888887667788887 8999999999 888887654221111 11346
Q ss_pred HhhCCcEEee
Q 025879 228 AKGRGAKVVS 237 (247)
Q Consensus 228 ~~~~~a~v~~ 237 (247)
|+.+||+|+.
T Consensus 425 mr~lGAeVi~ 434 (695)
T PRK13802 425 MRMLGAEVVE 434 (695)
T ss_pred HHHcCCEEEE
Confidence 8888888875
No 46
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=22.21 E-value=2e+02 Score=23.49 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=23.2
Q ss_pred CceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 025879 28 VKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFL 83 (247)
Q Consensus 28 ~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~ 83 (247)
.+.|++|||...+... ...+.++.++..+.|+|++-
T Consensus 94 ~D~ailvVda~~g~~~--------------------~~~~~l~~~~~~~~p~ivvl 129 (188)
T PF00009_consen 94 ADIAILVVDANDGIQP--------------------QTEEHLKILRELGIPIIVVL 129 (188)
T ss_dssp SSEEEEEEETTTBSTH--------------------HHHHHHHHHHHTT-SEEEEE
T ss_pred cccceeeeeccccccc--------------------ccccccccccccccceEEee
Confidence 4678888888766321 23455677788888977664
No 47
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=21.98 E-value=1.9e+02 Score=25.63 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=31.9
Q ss_pred HHHHHhCCCC---EEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCc
Q 025879 145 VNWVKSNQIK---NVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCA 197 (247)
Q Consensus 145 ~~~L~~~~i~---~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~a 197 (247)
...+++.|.. ..+++....|.|.. .|.-|...|+ +++|+.....
T Consensus 41 l~~a~~~g~~~~~~~vv~~SsGN~g~a----lA~~a~~~G~-----~~~i~vp~~~ 87 (291)
T cd01561 41 IEDAEKRGLLKPGTTIIEPTSGNTGIG----LAMVAAAKGY-----RFIIVMPETM 87 (291)
T ss_pred HHHHHHcCCCCCCCEEEEeCCChHHHH----HHHHHHHcCC-----eEEEEECCCC
Confidence 3344556652 44677888888887 8888999999 8888876643
No 48
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=21.41 E-value=1.9e+02 Score=26.25 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=25.7
Q ss_pred CCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCC
Q 025879 153 IKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGC 196 (247)
Q Consensus 153 i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~ 196 (247)
.++|+.++ ..|.++. .|.-|...|+ +++|+....
T Consensus 51 ~~~vv~aS-sGN~g~a----lA~~a~~~G~-----~~~iv~p~~ 84 (316)
T cd06448 51 CVHVVCSS-GGNAGLA----AAYAARKLGV-----PCTIVVPES 84 (316)
T ss_pred CCeEEEeC-CcHHHHH----HHHHHHHcCC-----CEEEEECCC
Confidence 67776666 5777776 7788888999 888887764
No 49
>PRK10098 putative dehydrogenase; Provisional
Probab=20.67 E-value=2e+02 Score=26.92 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=32.4
Q ss_pred CCceEEEEEecccccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhCCCcEEEEeecC
Q 025879 27 DVKTGLVLVDVVNGFCTVGSGNLAPSQPDGQISEMVDESVRLARVFCEKKWPVFAFLDTH 86 (247)
Q Consensus 27 ~~~tALvvID~Qn~F~~~~~g~l~~~~~~~~~~~il~~i~~l~~~ar~~g~pVi~~~~~h 86 (247)
....++++||-+|+|-. +. .-.-+...+++||+.|+=++.+++.|
T Consensus 75 ~~~~a~~~vDg~~g~G~-----~a----------~~~Am~~aie~Ar~~Gi~~v~vrnS~ 119 (350)
T PRK10098 75 KDAGAVLTLDGDRGFGQ-----VV----------AHEAMALGIERARQHGICAVALRNSH 119 (350)
T ss_pred ecCCcEEEEECCCCccH-----HH----------HHHHHHHHHHHHHHhCEEEEEEecCC
Confidence 35679999999999844 21 01224567899999999888887643
No 50
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=20.52 E-value=2.4e+02 Score=25.43 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHhCCCCEEEEEeeecCcccccchhhHHHHHHCCCCCCCCcEEEecCCCc
Q 025879 148 VKSNQIKNVLVLGICTDVCVLDFVCSTLSARNRGFLAPLEDVIVYSRGCA 197 (247)
Q Consensus 148 L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~Gy~~~~~~ViVv~Da~a 197 (247)
+.++|.++|+.+ ...|.|+. .|.-|..+|+ +++++.+...
T Consensus 65 a~~~g~~~vv~~-SsGN~g~a----lA~~a~~~G~-----~~~ivvp~~~ 104 (324)
T cd01563 65 AKELGVKAVACA-STGNTSAS----LAAYAARAGI-----KCVVFLPAGK 104 (324)
T ss_pred HHHcCCCEEEEe-CCCHHHHH----HHHHHHHcCC-----ceEEEEeCCC
Confidence 445676666544 67777776 6778888899 8887776544
No 51
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=20.19 E-value=1.9e+02 Score=27.12 Aligned_cols=88 Identities=11% Similarity=-0.001 Sum_probs=60.2
Q ss_pred CCCCCCccccccccccCCcceEEEecCCcccccccccCCCcchHHHHHHhCCCCEEEEEeeecCcccccchhhHHHHHHC
Q 025879 101 SGTDESNLVPELQWLENETNVTLRRKDCIDGFLGSVEKDGSNVFVNWVKSNQIKNVLVLGICTDVCVLDFVCSTLSARNR 180 (247)
Q Consensus 101 ~gt~g~~l~~~l~~~~~~~~~~vv~K~~~saF~~t~~~~~~t~L~~~L~~~~i~~lvi~G~~Td~CV~~~~~Ta~~A~~~ 180 (247)
.|+||-...+-.+.+.. ++.++.+.---+..- ..+.+-|..+.+.-++|+=..|.-.|.|--...+.+..+
T Consensus 100 ~G~wg~ra~D~~~r~ga--~V~~v~~~~G~~~~l-------e~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~ 170 (385)
T KOG2862|consen 100 TGTWGQRAADCARRYGA--EVDVVEADIGQAVPL-------EEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCH 170 (385)
T ss_pred echHHHHHHHHHHhhCc--eeeEEecCcccCccH-------HHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhh
Confidence 35555544444444432 244555442222211 366777888999999999999999999754556788888
Q ss_pred CCCCCCCcEEEecCCCccCCcc
Q 025879 181 GFLAPLEDVIVYSRGCATYDFP 202 (247)
Q Consensus 181 Gy~~~~~~ViVv~Da~as~~~~ 202 (247)
-| +..++.|++++.-.+
T Consensus 171 k~-----~~lllVD~VaSlggt 187 (385)
T KOG2862|consen 171 KH-----EALLLVDTVASLGGT 187 (385)
T ss_pred cC-----CeEEEEechhhcCCc
Confidence 89 999999999997654
Done!