Query 025880
Match_columns 247
No_of_seqs 368 out of 1714
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 99.8 1.1E-19 2.3E-24 166.0 2.8 220 18-239 2-267 (344)
2 PHA02929 N1R/p28-like protein; 99.3 2E-12 4.3E-17 113.1 3.4 56 146-201 172-235 (238)
3 PF13639 zf-RING_2: Ring finge 99.2 2.5E-12 5.3E-17 83.9 1.4 41 149-189 1-44 (44)
4 PF13920 zf-C3HC4_3: Zinc fing 99.2 7.4E-12 1.6E-16 83.9 2.7 47 148-194 2-49 (50)
5 PHA02926 zinc finger-like prot 99.2 8.9E-12 1.9E-16 106.7 3.1 56 146-201 168-238 (242)
6 PLN03208 E3 ubiquitin-protein 99.2 1.1E-11 2.5E-16 104.6 3.2 53 142-194 12-80 (193)
7 PF15227 zf-C3HC4_4: zinc fing 99.1 5.1E-11 1.1E-15 77.2 2.5 38 151-188 1-42 (42)
8 KOG0317 Predicted E3 ubiquitin 99.1 5.6E-11 1.2E-15 105.1 3.2 48 146-193 237-284 (293)
9 PF13923 zf-C3HC4_2: Zinc fing 99.1 6.8E-11 1.5E-15 75.2 2.5 38 151-188 1-39 (39)
10 PF12678 zf-rbx1: RING-H2 zinc 99.0 1.2E-10 2.6E-15 84.3 2.8 42 148-189 19-73 (73)
11 COG5243 HRD1 HRD ubiquitin lig 99.0 4.6E-10 1E-14 102.3 7.0 49 146-194 285-346 (491)
12 KOG0823 Predicted E3 ubiquitin 99.0 1.1E-10 2.4E-15 100.5 2.4 48 146-193 45-95 (230)
13 smart00504 Ubox Modified RING 99.0 5.2E-10 1.1E-14 77.8 3.3 45 149-193 2-46 (63)
14 KOG0320 Predicted E3 ubiquitin 98.9 5.8E-10 1.3E-14 92.5 2.4 48 146-193 129-178 (187)
15 TIGR00599 rad18 DNA repair pro 98.9 8E-10 1.7E-14 103.2 3.3 51 144-194 22-72 (397)
16 PF00097 zf-C3HC4: Zinc finger 98.9 1.1E-09 2.4E-14 70.0 2.7 38 151-188 1-41 (41)
17 KOG4628 Predicted E3 ubiquitin 98.9 1.6E-09 3.4E-14 99.2 3.5 46 149-194 230-279 (348)
18 cd00162 RING RING-finger (Real 98.8 1.6E-09 3.5E-14 69.2 2.5 43 150-192 1-45 (45)
19 KOG0287 Postreplication repair 98.8 9.6E-10 2.1E-14 99.2 0.3 49 146-194 21-69 (442)
20 PF12861 zf-Apc11: Anaphase-pr 98.7 4.9E-09 1.1E-13 77.5 2.6 48 146-193 19-82 (85)
21 COG5432 RAD18 RING-finger-cont 98.7 3.9E-09 8.5E-14 93.6 1.9 49 146-194 23-71 (391)
22 smart00184 RING Ring finger. E 98.7 7.4E-09 1.6E-13 63.8 2.5 38 151-188 1-39 (39)
23 PF14634 zf-RING_5: zinc-RING 98.7 6.6E-09 1.4E-13 67.8 2.3 41 150-190 1-44 (44)
24 KOG2164 Predicted E3 ubiquitin 98.7 7E-09 1.5E-13 98.1 2.6 47 148-194 186-237 (513)
25 COG5540 RING-finger-containing 98.6 1.2E-08 2.6E-13 91.0 2.3 47 147-193 322-372 (374)
26 COG5574 PEX10 RING-finger-cont 98.6 2E-08 4.4E-13 88.1 2.3 48 146-193 213-262 (271)
27 KOG4172 Predicted E3 ubiquitin 98.6 1.3E-08 2.8E-13 68.6 0.4 49 147-195 6-56 (62)
28 PF04564 U-box: U-box domain; 98.6 3.7E-08 8.1E-13 71.1 2.5 47 147-193 3-50 (73)
29 KOG0802 E3 ubiquitin ligase [P 98.5 3.6E-08 7.8E-13 96.2 2.0 47 146-192 289-340 (543)
30 PF13445 zf-RING_UBOX: RING-ty 98.5 4.6E-08 1E-12 63.6 1.6 35 151-186 1-43 (43)
31 KOG2177 Predicted E3 ubiquitin 98.3 1.9E-07 4E-12 81.4 1.5 46 145-190 10-55 (386)
32 TIGR00570 cdk7 CDK-activating 98.2 1.5E-06 3.3E-11 78.6 4.4 48 148-195 3-56 (309)
33 KOG1002 Nucleotide excision re 98.2 8.8E-07 1.9E-11 84.3 2.3 101 79-193 481-586 (791)
34 PF14835 zf-RING_6: zf-RING of 98.1 5.1E-07 1.1E-11 63.1 -0.1 46 146-193 5-51 (65)
35 COG5194 APC11 Component of SCF 98.1 1.5E-06 3.3E-11 63.1 1.9 30 164-193 52-81 (88)
36 KOG4265 Predicted E3 ubiquitin 98.1 1.6E-06 3.4E-11 79.2 2.3 49 146-194 288-337 (349)
37 KOG0828 Predicted E3 ubiquitin 98.0 2.3E-06 5E-11 80.9 1.7 49 145-193 568-634 (636)
38 KOG4159 Predicted E3 ubiquitin 98.0 3.6E-06 7.8E-11 79.0 2.5 51 144-194 80-130 (398)
39 KOG0978 E3 ubiquitin ligase in 98.0 2.3E-06 5.1E-11 84.6 1.3 47 147-193 642-689 (698)
40 KOG0824 Predicted E3 ubiquitin 97.9 3.9E-06 8.4E-11 75.1 1.8 48 147-194 6-54 (324)
41 KOG1785 Tyrosine kinase negati 97.9 2.9E-06 6.2E-11 78.5 1.0 48 147-194 368-417 (563)
42 KOG1493 Anaphase-promoting com 97.9 2.7E-06 5.8E-11 61.3 0.1 46 148-193 20-81 (84)
43 COG5219 Uncharacterized conser 97.8 7.9E-06 1.7E-10 82.3 1.6 51 144-194 1465-1524(1525)
44 PF11793 FANCL_C: FANCL C-term 97.8 5.1E-06 1.1E-10 59.6 0.2 46 148-193 2-66 (70)
45 KOG1734 Predicted RING-contain 97.7 8.9E-06 1.9E-10 71.8 0.7 46 147-192 223-280 (328)
46 COG5152 Uncharacterized conser 97.6 2.4E-05 5.3E-10 66.3 1.8 52 148-203 196-247 (259)
47 KOG0311 Predicted E3 ubiquitin 97.6 8.2E-06 1.8E-10 74.5 -1.8 48 146-193 41-90 (381)
48 PHA03096 p28-like protein; Pro 97.5 7.4E-05 1.6E-09 67.4 3.4 57 149-205 179-259 (284)
49 KOG0297 TNF receptor-associate 97.5 4.7E-05 1E-09 71.7 1.8 49 145-193 18-67 (391)
50 KOG2879 Predicted E3 ubiquitin 97.5 0.00028 6.1E-09 62.6 6.2 54 140-193 231-287 (298)
51 smart00744 RINGv The RING-vari 97.4 8E-05 1.7E-09 49.7 2.0 40 150-189 1-49 (49)
52 KOG4692 Predicted E3 ubiquitin 97.4 0.00017 3.7E-09 66.0 4.5 49 146-194 420-468 (489)
53 KOG0804 Cytoplasmic Zn-finger 97.4 6.5E-05 1.4E-09 70.5 1.4 46 146-193 173-222 (493)
54 KOG1813 Predicted E3 ubiquitin 97.4 6.8E-05 1.5E-09 67.1 1.3 46 148-193 241-286 (313)
55 KOG2930 SCF ubiquitin ligase, 97.3 8.4E-05 1.8E-09 56.6 1.3 29 164-192 79-107 (114)
56 PF11789 zf-Nse: Zinc-finger o 97.2 0.00022 4.9E-09 49.0 1.8 41 147-187 10-53 (57)
57 KOG4275 Predicted E3 ubiquitin 97.1 0.00013 2.8E-09 65.2 0.5 44 148-195 300-344 (350)
58 KOG2660 Locus-specific chromos 97.0 0.00033 7.1E-09 63.6 2.0 86 146-231 13-102 (331)
59 KOG0827 Predicted E3 ubiquitin 97.0 0.00036 7.8E-09 64.6 1.9 41 149-189 5-52 (465)
60 KOG0825 PHD Zn-finger protein 96.9 0.0002 4.3E-09 71.3 -0.1 52 147-198 122-176 (1134)
61 KOG1571 Predicted E3 ubiquitin 96.7 0.0011 2.4E-08 60.9 2.9 46 146-194 303-348 (355)
62 KOG1645 RING-finger-containing 96.7 0.00094 2E-08 62.3 2.1 44 148-191 4-54 (463)
63 KOG1001 Helicase-like transcri 96.6 0.0011 2.3E-08 66.5 2.4 44 149-193 455-500 (674)
64 KOG4739 Uncharacterized protei 96.5 0.0011 2.3E-08 58.0 1.5 44 150-195 5-50 (233)
65 KOG1941 Acetylcholine receptor 96.3 0.0018 3.8E-08 60.3 1.4 53 141-193 358-416 (518)
66 PF14447 Prok-RING_4: Prokaryo 96.2 0.0019 4.2E-08 43.9 1.1 46 147-194 6-51 (55)
67 COG5236 Uncharacterized conser 96.2 0.0031 6.7E-08 57.9 2.6 51 143-193 56-108 (493)
68 PF10367 Vps39_2: Vacuolar sor 96.1 0.0071 1.5E-07 45.8 4.0 36 141-176 71-108 (109)
69 KOG2114 Vacuolar assembly/sort 96.0 0.0042 9E-08 62.7 2.7 68 123-193 811-883 (933)
70 KOG1814 Predicted E3 ubiquitin 95.9 0.0078 1.7E-07 56.4 3.6 44 147-190 183-237 (445)
71 KOG4185 Predicted E3 ubiquitin 95.9 0.0048 1E-07 55.6 2.3 44 149-192 4-54 (296)
72 PF14570 zf-RING_4: RING/Ubox 95.7 0.01 2.2E-07 39.3 2.7 42 151-192 1-47 (48)
73 KOG1428 Inhibitor of type V ad 95.6 0.0068 1.5E-07 64.2 2.2 51 145-195 3483-3546(3738)
74 KOG4445 Uncharacterized conser 95.4 0.029 6.2E-07 50.7 5.3 47 147-193 114-186 (368)
75 PF04641 Rtf2: Rtf2 RING-finge 95.2 0.018 4E-07 51.3 3.3 48 145-193 110-161 (260)
76 KOG3268 Predicted E3 ubiquitin 95.0 0.015 3.2E-07 48.9 2.2 48 148-195 165-230 (234)
77 KOG3002 Zn finger protein [Gen 94.8 0.014 3.1E-07 53.0 1.7 44 146-193 46-91 (299)
78 COG5222 Uncharacterized conser 94.7 0.015 3.2E-07 52.6 1.5 42 149-190 275-318 (427)
79 KOG3039 Uncharacterized conser 94.4 0.026 5.6E-07 49.7 2.3 47 147-193 220-270 (303)
80 KOG2932 E3 ubiquitin ligase in 94.4 0.015 3.3E-07 52.7 0.8 46 148-195 90-136 (389)
81 PF10272 Tmpp129: Putative tra 94.1 0.047 1E-06 50.8 3.4 28 166-193 311-351 (358)
82 PHA02825 LAP/PHD finger-like p 93.9 0.063 1.4E-06 44.3 3.4 47 146-193 6-59 (162)
83 KOG4367 Predicted Zn-finger pr 93.8 0.029 6.2E-07 53.1 1.4 36 146-181 2-37 (699)
84 KOG0826 Predicted E3 ubiquitin 93.7 0.04 8.6E-07 50.3 2.0 46 147-192 299-345 (357)
85 KOG1952 Transcription factor N 93.3 0.041 8.9E-07 55.8 1.7 49 147-195 190-249 (950)
86 PHA02862 5L protein; Provision 93.2 0.075 1.6E-06 43.2 2.7 44 149-193 3-53 (156)
87 KOG3800 Predicted E3 ubiquitin 92.9 0.087 1.9E-06 47.4 3.0 44 150-193 2-51 (300)
88 PF08746 zf-RING-like: RING-li 92.9 0.095 2.1E-06 33.8 2.4 38 151-188 1-43 (43)
89 PF05290 Baculo_IE-1: Baculovi 92.7 0.074 1.6E-06 42.6 2.1 48 147-194 79-133 (140)
90 PF03854 zf-P11: P-11 zinc fin 92.2 0.072 1.6E-06 35.1 1.1 41 151-193 5-46 (50)
91 PF05883 Baculo_RING: Baculovi 92.1 0.057 1.2E-06 43.4 0.7 35 148-182 26-69 (134)
92 PF07800 DUF1644: Protein of u 91.7 0.14 2.9E-06 42.3 2.5 33 148-180 2-47 (162)
93 KOG0298 DEAD box-containing he 91.6 0.042 9.1E-07 58.0 -0.7 45 146-190 1151-1196(1394)
94 KOG1100 Predicted E3 ubiquitin 91.4 0.063 1.4E-06 46.4 0.3 40 150-193 160-200 (207)
95 COG5175 MOT2 Transcriptional r 91.0 0.17 3.6E-06 46.7 2.6 46 148-193 14-64 (480)
96 KOG2034 Vacuolar sorting prote 90.7 0.32 6.9E-06 49.8 4.5 35 145-179 814-850 (911)
97 KOG3970 Predicted E3 ubiquitin 90.3 0.18 3.9E-06 43.9 2.1 48 146-193 48-105 (299)
98 PF12906 RINGv: RING-variant d 88.8 0.26 5.7E-06 32.3 1.5 38 151-188 1-47 (47)
99 KOG2817 Predicted E3 ubiquitin 88.5 0.29 6.3E-06 45.8 2.1 44 147-190 333-382 (394)
100 KOG4362 Transcriptional regula 88.4 0.12 2.6E-06 51.7 -0.5 47 147-193 20-69 (684)
101 PF14569 zf-UDP: Zinc-binding 88.3 0.59 1.3E-05 34.1 3.1 50 147-196 8-65 (80)
102 KOG1940 Zn-finger protein [Gen 87.4 0.31 6.8E-06 43.9 1.6 43 148-190 158-204 (276)
103 KOG0309 Conserved WD40 repeat- 87.1 0.34 7.4E-06 48.9 1.8 26 162-187 1044-1069(1081)
104 COG5220 TFB3 Cdk activating ki 86.3 0.21 4.6E-06 43.9 -0.1 47 147-193 9-64 (314)
105 COG5183 SSM4 Protein involved 85.8 0.66 1.4E-05 47.3 3.0 49 146-194 10-67 (1175)
106 PLN02638 cellulose synthase A 84.4 0.86 1.9E-05 47.9 3.3 58 147-205 16-81 (1079)
107 KOG1815 Predicted E3 ubiquitin 83.7 0.68 1.5E-05 44.4 2.1 36 146-181 68-104 (444)
108 KOG1812 Predicted E3 ubiquitin 82.9 1.6 3.6E-05 41.1 4.3 34 147-180 145-182 (384)
109 PLN02189 cellulose synthase 81.9 1.2 2.7E-05 46.6 3.2 58 147-205 33-98 (1040)
110 KOG3039 Uncharacterized conser 81.3 1.4 3E-05 39.1 2.9 35 146-180 41-75 (303)
111 PF02891 zf-MIZ: MIZ/SP-RING z 81.3 1.4 3.1E-05 29.2 2.3 42 149-191 3-50 (50)
112 KOG3899 Uncharacterized conser 80.6 0.78 1.7E-05 41.6 1.1 28 166-193 325-365 (381)
113 PLN02400 cellulose synthase 79.9 1.4 2.9E-05 46.6 2.7 58 147-205 35-100 (1085)
114 KOG3161 Predicted E3 ubiquitin 79.2 0.67 1.4E-05 46.1 0.3 38 147-186 10-51 (861)
115 PLN02915 cellulose synthase A 79.0 1.7 3.8E-05 45.6 3.2 58 147-205 14-79 (1044)
116 PLN02436 cellulose synthase A 78.6 1.8 4E-05 45.6 3.2 57 147-204 35-99 (1094)
117 KOG0825 PHD Zn-finger protein 78.6 1.3 2.8E-05 45.1 2.0 46 148-193 96-154 (1134)
118 KOG3053 Uncharacterized conser 77.8 1.2 2.6E-05 39.6 1.4 54 145-198 17-87 (293)
119 PF06937 EURL: EURL protein; 74.4 5 0.00011 36.0 4.3 18 171-188 58-76 (285)
120 KOG3113 Uncharacterized conser 74.2 3 6.5E-05 37.1 2.9 61 147-212 110-174 (293)
121 KOG0827 Predicted E3 ubiquitin 74.0 0.48 1E-05 44.4 -2.2 47 147-193 195-245 (465)
122 KOG3579 Predicted E3 ubiquitin 73.4 1.4 2.9E-05 39.9 0.6 36 147-182 267-306 (352)
123 KOG3799 Rab3 effector RIM1 and 72.4 2.2 4.7E-05 34.5 1.5 59 143-205 60-130 (169)
124 KOG1812 Predicted E3 ubiquitin 71.7 1.5 3.3E-05 41.3 0.5 40 148-188 306-351 (384)
125 KOG2113 Predicted RNA binding 68.6 3.2 6.9E-05 38.1 1.9 51 140-192 335-386 (394)
126 KOG4718 Non-SMC (structural ma 67.8 2.7 5.9E-05 36.4 1.2 44 147-190 180-224 (235)
127 KOG3842 Adaptor protein Pellin 67.5 4.6 0.0001 37.1 2.6 47 147-193 340-414 (429)
128 PF04216 FdhE: Protein involve 65.2 1.1 2.4E-05 40.4 -1.8 44 147-190 171-219 (290)
129 KOG2068 MOT2 transcription fac 64.5 4.6 0.0001 37.2 2.1 45 149-193 250-298 (327)
130 COG2835 Uncharacterized conser 62.8 1.6 3.5E-05 30.2 -0.9 43 183-239 9-51 (60)
131 PF10571 UPF0547: Uncharacteri 62.1 4.9 0.00011 23.0 1.2 21 150-170 2-24 (26)
132 KOG0269 WD40 repeat-containing 62.1 5.6 0.00012 40.4 2.4 42 149-190 780-825 (839)
133 PF07191 zinc-ribbons_6: zinc- 60.3 1.1 2.5E-05 32.0 -2.0 43 149-196 2-44 (70)
134 TIGR01562 FdhE formate dehydro 58.4 2.4 5.3E-05 38.8 -0.8 44 148-191 184-233 (305)
135 PF04710 Pellino: Pellino; In 58.2 3.3 7.1E-05 39.1 0.0 46 148-193 328-401 (416)
136 PF02318 FYVE_2: FYVE-type zin 57.3 13 0.00028 28.9 3.2 45 147-192 53-104 (118)
137 PRK03564 formate dehydrogenase 56.6 3.2 6.9E-05 38.1 -0.4 44 147-190 186-234 (309)
138 PF06844 DUF1244: Protein of u 56.5 6.6 0.00014 27.7 1.3 12 169-180 11-22 (68)
139 COG5109 Uncharacterized conser 56.4 7.1 0.00015 35.9 1.8 43 148-190 336-384 (396)
140 TIGR00622 ssl1 transcription f 55.0 10 0.00022 29.6 2.3 41 149-189 56-110 (112)
141 PF07975 C1_4: TFIIH C1-like d 53.7 9.1 0.0002 25.7 1.6 28 162-189 23-50 (51)
142 KOG2231 Predicted E3 ubiquitin 51.6 11 0.00024 38.0 2.5 44 150-193 2-52 (669)
143 PF10497 zf-4CXXC_R1: Zinc-fin 51.4 12 0.00027 28.7 2.2 44 147-190 6-69 (105)
144 KOG0824 Predicted E3 ubiquitin 51.4 5.2 0.00011 36.5 0.1 49 147-195 104-153 (324)
145 KOG1609 Protein involved in mR 50.5 12 0.00026 33.4 2.4 46 148-193 78-134 (323)
146 PRK04023 DNA polymerase II lar 48.8 12 0.00027 39.4 2.4 45 147-193 625-674 (1121)
147 PF04710 Pellino: Pellino; In 48.1 6 0.00013 37.4 0.0 29 162-193 305-339 (416)
148 smart00647 IBR In Between Ring 47.3 3.5 7.5E-05 27.8 -1.3 19 162-180 42-60 (64)
149 KOG4185 Predicted E3 ubiquitin 45.8 3.7 8.1E-05 36.8 -1.7 44 148-191 207-265 (296)
150 KOG0802 E3 ubiquitin ligase [P 44.8 11 0.00023 37.2 1.2 44 146-193 477-520 (543)
151 KOG0801 Predicted E3 ubiquitin 44.3 7.8 0.00017 32.3 0.1 26 147-172 176-204 (205)
152 PF01363 FYVE: FYVE zinc finge 43.7 8 0.00017 26.8 0.1 32 147-178 8-43 (69)
153 PLN02195 cellulose synthase A 43.2 18 0.00039 38.1 2.5 47 147-193 5-59 (977)
154 PF09723 Zn-ribbon_8: Zinc rib 41.6 5.1 0.00011 25.5 -1.1 31 164-195 9-40 (42)
155 KOG1829 Uncharacterized conser 41.3 8.8 0.00019 38.1 -0.0 41 147-190 510-558 (580)
156 PF04423 Rad50_zn_hook: Rad50 41.2 13 0.00027 24.7 0.8 11 183-193 21-31 (54)
157 PF13901 DUF4206: Domain of un 41.1 16 0.00036 31.2 1.6 39 147-190 151-197 (202)
158 KOG2066 Vacuolar assembly/sort 41.1 8.5 0.00018 39.4 -0.2 42 146-188 782-830 (846)
159 KOG1356 Putative transcription 40.4 9.7 0.00021 39.2 0.1 44 148-191 229-280 (889)
160 PF14446 Prok-RING_1: Prokaryo 40.2 25 0.00055 23.8 2.1 36 148-187 5-44 (54)
161 smart00064 FYVE Protein presen 39.7 24 0.00052 24.2 2.1 32 148-179 10-45 (68)
162 PF05605 zf-Di19: Drought indu 39.3 17 0.00036 24.1 1.1 36 148-190 2-39 (54)
163 cd00065 FYVE FYVE domain; Zinc 38.9 23 0.0005 23.3 1.8 31 149-179 3-37 (57)
164 KOG2807 RNA polymerase II tran 38.5 20 0.00044 33.1 1.9 43 147-189 329-374 (378)
165 KOG0241 Kinesin-like protein [ 38.4 25 0.00055 37.2 2.7 38 9-49 653-697 (1714)
166 COG4647 AcxC Acetone carboxyla 38.3 14 0.0003 29.8 0.6 23 151-173 60-82 (165)
167 PF10146 zf-C4H2: Zinc finger- 35.7 27 0.00058 30.7 2.1 25 170-194 196-220 (230)
168 PF13240 zinc_ribbon_2: zinc-r 35.3 6.8 0.00015 21.7 -1.1 9 182-190 13-21 (23)
169 KOG4451 Uncharacterized conser 35.3 25 0.00055 30.9 1.9 24 171-194 252-275 (286)
170 PF11023 DUF2614: Protein of u 32.8 25 0.00055 27.4 1.3 25 163-193 72-96 (114)
171 smart00132 LIM Zinc-binding do 32.0 25 0.00055 20.5 1.0 34 151-192 2-37 (39)
172 COG3492 Uncharacterized protei 29.2 26 0.00056 26.4 0.8 13 169-181 42-54 (104)
173 PF06906 DUF1272: Protein of u 29.0 42 0.00091 23.0 1.7 24 168-193 29-52 (57)
174 COG0068 HypF Hydrogenase matur 27.7 28 0.00061 35.5 1.0 47 147-193 100-184 (750)
175 COG3058 FdhE Uncharacterized p 27.1 4.1E+02 0.0089 24.3 8.1 88 146-237 183-277 (308)
176 COG3813 Uncharacterized protei 27.0 37 0.00081 24.5 1.3 26 166-193 27-52 (84)
177 KOG1814 Predicted E3 ubiquitin 26.5 49 0.0011 31.6 2.3 34 146-179 366-405 (445)
178 PRK11827 hypothetical protein; 25.6 8.4 0.00018 26.7 -2.2 47 178-238 4-50 (60)
179 PRK14714 DNA polymerase II lar 25.3 33 0.00071 37.2 1.0 46 148-193 667-720 (1337)
180 PF01485 IBR: IBR domain; Int 24.0 8.6 0.00019 25.7 -2.4 19 162-180 42-60 (64)
181 PF14311 DUF4379: Domain of un 23.3 42 0.00091 22.2 1.0 9 180-188 47-55 (55)
182 KOG3726 Uncharacterized conser 23.2 42 0.00091 34.0 1.3 38 149-189 655-696 (717)
183 KOG2113 Predicted RNA binding 23.0 22 0.00047 32.8 -0.7 47 147-193 135-183 (394)
184 PRK11595 DNA utilization prote 22.7 61 0.0013 28.0 2.1 22 170-191 22-43 (227)
185 smart00290 ZnF_UBP Ubiquitin C 22.3 53 0.0011 20.9 1.3 23 151-173 2-24 (50)
186 KOG1815 Predicted E3 ubiquitin 21.8 31 0.00067 33.1 0.1 20 160-179 178-197 (444)
187 PF02370 M: M protein repeat; 21.8 97 0.0021 16.9 2.0 14 13-26 2-15 (21)
188 smart00834 CxxC_CXXC_SSSS Puta 20.6 24 0.00053 21.5 -0.6 13 182-194 26-38 (41)
189 PTZ00303 phosphatidylinositol 20.6 61 0.0013 33.7 1.8 31 149-179 461-500 (1374)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-19 Score=165.99 Aligned_cols=220 Identities=28% Similarity=0.393 Sum_probs=168.6
Q ss_pred HHHHHHHHhhhhcCCCCCCCceeEeeeeecch-hHHHHHHHhhcchhhhhhccceeeeEEEEe-ecCccccchhhh--hc
Q 025880 18 EADIQHANTLASDFPREYDGACLQMRMSYSPA-AHLFLFLVQWTDCHLAGALGLLRILIYKVY-VDGTTTMSTHER--KA 93 (247)
Q Consensus 18 ~~di~~an~la~~~~~~~~g~~~qmrl~~s~~-a~~~~~l~~~~~~~la~~lgll~iliy~v~-~dg~~~~s~~~r--~~ 93 (247)
+.+++++ ++...+|+++.+..-+||++++.. .++..+++.|+++..+. .|+.+++++..+ .++..+++...| ..
T Consensus 2 d~~~~~~-tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~~~~ 79 (344)
T KOG1039|consen 2 DLSLSQE-TICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAS-TGLSQSLIWANAVADASATMSVSSRPVLT 79 (344)
T ss_pred ccccccc-hhhhhcccccccccceeeeeccCchhhccccccccccccccc-cccchhhcccchhhccccccchhcccchh
Confidence 4577888 999999999999999999999999 88888999999988777 788999999998 788888888776 78
Q ss_pred hHHHHHHhHhHH---------HHHhhhcCCChHHH----------HHHHHHHHHHhhhchh--------hhhhccccccc
Q 025880 94 SIREFYAIIYPS---------LLQLQRGVTDTEDK----------KQKAVYMERYRRRDDE--------EQRQYTDADIE 146 (247)
Q Consensus 94 si~~fy~~i~~s---------L~qL~~~~~~~~~~----------~~~~~~~e~~~~~~~~--------~~~~~~~~~~~ 146 (247)
.+++++++.+++ +.+.+.+....... .+...+...+...+.. ..+.....+..
T Consensus 80 ~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~s 159 (344)
T KOG1039|consen 80 AIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQKS 159 (344)
T ss_pred hhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCcc
Confidence 899999998887 33333333322211 1112222222222211 12222333335
Q ss_pred cCCccccccccCCcc--------cccCcCCcccHHHHHHHh--hc-----CCcccccccccccccCCCcccccCcccccc
Q 025880 147 REEECGICMETNSKI--------VLPNCNHAMCLKCYREWR--IR-----SQSCPFCRDSLKRVNSGDLWVYMDSRDIID 211 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~--------v~~~CgH~FC~~Ci~~w~--~~-----~~~CP~CR~~l~~~~~~~~~v~~~~~~~vd 211 (247)
.+.+|+||+|..... ++++|.|.||.+||+.|. .+ ++.||+||.+...+++...|+.+...+..+
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~l 239 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQKL 239 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeeccccccc
Confidence 689999999986653 458999999999999999 34 479999999999999999999999988888
Q ss_pred chhhchHHHHHHHHHHhhCCCCCCCCcc
Q 025880 212 SATVTRENLRRLFLYIDKLPLIIPDNLF 239 (247)
Q Consensus 212 ~~~~~~en~~rlf~~i~~lP~~~p~~~~ 239 (247)
+.+..+++.++...|+...+..-|..-.
T Consensus 240 i~e~~~~~s~~~c~yf~~~~g~cPf~s~ 267 (344)
T KOG1039|consen 240 IEEYEAEMSAKDCKYFSQGLGSCPFGSK 267 (344)
T ss_pred HHHHHHHhhccchhhhcCCCCCCCCCCc
Confidence 9888899999999999998888886443
No 2
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.27 E-value=2e-12 Score=113.11 Aligned_cols=56 Identities=34% Similarity=0.921 Sum_probs=47.6
Q ss_pred ccCCccccccccCCc--------ccccCcCCcccHHHHHHHhhcCCcccccccccccccCCCcc
Q 025880 146 EREEECGICMETNSK--------IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLW 201 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~--------~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~ 201 (247)
..+.+|+||++.+.+ +++++|||.||..||.+|+..+.+||+||.++..+.+...|
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 456899999997654 36779999999999999999999999999999877766544
No 3
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.23 E-value=2.5e-12 Score=83.91 Aligned_cols=41 Identities=44% Similarity=1.028 Sum_probs=35.2
Q ss_pred CccccccccCC---cccccCcCCcccHHHHHHHhhcCCcccccc
Q 025880 149 EECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCR 189 (247)
Q Consensus 149 ~~C~IC~e~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 189 (247)
++|+||++.+. .++.++|||.||.+|+.+|+.++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 36999999874 467778999999999999999999999997
No 4
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.20 E-value=7.4e-12 Score=83.88 Aligned_cols=47 Identities=36% Similarity=0.913 Sum_probs=42.1
Q ss_pred CCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCccccccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
+..|.||++....++..||||. ||..|+.+|+.....||+||++++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4679999999999999999999 9999999999999999999998874
No 5
>PHA02926 zinc finger-like protein; Provisional
Probab=99.19 E-value=8.9e-12 Score=106.70 Aligned_cols=56 Identities=32% Similarity=0.901 Sum_probs=45.8
Q ss_pred ccCCccccccccCC---------cccccCcCCcccHHHHHHHhhcC------CcccccccccccccCCCcc
Q 025880 146 EREEECGICMETNS---------KIVLPNCNHAMCLKCYREWRIRS------QSCPFCRDSLKRVNSGDLW 201 (247)
Q Consensus 146 ~~~~~C~IC~e~~~---------~~v~~~CgH~FC~~Ci~~w~~~~------~~CP~CR~~l~~~~~~~~~ 201 (247)
+.+.+|+||+|... .+++++|+|.||..||..|.... .+||+||..+..+.++..+
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 46789999999752 25788999999999999999742 4699999999987776543
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.18 E-value=1.1e-11 Score=104.64 Aligned_cols=53 Identities=25% Similarity=0.756 Sum_probs=45.0
Q ss_pred ccccccCCccccccccCCcccccCcCCcccHHHHHHHhhc----------------CCccccccccccc
Q 025880 142 DADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----------------SQSCPFCRDSLKR 194 (247)
Q Consensus 142 ~~~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----------------~~~CP~CR~~l~~ 194 (247)
..+..++.+|+||++.+.+|+.++|||.||..||.+|+.. ...||.||..++.
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3344567899999999999999999999999999999742 2589999998863
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.09 E-value=5.1e-11 Score=77.18 Aligned_cols=38 Identities=32% Similarity=0.768 Sum_probs=30.6
Q ss_pred cccccccCCcccccCcCCcccHHHHHHHhhcC----Cccccc
Q 025880 151 CGICMETNSKIVLPNCNHAMCLKCYREWRIRS----QSCPFC 188 (247)
Q Consensus 151 C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~----~~CP~C 188 (247)
|+||++.+.+|+.++|||+||..||.+|+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998753 379987
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.6e-11 Score=105.14 Aligned_cols=48 Identities=31% Similarity=0.912 Sum_probs=44.9
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+....|.+|+|....|..+||||.||..||..|......||+||..++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCC
Confidence 456899999999999999999999999999999999999999999876
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.07 E-value=6.8e-11 Score=75.19 Aligned_cols=38 Identities=29% Similarity=0.937 Sum_probs=34.0
Q ss_pred cccccccCCcc-cccCcCCcccHHHHHHHhhcCCccccc
Q 025880 151 CGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFC 188 (247)
Q Consensus 151 C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~C 188 (247)
|+||++.+.++ +.++|||.||..|+.+|++.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999998 689999999999999999998999988
No 10
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.04 E-value=1.2e-10 Score=84.34 Aligned_cols=42 Identities=33% Similarity=0.966 Sum_probs=34.9
Q ss_pred CCccccccccCCc-------------ccccCcCCcccHHHHHHHhhcCCcccccc
Q 025880 148 EEECGICMETNSK-------------IVLPNCNHAMCLKCYREWRIRSQSCPFCR 189 (247)
Q Consensus 148 ~~~C~IC~e~~~~-------------~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 189 (247)
+..|+||++.+.+ .+..+|||.||..||.+|+..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4459999998732 35568999999999999999999999997
No 11
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.6e-10 Score=102.30 Aligned_cols=49 Identities=31% Similarity=0.776 Sum_probs=42.2
Q ss_pred ccCCccccccccC-C------------cccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETN-S------------KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~-~------------~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
.++..|.|||+.. . .|..+||||.+|.+|++.|++++++||+||.++-.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 4678999999873 2 35788999999999999999999999999998543
No 12
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-10 Score=100.46 Aligned_cols=48 Identities=27% Similarity=0.789 Sum_probs=43.7
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhc---CCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~~l~ 193 (247)
....+|.||++...+||++.|||.||..||.+|+.. ++.||+|+..++
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence 467899999999999999999999999999999974 578999999876
No 13
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.95 E-value=5.2e-10 Score=77.84 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=42.3
Q ss_pred CccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 149 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
..|+||.+.+.+|+.++|||.||..||.+|+..+..||.|+.+++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 579999999999999999999999999999988889999998875
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.8e-10 Score=92.48 Aligned_cols=48 Identities=29% Similarity=0.779 Sum_probs=42.1
Q ss_pred ccCCccccccccCCc--ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~--~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+....|+|||+.+.+ ++-++|||.||..||+..+.....||+|++.++
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 345789999998876 467899999999999999999999999998665
No 15
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=8e-10 Score=103.22 Aligned_cols=51 Identities=27% Similarity=0.673 Sum_probs=46.3
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
+.+....|+||.+.+..|++++|||.||..||..|+.....||.||..+..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 456778999999999999999999999999999999988899999998763
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.88 E-value=1.1e-09 Score=70.02 Aligned_cols=38 Identities=42% Similarity=1.057 Sum_probs=35.0
Q ss_pred cccccccCCccc-ccCcCCcccHHHHHHHhh--cCCccccc
Q 025880 151 CGICMETNSKIV-LPNCNHAMCLKCYREWRI--RSQSCPFC 188 (247)
Q Consensus 151 C~IC~e~~~~~v-~~~CgH~FC~~Ci~~w~~--~~~~CP~C 188 (247)
|+||++.+..+. .++|||.||..|+.+|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999988 899999999999999998 56799987
No 17
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.6e-09 Score=99.24 Aligned_cols=46 Identities=26% Similarity=0.819 Sum_probs=39.9
Q ss_pred CccccccccCCcc---cccCcCCcccHHHHHHHhhcC-Cccccccccccc
Q 025880 149 EECGICMETNSKI---VLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLKR 194 (247)
Q Consensus 149 ~~C~IC~e~~~~~---v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~l~~ 194 (247)
..|+||+|.+.++ +.+||+|.||..||.+|+.+. ..||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 4999999998864 668999999999999999876 569999997753
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.85 E-value=1.6e-09 Score=69.23 Aligned_cols=43 Identities=37% Similarity=0.991 Sum_probs=36.1
Q ss_pred ccccccccCCcc-cccCcCCcccHHHHHHHhhc-CCccccccccc
Q 025880 150 ECGICMETNSKI-VLPNCNHAMCLKCYREWRIR-SQSCPFCRDSL 192 (247)
Q Consensus 150 ~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l 192 (247)
+|+||++.+..+ ..++|||.||..|+..|+.. +..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998555 44559999999999999987 77899998753
No 19
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.80 E-value=9.6e-10 Score=99.19 Aligned_cols=49 Identities=27% Similarity=0.683 Sum_probs=45.3
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
..-..|.||.|.+..|+++||+|.||.-||+..+..+..||.|+.+++.
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 3457899999999999999999999999999999999999999998873
No 20
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.75 E-value=4.9e-09 Score=77.48 Aligned_cols=48 Identities=29% Similarity=0.808 Sum_probs=38.9
Q ss_pred ccCCccccccccCCc-------------ccccCcCCcccHHHHHHHhhc---CCcccccccccc
Q 025880 146 EREEECGICMETNSK-------------IVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~-------------~v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~~l~ 193 (247)
..++.|+||...+.. .+.-.|+|.||..||.+|+.+ ++.||+||++..
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 347889999977651 245579999999999999975 479999999875
No 21
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.73 E-value=3.9e-09 Score=93.57 Aligned_cols=49 Identities=27% Similarity=0.525 Sum_probs=45.1
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
.....|-||-+.+..|++++|||.||.-||+..+..+..||.||.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 3456899999999999999999999999999999999999999998763
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.72 E-value=7.4e-09 Score=63.83 Aligned_cols=38 Identities=37% Similarity=1.038 Sum_probs=34.6
Q ss_pred cccccccCCcccccCcCCcccHHHHHHHhh-cCCccccc
Q 025880 151 CGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFC 188 (247)
Q Consensus 151 C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~C 188 (247)
|+||++....++.++|||.||..|+..|+. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 789999988888999999999999999998 56789987
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.72 E-value=6.6e-09 Score=67.77 Aligned_cols=41 Identities=37% Similarity=0.962 Sum_probs=35.9
Q ss_pred ccccccccC---CcccccCcCCcccHHHHHHHhhcCCccccccc
Q 025880 150 ECGICMETN---SKIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 150 ~C~IC~e~~---~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
.|+||.+.+ ..+.+++|||.||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999988 24788999999999999998877789999984
No 24
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7e-09 Score=98.13 Aligned_cols=47 Identities=36% Similarity=0.786 Sum_probs=42.4
Q ss_pred CCccccccccCCcccccCcCCcccHHHHHHHhhcC-----Cccccccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-----QSCPFCRDSLKR 194 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~-----~~CP~CR~~l~~ 194 (247)
+..|+||++....++.+.|||.||..||.+++..+ ..||+||..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 78999999999999999999999999999887654 599999998874
No 25
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-08 Score=90.97 Aligned_cols=47 Identities=32% Similarity=0.850 Sum_probs=40.9
Q ss_pred cCCccccccccCCc---ccccCcCCcccHHHHHHHhh-cCCcccccccccc
Q 025880 147 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~l~ 193 (247)
...+|+|||+.+.+ .+.+||.|.||..|+.+|+. .+..||+||.++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 45789999998875 36778999999999999997 6889999998764
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2e-08 Score=88.08 Aligned_cols=48 Identities=27% Similarity=0.722 Sum_probs=42.6
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHH-HhhcCC-cccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYRE-WRIRSQ-SCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~-w~~~~~-~CP~CR~~l~ 193 (247)
+.+..|.||++....|..++|||.||..||.. |-.++. -||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 46788999999999999999999999999998 887665 5999998654
No 27
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.3e-08 Score=68.57 Aligned_cols=49 Identities=37% Similarity=0.788 Sum_probs=42.1
Q ss_pred cCCccccccccCCcccccCcCCc-ccHHHHHHHhh-cCCcccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHA-MCLKCYREWRI-RSQSCPFCRDSLKRV 195 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~-~~~~CP~CR~~l~~~ 195 (247)
.+.+|.||+|...+.++..|||. +|..|-.+.+. .+..||+||++++.+
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV 56 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence 44789999999999999999999 89999876554 788999999999854
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.56 E-value=3.7e-08 Score=71.13 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=39.4
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhc-CCcccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~ 193 (247)
+++.|+|+.+.+.+|+++++||.|+..||..|+.. ...||+|+.+++
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 46789999999999999999999999999999998 889999998887
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.6e-08 Score=96.22 Aligned_cols=47 Identities=36% Similarity=0.709 Sum_probs=42.2
Q ss_pred ccCCccccccccCCc-----ccccCcCCcccHHHHHHHhhcCCccccccccc
Q 025880 146 EREEECGICMETNSK-----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~-----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l 192 (247)
..+..|.||+|.... +..++|||.||..|+..|++++++||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 347899999998877 78889999999999999999999999999833
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.50 E-value=4.6e-08 Score=63.57 Aligned_cols=35 Identities=34% Similarity=0.824 Sum_probs=21.8
Q ss_pred cccccccCCc----ccccCcCCcccHHHHHHHhhcC----Cccc
Q 025880 151 CGICMETNSK----IVLPNCNHAMCLKCYREWRIRS----QSCP 186 (247)
Q Consensus 151 C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~~----~~CP 186 (247)
|+||.| +.. |+.++|||.||.+|+.++...+ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 666 7888899999999999998743 3665
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.9e-07 Score=81.41 Aligned_cols=46 Identities=35% Similarity=0.738 Sum_probs=41.4
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
.+++..|+||++.+..|.+++|||.||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 3467899999999999999999999999999998886679999994
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.19 E-value=1.5e-06 Score=78.62 Aligned_cols=48 Identities=27% Similarity=0.627 Sum_probs=35.7
Q ss_pred CCcccccccc--CCcc---cccCcCCcccHHHHHHHh-hcCCcccccccccccc
Q 025880 148 EEECGICMET--NSKI---VLPNCNHAMCLKCYREWR-IRSQSCPFCRDSLKRV 195 (247)
Q Consensus 148 ~~~C~IC~e~--~~~~---v~~~CgH~FC~~Ci~~w~-~~~~~CP~CR~~l~~~ 195 (247)
+..|++|... ...- ...+|||.||.+|+...+ ..+..||.|+.++...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4679999984 2221 222799999999999865 4567999999988743
No 33
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.16 E-value=8.8e-07 Score=84.29 Aligned_cols=101 Identities=21% Similarity=0.497 Sum_probs=73.6
Q ss_pred eecCccccchhhhhchHHHHHHhHhHHHHHhhhcCCChHHHHHHHHHHHHHhhhchhhhhhccccccccCCccccccccC
Q 025880 79 YVDGTTTMSTHERKASIREFYAIIYPSLLQLQRGVTDTEDKKQKAVYMERYRRRDDEEQRQYTDADIEREEECGICMETN 158 (247)
Q Consensus 79 ~~dg~~~~s~~~r~~si~~fy~~i~~sL~qL~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~C~IC~e~~ 158 (247)
|.|...+..++--..++-..|+.||..|.++++.....+- .-|.+.. ....+...+.+|.+|.+..
T Consensus 481 Y~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~L--------Vl~S~~~------n~~~enk~~~~C~lc~d~a 546 (791)
T KOG1002|consen 481 YKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDL--------VLYSANA------NLPDENKGEVECGLCHDPA 546 (791)
T ss_pred HHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcce--------eeehhhc------CCCccccCceeecccCChh
Confidence 4466677777777778888899999999888855443321 1222111 1122334678999999999
Q ss_pred CcccccCcCCcccHHHHHHHhhc-----CCcccccccccc
Q 025880 159 SKIVLPNCNHAMCLKCYREWRIR-----SQSCPFCRDSLK 193 (247)
Q Consensus 159 ~~~v~~~CgH~FC~~Ci~~w~~~-----~~~CP~CR~~l~ 193 (247)
.+++..+|.|.||..|+.++... ..+||.|-..++
T Consensus 547 ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 547 EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 99999999999999999988753 469999987775
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.12 E-value=5.1e-07 Score=63.14 Aligned_cols=46 Identities=30% Similarity=0.712 Sum_probs=25.7
Q ss_pred ccCCccccccccCCccc-ccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIV-LPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v-~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
++...|++|.+.+.+|+ +..|.|.||..||.+-+. ..||+|+.+-.
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 45678999999999997 579999999999987554 45999987664
No 35
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.09 E-value=1.5e-06 Score=63.10 Aligned_cols=30 Identities=30% Similarity=0.610 Sum_probs=27.6
Q ss_pred cCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 164 PNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 164 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
--|.|.||..||.+|+..+..||++|++..
T Consensus 52 G~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 359999999999999999999999999765
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.6e-06 Score=79.22 Aligned_cols=49 Identities=31% Similarity=0.859 Sum_probs=44.5
Q ss_pred ccCCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
+...+|.||+....+.+++||.|. .|..|.+...-+.+.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 456899999999999999999999 8999999888788999999999874
No 37
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.3e-06 Score=80.85 Aligned_cols=49 Identities=31% Similarity=0.751 Sum_probs=40.2
Q ss_pred cccCCccccccccCC-----------------cccccCcCCcccHHHHHHHhh-cCCcccccccccc
Q 025880 145 IEREEECGICMETNS-----------------KIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 193 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~-----------------~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~l~ 193 (247)
.++...|+|||..+. .-.++||.|.||..|+.+|.. .+-.||.||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 456789999997644 125679999999999999998 4569999999875
No 38
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.6e-06 Score=78.96 Aligned_cols=51 Identities=33% Similarity=0.762 Sum_probs=46.3
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
....+.+|.||+..+.+|+.+||||.||..|+.+-+.....||.||.++..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 346789999999999999999999999999999988888999999998874
No 39
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.3e-06 Score=84.56 Aligned_cols=47 Identities=23% Similarity=0.669 Sum_probs=42.2
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhh-cCCcccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~l~ 193 (247)
.-..|+.|-....+.+++.|||.||..|+..... +...||.|..+|.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4478999999999999999999999999998775 6789999999887
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=3.9e-06 Score=75.09 Aligned_cols=48 Identities=27% Similarity=0.612 Sum_probs=41.2
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhc-CCccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~~ 194 (247)
...+|+||+....-|+.+.|+|.||.-||+.-... ..+|++||.++..
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 35689999999999999999999999999966554 4579999999863
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.93 E-value=2.9e-06 Score=78.48 Aligned_cols=48 Identities=35% Similarity=0.922 Sum_probs=42.5
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhc--CCccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~--~~~CP~CR~~l~~ 194 (247)
.-..|-||-|...+..+-||||..|..|+..|... +++||+||..++.
T Consensus 368 TFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred hHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 44679999999999988899999999999999854 6899999998874
No 42
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.7e-06 Score=61.33 Aligned_cols=46 Identities=33% Similarity=0.796 Sum_probs=36.2
Q ss_pred CCccccccccCCc-------------ccccCcCCcccHHHHHHHhhc---CCcccccccccc
Q 025880 148 EEECGICMETNSK-------------IVLPNCNHAMCLKCYREWRIR---SQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~-------------~v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~~l~ 193 (247)
++.|+||.-.|.. .+.--|.|.||..||.+|+.. +..||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4589999876652 144469999999999999964 469999999775
No 43
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.79 E-value=7.9e-06 Score=82.30 Aligned_cols=51 Identities=24% Similarity=0.673 Sum_probs=40.8
Q ss_pred ccccCCccccccccCC-------cccccCcCCcccHHHHHHHhhc--CCccccccccccc
Q 025880 144 DIEREEECGICMETNS-------KIVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSLKR 194 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~-------~~v~~~CgH~FC~~Ci~~w~~~--~~~CP~CR~~l~~ 194 (247)
+.++-++|+||..... ....+.|.|.||..|+-+|+.. +.+||+||..++.
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4567789999986533 2356679999999999999975 4799999987763
No 44
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.79 E-value=5.1e-06 Score=59.58 Aligned_cols=46 Identities=37% Similarity=0.954 Sum_probs=23.8
Q ss_pred CCccccccccCC-c-----ccc--cCcCCcccHHHHHHHhhc---C--------Ccccccccccc
Q 025880 148 EEECGICMETNS-K-----IVL--PNCNHAMCLKCYREWRIR---S--------QSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~-~-----~v~--~~CgH~FC~~Ci~~w~~~---~--------~~CP~CR~~l~ 193 (247)
+.+|+||++... . .+. ..|++.||..|+.+|+.. + ..||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998644 2 223 279999999999999863 1 37999999886
No 45
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=8.9e-06 Score=71.82 Aligned_cols=46 Identities=26% Similarity=0.773 Sum_probs=37.3
Q ss_pred cCCccccccccCC----------cccccCcCCcccHHHHHHHh--hcCCccccccccc
Q 025880 147 REEECGICMETNS----------KIVLPNCNHAMCLKCYREWR--IRSQSCPFCRDSL 192 (247)
Q Consensus 147 ~~~~C~IC~e~~~----------~~v~~~CgH~FC~~Ci~~w~--~~~~~CP~CR~~l 192 (247)
++..|+||-..+. +...++|+|+||..||+.|. ...++||.|+..+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 5778999986533 34567899999999999996 4678999998765
No 46
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.62 E-value=2.4e-05 Score=66.29 Aligned_cols=52 Identities=27% Similarity=0.670 Sum_probs=44.3
Q ss_pred CCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccccccCCCcccc
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVY 203 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~v~ 203 (247)
.+.|.||.+.+..|+.+.|||.||..|...-.+....|-.|-+... +..|+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~----G~f~V~ 247 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY----GRFWVV 247 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc----cceeHH
Confidence 4689999999999999999999999999988888899999976543 445554
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=8.2e-06 Score=74.46 Aligned_cols=48 Identities=27% Similarity=0.637 Sum_probs=39.5
Q ss_pred ccCCccccccccCCcc-cccCcCCcccHHHHHHHhh-cCCcccccccccc
Q 025880 146 EREEECGICMETNSKI-VLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~l~ 193 (247)
..+..|+||++.+... ....|+|.||..||..-+. ..+.||.||+.+-
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 4578899999998865 4457999999999977665 4689999998774
No 48
>PHA03096 p28-like protein; Provisional
Probab=97.51 E-value=7.4e-05 Score=67.38 Aligned_cols=57 Identities=19% Similarity=0.427 Sum_probs=40.6
Q ss_pred CccccccccCC--------cccccCcCCcccHHHHHHHhhcC---C---cccccccccccc----------cCCCccccc
Q 025880 149 EECGICMETNS--------KIVLPNCNHAMCLKCYREWRIRS---Q---SCPFCRDSLKRV----------NSGDLWVYM 204 (247)
Q Consensus 149 ~~C~IC~e~~~--------~~v~~~CgH~FC~~Ci~~w~~~~---~---~CP~CR~~l~~~----------~~~~~~v~~ 204 (247)
..|+||+|... .+.+..|.|.||..|++.|...+ . .||.|+..+..+ .|+..|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~ 258 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDD 258 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHHHHHhhcchhhhccCCchhhhcC
Confidence 67999999644 25788999999999999998643 3 455555444444 666677654
Q ss_pred C
Q 025880 205 D 205 (247)
Q Consensus 205 ~ 205 (247)
.
T Consensus 259 ~ 259 (284)
T PHA03096 259 K 259 (284)
T ss_pred h
Confidence 3
No 49
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.48 E-value=4.7e-05 Score=71.66 Aligned_cols=49 Identities=33% Similarity=0.717 Sum_probs=44.6
Q ss_pred cccCCccccccccCCccccc-CcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 145 IEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+.+..|++|+....+|+.+ .|||.||..|+..|...+..||.|+..+.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence 45678999999999999984 99999999999999999999999988775
No 50
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00028 Score=62.60 Aligned_cols=54 Identities=24% Similarity=0.658 Sum_probs=43.0
Q ss_pred ccccccccCCccccccccCCccccc-CcCCcccHHHHHHHhhc--CCcccccccccc
Q 025880 140 YTDADIEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIR--SQSCPFCRDSLK 193 (247)
Q Consensus 140 ~~~~~~~~~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~--~~~CP~CR~~l~ 193 (247)
.+....+.+.+|++|-+....|... +|||.||..|+..-... +.+||.|-.+..
T Consensus 231 ~sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 231 FSSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3444556789999999999888554 59999999999876653 579999987665
No 51
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.44 E-value=8e-05 Score=49.67 Aligned_cols=40 Identities=20% Similarity=0.741 Sum_probs=31.1
Q ss_pred ccccccc--cCCcccccCcC-----CcccHHHHHHHhhc--CCcccccc
Q 025880 150 ECGICME--TNSKIVLPNCN-----HAMCLKCYREWRIR--SQSCPFCR 189 (247)
Q Consensus 150 ~C~IC~e--~~~~~v~~~Cg-----H~FC~~Ci~~w~~~--~~~CP~CR 189 (247)
.|-||++ ....+...||. |.+|..|+.+|+.. ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 33345667885 88999999999965 45999994
No 52
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00017 Score=66.04 Aligned_cols=49 Identities=22% Similarity=0.665 Sum_probs=44.6
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
.++..|+||..-....+..||+|.-|..||.+.+.+.+.|=+|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4678999999988888999999999999999999999999999987764
No 53
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.38 E-value=6.5e-05 Score=70.53 Aligned_cols=46 Identities=30% Similarity=0.722 Sum_probs=36.8
Q ss_pred ccCCccccccccCCc----ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+--+|+||+|.+.. .+.+.|.|.||..|+..|.. .+||+||...+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 355689999997664 24457999999999999985 78999997554
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=6.8e-05 Score=67.06 Aligned_cols=46 Identities=22% Similarity=0.482 Sum_probs=42.2
Q ss_pred CCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+.|.||...+..||.+.|||.||..|...-++.+..|++|.+...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 4679999999999999999999999999988888899999988765
No 55
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=8.4e-05 Score=56.65 Aligned_cols=29 Identities=28% Similarity=0.704 Sum_probs=26.1
Q ss_pred cCcCCcccHHHHHHHhhcCCccccccccc
Q 025880 164 PNCNHAMCLKCYREWRIRSQSCPFCRDSL 192 (247)
Q Consensus 164 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l 192 (247)
-.|.|.||..||.+|+++.+.||+|.+.-
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 36999999999999999999999997653
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.16 E-value=0.00022 Score=49.04 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=29.3
Q ss_pred cCCccccccccCCcccc-cCcCCcccHHHHHHHhh--cCCcccc
Q 025880 147 REEECGICMETNSKIVL-PNCNHAMCLKCYREWRI--RSQSCPF 187 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~-~~CgH~FC~~Ci~~w~~--~~~~CP~ 187 (247)
....|+|.+..+.+|+. ..|||.|....|.+|++ ....||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46789999999999976 48999999999999994 3569998
No 57
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00013 Score=65.24 Aligned_cols=44 Identities=36% Similarity=0.908 Sum_probs=37.4
Q ss_pred CCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCcccccccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
...|.||++...+.+.++|||. -|.+|-.+ -+.||+||+-+.++
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~rv 344 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHHHH
Confidence 6789999999999999999998 79999654 34999999877643
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.01 E-value=0.00033 Score=63.65 Aligned_cols=86 Identities=16% Similarity=0.382 Sum_probs=56.4
Q ss_pred ccCCccccccccCCcc-cccCcCCcccHHHHHHHhhcCCcccccccccccccC-CCcccccCcccccc--chhhchHHHH
Q 025880 146 EREEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNS-GDLWVYMDSRDIID--SATVTRENLR 221 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~-~~~~v~~~~~~~vd--~~~~~~en~~ 221 (247)
.....|.+|...+.++ .++-|-|.||.+||.+.+.....||.|...+....+ ..+.......++|- .....+...+
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE~k 92 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQEREMK 92 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHHHH
Confidence 3567899999998886 455799999999999999999999999876653211 11111111122221 1113344566
Q ss_pred HHHHHHhhCC
Q 025880 222 RLFLYIDKLP 231 (247)
Q Consensus 222 rlf~~i~~lP 231 (247)
+.-.|..+.|
T Consensus 93 ~~rdFy~~~~ 102 (331)
T KOG2660|consen 93 RRRDFYKSRP 102 (331)
T ss_pred HHHHHHHhCC
Confidence 7777777777
No 59
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00036 Score=64.60 Aligned_cols=41 Identities=29% Similarity=0.844 Sum_probs=31.0
Q ss_pred CccccccccCCc----ccccCcCCcccHHHHHHHhhc--C-Ccccccc
Q 025880 149 EECGICMETNSK----IVLPNCNHAMCLKCYREWRIR--S-QSCPFCR 189 (247)
Q Consensus 149 ~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~--~-~~CP~CR 189 (247)
-.|.||.+.... ..+-.|||.||..|+..|+.. + .+||.||
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 469999554332 122349999999999999985 3 5899999
No 60
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.94 E-value=0.0002 Score=71.32 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=40.1
Q ss_pred cCCccccccccCCc---ccccCcCCcccHHHHHHHhhcCCcccccccccccccCC
Q 025880 147 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSG 198 (247)
Q Consensus 147 ~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~ 198 (247)
....|++|+..+.+ ....+|+|.||..|+..|....++||+||..+..+...
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 34567777765443 23347999999999999999999999999988766543
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0011 Score=60.87 Aligned_cols=46 Identities=24% Similarity=0.705 Sum_probs=35.5
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
.....|.||.+...+.+..||||.-| |..-... -.+||+||+.+..
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~-l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH-LPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHhh-CCCCchhHHHHHH
Confidence 35578999999999999999999966 6544322 3459999998764
No 62
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00094 Score=62.27 Aligned_cols=44 Identities=27% Similarity=0.799 Sum_probs=36.5
Q ss_pred CCccccccccCCc-----ccccCcCCcccHHHHHHHhhc--CCcccccccc
Q 025880 148 EEECGICMETNSK-----IVLPNCNHAMCLKCYREWRIR--SQSCPFCRDS 191 (247)
Q Consensus 148 ~~~C~IC~e~~~~-----~v~~~CgH~FC~~Ci~~w~~~--~~~CP~CR~~ 191 (247)
...|+||++.... .+.+.|||.|-..||++|+.+ ...||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 5689999997664 477889999999999999963 3699999754
No 63
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.63 E-value=0.0011 Score=66.52 Aligned_cols=44 Identities=32% Similarity=0.882 Sum_probs=38.0
Q ss_pred CccccccccCCcccccCcCCcccHHHHHHHhhcC--Ccccccccccc
Q 025880 149 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLK 193 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~--~~CP~CR~~l~ 193 (247)
..|.||++ ...++.++|||.||..|+..-+..+ ..||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 7778889999999999999877643 47999998765
No 64
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.0011 Score=58.04 Aligned_cols=44 Identities=27% Similarity=0.832 Sum_probs=31.4
Q ss_pred ccccccccCC--cccccCcCCcccHHHHHHHhhcCCcccccccccccc
Q 025880 150 ECGICMETNS--KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 150 ~C~IC~e~~~--~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
.|.-|.--.. .-.++.|+|+||..|...-. ...||+|+.++..+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeee
Confidence 4777765433 23788999999999975422 23999999997644
No 65
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.27 E-value=0.0018 Score=60.25 Aligned_cols=53 Identities=30% Similarity=0.620 Sum_probs=39.5
Q ss_pred cccccccCCccccccccCC----cccccCcCCcccHHHHHHHhhc--CCcccccccccc
Q 025880 141 TDADIEREEECGICMETNS----KIVLPNCNHAMCLKCYREWRIR--SQSCPFCRDSLK 193 (247)
Q Consensus 141 ~~~~~~~~~~C~IC~e~~~----~~v~~~CgH~FC~~Ci~~w~~~--~~~CP~CR~~l~ 193 (247)
.+...+-+..|+.|-|.+- .---+||.|+||.+|+.+.+.+ ..+||-||+-..
T Consensus 358 ~~~~~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 358 HECVEETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHHHHHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 3444456788999988643 2244689999999999999865 469999995443
No 66
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.24 E-value=0.0019 Score=43.85 Aligned_cols=46 Identities=28% Similarity=0.703 Sum_probs=37.0
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
.+..|-.|...-.+.+.++|||..|..|..- .+-+.||+|-.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 3557888888888888899999999999644 345899999887763
No 67
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.20 E-value=0.0031 Score=57.86 Aligned_cols=51 Identities=24% Similarity=0.582 Sum_probs=42.2
Q ss_pred cccccCCccccccccCCcccccCcCCcccHHHHHHH--hhcCCcccccccccc
Q 025880 143 ADIEREEECGICMETNSKIVLPNCNHAMCLKCYREW--RIRSQSCPFCRDSLK 193 (247)
Q Consensus 143 ~~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w--~~~~~~CP~CR~~l~ 193 (247)
...+++..|.||-+...-..++||+|..|--|..+. +...+.||+||..-.
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 344677899999999998888999999999998654 456899999997644
No 68
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.15 E-value=0.0071 Score=45.82 Aligned_cols=36 Identities=19% Similarity=0.521 Sum_probs=27.9
Q ss_pred cccccccCCccccccccCCcc--cccCcCCcccHHHHH
Q 025880 141 TDADIEREEECGICMETNSKI--VLPNCNHAMCLKCYR 176 (247)
Q Consensus 141 ~~~~~~~~~~C~IC~e~~~~~--v~~~CgH~FC~~Ci~ 176 (247)
.....+.+..|++|...+... +..||||.||..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 344456778899999877653 566999999999975
No 69
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.0042 Score=62.67 Aligned_cols=68 Identities=21% Similarity=0.437 Sum_probs=47.6
Q ss_pred HHHHHHHhhhchhhhhhccccccc----cCCccccccccCCcc-cccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 123 AVYMERYRRRDDEEQRQYTDADIE----REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 123 ~~~~e~~~~~~~~~~~~~~~~~~~----~~~~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+..++.|.+..++.+.+....... ....|..|-....-| |...|||.||.+|.. .....||.|+....
T Consensus 811 ~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 811 EDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 345566666665555444433332 235899999887766 667899999999987 55689999987443
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0078 Score=56.37 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=33.9
Q ss_pred cCCccccccccCCc---ccccCcCCcccHHHHHHHhhc--------CCccccccc
Q 025880 147 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR--------SQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~--------~~~CP~CR~ 190 (247)
....|.||++...- .+.+||+|.||.+|...+... .-.||-+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 46789999987553 477899999999999988753 137777644
No 71
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0048 Score=55.57 Aligned_cols=44 Identities=34% Similarity=0.782 Sum_probs=36.6
Q ss_pred CccccccccCCc------ccccCcCCcccHHHHHHHhhc-CCccccccccc
Q 025880 149 EECGICMETNSK------IVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSL 192 (247)
Q Consensus 149 ~~C~IC~e~~~~------~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l 192 (247)
..|.||-+.++. |..+.|||.+|..|+...+.. ...||+||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 469999987763 677789999999999988765 46899999875
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.70 E-value=0.01 Score=39.35 Aligned_cols=42 Identities=26% Similarity=0.702 Sum_probs=21.3
Q ss_pred cccccccCCcc--ccc--CcCCcccHHHHHHHhh-cCCccccccccc
Q 025880 151 CGICMETNSKI--VLP--NCNHAMCLKCYREWRI-RSQSCPFCRDSL 192 (247)
Q Consensus 151 C~IC~e~~~~~--v~~--~CgH~FC~~Ci~~w~~-~~~~CP~CR~~l 192 (247)
|++|.+.+... ... +||+..|..|+.+... ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67888876321 222 6899999999999886 578999999864
No 73
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.58 E-value=0.0068 Score=64.21 Aligned_cols=51 Identities=24% Similarity=0.690 Sum_probs=37.8
Q ss_pred cccCCccccccccC---CcccccCcCCcccHHHHHHHhhcC----------Ccccccccccccc
Q 025880 145 IEREEECGICMETN---SKIVLPNCNHAMCLKCYREWRIRS----------QSCPFCRDSLKRV 195 (247)
Q Consensus 145 ~~~~~~C~IC~e~~---~~~v~~~CgH~FC~~Ci~~w~~~~----------~~CP~CR~~l~~~ 195 (247)
...+..|-||+..- ...+.+.|+|.||..|.+..+.+. -+||+|..++..+
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 34567889998642 234778999999999997666542 3999999887643
No 74
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.39 E-value=0.029 Score=50.72 Aligned_cols=47 Identities=26% Similarity=0.726 Sum_probs=35.6
Q ss_pred cCCccccccccCCc---ccccCcCCcccHHHHHHHhhc-----------------------CCcccccccccc
Q 025880 147 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR-----------------------SQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~-----------------------~~~CP~CR~~l~ 193 (247)
....|.||+--|.. ...+.|-|.||..|+.+++.. ...||+||..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 35689999876553 366789999999999665531 138999999886
No 75
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.15 E-value=0.018 Score=51.26 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=39.3
Q ss_pred cccCCccccccccCCc----ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 145 IEREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
......|+|....+.. ..+-+|||+|+..++.+.- .+..||.|-.++.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence 3456899999987753 4666999999999999874 4678999999987
No 76
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.015 Score=48.88 Aligned_cols=48 Identities=23% Similarity=0.592 Sum_probs=34.8
Q ss_pred CCccccccccCCcc-------cccCcCCcccHHHHHHHhhc-----C------Ccccccccccccc
Q 025880 148 EEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIR-----S------QSCPFCRDSLKRV 195 (247)
Q Consensus 148 ~~~C~IC~e~~~~~-------v~~~CgH~FC~~Ci~~w~~~-----~------~~CP~CR~~l~~~ 195 (247)
...|+||...--++ -...||..||.-|+..|+.. + ..||.|..++.-.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 35688887643322 22369999999999999863 1 4999999888643
No 77
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.80 E-value=0.014 Score=53.04 Aligned_cols=44 Identities=27% Similarity=0.660 Sum_probs=36.7
Q ss_pred ccCCccccccccCCcccccCc--CCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNC--NHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~C--gH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
-+-.+|+||.+.+..|+.- | ||.-|.+|-. +.++.||.||.++.
T Consensus 46 ~~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhhccCchhhccCccccee-cCCCcEehhhhhh---hhcccCCccccccc
Confidence 3568999999999988654 6 8999999964 45689999999887
No 78
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.75 E-value=0.015 Score=52.58 Aligned_cols=42 Identities=21% Similarity=0.557 Sum_probs=36.0
Q ss_pred CccccccccCCccccc-CcCCcccHHHHHHHhh-cCCccccccc
Q 025880 149 EECGICMETNSKIVLP-NCNHAMCLKCYREWRI-RSQSCPFCRD 190 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~-~~~~CP~CR~ 190 (247)
..|+.|......++.+ .|+|.||..||..-+. ....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999999888776 6899999999997664 5689999965
No 79
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.43 E-value=0.026 Score=49.70 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=41.8
Q ss_pred cCCccccccccCCc----ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
....|++|.+...+ .++-+|||++|..|.++.......||+|-.+++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plk 270 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLK 270 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCc
Confidence 56789999998775 377799999999999999999999999998887
No 80
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.015 Score=52.67 Aligned_cols=46 Identities=28% Similarity=0.670 Sum_probs=34.2
Q ss_pred CCccccccccCCc-ccccCcCCcccHHHHHHHhhcCCcccccccccccc
Q 025880 148 EEECGICMETNSK-IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 148 ~~~C~IC~e~~~~-~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
-..|.-|--.+.. +...+|.|+||.+|.+. ...+.||.|-..+.++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 4567777655443 56779999999999753 3468999998887755
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.08 E-value=0.047 Score=50.85 Aligned_cols=28 Identities=32% Similarity=0.917 Sum_probs=21.6
Q ss_pred cCCcccHHHHHHHhhcC-------------Ccccccccccc
Q 025880 166 CNHAMCLKCYREWRIRS-------------QSCPFCRDSLK 193 (247)
Q Consensus 166 CgH~FC~~Ci~~w~~~~-------------~~CP~CR~~l~ 193 (247)
|.-..|..|+-+|+... ..||+||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 34456999999998532 39999999987
No 82
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.90 E-value=0.063 Score=44.31 Aligned_cols=47 Identities=23% Similarity=0.596 Sum_probs=35.0
Q ss_pred ccCCccccccccCCcccccCcCC-----cccHHHHHHHhhc--CCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNH-----AMCLKCYREWRIR--SQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH-----~FC~~Ci~~w~~~--~~~CP~CR~~l~ 193 (247)
..+..|-||.+..... ..||.. .-|.+|+.+|... ..+|++|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 3567899999875432 345654 2499999999975 469999998775
No 83
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=93.76 E-value=0.029 Score=53.10 Aligned_cols=36 Identities=25% Similarity=0.654 Sum_probs=32.2
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR 181 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~ 181 (247)
|++..|+||...+.+|++++|+|..|.-|....+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 567889999999999999999999999999876654
No 84
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.04 Score=50.34 Aligned_cols=46 Identities=20% Similarity=0.501 Sum_probs=37.2
Q ss_pred cCCccccccccCCcc-cccCcCCcccHHHHHHHhhcCCccccccccc
Q 025880 147 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l 192 (247)
+...|++|+....+| ++.--|-+||..|+..+....+.||+=-.+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 557899999887766 4445699999999999999999999854443
No 85
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.31 E-value=0.041 Score=55.76 Aligned_cols=49 Identities=35% Similarity=0.736 Sum_probs=37.3
Q ss_pred cCCccccccccCCc--c--cccCcCCcccHHHHHHHhhcC-------Ccccccccccccc
Q 025880 147 REEECGICMETNSK--I--VLPNCNHAMCLKCYREWRIRS-------QSCPFCRDSLKRV 195 (247)
Q Consensus 147 ~~~~C~IC~e~~~~--~--v~~~CgH~FC~~Ci~~w~~~~-------~~CP~CR~~l~~~ 195 (247)
+..+|.||.+.+.. + ...+|-|+||..||.+|-... -.||.|+...+.+
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~ 249 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTV 249 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccC
Confidence 56799999998764 3 233688999999999997642 2899998655543
No 86
>PHA02862 5L protein; Provisional
Probab=93.20 E-value=0.075 Score=43.21 Aligned_cols=44 Identities=20% Similarity=0.595 Sum_probs=33.9
Q ss_pred CccccccccCCcccccCcCC-----cccHHHHHHHhhc--CCcccccccccc
Q 025880 149 EECGICMETNSKIVLPNCNH-----AMCLKCYREWRIR--SQSCPFCRDSLK 193 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~~~CgH-----~FC~~Ci~~w~~~--~~~CP~CR~~l~ 193 (247)
..|-||.+...+.. -||.. .-|..|+.+|+.. ...||+|+.+..
T Consensus 3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 57999998866554 45654 3699999999974 469999998764
No 87
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=0.087 Score=47.39 Aligned_cols=44 Identities=23% Similarity=0.579 Sum_probs=32.9
Q ss_pred ccccccccC-Ccc----cccCcCCcccHHHHHHHhhc-CCcccccccccc
Q 025880 150 ECGICMETN-SKI----VLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193 (247)
Q Consensus 150 ~C~IC~e~~-~~~----v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~ 193 (247)
.|++|.... ..| ..-+|+|..|.+|....+.. +..||-|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 588887642 221 22389999999999998864 679999987665
No 88
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.88 E-value=0.095 Score=33.83 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=22.6
Q ss_pred cccccccCCccccc---CcCCcccHHHHHHHhhcCC--ccccc
Q 025880 151 CGICMETNSKIVLP---NCNHAMCLKCYREWRIRSQ--SCPFC 188 (247)
Q Consensus 151 C~IC~e~~~~~v~~---~CgH~FC~~Ci~~w~~~~~--~CP~C 188 (247)
|.+|.+....++.= .|+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67888887776443 4888999999999987644 79987
No 89
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.74 E-value=0.074 Score=42.62 Aligned_cols=48 Identities=31% Similarity=0.696 Sum_probs=37.4
Q ss_pred cCCccccccccCCccccc----CcCCcccHHHHHHHhhc---CCccccccccccc
Q 025880 147 REEECGICMETNSKIVLP----NCNHAMCLKCYREWRIR---SQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~----~CgH~FC~~Ci~~w~~~---~~~CP~CR~~l~~ 194 (247)
.-.+|.||.|...+...+ -||-..|.-|.-..|+. ...||.|+.+++.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 457899999986654222 39999999999876654 4799999998874
No 90
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.17 E-value=0.072 Score=35.14 Aligned_cols=41 Identities=34% Similarity=0.770 Sum_probs=25.3
Q ss_pred cccccccCCcccccCcC-CcccHHHHHHHhhcCCcccccccccc
Q 025880 151 CGICMETNSKIVLPNCN-HAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 151 C~IC~e~~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
|--|.-. +..+..|. |..|..|+...+.++..||+|..++.
T Consensus 5 CKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 5 CKSCWFA--NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred Chhhhhc--CCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 4444433 23345575 88999999999999999999998875
No 91
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.13 E-value=0.057 Score=43.38 Aligned_cols=35 Identities=26% Similarity=0.627 Sum_probs=26.1
Q ss_pred CCccccccccCCc--c-cccCcC------CcccHHHHHHHhhcC
Q 025880 148 EEECGICMETNSK--I-VLPNCN------HAMCLKCYREWRIRS 182 (247)
Q Consensus 148 ~~~C~IC~e~~~~--~-v~~~Cg------H~FC~~Ci~~w~~~~ 182 (247)
..+|.||++.+.. + +-.+|| |.||..|+.+|....
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 6789999998765 3 333454 889999999995433
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.69 E-value=0.14 Score=42.33 Aligned_cols=33 Identities=27% Similarity=0.627 Sum_probs=22.9
Q ss_pred CCccccccccCCcccccCc------------CCc-ccHHHHHHHhh
Q 025880 148 EEECGICMETNSKIVLPNC------------NHA-MCLKCYREWRI 180 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~C------------gH~-FC~~Ci~~w~~ 180 (247)
+..|+||||..=+.|++-| +.. -|..|+.+..+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 5679999998777766643 333 26788877643
No 93
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.63 E-value=0.042 Score=57.96 Aligned_cols=45 Identities=27% Similarity=0.749 Sum_probs=39.4
Q ss_pred ccCCccccccccCC-cccccCcCCcccHHHHHHHhhcCCccccccc
Q 025880 146 EREEECGICMETNS-KIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 146 ~~~~~C~IC~e~~~-~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
.+...|.||.+... ......|||.+|..|...|+..+..||.|..
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 34568999999877 5667779999999999999999999999984
No 94
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.063 Score=46.39 Aligned_cols=40 Identities=30% Similarity=0.786 Sum_probs=33.0
Q ss_pred ccccccccCCcccccCcCCc-ccHHHHHHHhhcCCcccccccccc
Q 025880 150 ECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 150 ~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.|-.|.+....+.++||.|. +|..|-.. -..||+|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 39999999888999999998 89999543 467999987654
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.00 E-value=0.17 Score=46.66 Aligned_cols=46 Identities=28% Similarity=0.691 Sum_probs=33.7
Q ss_pred CCccccccccCCc--c--cccCcCCcccHHHHHHHhhc-CCcccccccccc
Q 025880 148 EEECGICMETNSK--I--VLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~--~--v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~ 193 (247)
+..|+.|+|.+.. . .--+||-..|.-|+....+. ...||-||....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3459999997653 2 22368988999998776554 679999998665
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=0.32 Score=49.83 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=27.2
Q ss_pred cccCCccccccccCC-cc-cccCcCCcccHHHHHHHh
Q 025880 145 IEREEECGICMETNS-KI-VLPNCNHAMCLKCYREWR 179 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~-~~-v~~~CgH~FC~~Ci~~w~ 179 (247)
.+....|.+|.-.+. .| .+.+|||.||..|+.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 456788999988644 33 667899999999997654
No 97
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.18 Score=43.95 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=37.6
Q ss_pred ccCCccccccccCCc--ccccCcCCcccHHHHHHHhhc--------CCcccccccccc
Q 025880 146 EREEECGICMETNSK--IVLPNCNHAMCLKCYREWRIR--------SQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~--~v~~~CgH~FC~~Ci~~w~~~--------~~~CP~CR~~l~ 193 (247)
...-.|..|-..... .+.+.|-|.||.+|+.+|-.. .-.||-|..++-
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 455679999877664 466789999999999999764 249999988764
No 98
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=88.79 E-value=0.26 Score=32.33 Aligned_cols=38 Identities=24% Similarity=0.787 Sum_probs=23.8
Q ss_pred cccccccCCc--ccccCcCC-----cccHHHHHHHhhc--CCccccc
Q 025880 151 CGICMETNSK--IVLPNCNH-----AMCLKCYREWRIR--SQSCPFC 188 (247)
Q Consensus 151 C~IC~e~~~~--~v~~~CgH-----~FC~~Ci~~w~~~--~~~CP~C 188 (247)
|-||++.... +...||+- .-|..|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688876443 45566753 3689999999974 5689887
No 99
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=0.29 Score=45.84 Aligned_cols=44 Identities=18% Similarity=0.388 Sum_probs=34.5
Q ss_pred cCCccccccccCC---cccccCcCCcccHHHHHHHhhcC---Cccccccc
Q 025880 147 REEECGICMETNS---KIVLPNCNHAMCLKCYREWRIRS---QSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~~~---~~v~~~CgH~FC~~Ci~~w~~~~---~~CP~CR~ 190 (247)
.-+.|||=.+..+ +|..+.|||+.+..-+.+...+. ..||.|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 3468998776533 57888999999999999987653 59999954
No 100
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=88.36 E-value=0.12 Score=51.65 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=38.7
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhh---cCCcccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~l~ 193 (247)
...+|+||.+....++.+.|.|.||..|+..-+. ....||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 3568999999999999999999999999875443 3569999996554
No 101
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=88.26 E-value=0.59 Score=34.06 Aligned_cols=50 Identities=28% Similarity=0.690 Sum_probs=21.3
Q ss_pred cCCccccccccCCc-------ccccCcCCcccHHHHH-HHhhcCCccccccccccccc
Q 025880 147 REEECGICMETNSK-------IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVN 196 (247)
Q Consensus 147 ~~~~C~IC~e~~~~-------~v~~~CgH~FC~~Ci~-~w~~~~~~CP~CR~~l~~~~ 196 (247)
....|.||-+..-. ...-.|+-..|..|+. +....++.||.|+...++..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 45689999886431 2334688889999998 44456899999998887543
No 102
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=87.44 E-value=0.31 Score=43.85 Aligned_cols=43 Identities=30% Similarity=0.660 Sum_probs=35.6
Q ss_pred CCccccccccCC----cccccCcCCcccHHHHHHHhhcCCccccccc
Q 025880 148 EEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 148 ~~~C~IC~e~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
+..|+||.+... .+..++|||..+..|++.....+-+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 455999998643 4677789999999999988776799999987
No 103
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.14 E-value=0.34 Score=48.91 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=23.8
Q ss_pred cccCcCCcccHHHHHHHhhcCCcccc
Q 025880 162 VLPNCNHAMCLKCYREWRIRSQSCPF 187 (247)
Q Consensus 162 v~~~CgH~FC~~Ci~~w~~~~~~CP~ 187 (247)
+...|+|..|.+|..+|+.....||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCcCCC
Confidence 56679999999999999999999997
No 104
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.25 E-value=0.21 Score=43.92 Aligned_cols=47 Identities=28% Similarity=0.745 Sum_probs=34.2
Q ss_pred cCCccccccccCC-c-----ccccCcCCcccHHHHHHHhhcC-Cccc--ccccccc
Q 025880 147 REEECGICMETNS-K-----IVLPNCNHAMCLKCYREWRIRS-QSCP--FCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~-~-----~v~~~CgH~FC~~Ci~~w~~~~-~~CP--~CR~~l~ 193 (247)
.+..|++|..+.- . -+.+.|-|.+|.+|..+.+... ..|| -|-.-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 3557999986421 1 1344599999999999999764 5999 6866554
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.76 E-value=0.66 Score=47.29 Aligned_cols=49 Identities=22% Similarity=0.592 Sum_probs=37.1
Q ss_pred ccCCccccccccCC--cccccCcCCc-----ccHHHHHHHhhc--CCccccccccccc
Q 025880 146 EREEECGICMETNS--KIVLPNCNHA-----MCLKCYREWRIR--SQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~--~~v~~~CgH~-----FC~~Ci~~w~~~--~~~CP~CR~~l~~ 194 (247)
+++..|-||...-. +|..-||... .|..|+.+|+.. ...|-+|..+++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 45688999986533 4555577644 699999999975 4699999988763
No 106
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=84.42 E-value=0.86 Score=47.94 Aligned_cols=58 Identities=31% Similarity=0.655 Sum_probs=42.2
Q ss_pred cCCccccccccCCc-------ccccCcCCcccHHHHH-HHhhcCCcccccccccccccCCCcccccC
Q 025880 147 REEECGICMETNSK-------IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYMD 205 (247)
Q Consensus 147 ~~~~C~IC~e~~~~-------~v~~~CgH~FC~~Ci~-~w~~~~~~CP~CR~~l~~~~~~~~~v~~~ 205 (247)
....|.||-+.... +..-.|+-.-|..|++ +....++.||-|+...++.. +..++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k-gsprv~gD 81 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK-GSPAILGD 81 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCcCcc
Confidence 45689999987442 2444688889999997 55567899999999988654 44555554
No 107
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.74 E-value=0.68 Score=44.38 Aligned_cols=36 Identities=28% Similarity=0.759 Sum_probs=30.7
Q ss_pred ccCCccccccccCCc-ccccCcCCcccHHHHHHHhhc
Q 025880 146 EREEECGICMETNSK-IVLPNCNHAMCLKCYREWRIR 181 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~-~v~~~CgH~FC~~Ci~~w~~~ 181 (247)
....+|.||.+.... ...+.|||.||..|+...+.+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 356889999998874 777899999999999998865
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.91 E-value=1.6 Score=41.10 Aligned_cols=34 Identities=32% Similarity=0.815 Sum_probs=25.5
Q ss_pred cCCcccccc-ccCCc---ccccCcCCcccHHHHHHHhh
Q 025880 147 REEECGICM-ETNSK---IVLPNCNHAMCLKCYREWRI 180 (247)
Q Consensus 147 ~~~~C~IC~-e~~~~---~v~~~CgH~FC~~Ci~~w~~ 180 (247)
...+|.||. +.... .....|+|.||..|..+...
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 467899999 44332 13457999999999998876
No 109
>PLN02189 cellulose synthase
Probab=81.93 E-value=1.2 Score=46.65 Aligned_cols=58 Identities=31% Similarity=0.676 Sum_probs=40.9
Q ss_pred cCCccccccccCCc-------ccccCcCCcccHHHHH-HHhhcCCcccccccccccccCCCcccccC
Q 025880 147 REEECGICMETNSK-------IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYMD 205 (247)
Q Consensus 147 ~~~~C~IC~e~~~~-------~v~~~CgH~FC~~Ci~-~w~~~~~~CP~CR~~l~~~~~~~~~v~~~ 205 (247)
....|.||-+.... ...--|+-.-|..|++ +....++.||-|+...++.. +..++..+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k-gs~~v~gd 98 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK-GSPRVEGD 98 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc-CCCCcCCc
Confidence 45689999987441 2344588889999996 33456789999999988654 44455443
No 110
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.34 E-value=1.4 Score=39.06 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=30.6
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhh
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRI 180 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~ 180 (247)
..-..|+.|+....+|++++=||.||..||.+.+.
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 34567899999999999999999999999988764
No 111
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=81.27 E-value=1.4 Score=29.22 Aligned_cols=42 Identities=21% Similarity=0.542 Sum_probs=19.9
Q ss_pred CccccccccCCcccc-cCcCCcccHHHHHHHhhc-----CCcccccccc
Q 025880 149 EECGICMETNSKIVL-PNCNHAMCLKCYREWRIR-----SQSCPFCRDS 191 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~-~~CgH~FC~~Ci~~w~~~-----~~~CP~CR~~ 191 (247)
..|+|....+..|+. ..|.|.-|.+= ..|+.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 469999888887754 47999976543 233332 2379999764
No 112
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=0.78 Score=41.55 Aligned_cols=28 Identities=32% Similarity=0.767 Sum_probs=22.0
Q ss_pred cCCcccHHHHHHHhhc-------------CCcccccccccc
Q 025880 166 CNHAMCLKCYREWRIR-------------SQSCPFCRDSLK 193 (247)
Q Consensus 166 CgH~FC~~Ci~~w~~~-------------~~~CP~CR~~l~ 193 (247)
|....|.+|+-+|+.. +-+||+||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 4566789999888742 349999999887
No 113
>PLN02400 cellulose synthase
Probab=79.88 E-value=1.4 Score=46.56 Aligned_cols=58 Identities=28% Similarity=0.629 Sum_probs=41.8
Q ss_pred cCCccccccccCCc-------ccccCcCCcccHHHHH-HHhhcCCcccccccccccccCCCcccccC
Q 025880 147 REEECGICMETNSK-------IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYMD 205 (247)
Q Consensus 147 ~~~~C~IC~e~~~~-------~v~~~CgH~FC~~Ci~-~w~~~~~~CP~CR~~l~~~~~~~~~v~~~ 205 (247)
....|.||-+..-. ...-.|+-.-|..|++ +....++.||-|+...++.. +..++..+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K-gsprV~GD 100 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK-GSPRVEGD 100 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc-CCCCCCcc
Confidence 45689999987442 2444688889999996 44556899999999988763 44555544
No 114
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.23 E-value=0.67 Score=46.11 Aligned_cols=38 Identities=29% Similarity=0.618 Sum_probs=29.2
Q ss_pred cCCccccccccCC----cccccCcCCcccHHHHHHHhhcCCccc
Q 025880 147 REEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCP 186 (247)
Q Consensus 147 ~~~~C~IC~e~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP 186 (247)
.-..|.||+..+. .|+.+.|||..|.+|...-. +.+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 4467999976554 47888899999999997644 46787
No 115
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=78.97 E-value=1.7 Score=45.62 Aligned_cols=58 Identities=28% Similarity=0.576 Sum_probs=41.8
Q ss_pred cCCccccccccCCc-------ccccCcCCcccHHHHH-HHhhcCCcccccccccccccCCCcccccC
Q 025880 147 REEECGICMETNSK-------IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYMD 205 (247)
Q Consensus 147 ~~~~C~IC~e~~~~-------~v~~~CgH~FC~~Ci~-~w~~~~~~CP~CR~~l~~~~~~~~~v~~~ 205 (247)
....|.||-+.... ...-.|+-.-|..|++ +....++.||-|+...++.. +..++..+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~-~~~~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK-GCPRVEGD 79 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc-CCCCccCC
Confidence 45789999987432 2344688889999996 44456789999999888654 45566654
No 116
>PLN02436 cellulose synthase A
Probab=78.62 E-value=1.8 Score=45.55 Aligned_cols=57 Identities=30% Similarity=0.670 Sum_probs=40.1
Q ss_pred cCCccccccccCCc-------ccccCcCCcccHHHHH-HHhhcCCcccccccccccccCCCccccc
Q 025880 147 REEECGICMETNSK-------IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRVNSGDLWVYM 204 (247)
Q Consensus 147 ~~~~C~IC~e~~~~-------~v~~~CgH~FC~~Ci~-~w~~~~~~CP~CR~~l~~~~~~~~~v~~ 204 (247)
....|.||-+..-. ...--|+-.-|..|++ +....++.||-|+...++.. +..++..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k-gs~~~~~ 99 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK-GSPRVEG 99 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc-CCCCcCC
Confidence 45689999987531 2334588889999996 33446789999999888654 3444444
No 117
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=78.58 E-value=1.3 Score=45.13 Aligned_cols=46 Identities=13% Similarity=0.385 Sum_probs=31.7
Q ss_pred CCccccccccCCc-------ccccCcCCcccHHHHHHHhhc------CCcccccccccc
Q 025880 148 EEECGICMETNSK-------IVLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~-------~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~l~ 193 (247)
...|.+|.-.+.. ..+-.|+|.||..||..|..+ .-.|++|...+.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3456666554443 122359999999999999865 248899987654
No 118
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.76 E-value=1.2 Score=39.63 Aligned_cols=54 Identities=26% Similarity=0.489 Sum_probs=37.7
Q ss_pred cccCCccccccccCCccc----ccCc-----CCcccHHHHHHHhhcC--------CcccccccccccccCC
Q 025880 145 IEREEECGICMETNSKIV----LPNC-----NHAMCLKCYREWRIRS--------QSCPFCRDSLKRVNSG 198 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v----~~~C-----gH~FC~~Ci~~w~~~~--------~~CP~CR~~l~~~~~~ 198 (247)
.+.+..|-||+..-++-. .-|| .|.-|..|+..|...+ .+||-|+....-+.+.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~ 87 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQ 87 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccc
Confidence 456778999998766521 2245 3668999999998642 3899999876644443
No 119
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=74.44 E-value=5 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.781 Sum_probs=13.6
Q ss_pred cHHHHHHHhh-cCCccccc
Q 025880 171 CLKCYREWRI-RSQSCPFC 188 (247)
Q Consensus 171 C~~Ci~~w~~-~~~~CP~C 188 (247)
|..|.++|.. .++.||.-
T Consensus 58 HrdCFEK~HlIanQ~~prs 76 (285)
T PF06937_consen 58 HRDCFEKYHLIANQDCPRS 76 (285)
T ss_pred hHHHHHHHHHHHcCCCCcc
Confidence 5899999964 57888833
No 120
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.17 E-value=3 Score=37.12 Aligned_cols=61 Identities=15% Similarity=0.283 Sum_probs=42.5
Q ss_pred cCCccccccccCC----cccccCcCCcccHHHHHHHhhcCCcccccccccccccCCCcccccCccccccc
Q 025880 147 REEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDS 212 (247)
Q Consensus 147 ~~~~C~IC~e~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~v~~~~~~~vd~ 212 (247)
....|+|---.+. ...+-+|||+|-.+-+.+.- ..+|++|.+... ..+..+.+.+++.+|.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~---~~dvIvlNg~~E~~dl 174 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQ---EDDVIVLNGTEEDVDL 174 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCccc---ccCeEeeCCCHHHHHH
Confidence 4578988654443 34667899999998877644 689999999876 3455555555554554
No 121
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.04 E-value=0.48 Score=44.44 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=38.9
Q ss_pred cCCccccccccCC----cccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
-...|+||.+... +....-|||.++..|+++|+.....||.|+..+.
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 3467999987654 3455679999999999999999999999998765
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.39 E-value=1.4 Score=39.88 Aligned_cols=36 Identities=25% Similarity=0.558 Sum_probs=29.0
Q ss_pred cCCccccccccCCcccccCc----CCcccHHHHHHHhhcC
Q 025880 147 REEECGICMETNSKIVLPNC----NHAMCLKCYREWRIRS 182 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~C----gH~FC~~Ci~~w~~~~ 182 (247)
.-..|.+|.|.+++.....| .|.||..|-++-.+.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 34789999999988765566 6999999999887653
No 123
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.37 E-value=2.2 Score=34.46 Aligned_cols=59 Identities=29% Similarity=0.724 Sum_probs=36.3
Q ss_pred cccccCCcccccccc-CCcccccCcCCc-------ccHHHHHHHhhcC----CcccccccccccccCCCcccccC
Q 025880 143 ADIEREEECGICMET-NSKIVLPNCNHA-------MCLKCYREWRIRS----QSCPFCRDSLKRVNSGDLWVYMD 205 (247)
Q Consensus 143 ~~~~~~~~C~IC~e~-~~~~v~~~CgH~-------FC~~Ci~~w~~~~----~~CP~CR~~l~~~~~~~~~v~~~ 205 (247)
...+++-.|.||... |.++ |||. ||..|--+...++ -.|-+|+....-+...--|..++
T Consensus 60 aGv~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~~s 130 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFYNS 130 (169)
T ss_pred cccCcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHHhc
Confidence 445678899999874 4444 5653 4555544433332 27888987765555555676643
No 124
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.73 E-value=1.5 Score=41.33 Aligned_cols=40 Identities=23% Similarity=0.652 Sum_probs=30.1
Q ss_pred CCccccccccCCc------ccccCcCCcccHHHHHHHhhcCCccccc
Q 025880 148 EEECGICMETNSK------IVLPNCNHAMCLKCYREWRIRSQSCPFC 188 (247)
Q Consensus 148 ~~~C~IC~e~~~~------~v~~~CgH~FC~~Ci~~w~~~~~~CP~C 188 (247)
-..|+.|.-.+.. .... |||.||..|..+|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4679988865442 2444 99999999999999887777554
No 125
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=68.61 E-value=3.2 Score=38.08 Aligned_cols=51 Identities=6% Similarity=-0.149 Sum_probs=39.0
Q ss_pred ccccccccCCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCccccccccc
Q 025880 140 YTDADIEREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSL 192 (247)
Q Consensus 140 ~~~~~~~~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l 192 (247)
......-...+|-.|-+........+|+|. ||..|.. ...+.+||.|....
T Consensus 335 ~~~~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 335 SPTNGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred cccccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 333334456789999988777788899998 8999986 56678999997644
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=67.82 E-value=2.7 Score=36.38 Aligned_cols=44 Identities=23% Similarity=0.509 Sum_probs=36.5
Q ss_pred cCCccccccccCCcc-cccCcCCcccHHHHHHHhhcCCccccccc
Q 025880 147 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
.-..|.+|.+....+ ..-+||-.++..|+...+++...||.|..
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 346899999976554 56678888999999999999999999954
No 127
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=67.47 E-value=4.6 Score=37.12 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=32.9
Q ss_pred cCCccccccccCC--------------c---c--cccCcCCcccHHHHHHHhhc---------CCcccccccccc
Q 025880 147 REEECGICMETNS--------------K---I--VLPNCNHAMCLKCYREWRIR---------SQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~--------------~---~--v~~~CgH~FC~~Ci~~w~~~---------~~~CP~CR~~l~ 193 (247)
.+.+|++|+..-. + | ...||||.--.+=..-|.+- +..||+|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4678999996522 1 1 34489997767777777653 259999987765
No 128
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=65.18 E-value=1.1 Score=40.44 Aligned_cols=44 Identities=27% Similarity=0.641 Sum_probs=23.1
Q ss_pred cCCccccccccCCcccccC-----cCCcccHHHHHHHhhcCCccccccc
Q 025880 147 REEECGICMETNSKIVLPN-----CNHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~-----CgH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
....|+||-....-.++.. -.|.+|.-|-.+|.-....||.|-.
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 4579999998754332222 2567899999999988899999964
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.52 E-value=4.6 Score=37.17 Aligned_cols=45 Identities=29% Similarity=0.639 Sum_probs=35.7
Q ss_pred CccccccccCC---cccc-cCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 149 EECGICMETNS---KIVL-PNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 149 ~~C~IC~e~~~---~~v~-~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
..|+||-+... ...+ .+|||..|..|...-......||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 57999998653 1222 379999999999888888999999997665
No 130
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=62.77 E-value=1.6 Score=30.23 Aligned_cols=43 Identities=19% Similarity=0.467 Sum_probs=29.1
Q ss_pred CcccccccccccccCCCcccccCccccccchhhchHHHHHHHHHHhhCCCCCCCCcc
Q 025880 183 QSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNLF 239 (247)
Q Consensus 183 ~~CP~CR~~l~~~~~~~~~v~~~~~~~vd~~~~~~en~~rlf~~i~~lP~~~p~~~~ 239 (247)
-.||.||.++..... .. .+.-...++.|--.+.+|.++|+-..
T Consensus 9 LaCP~~kg~L~~~~~--------~~------~L~c~~~~~aYpI~dGIPvlL~~eaR 51 (60)
T COG2835 9 LACPVCKGPLVYDEE--------KQ------ELICPRCKLAYPIRDGIPVLLPDEAR 51 (60)
T ss_pred eeccCcCCcceEecc--------CC------EEEecccCceeecccCccccCchhhc
Confidence 369999998653222 11 23444667888888889999987654
No 131
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=62.15 E-value=4.9 Score=23.04 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=10.9
Q ss_pred ccccccccCCc--ccccCcCCcc
Q 025880 150 ECGICMETNSK--IVLPNCNHAM 170 (247)
Q Consensus 150 ~C~IC~e~~~~--~v~~~CgH~F 170 (247)
.|+-|...+.. ...+.|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 36666555432 2444566665
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.11 E-value=5.6 Score=40.45 Aligned_cols=42 Identities=17% Similarity=0.478 Sum_probs=32.0
Q ss_pred CccccccccCCc--ccccCcCCcccHHHHHHHhhcCCcccc--ccc
Q 025880 149 EECGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPF--CRD 190 (247)
Q Consensus 149 ~~C~IC~e~~~~--~v~~~CgH~FC~~Ci~~w~~~~~~CP~--CR~ 190 (247)
..|.+|-..+.. .-..-|||.-|..|+..|+.....||. |..
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 357777665543 244569999999999999999988887 644
No 133
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=60.29 E-value=1.1 Score=31.97 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=24.9
Q ss_pred CccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccccc
Q 025880 149 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~~ 196 (247)
..|+.|...+.... +|.+|..|-.. +.....||-|..++..+.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~-~~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKD-YKKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--E-EEEEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEeC----CEEECcccccc-ceecccCCCcccHHHHHH
Confidence 46999988754322 78888888764 445679999999887543
No 134
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=58.39 E-value=2.4 Score=38.76 Aligned_cols=44 Identities=20% Similarity=0.519 Sum_probs=32.8
Q ss_pred CCccccccccCCccccc----CcC--CcccHHHHHHHhhcCCcccccccc
Q 025880 148 EEECGICMETNSKIVLP----NCN--HAMCLKCYREWRIRSQSCPFCRDS 191 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~----~Cg--H~FC~~Ci~~w~~~~~~CP~CR~~ 191 (247)
...|+||-....-.++. .=| |.+|..|-.+|......||.|-.+
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45899999875432221 233 668999999999999999999753
No 135
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=58.19 E-value=3.3 Score=39.08 Aligned_cols=46 Identities=24% Similarity=0.659 Sum_probs=0.0
Q ss_pred CCccccccccCC--------------c---c--cccCcCCcccHHHHHHHhhc---------CCcccccccccc
Q 025880 148 EEECGICMETNS--------------K---I--VLPNCNHAMCLKCYREWRIR---------SQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~--------------~---~--v~~~CgH~FC~~Ci~~w~~~---------~~~CP~CR~~l~ 193 (247)
..+|++|+..-. + | ..-||||.--.+...-|.+- +..||+|-.+|.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999996522 1 1 44489999888888888753 258999988876
No 136
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=57.29 E-value=13 Score=28.94 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=29.0
Q ss_pred cCCccccccccCC-----cccccCcCCcccHHHHHHHhhcC--Cccccccccc
Q 025880 147 REEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIRS--QSCPFCRDSL 192 (247)
Q Consensus 147 ~~~~C~IC~e~~~-----~~v~~~CgH~FC~~Ci~~w~~~~--~~CP~CR~~l 192 (247)
.+..|.+|...+. ......|+|.+|.+|-.. .... -.|.+|...-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHHH
Confidence 5679999987643 236668999999999644 1111 2788887643
No 137
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=56.62 E-value=3.2 Score=38.08 Aligned_cols=44 Identities=20% Similarity=0.533 Sum_probs=32.8
Q ss_pred cCCccccccccCCcccc---cCc--CCcccHHHHHHHhhcCCccccccc
Q 025880 147 REEECGICMETNSKIVL---PNC--NHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~---~~C--gH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
....|++|-....-.++ ..= .|..|..|-.+|.-....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 46889999987542211 122 355899999999999999999975
No 138
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=56.46 E-value=6.6 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.963 Sum_probs=8.9
Q ss_pred cccHHHHHHHhh
Q 025880 169 AMCLKCYREWRI 180 (247)
Q Consensus 169 ~FC~~Ci~~w~~ 180 (247)
.||..|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 139
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=56.35 E-value=7.1 Score=35.92 Aligned_cols=43 Identities=21% Similarity=0.439 Sum_probs=32.7
Q ss_pred CCccccccccC---CcccccCcCCcccHHHHHHHhhc---CCccccccc
Q 025880 148 EEECGICMETN---SKIVLPNCNHAMCLKCYREWRIR---SQSCPFCRD 190 (247)
Q Consensus 148 ~~~C~IC~e~~---~~~v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~ 190 (247)
-+.|++=.|.. ..|+.+.|||+.-..-++...++ +..||.|-.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 46788866643 35788899999999998887654 369999943
No 140
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.05 E-value=10 Score=29.64 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=32.1
Q ss_pred CccccccccCCcc--------------cccCcCCcccHHHHHHHhhcCCcccccc
Q 025880 149 EECGICMETNSKI--------------VLPNCNHAMCLKCYREWRIRSQSCPFCR 189 (247)
Q Consensus 149 ~~C~IC~e~~~~~--------------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 189 (247)
..|--|...+..+ ....|++.||.+|=.=+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4588898876543 2568999999999877777778899995
No 141
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=53.68 E-value=9.1 Score=25.65 Aligned_cols=28 Identities=25% Similarity=0.696 Sum_probs=15.3
Q ss_pred cccCcCCcccHHHHHHHhhcCCcccccc
Q 025880 162 VLPNCNHAMCLKCYREWRIRSQSCPFCR 189 (247)
Q Consensus 162 v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 189 (247)
.-+.|++.||.+|=.=....-.+||-|.
T Consensus 23 ~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcChhhhccccCCcCCC
Confidence 4468999999999543334556899884
No 142
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.63 E-value=11 Score=38.00 Aligned_cols=44 Identities=30% Similarity=0.782 Sum_probs=36.2
Q ss_pred ccccccccCCcccccCcCC-cccHHHHHHHhh--c----CCcccccccccc
Q 025880 150 ECGICMETNSKIVLPNCNH-AMCLKCYREWRI--R----SQSCPFCRDSLK 193 (247)
Q Consensus 150 ~C~IC~e~~~~~v~~~CgH-~FC~~Ci~~w~~--~----~~~CP~CR~~l~ 193 (247)
.|+||-....-....+||| .-|..|..+... . +..||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999999988888899999 799999987643 3 468899998654
No 143
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.44 E-value=12 Score=28.70 Aligned_cols=44 Identities=23% Similarity=0.565 Sum_probs=27.2
Q ss_pred cCCccccccccCCcc--------cccCc---CCcccHHHHHHHhhc---------CCccccccc
Q 025880 147 REEECGICMETNSKI--------VLPNC---NHAMCLKCYREWRIR---------SQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~--------v~~~C---gH~FC~~Ci~~w~~~---------~~~CP~CR~ 190 (247)
....|..|.....+. ...+| .=.||..|+..+... .-.||.||.
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 344566666532221 22445 556999999877643 237999986
No 144
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.36 E-value=5.2 Score=36.47 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=40.1
Q ss_pred cCCccccccccCCcccc-cCcCCcccHHHHHHHhhcCCcccccccccccc
Q 025880 147 REEECGICMETNSKIVL-PNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~-~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
....|-||......+.+ -.|+|.||..|-..|....+.||.|+...+.+
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 45678999887766533 35999999999999999999999999876644
No 145
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=50.54 E-value=12 Score=33.38 Aligned_cols=46 Identities=20% Similarity=0.637 Sum_probs=34.7
Q ss_pred CCccccccccCCc----ccccCcC-----CcccHHHHHHHhh--cCCcccccccccc
Q 025880 148 EEECGICMETNSK----IVLPNCN-----HAMCLKCYREWRI--RSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~----~v~~~Cg-----H~FC~~Ci~~w~~--~~~~CP~CR~~l~ 193 (247)
+..|-||.+.... +...||. +..|..|+..|.. .+..|..|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999986543 4566674 3358999999997 5679999987665
No 146
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.84 E-value=12 Score=39.40 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=34.2
Q ss_pred cCCccccccccCCcccccCcCC-----cccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNH-----AMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH-----~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
....|+-|-.......++.||. .||..| .+......||-|.....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCC
Confidence 3568999988877778888984 499999 33344568999987765
No 147
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.10 E-value=6 Score=37.39 Aligned_cols=29 Identities=38% Similarity=0.856 Sum_probs=0.0
Q ss_pred cccCcCCcccHHHHHHHhh------cCCcccccccccc
Q 025880 162 VLPNCNHAMCLKCYREWRI------RSQSCPFCRDSLK 193 (247)
Q Consensus 162 v~~~CgH~FC~~Ci~~w~~------~~~~CP~CR~~l~ 193 (247)
+-++|||++-.. .|.. ....||+||..-.
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCccccCC
Confidence 667899987653 4643 2469999997554
No 148
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=47.30 E-value=3.5 Score=27.77 Aligned_cols=19 Identities=26% Similarity=1.008 Sum_probs=15.1
Q ss_pred cccCcCCcccHHHHHHHhh
Q 025880 162 VLPNCNHAMCLKCYREWRI 180 (247)
Q Consensus 162 v~~~CgH~FC~~Ci~~w~~ 180 (247)
..+.|||.||..|..+|..
T Consensus 42 ~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 42 TCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred ECCCCCCeECCCCCCcCCC
Confidence 3347999999999988854
No 149
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.83 E-value=3.7 Score=36.78 Aligned_cols=44 Identities=30% Similarity=0.665 Sum_probs=33.5
Q ss_pred CCccccccccCC------cccccC--------cCCcccHHHHHHHhhcC-Ccccccccc
Q 025880 148 EEECGICMETNS------KIVLPN--------CNHAMCLKCYREWRIRS-QSCPFCRDS 191 (247)
Q Consensus 148 ~~~C~IC~e~~~------~~v~~~--------CgH~FC~~Ci~~w~~~~-~~CP~CR~~ 191 (247)
...|.||...+. .|.... |||..|..|+..-+.+. ..||+|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 367999986554 244455 99999999999887543 699999864
No 150
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.81 E-value=11 Score=37.17 Aligned_cols=44 Identities=27% Similarity=0.781 Sum_probs=36.1
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+....|.||.+.. ....++|. +..|+..|...+..||.|+..+.
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhh
Confidence 3567899999887 55566787 68899999999999999998765
No 151
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.27 E-value=7.8 Score=32.32 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred cCCccccccccCCc---ccccCcCCcccH
Q 025880 147 REEECGICMETNSK---IVLPNCNHAMCL 172 (247)
Q Consensus 147 ~~~~C~IC~e~~~~---~v~~~CgH~FC~ 172 (247)
+.-+|.||+|.... ...+||-.+||.
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 55789999998875 356678777664
No 152
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=43.67 E-value=8 Score=26.78 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=16.6
Q ss_pred cCCccccccccCCcc----cccCcCCcccHHHHHHH
Q 025880 147 REEECGICMETNSKI----VLPNCNHAMCLKCYREW 178 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----v~~~CgH~FC~~Ci~~w 178 (247)
+...|.+|...|.-. ..-.||+.||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 456899999988532 33479999999997543
No 153
>PLN02195 cellulose synthase A
Probab=43.25 E-value=18 Score=38.12 Aligned_cols=47 Identities=19% Similarity=0.514 Sum_probs=34.5
Q ss_pred cCCccccccccCC-----c--ccccCcCCcccHHHHH-HHhhcCCcccccccccc
Q 025880 147 REEECGICMETNS-----K--IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~-----~--~v~~~CgH~FC~~Ci~-~w~~~~~~CP~CR~~l~ 193 (247)
....|.||-+... + ...-.|+-.-|..|++ +-...++.||-|+...+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3457999998543 1 2444688889999996 33446789999998776
No 154
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=41.62 E-value=5.1 Score=25.45 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=17.3
Q ss_pred cCcCCcccHHHHHHHhhcCCccccccc-ccccc
Q 025880 164 PNCNHAMCLKCYREWRIRSQSCPFCRD-SLKRV 195 (247)
Q Consensus 164 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~-~l~~~ 195 (247)
..|||.|-...-..= .....||.|.. .+.++
T Consensus 9 ~~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~ 40 (42)
T PF09723_consen 9 EECGHEFEVLQSISE-DDPVPCPECGSTEVRRV 40 (42)
T ss_pred CCCCCEEEEEEEcCC-CCCCcCCCCCCCceEEe
Confidence 467777754321110 23468999987 55543
No 155
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=41.29 E-value=8.8 Score=38.14 Aligned_cols=41 Identities=24% Similarity=0.519 Sum_probs=25.9
Q ss_pred cCCcccccccc-CCc-------ccccCcCCcccHHHHHHHhhcCCccccccc
Q 025880 147 REEECGICMET-NSK-------IVLPNCNHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~-~~~-------~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
....|.+|... ..- .....||+.||..|. ...+..||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~---~r~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCL---RRKSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHH---hccCCCCCchHH
Confidence 34667777432 111 234469999999995 344555999954
No 156
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=41.19 E-value=13 Score=24.75 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=6.1
Q ss_pred Ccccccccccc
Q 025880 183 QSCPFCRDSLK 193 (247)
Q Consensus 183 ~~CP~CR~~l~ 193 (247)
..||+|..++.
T Consensus 21 ~~CPlC~r~l~ 31 (54)
T PF04423_consen 21 GCCPLCGRPLD 31 (54)
T ss_dssp EE-TTT--EE-
T ss_pred CcCCCCCCCCC
Confidence 49999999887
No 157
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=41.11 E-value=16 Score=31.17 Aligned_cols=39 Identities=28% Similarity=0.726 Sum_probs=27.4
Q ss_pred cCCcccccccc-CC-------cccccCcCCcccHHHHHHHhhcCCccccccc
Q 025880 147 REEECGICMET-NS-------KIVLPNCNHAMCLKCYREWRIRSQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~-~~-------~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~ 190 (247)
....|.+|.+. .. ......|+-.||..|.. +..||-|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45788899753 11 12445799999999965 277999954
No 158
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.06 E-value=8.5 Score=39.38 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=29.7
Q ss_pred ccCCccccccccCC-------cccccCcCCcccHHHHHHHhhcCCccccc
Q 025880 146 EREEECGICMETNS-------KIVLPNCNHAMCLKCYREWRIRSQSCPFC 188 (247)
Q Consensus 146 ~~~~~C~IC~e~~~-------~~v~~~CgH~FC~~Ci~~w~~~~~~CP~C 188 (247)
.-+..|.-|.+... ..+...|||.||..|+..-..+++ |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 34568999998644 345668999999999976554444 5444
No 159
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=40.37 E-value=9.7 Score=39.24 Aligned_cols=44 Identities=34% Similarity=0.801 Sum_probs=32.7
Q ss_pred CCccccccccCCc--ccccCcCCcccHHHHHHHhhc------CCcccccccc
Q 025880 148 EEECGICMETNSK--IVLPNCNHAMCLKCYREWRIR------SQSCPFCRDS 191 (247)
Q Consensus 148 ~~~C~IC~e~~~~--~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~ 191 (247)
...|..|.....+ =+...|||.+|..|++.|.-+ ...|++|+..
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~ 280 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLK 280 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHh
Confidence 4578899876554 377889999999999999511 2478887753
No 160
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=40.24 E-value=25 Score=23.82 Aligned_cols=36 Identities=19% Similarity=0.578 Sum_probs=26.7
Q ss_pred CCccccccccCCc----ccccCcCCcccHHHHHHHhhcCCcccc
Q 025880 148 EEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPF 187 (247)
Q Consensus 148 ~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~ 187 (247)
...|.+|-+.+.+ .+.+.||-.+|..|..+ ...|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 4579999998842 47789999999999643 345544
No 161
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=39.25 E-value=17 Score=24.10 Aligned_cols=36 Identities=28% Similarity=0.590 Sum_probs=20.9
Q ss_pred CCccccccccCCcccccCcCCcccHHHHHHHhh--cCCccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRI--RSQSCPFCRD 190 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~ 190 (247)
...|+.|.+.+....+ +. .|...-.. +...||+|..
T Consensus 2 ~f~CP~C~~~~~~~~L--~~-----H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL--VE-----HCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHHH--HH-----HHHhHCcCCCCCccCCCchh
Confidence 4679999985544332 23 33333222 2458999975
No 163
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=38.86 E-value=23 Score=23.26 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=21.7
Q ss_pred CccccccccCCc----ccccCcCCcccHHHHHHHh
Q 025880 149 EECGICMETNSK----IVLPNCNHAMCLKCYREWR 179 (247)
Q Consensus 149 ~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~ 179 (247)
..|.+|...+.. .....||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 468888765543 3445799999999976543
No 164
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=38.46 E-value=20 Score=33.12 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=28.4
Q ss_pred cCCccccccccCCc---ccccCcCCcccHHHHHHHhhcCCcccccc
Q 025880 147 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCR 189 (247)
Q Consensus 147 ~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 189 (247)
.+..|-.|.+.... .....|.|.||.+|=.=....-..||-|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 34458888554332 24557889999999655445557888885
No 165
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=38.43 E-value=25 Score=37.17 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHhh-------hhcCCCCCCCceeEeeeeecch
Q 025880 9 SFKDSLKVLEADIQHANTL-------ASDFPREYDGACLQMRMSYSPA 49 (247)
Q Consensus 9 ~~~~~~~~l~~di~~an~l-------a~~~~~~~~g~~~qmrl~~s~~ 49 (247)
-|+.||+.|.+||-|||+| |.+ +++. .-+|..|...++
T Consensus 653 mf~~SL~rLr~~iv~AN~LVrEAN~laeE--m~Kk-T~y~VTLQIPaa 697 (1714)
T KOG0241|consen 653 MFRQSLARLREQIVKANTLVREANFLAEE--MSKK-TDYQVTLQIPAA 697 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhc-cceeEEEEcchh
Confidence 6999999999999999998 334 2333 456666665443
No 166
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.34 E-value=14 Score=29.76 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=17.4
Q ss_pred cccccccCCcccccCcCCcccHH
Q 025880 151 CGICMETNSKIVLPNCNHAMCLK 173 (247)
Q Consensus 151 C~IC~e~~~~~v~~~CgH~FC~~ 173 (247)
=-||...-.....-.|||.||..
T Consensus 60 lfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 60 LFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEEecccccEEEEeccccccCh
Confidence 34777777777777899999974
No 167
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.66 E-value=27 Score=30.70 Aligned_cols=25 Identities=20% Similarity=0.709 Sum_probs=21.1
Q ss_pred ccHHHHHHHhhcCCccccccccccc
Q 025880 170 MCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 170 FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
-|.+|......+...||+|++....
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccccc
Confidence 3999999988889999999876543
No 168
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=35.34 E-value=6.8 Score=21.70 Aligned_cols=9 Identities=33% Similarity=0.973 Sum_probs=4.1
Q ss_pred CCccccccc
Q 025880 182 SQSCPFCRD 190 (247)
Q Consensus 182 ~~~CP~CR~ 190 (247)
.+-||.|-.
T Consensus 13 ~~fC~~CG~ 21 (23)
T PF13240_consen 13 AKFCPNCGT 21 (23)
T ss_pred CcchhhhCC
Confidence 344555543
No 169
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=35.26 E-value=25 Score=30.92 Aligned_cols=24 Identities=25% Similarity=0.825 Sum_probs=20.1
Q ss_pred cHHHHHHHhhcCCccccccccccc
Q 025880 171 CLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 171 C~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
|.+|-.+...+...||+|+.....
T Consensus 252 ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhcccc
Confidence 889988888888999999876543
No 170
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=32.79 E-value=25 Score=27.44 Aligned_cols=25 Identities=28% Similarity=0.688 Sum_probs=17.9
Q ss_pred ccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 163 LPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 163 ~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.++|+|. ...+.+...|+.|+++++
T Consensus 72 CP~C~K~------TKmLGr~D~CM~C~~pLT 96 (114)
T PF11023_consen 72 CPNCGKQ------TKMLGRVDACMHCKEPLT 96 (114)
T ss_pred CCCCCCh------HhhhchhhccCcCCCcCc
Confidence 3466663 234566789999999998
No 171
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=31.97 E-value=25 Score=20.55 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=18.8
Q ss_pred cccccccCCc--ccccCcCCcccHHHHHHHhhcCCccccccccc
Q 025880 151 CGICMETNSK--IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192 (247)
Q Consensus 151 C~IC~e~~~~--~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l 192 (247)
|..|.+.+.. .....=+..||..| ..|..|..+|
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 6667766554 23223355566655 4666676554
No 172
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.19 E-value=26 Score=26.41 Aligned_cols=13 Identities=23% Similarity=0.892 Sum_probs=11.2
Q ss_pred cccHHHHHHHhhc
Q 025880 169 AMCLKCYREWRIR 181 (247)
Q Consensus 169 ~FC~~Ci~~w~~~ 181 (247)
.||..|+..|...
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 173
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=28.97 E-value=42 Score=22.97 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=19.6
Q ss_pred CcccHHHHHHHhhcCCcccccccccc
Q 025880 168 HAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 168 H~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
..||..|....+ ...||-|...+.
T Consensus 29 CTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 29 CTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CcccHHHHHHHh--cCcCcCCCCccc
Confidence 459999998876 589999987764
No 174
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.73 E-value=28 Score=35.46 Aligned_cols=47 Identities=26% Similarity=0.549 Sum_probs=33.6
Q ss_pred cCCccccccccCCcc----------cccCcCCcc--------------------cHHHHHHHhhc--------CCccccc
Q 025880 147 REEECGICMETNSKI----------VLPNCNHAM--------------------CLKCYREWRIR--------SQSCPFC 188 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----------v~~~CgH~F--------------------C~~Ci~~w~~~--------~~~CP~C 188 (247)
+--.|.-|++.+.+| ..++||..| |..|-+++... ...||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 456899999765542 667888877 99999877542 2599999
Q ss_pred ccccc
Q 025880 189 RDSLK 193 (247)
Q Consensus 189 R~~l~ 193 (247)
--.+.
T Consensus 180 GP~~~ 184 (750)
T COG0068 180 GPHLF 184 (750)
T ss_pred CCCeE
Confidence 65443
No 175
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=27.13 E-value=4.1e+02 Score=24.26 Aligned_cols=88 Identities=20% Similarity=0.351 Sum_probs=50.4
Q ss_pred ccCCccccccccCCccccc----CcC--CcccHHHHHHHhhcCCcccccccccccccCCCcccccCc-cccccchhhchH
Q 025880 146 EREEECGICMETNSKIVLP----NCN--HAMCLKCYREWRIRSQSCPFCRDSLKRVNSGDLWVYMDS-RDIIDSATVTRE 218 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~----~Cg--H~FC~~Ci~~w~~~~~~CP~CR~~l~~~~~~~~~v~~~~-~~~vd~~~~~~e 218 (247)
+.-..|++|-......++. .-| -.-|.-|..+|..-...|--|-.+ ..-.+|...+. ...|...+--+=
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~t----~~l~y~sl~s~E~A~vkAEtC~~C 258 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQS----KKLHYWSLESSELAAVKAETCGDC 258 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHHHHhcccccc----CCccceeccchhhhHhhhhcCCcH
Confidence 5567899999865542221 112 225999999999988899999652 23345555442 222333222222
Q ss_pred HHHHHHHHHhhCCCCCCCC
Q 025880 219 NLRRLFLYIDKLPLIIPDN 237 (247)
Q Consensus 219 n~~rlf~~i~~lP~~~p~~ 237 (247)
|.=--.+|.+|=|.+.+.+
T Consensus 259 ~sYlKilyqekdp~veavA 277 (308)
T COG3058 259 NSYLKILYQEKDPKVEAVA 277 (308)
T ss_pred HHHHHHHHHhcCCccccch
Confidence 2212345667778876643
No 176
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.05 E-value=37 Score=24.51 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=20.6
Q ss_pred cCCcccHHHHHHHhhcCCcccccccccc
Q 025880 166 CNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 166 CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
=.|.||..|....+ ...||-|-..+.
T Consensus 27 fEcTFCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 27 FECTFCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred EeeehhHhHHHHhh--cCcCCCCCchhh
Confidence 35889999988655 479999987765
No 177
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=49 Score=31.58 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=25.5
Q ss_pred ccCCccccccccCC------cccccCcCCcccHHHHHHHh
Q 025880 146 EREEECGICMETNS------KIVLPNCNHAMCLKCYREWR 179 (247)
Q Consensus 146 ~~~~~C~IC~e~~~------~~v~~~CgH~FC~~Ci~~w~ 179 (247)
.....|+-|.-.+. +...+.|||.||.-|-....
T Consensus 366 ~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 366 SNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred hcCCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 35678999987655 35778899999999875543
No 178
>PRK11827 hypothetical protein; Provisional
Probab=25.59 E-value=8.4 Score=26.73 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=27.7
Q ss_pred HhhcCCcccccccccccccCCCcccccCccccccchhhchHHHHHHHHHHhhCCCCCCCCc
Q 025880 178 WRIRSQSCPFCRDSLKRVNSGDLWVYMDSRDIIDSATVTRENLRRLFLYIDKLPLIIPDNL 238 (247)
Q Consensus 178 w~~~~~~CP~CR~~l~~~~~~~~~v~~~~~~~vd~~~~~~en~~rlf~~i~~lP~~~p~~~ 238 (247)
|+..--.||.|+.++...... . .+.-+..+..|--.+.+|.+++|..
T Consensus 4 ~LLeILaCP~ckg~L~~~~~~--------~------~Lic~~~~laYPI~dgIPVlL~deA 50 (60)
T PRK11827 4 RLLEIIACPVCNGKLWYNQEK--------Q------ELICKLDNLAFPLRDGIPVLLETEA 50 (60)
T ss_pred HHHhheECCCCCCcCeEcCCC--------C------eEECCccCeeccccCCccccCHHHh
Confidence 344445799999988632111 1 1222234556666777888887654
No 179
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=25.32 E-value=33 Score=37.23 Aligned_cols=46 Identities=24% Similarity=0.534 Sum_probs=31.8
Q ss_pred CCccccccccCCcccccCcCCc-----ccHHHHHHHhhc---CCcccccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHA-----MCLKCYREWRIR---SQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~-----FC~~Ci~~w~~~---~~~CP~CR~~l~ 193 (247)
...|+-|-.......++.||+. .|.+|-.+.-.. ...||.|..++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 4789999887666688889865 388886542211 237999987665
No 180
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=24.04 E-value=8.6 Score=25.71 Aligned_cols=19 Identities=32% Similarity=0.989 Sum_probs=14.7
Q ss_pred cccCcCCcccHHHHHHHhh
Q 025880 162 VLPNCNHAMCLKCYREWRI 180 (247)
Q Consensus 162 v~~~CgH~FC~~Ci~~w~~ 180 (247)
.-..|++.||..|-.+|..
T Consensus 42 ~C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 42 TCPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp CTTSCCSEECSSSTSESCT
T ss_pred ECCCCCCcCccccCcccCC
Confidence 3445999999999888743
No 181
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=23.31 E-value=42 Score=22.22 Aligned_cols=9 Identities=44% Similarity=1.490 Sum_probs=6.6
Q ss_pred hcCCccccc
Q 025880 180 IRSQSCPFC 188 (247)
Q Consensus 180 ~~~~~CP~C 188 (247)
.....||.|
T Consensus 47 ~~~~~CP~C 55 (55)
T PF14311_consen 47 RRGKGCPYC 55 (55)
T ss_pred cCCCCCCCC
Confidence 456788887
No 182
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.19 E-value=42 Score=34.01 Aligned_cols=38 Identities=16% Similarity=0.412 Sum_probs=27.7
Q ss_pred CccccccccCC----cccccCcCCcccHHHHHHHhhcCCcccccc
Q 025880 149 EECGICMETNS----KIVLPNCNHAMCLKCYREWRIRSQSCPFCR 189 (247)
Q Consensus 149 ~~C~IC~e~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR 189 (247)
..|-+|...-. -+..+.|+-.+|..| |..-++.||.|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccC
Confidence 46888876433 246668999999998 555667899994
No 183
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=23.00 E-value=22 Score=32.80 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=36.2
Q ss_pred cCCccccccccCCcccccCcCCc-ccHHHHHHH-hhcCCcccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHA-MCLKCYREW-RIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w-~~~~~~CP~CR~~l~ 193 (247)
....|.+|.+........+|+|. ||..|...- .++...||+|...+.
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 45678899887766666789998 999997655 566788999986554
No 184
>PRK11595 DNA utilization protein GntX; Provisional
Probab=22.70 E-value=61 Score=27.95 Aligned_cols=22 Identities=32% Similarity=0.747 Sum_probs=10.1
Q ss_pred ccHHHHHHHhhcCCcccccccc
Q 025880 170 MCLKCYREWRIRSQSCPFCRDS 191 (247)
Q Consensus 170 FC~~Ci~~w~~~~~~CP~CR~~ 191 (247)
.|..|...+......||.|-.+
T Consensus 22 lC~~C~~~l~~~~~~C~~Cg~~ 43 (227)
T PRK11595 22 ICSVCSRALRTLKTCCPQCGLP 43 (227)
T ss_pred ccHHHHhhCCcccCcCccCCCc
Confidence 4555555443222345555443
No 185
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=22.32 E-value=53 Score=20.94 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=15.4
Q ss_pred cccccccCCcccccCcCCcccHH
Q 025880 151 CGICMETNSKIVLPNCNHAMCLK 173 (247)
Q Consensus 151 C~IC~e~~~~~v~~~CgH~FC~~ 173 (247)
|..|......-+.+.|+|.+|..
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCC
Confidence 66777555444667799888843
No 186
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.78 E-value=31 Score=33.07 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=15.6
Q ss_pred cccccCcCCcccHHHHHHHh
Q 025880 160 KIVLPNCNHAMCLKCYREWR 179 (247)
Q Consensus 160 ~~v~~~CgH~FC~~Ci~~w~ 179 (247)
..+.-.|||.||..|..+|.
T Consensus 178 ~~v~C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 178 VEVDCGCGHEFCFACGEESH 197 (444)
T ss_pred cceeCCCCchhHhhcccccc
Confidence 34666899999999986654
No 187
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=21.77 E-value=97 Score=16.91 Aligned_cols=14 Identities=43% Similarity=0.401 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHh
Q 025880 13 SLKVLEADIQHANT 26 (247)
Q Consensus 13 ~~~~l~~di~~an~ 26 (247)
+=|.||||.|..++
T Consensus 2 akk~lEa~~qkLe~ 15 (21)
T PF02370_consen 2 AKKQLEADHQKLEA 15 (21)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34788888887654
No 188
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.64 E-value=24 Score=21.51 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=9.2
Q ss_pred CCccccccccccc
Q 025880 182 SQSCPFCRDSLKR 194 (247)
Q Consensus 182 ~~~CP~CR~~l~~ 194 (247)
...||.|...+.+
T Consensus 26 ~~~CP~Cg~~~~r 38 (41)
T smart00834 26 LATCPECGGDVRR 38 (41)
T ss_pred CCCCCCCCCccee
Confidence 4589999876554
No 189
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.61 E-value=61 Score=33.73 Aligned_cols=31 Identities=16% Similarity=0.442 Sum_probs=23.4
Q ss_pred CccccccccCCc---------ccccCcCCcccHHHHHHHh
Q 025880 149 EECGICMETNSK---------IVLPNCNHAMCLKCYREWR 179 (247)
Q Consensus 149 ~~C~IC~e~~~~---------~v~~~CgH~FC~~Ci~~w~ 179 (247)
..|..|...|.. -..-.||..||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 569999998852 1245799999999986543
Done!