BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025880
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 51.6 bits (122), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196
EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR + N
Sbjct: 15 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 42.4 bits (98), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 72
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193
+E E +C IC E + V NC H+ C C EW R CP CR +K
Sbjct: 61 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193
+E E +C IC E + V NC H+ C C EW R CP CR +K
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193
+E E +C IC E + V NC H+ C C EW R CP CR +K
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLKRVNS 197
E +CGICME + V CNH +C C++ + S CPFCR +RV+S
Sbjct: 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCR---RRVSS 62
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 149 EECGICME--TNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 195
E C IC+E +N + LP C HA C C W ++ +CP C+ ++ V
Sbjct: 6 ERCPICLEDPSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 35.0 bits (79), Expect = 0.035, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQ---SCPFCRDSLKR 194
++ E C IC++ K V +C H CLKC + S CP C+ S+++
Sbjct: 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 35.0 bits (79), Expect = 0.043, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 151 CGICMETNSKIVL-------PNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196
C ICM+ S+IV C H C +C R+ + +CP CR K++N
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR---KKIN 62
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 34.7 bits (78), Expect = 0.046, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 150 ECGICMET----NSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSG 198
EC +C E S LP CNH C W + SCP CR SL N+
Sbjct: 17 ECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 34.3 bits (77), Expect = 0.060, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 151 CGICMETNSKIVL-------PNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196
C ICM+ S+IV C H C +C R+ + +CP CR K++N
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR---KKIN 67
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 34.3 bits (77), Expect = 0.063, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 151 CGICMETNSKIVL-------PNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196
C ICM+ S+IV C H C +C R+ + +CP CR K++N
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR---KKIN 55
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 151 CGICME-TNSKIVLPNCNHAMCLKCYREWRIRSQSCPFC 188
CGIC E N +++P C+H C C R++ CP C
Sbjct: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 33.5 bits (75), Expect = 0.10, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 145 IEREEECGICMETNSKIVLPNCNH-AMCLKCYREWRIRSQSCPFCRDSLK 193
++ E C +CM+ IV C H +C C R CP CR ++K
Sbjct: 21 LQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIK 66
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 33.1 bits (74), Expect = 0.14, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 151 CGICM---ETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCR 189
C +CM E+ + + CNH KC +W +++CP CR
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 32.7 bits (73), Expect = 0.18, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193
++ E C +C++ IV C H +C +C Q CP CR ++
Sbjct: 10 LQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGL----QLCPICRAPVR 54
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREW---RIRSQSCPFC 188
+++ E C +C+E + V+ C H C C W R CP C
Sbjct: 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 150 ECGICM----ETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCR 189
EC +C+ + LP C H +C W +CP CR
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 32.3 bits (72), Expect = 0.27, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192
EC IC++T V C H C C + + C CR +
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 145 IEREEECGICMETNSKIVLPNCNH-AMCLKCYREWRIRSQSCPFCRDSLK 193
++ E C +CM+ +V C H +C +C R CP CR +K
Sbjct: 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIK 337
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 32.0 bits (71), Expect = 0.35, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPF 187
++ E C IC++ K V +C H CLKC + I SC F
Sbjct: 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQ--IGETSCGF 57
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 31.6 bits (70), Expect = 0.41, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 149 EECGICM--ETNSKIVLPNCNHAM-CLKCYREWRIRSQSCPFCRDSLKRV 195
E C IC N IV H M C C ++ + R++ CP CR ++ +
Sbjct: 8 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 57
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 31.6 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 149 EECGICM--ETNSKIVLPNCNHAM-CLKCYREWRIRSQSCPFCRDSLKRV 195
E C IC N IV H M C C ++ + R++ CP CR ++ +
Sbjct: 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 143 ADIEREEECGICMETNSKIVLPNCNHAMCLKCY-REWRIRSQSCPFCRDSLKR 194
+ +E +C C E + + C H +C C R +R + SCP CR L R
Sbjct: 47 SKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 150 ECGICMETNSKIVLPN-------CNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196
C ICM+ S+IV C H C +C R+ + +CP CR K++N
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR---KKIN 59
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 150 ECGICMETNSKIVLPN-------CNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196
C ICM+ S+IV C H C +C R+ + +CP CR K++N
Sbjct: 74 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR---KKIN 124
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 144 DIEREEECGICMET---NSKIVLPNCNHAMCLKCYREWRIRSQSCPFC 188
++ E C +C+E ++ + C HA KC +W + CP C
Sbjct: 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 141 TDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-------QSCPFC 188
+ +++ E C IC+E ++ + +C H++C C + SCP C
Sbjct: 5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAM-CLKCYREWRIRSQSCPFC 188
++ E+ C ICM+ N IV C H + C +C CP C
Sbjct: 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMC 61
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAM-CLKCYREWRIRSQSCPFC 188
++ E+ C ICM+ N IV C H + C +C CP C
Sbjct: 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMC 61
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 143 ADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS------QSCPFCRDSLKRVN 196
+++ E C IC+E ++ + +C H+ C C +S SCP CR S + N
Sbjct: 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 28.9 bits (63), Expect = 3.0, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAM-CLKCYREWRIRSQSCPFC 188
++ E+ C ICM+ N IV C H + C +C CP C
Sbjct: 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMC 62
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 151 CGICMET--NSKIV---LPNCNHAMCLKCYREWRIRSQSCPFC 188
C IC+E S++V LP C H + CY E CP C
Sbjct: 8 CPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2CT7|A Chain A, Solution Structure Of The Ibr Domain Of The Ring Finger
Protein 31 Protein
Length = 86
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 160 KIVLPNCNHAMCLKCYREW--RIRSQSCP-FCRDSLKRVNSG 198
+ P C+ C++C R+W + R +SC F + KR+NSG
Sbjct: 43 EATCPQCHQTFCVRCKRQWEEQHRGRSCEDF--QNWKRMNSG 82
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 150 ECGICMETNSKIVLPNCNHAMC----LKCYREWRIRSQSCPFCRDSLKR 194
EC IC+E + V C+H C LK + + SQ CP C++ + +
Sbjct: 23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ-CPLCKNDITK 70
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKC----YREWRIR--SQSCPFCR 189
I+ E C IC+E + V +CNH+ C C Y R +CP CR
Sbjct: 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCY-REWRIRSQSCPFCRDSLKR 194
+E+ C C E + V C H +C C R ++ + SCP CR L +
Sbjct: 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 142 DADIEREEECGICME-TNSKIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDS 191
D I E C IC + +V+P C ++ C +C R + S +CP C +
Sbjct: 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,310,427
Number of Sequences: 62578
Number of extensions: 208374
Number of successful extensions: 583
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 57
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)