BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025880
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Query: 116 TEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCY 175
+ED Q +++M R + Q TD EEEC ICM+ + ++LP C H+ C KC
Sbjct: 125 SEDTCQASMWMGRVK--------QLTD-----EEECCICMDGKADLILP-CAHSFCQKCI 170
Query: 176 REWRIRSQSCPFCRDSLKRVNSGDLWVYMDS 206
+W +S++CP CR + N + WV D+
Sbjct: 171 DKWSGQSRNCPVCRIQVTAAN--ESWVMSDA 199
>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
Length = 230
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 121 QKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI 180
Q +++M R ++ DE+ EC ICM+ ++LP C H+ C KC +W
Sbjct: 138 QASLWMGRLKQPTDED-------------ECCICMDGRVDLILP-CAHSFCQKCIDKWSD 183
Query: 181 RSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSAT 214
R +SCP CR + +GD WV D+ D AT
Sbjct: 184 RHRSCPVCRRQV--TGAGDSWVVSDAPTEDDIAT 215
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 197
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 198 GDLWVYMDS 206
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 197
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 198 GDLWVYMDS 206
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 197
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 148 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 199
Query: 198 GDLWVYMDS 206
+ WV D+
Sbjct: 200 NESWVVSDA 208
>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1
Length = 230
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 197
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 198 GDLWVYMDS 206
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1
Length = 230
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 197
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 198 GDLWVYMDS 206
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 138 RQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS 197
+Q TD EEEC ICM+ + ++LP C H+ C KC +W R ++CP CR L+ +
Sbjct: 147 KQLTD-----EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGA 198
Query: 198 GDLWVYMDS 206
+ WV D+
Sbjct: 199 NESWVVSDA 207
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3
Length = 474
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 112 GVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMC 171
G T D + + R EEQ Q A E C IC E+N + + C H +C
Sbjct: 312 GKTHNPDLTELGQAEPQQRIHVSEEQLQLYWAMDSTFELCKICAESNKDVKIEPCGHLLC 371
Query: 172 LKCYREWRIR-SQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKL 230
C W+ SQ+CPFCR +K + ++ + DS + + R L L ++
Sbjct: 372 SCCLAAWQHSDSQTCPFCRCEIKGWEAVSIYQFHGQATAEDSGNSSDQEGRELEL--GQV 429
Query: 231 PL 232
PL
Sbjct: 430 PL 431
>sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon
nigroviridis GN=mkrn1 PE=3 SV=1
Length = 372
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 31/101 (30%)
Query: 133 DDEEQRQYTDADIEREEE---------------CGICMETNSKI---------VLPNCNH 168
D+ ++ Q+T A IE E+ CG+CME + +L NCNH
Sbjct: 193 DNSQRSQHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCNH 252
Query: 169 AMCLKCYREWRIRSQ-------SCPFCRDSLKRVNSGDLWV 202
CLKC R+WR Q SCP CR + V + WV
Sbjct: 253 CYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWV 293
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 151 CGICMETNSKI---------VLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CGICME + +L NCNH CLKC R+WR Q SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 195 VNSGDLWV 202
V + WV
Sbjct: 341 VIPSEYWV 348
>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens
GN=MKRN3 PE=1 SV=1
Length = 507
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 16/68 (23%)
Query: 151 CGICMET-------NSK--IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CGICME N + +L NCNH+ C++C R WR Q SCP CR + +
Sbjct: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSEL 370
Query: 195 VNSGDLWV 202
V + WV
Sbjct: 371 VIPSEFWV 378
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 151 CGICMETNSKI---------VLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CGICME + +L NCNH CLKC R+WR Q SCP CR +
Sbjct: 277 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 336
Query: 195 VNSGDLWV 202
V + WV
Sbjct: 337 VIPSEYWV 344
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 151 CGICMETNSKI---------VLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CGICME + +L NCNH CLKC R+WR Q SCP CR +
Sbjct: 281 CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 340
Query: 195 VNSGDLWV 202
V + WV
Sbjct: 341 VIPSEYWV 348
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 94 SIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGI 153
S ++F AII +L++ T+++K+K + EE + + +E E +C I
Sbjct: 358 SKKDFEAIIQAKNKELEQ----TKEEKEKV-------QAQKEEVLSHMNDVLENELQCII 406
Query: 154 CMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193
C E + V NC H+ C C EW R CP CR +K
Sbjct: 407 CSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 446
>sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens
GN=MKRN4P PE=5 SV=1
Length = 485
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 151 CGICMET---------NSKIVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CGICME + +L NCNH CLKC R+WR + SCP CR +
Sbjct: 316 CGICMEVVYEKANPNEHRFGILSNCNHTFCLKCIRKWRSAKEFESRIVKSCPQCRITSNF 375
Query: 195 VNSGDLWV 202
V + WV
Sbjct: 376 VIPSEYWV 383
>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1
Length = 485
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 113 VTDTEDKKQKAVYMERYRRRDDEEQ--RQYTDADIEREEECGICMETNSKIVLPNCNHAM 170
V +DK+ + E+ + + +E+ Q T+ +E E +C IC E + V NC H+
Sbjct: 353 VLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEV-LESELQCSICSELFIEAVTLNCAHSF 411
Query: 171 CLKCYREWRIRSQSCPFC 188
C C EWR R CP C
Sbjct: 412 CQHCISEWRNRKDKCPMC 429
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 16/68 (23%)
Query: 151 CGICME-----TNSK----IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CGICME TN +L NC+H+ CLKC R+WR Q SCP CR +
Sbjct: 247 CGICMEVVYEKTNPSERRFGILSNCSHSYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 306
Query: 195 VNSGDLWV 202
+ + WV
Sbjct: 307 IIPSEYWV 314
>sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus
GN=Mkrn3 PE=2 SV=2
Length = 544
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 151 CGICMETNSKIVLPN---------CNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CGICME + P+ CNH CL+C R WR +Q SCP CR S
Sbjct: 347 CGICMEVVYEKADPSDRRFGILFSCNHTYCLRCIRRWRSATQFENRISKSCPQCRVSSGF 406
Query: 195 VNSGDLWV 202
V + WV
Sbjct: 407 VIPSEFWV 414
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 94 SIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGI 153
S ++F AII +L++ T E +K +A EE + + +E E +C I
Sbjct: 357 SKKDFEAIIQAKNKELEQ--TKEEKEKMQA---------QKEEVLSHMNDVLENELQCII 405
Query: 154 CMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193
C E + V NC H+ C C EW R CP CR +K
Sbjct: 406 CSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 445
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 94 SIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGI 153
S + F AII +L++ T+++K+K + EE + + +E E +C I
Sbjct: 359 SKKNFEAIIQAKDKELEQ----TKEEKEKV-------QAQKEEVLSHMNDVLENELQCII 407
Query: 154 CMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193
C E + V NC H+ C C EW R CP CR +K
Sbjct: 408 CSEYFVEAVTLNCAHSFCSYCINEWMKRKVECPICRKDIK 447
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLKRVNSGDLWVYMDSRDI 209
C IC E + + + C H MC C W+ Q CPFCR +K G + +D D
Sbjct: 379 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK----GTEPIVVDPFDP 434
Query: 210 IDSATVTREN 219
S ++ R+
Sbjct: 435 RGSGSLLRQG 444
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 85 TMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDAD 144
T E S +F II +LQ +T+++K+K V+ ++ EE + +
Sbjct: 327 TQLMQELNRSKNDFEQIIEAKNKELQ----ETKEEKEK-VFAQK------EEVLNHMNDV 375
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192
++ E +C IC E + V NC H+ C C + W+ R + CP CR +
Sbjct: 376 LDNELQCIICSEHFIEAVTLNCAHSFCSYCIKSWKKRKEECPICRQEI 423
>sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2
Length = 906
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLKRVNSGDLWVYMDSRDI 209
C IC E + + + C H MC C W+ Q CPFCR +K G + +D D
Sbjct: 381 CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK----GTEPIVVDPFDP 436
Query: 210 IDSATVTREN 219
S ++ R+
Sbjct: 437 RGSGSLLRQG 446
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 97 EFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICME 156
+F II +LQ +T+++K+K + EE + + ++ E +C IC E
Sbjct: 334 DFEQIIQAKNKELQ----ETKEEKEKVCAQK-------EEVLNHMNDVLDNELQCIICSE 382
Query: 157 TNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192
+ V NC H+ C C + WR R + CP CR +
Sbjct: 383 HFIEAVTLNCAHSFCSYCIKSWRKRKEECPICRQEI 418
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 144 DIEREEECGICM----ETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196
+E+ +C +C+ +T+ +LP C+HA L C W + + +CP CR SL N
Sbjct: 200 SLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSN 256
>sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola
quinqueradiata GN=mkrn1 PE=2 SV=1
Length = 435
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 31/101 (30%)
Query: 133 DDEEQRQYTDADIEREEE---------------CGICME-----TNSK----IVLPNCNH 168
D+ ++ ++T A IE E+ CG+CME N +L NC+H
Sbjct: 195 DNNQRSEHTKACIEAHEKDMEISFAIQRSKDMMCGVCMEVVFEKANPSERRFGILSNCSH 254
Query: 169 AMCLKCYREWRIRSQ-------SCPFCRDSLKRVNSGDLWV 202
CLKC R+WR Q SCP CR + V + WV
Sbjct: 255 CYCLKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWV 295
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 69 GLLRILIYKVYVDGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMER 128
G +++L+Y ++ + T A IR Y ++ Q ++ VTD ++ M
Sbjct: 220 GFIKVLLYMAFMTIMIKVHTFPLFA-IRPMYL----AMRQFKKAVTDAIMSRRAIRNMNT 274
Query: 129 YRRRDDEEQRQYTDADIEREEECGIC---METNSKIVLPNCNHAMCLKCYREWRIRSQSC 185
E+ Q D C IC M T +K LP CNH C R W R Q+C
Sbjct: 275 LYPDATPEELQAVD------NVCIICREEMVTGAK-RLP-CNHIFHTSCLRSWFQRQQTC 326
Query: 186 PFCRDSLKRVN 196
P CR + R +
Sbjct: 327 PTCRMDVLRAS 337
>sp|Q9UTL9|YIV5_SCHPO Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC144.05 PE=3 SV=1
Length = 1375
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 104 PSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVL 163
P + L R + + + Q+ + RRR ++ E + C IC + + +
Sbjct: 1045 PGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFI 1104
Query: 164 PNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDI 209
C H C C W S SCP C+ L + N+ + +SRDI
Sbjct: 1105 TTCGHLYCSFCLEAWLKHSSSCPMCKTKLNKNNA---YYIGESRDI 1147
>sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes
GN=mkrn1 PE=2 SV=1
Length = 429
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 151 CGICMETNSKI---------VLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CG+CME + +L NC+H CLKC R+WR Q SCP CR +
Sbjct: 226 CGVCMEVVFEKANPSERRFGILSNCSHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 285
Query: 195 VNSGDLWV 202
V + WV
Sbjct: 286 VIPSEYWV 293
>sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio
GN=mkrn1 PE=2 SV=1
Length = 439
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 151 CGICME-----TNSK----IVLPNCNHAMCLKCYREWRIRSQ-------SCPFCRDSLKR 194
CG+CME TN +L NC H CLKC R+WR Q SCP CR +
Sbjct: 236 CGVCMEVVFEKTNPSERRFGILSNCCHCYCLKCIRKWRSAKQFESKIIKSCPECRITSNF 295
Query: 195 VNSGDLWV 202
V + WV
Sbjct: 296 VIPSEYWV 303
>sp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2
SV=1
Length = 176
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 147 REEECGICM----ETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192
+ EC IC+ E + VLP CNH +KC W + SCP CR SL
Sbjct: 109 KATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 69 GLLRILIYKVYVDGTTTMSTHERKASIREFYAI--IYPSLLQLQRGVTDTEDKKQKAVYM 126
G +++L+Y ++ T K +AI +Y ++ Q ++ VTD ++ M
Sbjct: 220 GFIKVLLYMAFM-------TIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNM 272
Query: 127 ERYRRRDDEEQRQYTDADIEREEECGIC---METNSKIVLPNCNHAMCLKCYREWRIRSQ 183
E Q TD C IC M T +K LP CNH C R W R Q
Sbjct: 273 NTLYPDATPEDLQATD------NVCIICREEMVTGAK-KLP-CNHIFHSSCLRSWFQRQQ 324
Query: 184 SCPFCRDSLKRVN 196
+CP CR + R +
Sbjct: 325 TCPTCRMDVLRAS 337
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 69 GLLRILIYKVYVDGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMER 128
G +++L+Y ++ + T A IR Y ++ Q ++ VTD ++ M
Sbjct: 220 GFIKVLLYMAFMTIMIKVHTFPLFA-IRPMYL----AMRQFKKAVTDAIMSRRAIRNMNT 274
Query: 129 YRRRDDEEQRQYTDADIEREEECGIC---METNSKIVLPNCNHAMCLKCYREWRIRSQSC 185
E+ Q D C IC M T +K LP CNH C R W R Q+C
Sbjct: 275 LYPDATPEELQAMD------NVCIICREEMVTGAK-RLP-CNHIFHTSCLRSWFQRQQTC 326
Query: 186 PFCRDSLKRVN 196
P CR + R +
Sbjct: 327 PTCRMDVLRAS 337
>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana
GN=ATL12 PE=3 SV=1
Length = 390
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 150 ECGICMETNSKI----VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN-SGDLWVYM 204
EC +C+ + +LP C HA + C +W + +CP CR+ RVN DL V
Sbjct: 123 ECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRN---RVNIEDDLSVLG 179
Query: 205 DSRDI--IDSATVTRENLRRLFLYIDK 229
+S I + + TRE RL +YI++
Sbjct: 180 NSSTSLRILNQSETREEDSRLEIYIER 206
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2
SV=1
Length = 487
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 94 SIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGI 153
S ++F II +L+R T+++K K + EE + + +E E +C I
Sbjct: 359 SKKDFEKIIQAKNKELER----TKEEKDKV-------QAQKEEVLSHMNDVLENELQCII 407
Query: 154 CMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK-RVNS 197
C E + V NC H+ C C EW R CP CR ++ R NS
Sbjct: 408 CSEYFIEAVTLNCAHSFCSFCISEWMKRKVECPICRKDIESRTNS 452
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 147 REEECGICM---ETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192
+ EC IC+ E K+ VLP CNH ++C W + SCP CR SL
Sbjct: 110 KATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 14/130 (10%)
Query: 69 GLLRILIYKVYVDGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMER 128
G +++L+Y ++ + T A IR Y ++ Q ++ VTD ++ M
Sbjct: 214 GFIKVLLYMAFMTIMVKVHTFPLFA-IRPMYL----AMRQFKKAVTDAVMSRRAIRNMNT 268
Query: 129 YRRRDDEEQRQYTDADIEREEECGICME--TNSKIVLPNCNHAMCLKCYREWRIRSQSCP 186
E+ Q D C IC E + LP CNH C R W R Q+CP
Sbjct: 269 LYPDATAEELQAMD------NVCIICREEMVSGAKRLP-CNHIFHTSCLRSWFQRQQTCP 321
Query: 187 FCRDSLKRVN 196
CR + R +
Sbjct: 322 TCRMDVLRAS 331
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 126 MERYRRRDDEEQRQYTDADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW---RIRS 182
M + EE ++ D EC IC++ V+ C H C C +W R +
Sbjct: 1 MASETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNN 60
Query: 183 QSCPFCRDSL 192
Q CP C+ ++
Sbjct: 61 QVCPVCKSAI 70
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 16/131 (12%)
Query: 69 GLLRILIYKVYVDGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMER 128
G +++L+Y ++ + T A IR Y ++ Q ++ VTD ++ M
Sbjct: 214 GFIKVLLYVAFMTIMVKVHTFPLFA-IRPMYL----AMRQFKKAVTDAIMSRRAIRNMNT 268
Query: 129 YRRRDDEEQRQYTDADIEREEECGIC---METNSKIVLPNCNHAMCLKCYREWRIRSQSC 185
E+ Q D C IC M T +K LP CNH C R W R Q+C
Sbjct: 269 LYPDATAEELQAMD------NVCIICREEMVTGAK-RLP-CNHIFHTSCLRSWFQRQQTC 320
Query: 186 PFCRDSLKRVN 196
P CR + R +
Sbjct: 321 PTCRMDVLRAS 331
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYM 204
I++ EC IC E + +C H C +C W S+SCP CR L S VY
Sbjct: 79 IKKTLECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPSPAYLVY- 137
Query: 205 DSRDIIDSATVTRENLRRLFLYIDKLPL-----IIPDNLFDPYDSH 245
+I++ V N + I++ P ++ D +F DSH
Sbjct: 138 ---EIMN--VVAASNSGFPLVGINENPAKKQKEVLFDGMFKQEDSH 178
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREW---RIRSQSCPFCRDSLKR 194
EC IC+ET + V+ C H C C +W R Q CP C+ + R
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISR 73
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
Query: 150 ECGICM----ETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMD 205
EC +C+ E+ + VLPNC H + C W +CP CR ++
Sbjct: 118 ECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS------------LVE 165
Query: 206 SRDIIDSATVTRENLRRLFLYIDKLPLII 234
S I+S RE R + + +D P+++
Sbjct: 166 SLAGIESTAAARE--REVVIAVDSDPVLV 192
>sp|Q3TTA7|CBLB_MOUSE E3 ubiquitin-protein ligase CBL-B OS=Mus musculus GN=Cblb PE=1 SV=3
Length = 982
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 416
>sp|Q13191|CBLB_HUMAN E3 ubiquitin-protein ligase CBL-B OS=Homo sapiens GN=CBLB PE=1 SV=2
Length = 982
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 416
>sp|Q8K4S7|CBLB_RAT E3 ubiquitin-protein ligase CBL-B OS=Rattus norvegicus GN=Cblb PE=2
SV=1
Length = 938
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 151 CGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193
C IC E + + + C H MC C W+ Q CPFCR +K
Sbjct: 373 CKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 416
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREW---RIRSQSCPFCRDSLKR 194
EC IC+ET + V+ C H C C +W R Q CP C+ + R
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISR 73
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 150 ECGICMETNSKIVLPNCNHAMCLKCYREW---RIRSQSCPFCRDSLKR 194
EC IC+ET + V+ C H C C +W R Q CP C+ + R
Sbjct: 26 ECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISR 73
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1
Length = 488
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK-RVNS 197
+E E +C IC E + V NC H+ C C EW R CP CR ++ R NS
Sbjct: 400 LENELQCIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICRKDIESRTNS 453
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 151 CGICME--TNSKIV--LPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193
C IC++ +I LP C+H L C +W IR SCP CR ++K
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAVK 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,891,224
Number of Sequences: 539616
Number of extensions: 3572766
Number of successful extensions: 14989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 417
Number of HSP's that attempted gapping in prelim test: 14548
Number of HSP's gapped (non-prelim): 759
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)