Query 025880
Match_columns 247
No_of_seqs 368 out of 1714
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ng2_A RNF4, snurf, ring finge 99.4 5.2E-14 1.8E-18 99.0 2.8 50 145-194 7-63 (71)
2 4ayc_A E3 ubiquitin-protein li 99.4 1.6E-13 5.4E-18 109.4 5.6 49 146-194 51-99 (138)
3 2djb_A Polycomb group ring fin 99.4 3.6E-13 1.2E-17 95.5 4.4 51 144-194 11-62 (72)
4 2d8t_A Dactylidin, ring finger 99.4 2.4E-13 8.3E-18 96.1 3.2 48 146-193 13-60 (71)
5 1t1h_A Gspef-atpub14, armadill 99.4 3.3E-13 1.1E-17 96.8 3.9 50 144-193 4-54 (78)
6 2kiz_A E3 ubiquitin-protein li 99.4 3.9E-13 1.3E-17 94.2 4.0 51 145-195 11-64 (69)
7 2csy_A Zinc finger protein 183 99.4 3.8E-13 1.3E-17 97.4 3.9 49 145-193 12-60 (81)
8 1iym_A EL5; ring-H2 finger, ub 99.3 3.3E-13 1.1E-17 90.4 3.2 48 146-193 3-54 (55)
9 2ea6_A Ring finger protein 4; 99.3 2.2E-13 7.5E-18 95.0 2.3 49 145-193 12-67 (69)
10 2egp_A Tripartite motif-contai 99.3 2.9E-13 1E-17 97.1 2.9 50 144-193 8-64 (79)
11 2ecw_A Tripartite motif-contai 99.3 9E-13 3.1E-17 95.3 5.2 49 145-193 16-70 (85)
12 2xeu_A Ring finger protein 4; 99.3 2.1E-13 7.1E-18 93.8 1.4 48 147-194 2-56 (64)
13 2ecy_A TNF receptor-associated 99.3 6.2E-13 2.1E-17 92.6 3.8 50 144-193 11-61 (66)
14 2ecn_A Ring finger protein 141 99.3 3.8E-13 1.3E-17 94.6 2.7 49 145-194 12-60 (70)
15 1chc_A Equine herpes virus-1 r 99.3 7.5E-13 2.6E-17 92.4 3.8 49 147-195 4-53 (68)
16 2ecv_A Tripartite motif-contai 99.3 1.1E-12 3.9E-17 94.8 4.8 50 144-193 15-70 (85)
17 2ecm_A Ring finger and CHY zin 99.3 6E-13 2E-17 89.0 3.0 47 147-193 4-54 (55)
18 2yur_A Retinoblastoma-binding 99.3 6.8E-13 2.3E-17 94.6 3.4 50 144-193 11-63 (74)
19 2ysl_A Tripartite motif-contai 99.3 9.9E-13 3.4E-17 93.0 3.8 50 144-193 16-68 (73)
20 3ztg_A E3 ubiquitin-protein li 99.3 5.8E-13 2E-17 98.5 2.6 50 144-193 9-61 (92)
21 2ep4_A Ring finger protein 24; 99.3 1.1E-12 3.9E-17 93.0 3.8 50 145-194 12-64 (74)
22 2ct2_A Tripartite motif protei 99.3 1.8E-12 6.1E-17 94.7 4.9 50 144-193 11-67 (88)
23 2l0b_A E3 ubiquitin-protein li 99.3 8.6E-13 2.9E-17 97.9 3.1 49 145-193 37-88 (91)
24 3lrq_A E3 ubiquitin-protein li 99.3 5.4E-13 1.8E-17 100.7 2.0 48 146-193 20-69 (100)
25 1x4j_A Ring finger protein 38; 99.3 6.3E-13 2.1E-17 94.8 2.2 48 146-193 21-71 (75)
26 2ect_A Ring finger protein 126 99.3 9.9E-13 3.4E-17 94.3 2.7 50 145-194 12-64 (78)
27 2ecl_A Ring-box protein 2; RNF 99.3 1.8E-12 6.1E-17 94.3 3.5 47 147-193 14-75 (81)
28 2ckl_A Polycomb group ring fin 99.3 1.2E-12 4.1E-17 99.9 2.7 51 144-194 11-62 (108)
29 1v87_A Deltex protein 2; ring- 99.3 3.1E-12 1E-16 98.2 4.2 48 147-194 24-94 (114)
30 3fl2_A E3 ubiquitin-protein li 99.3 1.4E-12 4.8E-17 101.9 2.3 48 146-193 50-98 (124)
31 2ysj_A Tripartite motif-contai 99.2 4E-12 1.4E-16 87.5 4.2 45 144-188 16-63 (63)
32 2y43_A E3 ubiquitin-protein li 99.2 1.6E-12 5.5E-17 97.5 2.3 48 146-193 20-68 (99)
33 2kr4_A Ubiquitin conjugation f 99.2 3.3E-12 1.1E-16 93.8 3.4 50 144-193 10-59 (85)
34 2ecj_A Tripartite motif-contai 99.2 7.2E-12 2.5E-16 84.4 4.2 45 144-188 11-58 (58)
35 1jm7_A BRCA1, breast cancer ty 99.2 5.1E-12 1.7E-16 96.4 3.2 48 147-194 20-70 (112)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 4.4E-12 1.5E-16 99.0 2.4 51 146-196 5-62 (133)
37 2kre_A Ubiquitin conjugation f 99.2 8E-12 2.7E-16 94.6 3.5 50 144-193 25-74 (100)
38 1e4u_A Transcriptional repress 99.2 3E-11 1E-15 87.5 5.8 51 144-194 7-62 (78)
39 1z6u_A NP95-like ring finger p 99.2 6.4E-12 2.2E-16 101.8 2.3 50 145-194 75-125 (150)
40 1g25_A CDK-activating kinase a 99.2 7.8E-12 2.7E-16 86.6 2.3 46 148-193 3-54 (65)
41 1wgm_A Ubiquitin conjugation f 99.2 1.6E-11 5.3E-16 92.7 3.9 50 144-193 18-68 (98)
42 3hct_A TNF receptor-associated 99.2 9.8E-12 3.3E-16 96.4 2.9 50 144-193 14-64 (118)
43 3dpl_R Ring-box protein 1; ubi 99.2 1.5E-11 5.1E-16 94.1 3.9 47 147-193 36-100 (106)
44 3l11_A E3 ubiquitin-protein li 99.2 3.4E-12 1.2E-16 98.3 0.2 49 146-194 13-62 (115)
45 1rmd_A RAG1; V(D)J recombinati 99.1 1.3E-11 4.3E-16 95.2 2.0 48 146-193 21-69 (116)
46 2ckl_B Ubiquitin ligase protei 99.1 1.3E-11 4.5E-16 100.9 2.1 48 146-193 52-101 (165)
47 3knv_A TNF receptor-associated 99.1 2.3E-11 7.8E-16 97.6 3.3 50 144-193 27-77 (141)
48 2vje_A E3 ubiquitin-protein li 99.1 2.3E-11 8E-16 84.6 2.6 48 147-194 7-57 (64)
49 2vje_B MDM4 protein; proto-onc 99.1 3.7E-11 1.2E-15 83.3 2.8 49 146-194 5-56 (63)
50 4ap4_A E3 ubiquitin ligase RNF 99.1 3E-11 1E-15 94.2 1.4 49 146-194 70-125 (133)
51 1bor_A Transcription factor PM 99.0 4.1E-11 1.4E-15 80.9 1.8 45 146-193 4-48 (56)
52 1jm7_B BARD1, BRCA1-associated 99.0 2.6E-11 9E-16 93.8 0.9 46 146-193 20-66 (117)
53 2c2l_A CHIP, carboxy terminus 99.0 1.1E-10 3.9E-15 101.7 4.9 50 144-193 204-254 (281)
54 2y1n_A E3 ubiquitin-protein li 99.0 8.5E-11 2.9E-15 108.4 3.9 48 147-194 331-379 (389)
55 4ic3_A E3 ubiquitin-protein li 99.0 3.2E-11 1.1E-15 86.1 0.6 44 147-194 23-67 (74)
56 4a0k_B E3 ubiquitin-protein li 99.0 5.3E-11 1.8E-15 92.6 0.2 47 147-193 47-111 (117)
57 2f42_A STIP1 homology and U-bo 99.0 4.2E-10 1.4E-14 93.7 5.1 51 143-193 101-152 (179)
58 2yu4_A E3 SUMO-protein ligase 99.0 1.9E-10 6.5E-15 85.8 2.6 48 146-193 5-62 (94)
59 3hcs_A TNF receptor-associated 98.9 2.4E-10 8E-15 93.7 2.9 50 144-193 14-64 (170)
60 2ecg_A Baculoviral IAP repeat- 98.9 2.8E-10 9.6E-15 81.2 1.9 44 147-194 24-68 (75)
61 2d8s_A Cellular modulator of i 98.9 9.6E-10 3.3E-14 79.9 3.0 48 146-193 13-69 (80)
62 2ea5_A Cell growth regulator w 98.8 1.5E-09 5E-14 76.4 3.3 46 145-194 12-58 (68)
63 2yho_A E3 ubiquitin-protein li 98.8 4.7E-10 1.6E-14 81.2 0.7 45 147-195 17-62 (79)
64 2ct0_A Non-SMC element 1 homol 98.8 4.7E-09 1.6E-13 75.1 4.4 49 146-194 13-64 (74)
65 3htk_C E3 SUMO-protein ligase 98.6 9E-09 3.1E-13 90.1 2.9 48 146-193 179-231 (267)
66 2bay_A PRE-mRNA splicing facto 98.6 1.2E-08 4E-13 70.3 2.1 46 148-193 3-49 (61)
67 3t6p_A Baculoviral IAP repeat- 98.6 4.7E-09 1.6E-13 95.7 0.0 46 146-195 293-339 (345)
68 1wim_A KIAA0161 protein; ring 98.5 4.6E-08 1.6E-12 72.5 2.9 45 147-191 4-61 (94)
69 3k1l_B Fancl; UBC, ring, RWD, 98.5 3.6E-08 1.2E-12 89.2 1.9 48 146-193 306-372 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.4 2.9E-07 9.9E-12 63.0 3.7 48 146-193 4-58 (60)
71 3vk6_A E3 ubiquitin-protein li 98.3 4E-07 1.4E-11 68.2 2.8 47 150-196 3-51 (101)
72 3nw0_A Non-structural maintena 97.5 9.1E-05 3.1E-09 64.0 4.6 47 147-193 179-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0044 1.5E-07 45.6 2.8 33 147-179 2-37 (101)
74 3m62_A Ubiquitin conjugation f 93.4 0.14 4.8E-06 52.0 7.2 51 143-193 886-937 (968)
75 2ko5_A Ring finger protein Z; 93.3 0.043 1.5E-06 40.4 2.4 45 147-193 27-72 (99)
76 1weo_A Cellulose synthase, cat 87.5 1.3 4.5E-05 32.1 5.7 49 147-195 15-71 (93)
77 2cs3_A Protein C14ORF4, MY039 86.8 0.43 1.5E-05 34.1 2.8 36 146-181 13-52 (93)
78 2lri_C Autoimmune regulator; Z 86.7 0.36 1.2E-05 33.0 2.3 46 147-192 11-60 (66)
79 3u5n_A E3 ubiquitin-protein li 79.7 0.66 2.3E-05 38.5 1.6 47 146-192 5-55 (207)
80 2l5u_A Chromodomain-helicase-D 79.2 1 3.6E-05 30.0 2.2 47 144-190 7-57 (61)
81 3o36_A Transcription intermedi 76.6 2.1 7E-05 34.7 3.7 46 147-192 3-52 (184)
82 1zbd_B Rabphilin-3A; G protein 75.6 2.5 8.7E-05 32.8 3.8 60 146-205 53-121 (134)
83 1mm2_A MI2-beta; PHD, zinc fin 73.9 0.79 2.7E-05 30.6 0.4 46 146-191 7-56 (61)
84 2yql_A PHD finger protein 21A; 73.6 0.49 1.7E-05 31.0 -0.7 46 145-190 6-55 (56)
85 1wil_A KIAA1045 protein; ring 71.7 4.8 0.00016 28.9 4.0 33 145-178 12-47 (89)
86 2lbm_A Transcriptional regulat 71.2 6 0.00021 31.0 5.0 46 145-190 60-116 (142)
87 3ql9_A Transcriptional regulat 70.7 6.2 0.00021 30.5 4.9 46 145-190 54-110 (129)
88 1joc_A EEA1, early endosomal a 69.8 12 0.00039 28.5 6.3 31 147-177 68-102 (125)
89 2pv0_B DNA (cytosine-5)-methyl 69.3 5.2 0.00018 36.5 4.9 46 145-190 90-147 (386)
90 1z60_A TFIIH basal transcripti 69.0 3.2 0.00011 27.7 2.5 40 149-188 16-58 (59)
91 2zet_C Melanophilin; complex, 65.1 4.7 0.00016 32.0 3.3 44 147-191 67-117 (153)
92 3a1b_A DNA (cytosine-5)-methyl 64.6 7.1 0.00024 31.2 4.2 36 146-181 77-114 (159)
93 2jmo_A Parkin; IBR, E3 ligase, 64.5 0.6 2E-05 33.0 -1.9 20 165-186 55-74 (80)
94 1xwh_A Autoimmune regulator; P 59.6 1.5 5.1E-05 29.6 -0.5 45 146-190 6-54 (66)
95 2puy_A PHD finger protein 21A; 58.9 1.8 6.1E-05 28.6 -0.2 46 147-192 4-53 (60)
96 1y02_A CARP2, FYVE-ring finger 58.1 1.6 5.6E-05 33.3 -0.6 46 147-192 18-67 (120)
97 2ro1_A Transcription intermedi 56.8 2.7 9.4E-05 34.3 0.5 44 148-191 2-49 (189)
98 1vfy_A Phosphatidylinositol-3- 55.7 6.4 0.00022 26.9 2.2 29 148-176 11-43 (73)
99 1fp0_A KAP-1 corepressor; PHD 55.5 3.3 0.00011 29.9 0.7 47 145-191 22-72 (88)
100 3t7l_A Zinc finger FYVE domain 54.5 6.1 0.00021 28.2 2.0 32 147-178 19-54 (90)
101 2k16_A Transcription initiatio 54.2 3.2 0.00011 28.5 0.4 47 147-193 17-70 (75)
102 2d8v_A Zinc finger FYVE domain 54.1 6 0.00021 27.0 1.8 33 146-179 6-39 (67)
103 1wd2_A Ariadne-1 protein homol 52.3 2.8 9.6E-05 27.9 -0.1 34 148-181 6-47 (60)
104 3zyq_A Hepatocyte growth facto 51.7 5.5 0.00019 33.4 1.6 32 146-177 162-197 (226)
105 1z2q_A LM5-1; membrane protein 51.2 7.3 0.00025 27.4 1.9 31 147-177 20-54 (84)
106 2yw8_A RUN and FYVE domain-con 50.7 6.9 0.00024 27.4 1.7 31 147-177 18-52 (82)
107 1f62_A Transcription factor WS 50.1 6.2 0.00021 24.8 1.3 41 150-190 2-49 (51)
108 2l43_A N-teminal domain from h 49.3 4.8 0.00016 28.8 0.7 47 146-192 23-76 (88)
109 2gmg_A Hypothetical protein PF 49.2 3.5 0.00012 30.8 -0.0 27 160-191 67-93 (105)
110 1dvp_A HRS, hepatocyte growth 49.0 6.5 0.00022 32.6 1.6 32 146-177 159-194 (220)
111 2ysm_A Myeloid/lymphoid or mix 48.8 4.5 0.00015 29.8 0.5 35 146-180 5-42 (111)
112 1x4u_A Zinc finger, FYVE domai 48.3 7.8 0.00027 27.2 1.7 30 147-176 13-46 (84)
113 2o35_A Hypothetical protein DU 48.3 7 0.00024 28.8 1.4 13 169-181 42-54 (105)
114 3fyb_A Protein of unknown func 48.2 7 0.00024 28.8 1.4 12 169-180 41-52 (104)
115 3i2d_A E3 SUMO-protein ligase 45.6 13 0.00046 33.6 3.2 47 147-193 248-299 (371)
116 1wfk_A Zinc finger, FYVE domai 45.1 9.4 0.00032 27.2 1.7 47 147-193 8-65 (88)
117 2e6r_A Jumonji/ARID domain-con 45.1 2.6 8.9E-05 30.4 -1.3 48 144-191 12-66 (92)
118 4fo9_A E3 SUMO-protein ligase 44.5 14 0.00048 33.3 3.2 47 147-193 214-265 (360)
119 2fiy_A Protein FDHE homolog; F 44.4 2 6.7E-05 38.1 -2.5 46 146-191 180-231 (309)
120 1m3v_A FLIN4, fusion of the LI 40.5 13 0.00046 27.5 2.1 46 148-193 32-80 (122)
121 1we9_A PHD finger family prote 40.5 5.1 0.00017 26.5 -0.3 46 146-191 4-58 (64)
122 3mpx_A FYVE, rhogef and PH dom 39.2 6.3 0.00022 35.6 0.0 33 147-179 374-410 (434)
123 2ku3_A Bromodomain-containing 38.7 9.9 0.00034 26.0 0.9 46 145-190 13-65 (71)
124 2ct7_A Ring finger protein 31; 36.8 2.7 9.1E-05 29.8 -2.4 28 162-189 45-74 (86)
125 1wen_A Inhibitor of growth fam 33.7 19 0.00063 24.6 1.7 44 146-192 14-66 (71)
126 2lv9_A Histone-lysine N-methyl 33.3 10 0.00034 27.6 0.3 41 149-190 29-75 (98)
127 1weu_A Inhibitor of growth fam 32.4 21 0.00071 25.7 1.8 43 147-192 35-86 (91)
128 1wev_A Riken cDNA 1110020M19; 30.2 6.1 0.00021 28.2 -1.3 48 146-193 14-74 (88)
129 2yt5_A Metal-response element- 30.1 15 0.00051 24.2 0.7 46 146-191 4-61 (66)
130 2xjy_A Rhombotin-2; oncoprotei 29.9 26 0.0009 25.9 2.2 47 147-193 28-77 (131)
131 1x62_A C-terminal LIM domain p 29.6 27 0.00093 23.5 2.0 39 147-193 14-52 (79)
132 2a20_A Regulating synaptic mem 29.5 5.1 0.00017 26.8 -1.7 34 146-179 7-44 (62)
133 4gne_A Histone-lysine N-methyl 28.9 29 0.001 25.6 2.2 46 145-192 12-63 (107)
134 1wig_A KIAA1808 protein; LIM d 27.5 32 0.0011 22.8 2.1 37 149-193 6-42 (73)
135 1x64_A Alpha-actinin-2 associa 26.3 34 0.0011 23.6 2.1 40 146-193 23-62 (89)
136 2cor_A Pinch protein; LIM doma 26.0 51 0.0017 22.2 2.9 38 148-193 15-52 (79)
137 2d8x_A Protein pinch; LIM doma 25.7 29 0.00099 22.6 1.5 38 148-193 5-42 (70)
138 1rut_X Flinc4, fusion protein 25.6 20 0.00067 28.7 0.8 46 148-193 32-80 (188)
139 2dar_A PDZ and LIM domain prot 25.2 23 0.0008 24.5 1.0 39 147-193 24-62 (90)
140 1wyh_A SLIM 2, skeletal muscle 24.8 42 0.0015 21.8 2.3 38 148-193 5-44 (72)
141 1x6a_A LIMK-2, LIM domain kina 24.5 37 0.0013 22.8 2.0 37 149-193 16-52 (81)
142 3v43_A Histone acetyltransfera 23.8 78 0.0027 23.1 3.8 30 147-176 4-42 (112)
143 1nyp_A Pinch protein; LIM doma 23.8 28 0.00097 22.4 1.2 38 148-193 5-42 (66)
144 3asl_A E3 ubiquitin-protein li 23.5 13 0.00045 25.2 -0.6 41 150-190 20-68 (70)
145 3c6w_A P28ING5, inhibitor of g 23.2 15 0.00052 24.0 -0.3 41 147-190 8-57 (59)
146 3mjh_B Early endosome antigen 22.6 17 0.00058 21.4 -0.1 12 149-160 6-17 (34)
147 2lcq_A Putative toxin VAPC6; P 22.6 26 0.00088 27.4 0.9 28 162-195 134-161 (165)
148 2vnf_A ING 4, P29ING4, inhibit 22.5 16 0.00053 24.0 -0.3 41 147-190 9-58 (60)
149 2vpb_A Hpygo1, pygopus homolog 22.5 41 0.0014 22.4 1.8 31 146-176 6-41 (65)
150 2d8z_A Four and A half LIM dom 22.2 37 0.0013 22.0 1.6 37 149-193 6-42 (70)
151 1x4l_A Skeletal muscle LIM-pro 22.0 40 0.0014 22.0 1.7 38 148-193 5-46 (72)
152 3c5k_A HD6, histone deacetylas 21.3 33 0.0011 25.4 1.2 25 148-172 24-48 (109)
153 2ri7_A Nucleosome-remodeling f 20.6 18 0.00062 28.5 -0.4 44 147-191 7-59 (174)
154 4g9i_A Hydrogenase maturation 20.4 33 0.0011 34.0 1.4 47 147-193 105-189 (772)
155 2xqn_T Testin, TESS; metal-bin 20.1 59 0.002 23.7 2.5 45 147-193 29-74 (126)
No 1
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=5.2e-14 Score=99.00 Aligned_cols=50 Identities=32% Similarity=0.784 Sum_probs=44.9
Q ss_pred cccCCccccccccCCcc-------cccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 145 IEREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
.+++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 35678899999998876 888999999999999999999999999998873
No 2
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.41 E-value=1.6e-13 Score=109.43 Aligned_cols=49 Identities=41% Similarity=0.862 Sum_probs=45.2
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
+++..|+||++.+.+|+.++|||.||..||..|+..+.+||+||.++..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3567899999999999999999999999999999999999999998863
No 3
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.6e-13 Score=95.45 Aligned_cols=51 Identities=22% Similarity=0.457 Sum_probs=45.5
Q ss_pred ccccCCccccccccCCccccc-CcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
+.+++..|+||++.+.+++.+ +|||.||..||.+|+..+..||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 345678999999999988775 999999999999999989999999998874
No 4
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-13 Score=96.08 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=44.9
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.++..|+||++.+.+++.++|||.||..|+.+|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 456889999999999999999999999999999999999999999886
No 5
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.36 E-value=3.3e-13 Score=96.83 Aligned_cols=50 Identities=16% Similarity=0.335 Sum_probs=45.6
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhc-CCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~ 193 (247)
+..++..|+||++.+.+|+.++|||.||..||.+|+.. +.+||.||.++.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34568899999999999999999999999999999986 789999999886
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=3.9e-13 Score=94.24 Aligned_cols=51 Identities=27% Similarity=0.699 Sum_probs=43.8
Q ss_pred cccCCccccccccCC---cccccCcCCcccHHHHHHHhhcCCcccccccccccc
Q 025880 145 IEREEECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
.+.+..|+||++.+. .++.++|||.||..|+.+|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999998774 457789999999999999999999999999988754
No 7
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.8e-13 Score=97.40 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=45.2
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+....|+||++.+.+|+.++|||.||..|+.+|+.....||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3456899999999999999999999999999999998999999999875
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.35 E-value=3.3e-13 Score=90.38 Aligned_cols=48 Identities=23% Similarity=0.672 Sum_probs=41.4
Q ss_pred ccCCccccccccCCc---ccccC-cCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSK---IVLPN-CNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~---~v~~~-CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+++.+|+||++.+.. ++.++ |||.||..|+.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456789999999876 55555 9999999999999999999999998764
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.2e-13 Score=95.03 Aligned_cols=49 Identities=33% Similarity=0.796 Sum_probs=44.0
Q ss_pred cccCCccccccccCCcc-------cccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 145 IEREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
..++..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 45678999999998776 78899999999999999999999999999875
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.34 E-value=2.9e-13 Score=97.06 Aligned_cols=50 Identities=28% Similarity=0.677 Sum_probs=45.0
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhc-------CCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-------SQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~-------~~~CP~CR~~l~ 193 (247)
..+++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||+||.++.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34567899999999999999999999999999999976 579999999886
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=9e-13 Score=95.34 Aligned_cols=49 Identities=33% Similarity=0.693 Sum_probs=44.7
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHhhc------CCcccccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLK 193 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~l~ 193 (247)
.+++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||.++.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4567899999999999999999999999999999987 679999999876
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.33 E-value=2.1e-13 Score=93.75 Aligned_cols=48 Identities=33% Similarity=0.823 Sum_probs=42.9
Q ss_pred cCCccccccccCCcc-------cccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 147 REEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
++.+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 457899999998765 788999999999999999999999999998863
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.2e-13 Score=92.56 Aligned_cols=50 Identities=22% Similarity=0.523 Sum_probs=44.5
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhh-cCCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~l~ 193 (247)
..+++..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 3456789999999999999999999999999999994 5679999999886
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.8e-13 Score=94.56 Aligned_cols=49 Identities=37% Similarity=0.976 Sum_probs=44.5
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
..++..|+||++.+.+ +.++|||.||..|+.+|+.....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 3467899999999988 888999999999999999999999999998874
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.32 E-value=7.5e-13 Score=92.40 Aligned_cols=49 Identities=33% Similarity=0.842 Sum_probs=43.9
Q ss_pred cCCccccccccCCcc-cccCcCCcccHHHHHHHhhcCCcccccccccccc
Q 025880 147 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
.+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 467899999999885 7889999999999999999999999999988743
No 16
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=94.76 Aligned_cols=50 Identities=30% Similarity=0.753 Sum_probs=45.2
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhc------CCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR------SQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~l~ 193 (247)
+.+++..|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34567899999999999999999999999999999976 689999999887
No 17
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32 E-value=6e-13 Score=88.99 Aligned_cols=47 Identities=26% Similarity=0.619 Sum_probs=41.8
Q ss_pred cCCccccccccCCc----ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+..|+||++.+.. ++.++|||.||..|+.+|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56789999998754 788899999999999999998899999998764
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.32 E-value=6.8e-13 Score=94.63 Aligned_cols=50 Identities=28% Similarity=0.600 Sum_probs=44.3
Q ss_pred ccccCCccccccccCCcccccC-cCCcccHHHHHHHhhcC--Ccccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIRS--QSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~-CgH~FC~~Ci~~w~~~~--~~CP~CR~~l~ 193 (247)
+..++..|+||++.+.+|+.++ |||.||..||..|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3456789999999999999999 99999999999999865 69999999754
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.9e-13 Score=92.95 Aligned_cols=50 Identities=32% Similarity=0.764 Sum_probs=44.5
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhh---cCCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~l~ 193 (247)
+.+++..|+||++.+.+++.++|||.||..|+..|+. ....||+||.++.
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 3456789999999999999999999999999999996 4569999999886
No 20
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.30 E-value=5.8e-13 Score=98.49 Aligned_cols=50 Identities=28% Similarity=0.600 Sum_probs=44.3
Q ss_pred ccccCCccccccccCCcccccC-cCCcccHHHHHHHhhcC--Ccccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIRS--QSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~-CgH~FC~~Ci~~w~~~~--~~CP~CR~~l~ 193 (247)
..+++..|+||++.+.+|+.++ |||.||..||..|+..+ ..||.||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4567889999999999999999 99999999999999643 59999999874
No 21
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=93.04 Aligned_cols=50 Identities=26% Similarity=0.610 Sum_probs=42.9
Q ss_pred cccCCccccccccCCcccc---cCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 145 IEREEECGICMETNSKIVL---PNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~---~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
...+..|+||++.+..+.. ++|||.||..||.+|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 3467899999999876533 3899999999999999988999999998864
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=94.69 Aligned_cols=50 Identities=32% Similarity=0.761 Sum_probs=44.6
Q ss_pred ccccCCccccccccCCc----ccccCcCCcccHHHHHHHhhcC---Ccccccccccc
Q 025880 144 DIEREEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRS---QSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~~---~~CP~CR~~l~ 193 (247)
..+++..|+||++.+.. ++.++|||.||..|+.+|+..+ ..||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 44567899999999988 8889999999999999999875 79999999876
No 23
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.30 E-value=8.6e-13 Score=97.93 Aligned_cols=49 Identities=29% Similarity=0.615 Sum_probs=43.1
Q ss_pred cccCCccccccccCCc---ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 145 IEREEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+.+..|+||++.+.. ++.++|||.||..||..|+..+.+||+||.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 3467889999998776 677789999999999999999999999999875
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.29 E-value=5.4e-13 Score=100.71 Aligned_cols=48 Identities=35% Similarity=0.870 Sum_probs=44.1
Q ss_pred ccCCccccccccCCcccc-cCcCCcccHHHHHHHhhcC-Ccccccccccc
Q 025880 146 EREEECGICMETNSKIVL-PNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~-~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~l~ 193 (247)
+++..|+||++.+.+|+. ++|||.||..||.+|+..+ ..||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 456789999999999998 9999999999999999887 69999999886
No 25
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=6.3e-13 Score=94.84 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=42.8
Q ss_pred ccCCccccccccCCcc---cccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+++..|+||++.+..+ +.++|||.||..|+.+|+..+.+||+||+++.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4567899999988765 67789999999999999999999999999876
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.28 E-value=9.9e-13 Score=94.32 Aligned_cols=50 Identities=32% Similarity=0.632 Sum_probs=43.2
Q ss_pred cccCCccccccccCCcc---cccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 145 IEREEECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
...+.+|+||++.+..+ ..++|||.||..||.+|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 45678999999988754 456899999999999999989999999998873
No 27
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=94.28 Aligned_cols=47 Identities=26% Similarity=0.690 Sum_probs=40.2
Q ss_pred cCCccccccccCCc--------------c-cccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSK--------------I-VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~--------------~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
++..|+||++.+.. + ++++|||.||..||.+|+..+.+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 46779999998754 2 45569999999999999999999999999876
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=1.2e-12 Score=99.85 Aligned_cols=51 Identities=20% Similarity=0.521 Sum_probs=46.0
Q ss_pred ccccCCccccccccCCccccc-CcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
+.+++..|+||++.+.+|+.+ +|||.||..||..|+..+..||.||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 345678999999999999886 999999999999999999999999998874
No 29
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.25 E-value=3.1e-12 Score=98.23 Aligned_cols=48 Identities=35% Similarity=0.643 Sum_probs=40.4
Q ss_pred cCCccccccccCCccc------------------ccCcCCcccHHHHHHHh-----hcCCccccccccccc
Q 025880 147 REEECGICMETNSKIV------------------LPNCNHAMCLKCYREWR-----IRSQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v------------------~~~CgH~FC~~Ci~~w~-----~~~~~CP~CR~~l~~ 194 (247)
.+..|+||++.+..+. +++|||.||..||..|+ ..+.+||+||..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 4568999999986543 78999999999999999 446799999998863
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=101.85 Aligned_cols=48 Identities=29% Similarity=0.557 Sum_probs=43.5
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcC-Ccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~l~ 193 (247)
+++..|+||++.+.+|+.++|||.||..||..|+... ..||.||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 4567899999999999999999999999999999854 49999999886
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=4e-12 Score=87.53 Aligned_cols=45 Identities=33% Similarity=0.779 Sum_probs=40.2
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhh---cCCccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFC 188 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~C 188 (247)
..+++..|+||++.+.+|+.++|||.||..||.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456789999999999999999999999999999997 45699998
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=1.6e-12 Score=97.55 Aligned_cols=48 Identities=27% Similarity=0.682 Sum_probs=43.9
Q ss_pred ccCCccccccccCCccccc-CcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+++..|+||++.+.+|+.+ +|||.||..|+..|+..+..||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 3567899999999999776 89999999999999998899999999886
No 33
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=3.3e-12 Score=93.83 Aligned_cols=50 Identities=18% Similarity=0.058 Sum_probs=46.3
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+..++..|+||++.+.+|+.++|||+||..||.+|+....+||+||.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34578999999999999999999999999999999998899999999886
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.2e-12 Score=84.44 Aligned_cols=45 Identities=31% Similarity=0.907 Sum_probs=39.5
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhh---cCCccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI---RSQSCPFC 188 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~C 188 (247)
+..++..|+||++.+.+++.++|||.||..||.+|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999999999999999999999999954 56799998
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=5.1e-12 Score=96.39 Aligned_cols=48 Identities=27% Similarity=0.746 Sum_probs=42.9
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhcCC---ccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQ---SCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~---~CP~CR~~l~~ 194 (247)
+...|+||++.+.+|+.++|||.||..|+..|+..+. .||.||.++..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4568999999999999999999999999999998653 89999998873
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=4.4e-12 Score=98.95 Aligned_cols=51 Identities=31% Similarity=0.777 Sum_probs=45.5
Q ss_pred ccCCccccccccCCcc-------cccCcCCcccHHHHHHHhhcCCccccccccccccc
Q 025880 146 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRVN 196 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~~ 196 (247)
.++..|+||++.+.++ +.++|||.||..||.+|+..+.+||+||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3568899999999887 88999999999999999999999999999887433
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.19 E-value=8e-12 Score=94.64 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=46.3
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+..++..|+||++.+.+|+.++|||+||..||..|+....+||+||.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 34568999999999999999999999999999999998899999999886
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.17 E-value=3e-11 Score=87.47 Aligned_cols=51 Identities=29% Similarity=0.653 Sum_probs=41.1
Q ss_pred ccccCCccccccccCC--cccccC--cCCcccHHHHHHHhh-cCCccccccccccc
Q 025880 144 DIEREEECGICMETNS--KIVLPN--CNHAMCLKCYREWRI-RSQSCPFCRDSLKR 194 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~--~~v~~~--CgH~FC~~Ci~~w~~-~~~~CP~CR~~l~~ 194 (247)
..+++..|+||++.+. ++...+ |||.||..|+..++. ....||.||.++..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3457789999999874 345554 999999999999875 46799999998873
No 39
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.17 E-value=6.4e-12 Score=101.78 Aligned_cols=50 Identities=30% Similarity=0.594 Sum_probs=44.6
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHhhcCC-ccccccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQ-SCPFCRDSLKR 194 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~-~CP~CR~~l~~ 194 (247)
.+++..|+||++.+.+|+.++|||.||..||..|+.... .||+||.++..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 345689999999999999999999999999999998654 89999998873
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=7.8e-12 Score=86.64 Aligned_cols=46 Identities=24% Similarity=0.676 Sum_probs=39.3
Q ss_pred CCccccccc-cCCcc----cccCcCCcccHHHHHHHhhc-CCcccccccccc
Q 025880 148 EEECGICME-TNSKI----VLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e-~~~~~----v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~ 193 (247)
+..|+||++ .+.++ +.++|||.||..|+.+|+.+ +..||+||.++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 568999999 77666 46799999999999999764 578999999886
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=1.6e-11 Score=92.70 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=46.3
Q ss_pred ccccCCccccccccCCcccccCcC-CcccHHHHHHHhhcCCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCN-HAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+..++..|+||++.+.+||.++|| |.||..||.+|+....+||+||.++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 345689999999999999999999 99999999999998899999999886
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.16 E-value=9.8e-12 Score=96.35 Aligned_cols=50 Identities=26% Similarity=0.541 Sum_probs=45.0
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhcCC-cccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQ-SCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~-~CP~CR~~l~ 193 (247)
..+++..|+||++.+.+|+.++|||.||..||.+|+..+. +||+||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 4456789999999999999999999999999999998765 9999999886
No 43
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.16 E-value=1.5e-11 Score=94.14 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=41.0
Q ss_pred cCCccccccccCCcc------------------cccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSKI------------------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~------------------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+..|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 467899999987743 44789999999999999999999999999865
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=3.4e-12 Score=98.29 Aligned_cols=49 Identities=39% Similarity=0.845 Sum_probs=44.2
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhc-CCccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~~ 194 (247)
.++..|+||++.+.+|+.++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 456789999999999999999999999999999976 6799999998863
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=1.3e-11 Score=95.23 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=44.0
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhc-CCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~ 193 (247)
.++..|+||++.+.+|+.++|||.||..||.+|+.. ...||.||.++.
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 356789999999999999999999999999999986 779999999886
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.12 E-value=1.3e-11 Score=100.87 Aligned_cols=48 Identities=27% Similarity=0.644 Sum_probs=43.2
Q ss_pred ccCCccccccccCCccccc-CcCCcccHHHHHHHhhc-CCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~ 193 (247)
..+..|+||++.+.+|+.+ +|||.||..||..|+.. ...||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3567899999999999876 99999999999999987 789999999885
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=97.56 Aligned_cols=50 Identities=20% Similarity=0.438 Sum_probs=44.8
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhcC-Ccccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~l~ 193 (247)
..+++..|+||++.+.+|+.++|||.||..||.+|+... ..||.||.++.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 456788999999999999999999999999999999865 49999999764
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.11 E-value=2.3e-11 Score=84.56 Aligned_cols=48 Identities=25% Similarity=0.669 Sum_probs=43.5
Q ss_pred cCCccccccccCCccccc--CcCCc-ccHHHHHHHhhcCCccccccccccc
Q 025880 147 REEECGICMETNSKIVLP--NCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~--~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
++.+|.||++...+++.+ ||||. ||..|+..|...+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 567899999999998876 99999 8999999999988999999998864
No 49
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.08 E-value=3.7e-11 Score=83.30 Aligned_cols=49 Identities=20% Similarity=0.588 Sum_probs=43.3
Q ss_pred ccCCccccccccCCccccc--CcCCc-ccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETNSKIVLP--NCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~--~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
+.+..|.||++...+++.+ ||||. ||..|+..|...+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3467899999998887766 99999 9999999999888999999998864
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=3e-11 Score=94.17 Aligned_cols=49 Identities=33% Similarity=0.818 Sum_probs=44.0
Q ss_pred ccCCccccccccCCcc-------cccCcCCcccHHHHHHHhhcCCccccccccccc
Q 025880 146 EREEECGICMETNSKI-------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
++...|+||++.+.++ +.++|||.||..|+.+|+..+++||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 4678899999988765 788999999999999999999999999998873
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=4.1e-11 Score=80.94 Aligned_cols=45 Identities=22% Similarity=0.520 Sum_probs=40.1
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+++..|+||++.+.+|+.++|||.||..|+..| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 356789999999999999999999999999773 579999999876
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=2.6e-11 Score=93.76 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=42.2
Q ss_pred ccCCccccccccCCccccc-CcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+++..|+||++.+.+|+.+ +|||.||..||..|+. ..||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 3578899999999999998 9999999999999997 89999999875
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=1.1e-10 Score=101.68 Aligned_cols=50 Identities=20% Similarity=0.088 Sum_probs=44.6
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhc-CCcccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR-SQSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~l~ 193 (247)
+......|+||++.+.+||.++|||+||..||.+|+.. ..+||+||.+++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34567899999999999999999999999999999986 445999999886
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.04 E-value=8.5e-11 Score=108.41 Aligned_cols=48 Identities=35% Similarity=0.928 Sum_probs=44.2
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhh-cCCccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~l~~ 194 (247)
....|+||++.+.+++.++|||.||..|+..|+. ...+||+||.++..
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3578999999999999999999999999999998 68899999998874
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.03 E-value=3.2e-11 Score=86.10 Aligned_cols=44 Identities=34% Similarity=0.815 Sum_probs=40.4
Q ss_pred cCCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
++..|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999999999999999999 999999998 899999998874
No 56
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.98 E-value=5.3e-11 Score=92.64 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=1.0
Q ss_pred cCCccccccccCCcc------------------cccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSKI------------------VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~------------------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+..|+||++.+..+ +.++|+|.||..||.+|+..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 457899999987642 33589999999999999999999999999865
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.97 E-value=4.2e-10 Score=93.66 Aligned_cols=51 Identities=18% Similarity=0.051 Sum_probs=45.5
Q ss_pred cccccCCccccccccCCcccccCcCCcccHHHHHHHhhcC-Ccccccccccc
Q 025880 143 ADIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 193 (247)
Q Consensus 143 ~~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~l~ 193 (247)
.+...+..|+||++.+.+||.++|||+||..||..|+..+ .+||+|+.++.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3456789999999999999999999999999999999763 57999999886
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.9e-10 Score=85.80 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=41.8
Q ss_pred ccCCccccccccCCcccccC-cCCcccHHHHHHHhhcC------Ccccc--cccc-cc
Q 025880 146 EREEECGICMETNSKIVLPN-CNHAMCLKCYREWRIRS------QSCPF--CRDS-LK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~-CgH~FC~~Ci~~w~~~~------~~CP~--CR~~-l~ 193 (247)
..+..|+||++.+.+||.++ |||.||..||..|+... .+||+ |+.. +.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 46789999999999999995 99999999999999753 49999 9865 54
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.95 E-value=2.4e-10 Score=93.74 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=44.9
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhcC-Ccccccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS-QSCPFCRDSLK 193 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~l~ 193 (247)
..+++..|+||++.+.+|+.++|||.||..|+.+|+..+ ..||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 456778999999999999999999999999999999764 59999999876
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.8e-10 Score=81.22 Aligned_cols=44 Identities=34% Similarity=0.827 Sum_probs=38.7
Q ss_pred cCCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
++..|+||++.+.+++.++|||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 35579999999999999999999 99999964 3799999998874
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=9.6e-10 Score=79.86 Aligned_cols=48 Identities=21% Similarity=0.644 Sum_probs=40.1
Q ss_pred ccCCccccccccCC--cccccCcC-----CcccHHHHHHHhhcC--Ccccccccccc
Q 025880 146 EREEECGICMETNS--KIVLPNCN-----HAMCLKCYREWRIRS--QSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~--~~v~~~Cg-----H~FC~~Ci~~w~~~~--~~CP~CR~~l~ 193 (247)
+++..|.||++.+. .+.++||+ |.||..||.+|+..+ .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 45678999998764 35667896 999999999999865 59999999886
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=76.37 Aligned_cols=46 Identities=30% Similarity=0.771 Sum_probs=40.6
Q ss_pred cccCCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCccccccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKR 194 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~ 194 (247)
.+++..|.||++...+++++||||. ||..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3457889999999999999999999 99999974 4799999998874
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.83 E-value=4.7e-10 Score=81.18 Aligned_cols=45 Identities=31% Similarity=0.745 Sum_probs=39.9
Q ss_pred cCCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCcccccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
++..|.||++...+++.+||||. ||..|+..| ..||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 45689999999999999999999 999999876 3999999998753
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=4.7e-09 Score=75.15 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=40.7
Q ss_pred ccCCccccccccCCcc-cccCcCCcccHHHHHHHhhcC--Cccccccccccc
Q 025880 146 EREEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLKR 194 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~~--~~CP~CR~~l~~ 194 (247)
+...+|+||.+.+... ....|+|.||..||.+|++.+ .+||+||.++..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3457899999988754 344899999999999999876 899999987763
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.64 E-value=9e-09 Score=90.08 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=42.4
Q ss_pred ccCCccccccccCCccccc-CcCCcccHHHHHHHhhcC--Ccccc--cccccc
Q 025880 146 EREEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRS--QSCPF--CRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~~--~~CP~--CR~~l~ 193 (247)
..+..|+||++.+.+||.. .|||+||..||..|+..+ ..||. ||..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 4678999999999999974 999999999999999754 58999 999775
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.61 E-value=1.2e-08 Score=70.28 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=42.3
Q ss_pred CCccccccccCCccccc-CcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNSKIVLP-NCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
...|+||++.+.+|+.. +|||.|+..||.+|+..+.+||+++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 36799999999999998 99999999999999988888999999886
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.61 E-value=4.7e-09 Score=95.71 Aligned_cols=46 Identities=30% Similarity=0.881 Sum_probs=41.4
Q ss_pred ccCCccccccccCCcccccCcCCc-ccHHHHHHHhhcCCcccccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHA-MCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
+++..|+||++.+..++.+||||. ||..|+..| ..||+||.++...
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 356889999999999999999999 999999988 7899999988743
No 68
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=4.6e-08 Score=72.46 Aligned_cols=45 Identities=20% Similarity=0.610 Sum_probs=36.9
Q ss_pred cCCccccccccCCcccc---cCcCCcccHHHHHHHhhc--------CCcccc--cccc
Q 025880 147 REEECGICMETNSKIVL---PNCNHAMCLKCYREWRIR--------SQSCPF--CRDS 191 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~---~~CgH~FC~~Ci~~w~~~--------~~~CP~--CR~~ 191 (247)
+..+|+||++.+..+.. .+|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46789999999887644 379999999999998863 248999 9987
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.47 E-value=3.6e-08 Score=89.22 Aligned_cols=48 Identities=27% Similarity=0.607 Sum_probs=38.8
Q ss_pred ccCCccccccccCCc-cc-------ccCcCCcccHHHHHHHhhcC-----------Ccccccccccc
Q 025880 146 EREEECGICMETNSK-IV-------LPNCNHAMCLKCYREWRIRS-----------QSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~-~v-------~~~CgH~FC~~Ci~~w~~~~-----------~~CP~CR~~l~ 193 (247)
+...+|+||++.+.. +. .++|||.||..|+.+|+.+. .+||+||++++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999987665 21 24799999999999999742 58999999887
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.35 E-value=2.9e-07 Score=63.03 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=38.8
Q ss_pred ccCCccccccccCCcccccCcC--C---cccHHHHHHHhhc--CCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCN--H---AMCLKCYREWRIR--SQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~Cg--H---~FC~~Ci~~w~~~--~~~CP~CR~~l~ 193 (247)
+++..|.||++....+...||. | .||..|+.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4567899999876666667765 4 7999999999964 579999998765
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.25 E-value=4e-07 Score=68.21 Aligned_cols=47 Identities=23% Similarity=0.531 Sum_probs=39.3
Q ss_pred ccccccccCCc-ccccCcCCcccHHHHHHHhh-cCCccccccccccccc
Q 025880 150 ECGICMETNSK-IVLPNCNHAMCLKCYREWRI-RSQSCPFCRDSLKRVN 196 (247)
Q Consensus 150 ~C~IC~e~~~~-~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~l~~~~ 196 (247)
.|.+|--++.. +...||+|.||.+|+..|.+ +.++||.|+.++.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 48888777664 57779999999999999985 5689999999988663
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.46 E-value=9.1e-05 Score=63.97 Aligned_cols=47 Identities=23% Similarity=0.489 Sum_probs=38.9
Q ss_pred cCCccccccccCCcc-cccCcCCcccHHHHHHHhhcC--Ccccccccccc
Q 025880 147 REEECGICMETNSKI-VLPNCNHAMCLKCYREWRIRS--QSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~-v~~~CgH~FC~~Ci~~w~~~~--~~CP~CR~~l~ 193 (247)
.-..|.||.+....+ ...+|+|.||..|+..|+... ..||.|+.+..
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 357899999987765 455699999999999999764 49999988655
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.88 E-value=0.0044 Score=45.64 Aligned_cols=33 Identities=18% Similarity=0.501 Sum_probs=26.8
Q ss_pred cCCcccccccc-CCcccc--cCcCCcccHHHHHHHh
Q 025880 147 REEECGICMET-NSKIVL--PNCNHAMCLKCYREWR 179 (247)
Q Consensus 147 ~~~~C~IC~e~-~~~~v~--~~CgH~FC~~Ci~~w~ 179 (247)
++..|+||.+. ..+++. +.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 35689999975 566666 8899999999999843
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.41 E-value=0.14 Score=51.99 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=46.2
Q ss_pred cccccCCccccccccCCcccccCcC-CcccHHHHHHHhhcCCcccccccccc
Q 025880 143 ADIEREEECGICMETNSKIVLPNCN-HAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 143 ~~~~~~~~C~IC~e~~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.+..++..|+|-.+.+.+||.++-| +.+-..+|.+|+..+.+||+=|.+++
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456789999999999999999998 58999999999998999999999887
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.29 E-value=0.043 Score=40.37 Aligned_cols=45 Identities=31% Similarity=0.696 Sum_probs=37.4
Q ss_pred cCCccccccccCCcccccCc-CCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSKIVLPNC-NHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~C-gH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.-..|-.|.-....- ..| .|..|.+|+...+..+..||+|..++.
T Consensus 27 G~~nCKsCWf~~k~L--V~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKGL--VECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSSE--EECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccCCe--eeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 457899998776633 345 699999999999999999999999886
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.54 E-value=1.3 Score=32.13 Aligned_cols=49 Identities=31% Similarity=0.731 Sum_probs=37.0
Q ss_pred cCCccccccccCCc-------ccccCcCCcccHHHHH-HHhhcCCcccccccccccc
Q 025880 147 REEECGICMETNSK-------IVLPNCNHAMCLKCYR-EWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 147 ~~~~C~IC~e~~~~-------~v~~~CgH~FC~~Ci~-~w~~~~~~CP~CR~~l~~~ 195 (247)
....|.||-+.+-. ...-.|+-..|..|+. +....++.||-|....++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 45789999987431 2334688889999998 4455789999999988764
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=86.80 E-value=0.43 Score=34.06 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=28.3
Q ss_pred ccCCccccccccCCcccccCc----CCcccHHHHHHHhhc
Q 025880 146 EREEECGICMETNSKIVLPNC----NHAMCLKCYREWRIR 181 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~C----gH~FC~~Ci~~w~~~ 181 (247)
.....|.+|.|..++.....| .|.||..|-+...++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 356789999999887544445 699999999988764
No 78
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.74 E-value=0.36 Score=33.02 Aligned_cols=46 Identities=17% Similarity=0.466 Sum_probs=33.3
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhcC----Cccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRS----QSCPFCRDSL 192 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~----~~CP~CR~~l 192 (247)
....|.||.+.-.-...-.|...||..|+...+... =.||.|+...
T Consensus 11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 456799998764433444789999999998776542 3899997643
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=79.66 E-value=0.66 Score=38.47 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=33.0
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhc----CCccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 192 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~l 192 (247)
..+..|.+|...-.-...-.|...||..|+.+-+.. .=.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356779999866443344478889999998765543 23899998643
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=79.23 E-value=1 Score=29.99 Aligned_cols=47 Identities=21% Similarity=0.586 Sum_probs=32.1
Q ss_pred ccccCCccccccccCCcccccCcCCcccHHHHHHHhhc----CCccccccc
Q 025880 144 DIEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 190 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~ 190 (247)
+...+..|.+|...-.-...-.|...||..|+..-+.. .=.||.|+.
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cCCCCCCCccCCCCCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34467789999875433334468888999999864332 238999864
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.59 E-value=2.1 Score=34.66 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=32.5
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhc----CCccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 192 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~l 192 (247)
.+..|.+|.+.-.-...-.|...||..|+.+-+.. .=.||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999876543444468888999998665543 23799998643
No 82
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=75.60 E-value=2.5 Score=32.80 Aligned_cols=60 Identities=20% Similarity=0.489 Sum_probs=35.1
Q ss_pred ccCCccccccccCC-----cccccCcCCcccHHHHHHHhhc----CCcccccccccccccCCCcccccC
Q 025880 146 EREEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSLKRVNSGDLWVYMD 205 (247)
Q Consensus 146 ~~~~~C~IC~e~~~-----~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~l~~~~~~~~~v~~~ 205 (247)
..+..|.+|...+. ......|.|.+|.+|-..-... .-.|-+|+..-.....+--|+...
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG~Wf~~~ 121 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSGAWFFKG 121 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTSHHHHTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHHHHHHHhhhHHHHhc
Confidence 46788999999873 2355678999998885432111 126777765432222333354443
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=73.90 E-value=0.79 Score=30.59 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=30.9
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhc----CCcccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 191 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~ 191 (247)
..+..|.+|.+.-.-...-.|...||..|+..-+.. .=.||.|+..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456789999875433334468888999998753332 2379999653
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.64 E-value=0.49 Score=30.98 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=30.1
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHhhc----CCccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 190 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~ 190 (247)
...+..|.+|...-.-...-.|...||..|+.+-+.. .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3467789999986433344478888999998753332 125777753
No 85
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=71.70 E-value=4.8 Score=28.91 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=23.6
Q ss_pred cccCCccccccccCCc---ccccCcCCcccHHHHHHH
Q 025880 145 IEREEECGICMETNSK---IVLPNCNHAMCLKCYREW 178 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w 178 (247)
...+..|.||-.-... |-. -|+-.||..|+++-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCCcccCccccccccceeccc-cccccccHhhcccc
Confidence 3467899999743322 222 38999999999986
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.23 E-value=6 Score=31.02 Aligned_cols=46 Identities=26% Similarity=0.490 Sum_probs=33.5
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHhh-----------cCCccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRI-----------RSQSCPFCRD 190 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~-----------~~~~CP~CR~ 190 (247)
...+..|.+|.+--.-...-.|-..||..|+.+-+. ..=.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345788999998765444457889999999986542 1237999964
No 87
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=70.72 E-value=6.2 Score=30.47 Aligned_cols=46 Identities=26% Similarity=0.518 Sum_probs=31.9
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHh------h-----cCCccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWR------I-----RSQSCPFCRD 190 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~------~-----~~~~CP~CR~ 190 (247)
...+..|.+|.+--.-.-.-.|-..||..|+.+-+ . ..=.|++|+.
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34567799999765543444788999999998642 1 1238999964
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.84 E-value=12 Score=28.51 Aligned_cols=31 Identities=19% Similarity=0.486 Sum_probs=23.1
Q ss_pred cCCccccccccCCcc----cccCcCCcccHHHHHH
Q 025880 147 REEECGICMETNSKI----VLPNCNHAMCLKCYRE 177 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----v~~~CgH~FC~~Ci~~ 177 (247)
....|.+|...|... ..-.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 346799999887632 4447999999999643
No 89
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=69.31 E-value=5.2 Score=36.49 Aligned_cols=46 Identities=17% Similarity=0.502 Sum_probs=33.1
Q ss_pred cccCCccccccccCCccccc--CcCCcccHHHHHHHhhcC----------Cccccccc
Q 025880 145 IEREEECGICMETNSKIVLP--NCNHAMCLKCYREWRIRS----------QSCPFCRD 190 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~--~CgH~FC~~Ci~~w~~~~----------~~CP~CR~ 190 (247)
...+..|.+|-+-..-...- +|...||..||...+... =.|=+|.-
T Consensus 90 DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34567899998865544333 799999999999988542 26777753
No 90
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=69.01 E-value=3.2 Score=27.68 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=29.5
Q ss_pred CccccccccCCcc---cccCcCCcccHHHHHHHhhcCCccccc
Q 025880 149 EECGICMETNSKI---VLPNCNHAMCLKCYREWRIRSQSCPFC 188 (247)
Q Consensus 149 ~~C~IC~e~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~C 188 (247)
..|--|...+.+. ..+.|++.||.+|=.=....-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4588888877543 467899999999964444455789987
No 91
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=65.10 E-value=4.7 Score=31.98 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=31.2
Q ss_pred cCCccccccccCC-----cccccCcCCcccHHHHHHHhhc--CCcccccccc
Q 025880 147 REEECGICMETNS-----KIVLPNCNHAMCLKCYREWRIR--SQSCPFCRDS 191 (247)
Q Consensus 147 ~~~~C~IC~e~~~-----~~v~~~CgH~FC~~Ci~~w~~~--~~~CP~CR~~ 191 (247)
.+..|.+|...+. ......|.|.+|..|-. |... .-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5789999999753 23666899999999962 3322 2378888764
No 92
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=64.59 E-value=7.1 Score=31.23 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=26.6
Q ss_pred ccCCccccccccCCccccc--CcCCcccHHHHHHHhhc
Q 025880 146 EREEECGICMETNSKIVLP--NCNHAMCLKCYREWRIR 181 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~--~CgH~FC~~Ci~~w~~~ 181 (247)
..+..|.||-+--.-...- +|...||..||...+..
T Consensus 77 G~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 3567899998765333222 68899999999988765
No 93
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=64.52 E-value=0.6 Score=32.97 Aligned_cols=20 Identities=25% Similarity=0.826 Sum_probs=16.8
Q ss_pred CcCCcccHHHHHHHhhcCCccc
Q 025880 165 NCNHAMCLKCYREWRIRSQSCP 186 (247)
Q Consensus 165 ~CgH~FC~~Ci~~w~~~~~~CP 186 (247)
.|||.||..|-..|.. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999999876 5663
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=59.62 E-value=1.5 Score=29.60 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=30.5
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhc----CCccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 190 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~ 190 (247)
..+..|.||.+.-.-...-.|...||..|+.+-+.. .=.||.|..
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356789999976443344468888999998753332 237999964
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=58.93 E-value=1.8 Score=28.57 Aligned_cols=46 Identities=22% Similarity=0.578 Sum_probs=31.1
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhc----CCccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDSL 192 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~l 192 (247)
.+..|.+|.....-...-.|...||..|+.+-+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46679999876433344478888999998753332 23788886644
No 96
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=58.08 E-value=1.6 Score=33.32 Aligned_cols=46 Identities=17% Similarity=0.472 Sum_probs=30.3
Q ss_pred cCCccccccccCCcc----cccCcCCcccHHHHHHHhhcCCccccccccc
Q 025880 147 REEECGICMETNSKI----VLPNCNHAMCLKCYREWRIRSQSCPFCRDSL 192 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l 192 (247)
....|..|...|... ..-.||..||..|-.........|-.|-..+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 346799999887642 4458999999999765544466788886543
No 97
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=56.80 E-value=2.7 Score=34.31 Aligned_cols=44 Identities=18% Similarity=0.465 Sum_probs=30.6
Q ss_pred CCccccccccCCcccccCcCCcccHHHHHHHhhc----CCcccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 191 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~ 191 (247)
+..|.+|.+...-...-.|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999976544444568888999998653332 2379999864
No 98
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.67 E-value=6.4 Score=26.94 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=22.0
Q ss_pred CCccccccccCCcc----cccCcCCcccHHHHH
Q 025880 148 EEECGICMETNSKI----VLPNCNHAMCLKCYR 176 (247)
Q Consensus 148 ~~~C~IC~e~~~~~----v~~~CgH~FC~~Ci~ 176 (247)
+..|.+|...|... ..-.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 45899999887632 334799999999964
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=55.50 E-value=3.3 Score=29.88 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=32.0
Q ss_pred cccCCccccccccCCcccccCcCCcccHHHHHHHhhc----CCcccccccc
Q 025880 145 IEREEECGICMETNSKIVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 191 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~ 191 (247)
.+.+..|.+|...-.-...-.|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456789999976543334467788999998664433 2379999753
No 100
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=54.50 E-value=6.1 Score=28.24 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=24.0
Q ss_pred cCCccccccccCCc----ccccCcCCcccHHHHHHH
Q 025880 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREW 178 (247)
Q Consensus 147 ~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w 178 (247)
+...|.+|...|.. -..-.||++||..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45679999987763 244579999999997543
No 101
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=54.20 E-value=3.2 Score=28.48 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=31.0
Q ss_pred cCCccccccccCCcc---cccCcCCcccHHHHHHHhhc----CCcccccccccc
Q 025880 147 REEECGICMETNSKI---VLPNCNHAMCLKCYREWRIR----SQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~---v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~l~ 193 (247)
+...|.||....... ..-.|.-.||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 445699998764321 22368888999998643322 347999987654
No 102
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=54.13 E-value=6 Score=26.97 Aligned_cols=33 Identities=27% Similarity=0.653 Sum_probs=25.3
Q ss_pred ccCCccccccccCCcccccCc-CCcccHHHHHHHh
Q 025880 146 EREEECGICMETNSKIVLPNC-NHAMCLKCYREWR 179 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~C-gH~FC~~Ci~~w~ 179 (247)
++..-|.||.+.-. .....| |-.||..|.++-.
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 45567999999844 556678 7889999987754
No 103
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.33 E-value=2.8 Score=27.90 Aligned_cols=34 Identities=32% Similarity=0.684 Sum_probs=23.0
Q ss_pred CCccccccccCCcc------cccC--cCCcccHHHHHHHhhc
Q 025880 148 EEECGICMETNSKI------VLPN--CNHAMCLKCYREWRIR 181 (247)
Q Consensus 148 ~~~C~IC~e~~~~~------v~~~--CgH~FC~~Ci~~w~~~ 181 (247)
...|+-|.-.+++. .... |+|.||..|..+|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 35688888766642 2233 8888888888877654
No 104
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.73 E-value=5.5 Score=33.36 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=24.4
Q ss_pred ccCCccccccccCCc----ccccCcCCcccHHHHHH
Q 025880 146 EREEECGICMETNSK----IVLPNCNHAMCLKCYRE 177 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~ 177 (247)
.+...|.+|...|.- -..-.||+.||..|-..
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 345789999987763 24457999999999754
No 105
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=51.25 E-value=7.3 Score=27.41 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=23.5
Q ss_pred cCCccccccccCCcc----cccCcCCcccHHHHHH
Q 025880 147 REEECGICMETNSKI----VLPNCNHAMCLKCYRE 177 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----v~~~CgH~FC~~Ci~~ 177 (247)
+...|.+|...|... ..-.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 456899999887642 3447999999999654
No 106
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=50.71 E-value=6.9 Score=27.41 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=23.2
Q ss_pred cCCccccccccCCcc----cccCcCCcccHHHHHH
Q 025880 147 REEECGICMETNSKI----VLPNCNHAMCLKCYRE 177 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----v~~~CgH~FC~~Ci~~ 177 (247)
+...|.+|...|... ..-.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345799999887632 3447999999999754
No 107
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=50.06 E-value=6.2 Score=24.80 Aligned_cols=41 Identities=29% Similarity=0.702 Sum_probs=25.7
Q ss_pred ccccccccCCc---ccccCcCCcccHHHHHHHhhc----CCccccccc
Q 025880 150 ECGICMETNSK---IVLPNCNHAMCLKCYREWRIR----SQSCPFCRD 190 (247)
Q Consensus 150 ~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~ 190 (247)
.|.||...-.. ..--.|...||..|+.+=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888765332 223368888999999643322 226888864
No 108
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=49.31 E-value=4.8 Score=28.78 Aligned_cols=47 Identities=28% Similarity=0.582 Sum_probs=30.9
Q ss_pred ccCCccccccccC--Cc---ccccCcCCcccHHHHHHHhh--cCCccccccccc
Q 025880 146 EREEECGICMETN--SK---IVLPNCNHAMCLKCYREWRI--RSQSCPFCRDSL 192 (247)
Q Consensus 146 ~~~~~C~IC~e~~--~~---~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~l 192 (247)
+.+..|.||.... .. ...-.|.-.||..|+..-.. ..=.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4668899999764 11 23336888899999964322 133789997543
No 109
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=49.25 E-value=3.5 Score=30.76 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=18.3
Q ss_pred cccccCcCCcccHHHHHHHhhcCCcccccccc
Q 025880 160 KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDS 191 (247)
Q Consensus 160 ~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~ 191 (247)
++..-.||+.|+ .-+.....||.|+..
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 445668999992 123345799999864
No 110
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.98 E-value=6.5 Score=32.60 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=24.0
Q ss_pred ccCCccccccccCCc----ccccCcCCcccHHHHHH
Q 025880 146 EREEECGICMETNSK----IVLPNCNHAMCLKCYRE 177 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~ 177 (247)
.++..|.+|...|.- -..-.||+.||..|...
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 346799999988763 24457999999999643
No 111
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=48.80 E-value=4.5 Score=29.84 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=25.9
Q ss_pred ccCCccccccccCCc---ccccCcCCcccHHHHHHHhh
Q 025880 146 EREEECGICMETNSK---IVLPNCNHAMCLKCYREWRI 180 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~ 180 (247)
..+..|.||.+.-.. ..-..|+..||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 457789999876543 34457899999999976553
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.33 E-value=7.8 Score=27.20 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=22.4
Q ss_pred cCCccccccccCCcc----cccCcCCcccHHHHH
Q 025880 147 REEECGICMETNSKI----VLPNCNHAMCLKCYR 176 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----v~~~CgH~FC~~Ci~ 176 (247)
+...|.+|...|... ..-.||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 446799999887632 334799999999953
No 113
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.28 E-value=7 Score=28.85 Aligned_cols=13 Identities=23% Similarity=0.892 Sum_probs=11.2
Q ss_pred cccHHHHHHHhhc
Q 025880 169 AMCLKCYREWRIR 181 (247)
Q Consensus 169 ~FC~~Ci~~w~~~ 181 (247)
.||..|+.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 114
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=48.22 E-value=7 Score=28.79 Aligned_cols=12 Identities=25% Similarity=1.054 Sum_probs=10.9
Q ss_pred cccHHHHHHHhh
Q 025880 169 AMCLKCYREWRI 180 (247)
Q Consensus 169 ~FC~~Ci~~w~~ 180 (247)
.||..|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 115
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.55 E-value=13 Score=33.61 Aligned_cols=47 Identities=19% Similarity=0.489 Sum_probs=32.2
Q ss_pred cCCccccccccCCcccc-cCcCCcccHHH--HHHHhhc--CCcccccccccc
Q 025880 147 REEECGICMETNSKIVL-PNCNHAMCLKC--YREWRIR--SQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~-~~CgH~FC~~C--i~~w~~~--~~~CP~CR~~l~ 193 (247)
-...|++-...+..|+. ..|.|.-|.+- +.....+ .-.||+|...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 35789998888887744 47999966654 3333322 359999988664
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=45.13 E-value=9.4 Score=27.21 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=30.7
Q ss_pred cCCccccccccCCcc----cccCcCCcccHHHHHHHhh-------cCCcccccccccc
Q 025880 147 REEECGICMETNSKI----VLPNCNHAMCLKCYREWRI-------RSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----v~~~CgH~FC~~Ci~~w~~-------~~~~CP~CR~~l~ 193 (247)
+...|.+|...|... ..-.||++||..|...... ....|-.|-..+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 456799999887642 3457999999999754321 1246666655443
No 117
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.09 E-value=2.6 Score=30.45 Aligned_cols=48 Identities=15% Similarity=0.343 Sum_probs=31.0
Q ss_pred ccccCCccccccccCCc---ccccCcCCcccHHHHHHHhhc----CCcccccccc
Q 025880 144 DIEREEECGICMETNSK---IVLPNCNHAMCLKCYREWRIR----SQSCPFCRDS 191 (247)
Q Consensus 144 ~~~~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~----~~~CP~CR~~ 191 (247)
+..++..|.||...-.. ...-.|...||..|+.+=+.. .=.||.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 44566789999876432 222368888999998643322 2269999754
No 118
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=44.52 E-value=14 Score=33.32 Aligned_cols=47 Identities=17% Similarity=0.385 Sum_probs=32.2
Q ss_pred cCCccccccccCCcccc-cCcCCcccHHH--HHHHhhc--CCcccccccccc
Q 025880 147 REEECGICMETNSKIVL-PNCNHAMCLKC--YREWRIR--SQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~-~~CgH~FC~~C--i~~w~~~--~~~CP~CR~~l~ 193 (247)
-...|++-...+..|+. ..|.|.-|.+- +.....+ .-.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 35689998888887744 57999966543 3333332 359999998764
No 119
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=44.44 E-value=2 Score=38.12 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=34.6
Q ss_pred ccCCccccccccCCccccc----CcC--CcccHHHHHHHhhcCCcccccccc
Q 025880 146 EREEECGICMETNSKIVLP----NCN--HAMCLKCYREWRIRSQSCPFCRDS 191 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~----~Cg--H~FC~~Ci~~w~~~~~~CP~CR~~ 191 (247)
.....|++|-....-.++. .=| |.+|..|-..|......||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4568999999875543322 234 568999999999999999999765
No 120
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.50 E-value=13 Score=27.48 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=34.4
Q ss_pred CCccccccccCC---cccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNS---KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
-+.|..|...+. ......=|..||..|..+-+.....|..|..+|.
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 367888888775 2344456788999999887665558999998886
No 121
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=40.45 E-value=5.1 Score=26.50 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=29.6
Q ss_pred ccCCccccccccCCc-c---cccCcCCcccHHHHHHHhh-----cCCcccccccc
Q 025880 146 EREEECGICMETNSK-I---VLPNCNHAMCLKCYREWRI-----RSQSCPFCRDS 191 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~-~---v~~~CgH~FC~~Ci~~w~~-----~~~~CP~CR~~ 191 (247)
++...|+||.....+ . ..-.|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 356779999876532 1 2226888899999853221 23589999753
No 122
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=39.22 E-value=6.3 Score=35.60 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred cCCccccccccCCc----ccccCcCCcccHHHHHHHh
Q 025880 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREWR 179 (247)
Q Consensus 147 ~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~ 179 (247)
....|.+|...|.. -..-.||+.||..|-....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 35679999987763 2455799999999987543
No 123
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=38.66 E-value=9.9 Score=26.01 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=29.5
Q ss_pred cccCCccccccccC--C-c--ccccCcCCcccHHHHHHHhh--cCCccccccc
Q 025880 145 IEREEECGICMETN--S-K--IVLPNCNHAMCLKCYREWRI--RSQSCPFCRD 190 (247)
Q Consensus 145 ~~~~~~C~IC~e~~--~-~--~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~ 190 (247)
...+..|.||.+.. . . ...-.|.-.||..|+..-.. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34678899998753 1 1 22337888899999864221 1237888864
No 124
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=36.81 E-value=2.7 Score=29.84 Aligned_cols=28 Identities=29% Similarity=0.944 Sum_probs=19.1
Q ss_pred cccCcCCcccHHHHHHHhhc--CCcccccc
Q 025880 162 VLPNCNHAMCLKCYREWRIR--SQSCPFCR 189 (247)
Q Consensus 162 v~~~CgH~FC~~Ci~~w~~~--~~~CP~CR 189 (247)
..+.|++.||..|-..|-.. ..+|..-+
T Consensus 45 ~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~ 74 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQWEEQHRGRSCEDFQ 74 (86)
T ss_dssp ECTTTCCEECSSSCSBCCTTTTTSCHHHHH
T ss_pred EeCCCCCccccccCCchhhcCCCCChHHHH
Confidence 44469999999999998322 23565443
No 125
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=33.66 E-value=19 Score=24.57 Aligned_cols=44 Identities=18% Similarity=0.488 Sum_probs=26.5
Q ss_pred ccCCccccccccCCccccc--C--cC-CcccHHHHHHHhhc----CCccccccccc
Q 025880 146 EREEECGICMETNSKIVLP--N--CN-HAMCLKCYREWRIR----SQSCPFCRDSL 192 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~--~--Cg-H~FC~~Ci~~w~~~----~~~CP~CR~~l 192 (247)
.+...| ||........+. . |. ..||..|+. +.. .-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345567 898754322111 3 55 589999986 222 24899997643
No 126
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.26 E-value=10 Score=27.55 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=25.6
Q ss_pred CccccccccCCcc---cccCcCCcccHHHHHHHhhc---CCccccccc
Q 025880 149 EECGICMETNSKI---VLPNCNHAMCLKCYREWRIR---SQSCPFCRD 190 (247)
Q Consensus 149 ~~C~IC~e~~~~~---v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~ 190 (247)
..| ||....... ..-.|.-.||..|+..-... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 456 787654433 22367888999998542221 348999963
No 127
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.40 E-value=21 Score=25.71 Aligned_cols=43 Identities=19% Similarity=0.499 Sum_probs=26.0
Q ss_pred cCCccccccccCCcccc--cC--cC-CcccHHHHHHHhhc----CCccccccccc
Q 025880 147 REEECGICMETNSKIVL--PN--CN-HAMCLKCYREWRIR----SQSCPFCRDSL 192 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~--~~--Cg-H~FC~~Ci~~w~~~----~~~CP~CR~~l 192 (247)
+...| ||........+ -. |. ..||..|+. +.. .-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44556 99885432211 13 55 579999986 222 34899997643
No 128
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.19 E-value=6.1 Score=28.15 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=32.1
Q ss_pred ccCCccccccccCC---cc--cccCcCCcccHHHHHHHhh--------cCCcccccccccc
Q 025880 146 EREEECGICMETNS---KI--VLPNCNHAMCLKCYREWRI--------RSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~---~~--v~~~CgH~FC~~Ci~~w~~--------~~~~CP~CR~~l~ 193 (247)
+.+..|.+|...-. .. ..-.|...||..|+.+-+. ..=.||.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 35678999997633 22 2236888899999875433 1238999976554
No 129
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.14 E-value=15 Score=24.23 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=29.9
Q ss_pred ccCCccccccccCC---c--ccccCcCCcccHHHHHHHhh-------cCCcccccccc
Q 025880 146 EREEECGICMETNS---K--IVLPNCNHAMCLKCYREWRI-------RSQSCPFCRDS 191 (247)
Q Consensus 146 ~~~~~C~IC~e~~~---~--~v~~~CgH~FC~~Ci~~w~~-------~~~~CP~CR~~ 191 (247)
..+..|.||..... . ...-.|.-.||..|+..-+. ..=.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45678999997632 1 23347888899999875321 22378888653
No 130
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=29.92 E-value=26 Score=25.86 Aligned_cols=47 Identities=13% Similarity=0.301 Sum_probs=33.7
Q ss_pred cCCccccccccCCc---ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+-+.|..|...+.. .....=|..+|..|..+-+.....|..|..++.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 34778888877642 333456788999999876654458999998875
No 131
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.59 E-value=27 Score=23.49 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=29.2
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
....|.-|-+.+...++..-+..||..| ..|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 4568999998877655555677788777 47888988775
No 132
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.48 E-value=5.1 Score=26.77 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=19.8
Q ss_pred ccCCcccccccc-CCcc---cccCcCCcccHHHHHHHh
Q 025880 146 EREEECGICMET-NSKI---VLPNCNHAMCLKCYREWR 179 (247)
Q Consensus 146 ~~~~~C~IC~e~-~~~~---v~~~CgH~FC~~Ci~~w~ 179 (247)
.+...|.||... |.++ ...-|.-.||..|-..|-
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVS 44 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEE
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEee
Confidence 356789999874 4443 222345556666654443
No 133
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=28.91 E-value=29 Score=25.64 Aligned_cols=46 Identities=20% Similarity=0.414 Sum_probs=27.1
Q ss_pred cccCCccccccccCCccccc--CcCCcccHHHHHHHhhc----CCccccccccc
Q 025880 145 IEREEECGICMETNSKIVLP--NCNHAMCLKCYREWRIR----SQSCPFCRDSL 192 (247)
Q Consensus 145 ~~~~~~C~IC~e~~~~~v~~--~CgH~FC~~Ci~~w~~~----~~~CP~CR~~l 192 (247)
...+..|.+|.+.-.-...- .|-..||..|+. +.. .=.||.|+..+
T Consensus 12 ~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCCCCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 34677899998542211111 476789999986 332 12577665444
No 134
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.48 E-value=32 Score=22.82 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=25.1
Q ss_pred CccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 149 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
..|+-|...+...++..-+..||..| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 46888887766555555666777766 46777777664
No 135
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.31 E-value=34 Score=23.58 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=29.5
Q ss_pred ccCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 146 EREEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
.....|.-|.+.+...++..-+..||..| ..|-.|..+|.
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 62 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLK 62 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCC
Confidence 34567999998877655555677788777 57888988775
No 136
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.01 E-value=51 Score=22.18 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
...|+-|.+.+....+..-+..||..| ..|..|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccC
Confidence 467999998777655555677777777 57889988876
No 137
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.67 E-value=29 Score=22.60 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=25.7
Q ss_pred CCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
...|..|-+.+...++..-+..||..| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLA 42 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCS
T ss_pred CCcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCC
Confidence 456888888766544444566667666 46788887776
No 138
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.62 E-value=20 Score=28.68 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCccccccccCCc---ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNSK---IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
-+.|..|...+.. .....=|..||..|..+-+.....|+.|..++.
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccc
Confidence 4667777666543 333345677888888765543336888887775
No 139
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.17 E-value=23 Score=24.49 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=28.9
Q ss_pred cCCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
....|+.|-+.+....+..-+..||..| ..|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCC
Confidence 3467999998876655555677777777 57888988776
No 140
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.79 E-value=42 Score=21.77 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCccccccccCC--cccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNS--KIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~--~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
...|.-|.+.+. ..++..-+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCC
Confidence 356888988777 344445677777777 46888887775
No 141
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.54 E-value=37 Score=22.77 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=26.9
Q ss_pred CccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 149 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
..|+.|.+.+....+..-+..||..| ..|..|..+|.
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccC
Confidence 46888988777655555677777766 57888888775
No 142
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=23.82 E-value=78 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.575 Sum_probs=20.6
Q ss_pred cCCccccccccCC-----c----ccccCcCCcccHHHHH
Q 025880 147 REEECGICMETNS-----K----IVLPNCNHAMCLKCYR 176 (247)
Q Consensus 147 ~~~~C~IC~e~~~-----~----~v~~~CgH~FC~~Ci~ 176 (247)
....|.+|..... . ..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3457999986531 1 1334799999999994
No 143
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.80 E-value=28 Score=22.35 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=25.9
Q ss_pred CCccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
...|+.|.+.+....+..-+..||..| ..|..|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEecceEEEECccccccCc--------CEECCCCCCCC
Confidence 346888888766544445566677766 56888887775
No 144
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=23.50 E-value=13 Score=25.22 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=24.1
Q ss_pred ccccccccCCccccc---CcCCcccHHHHHHHhhc-----CCccccccc
Q 025880 150 ECGICMETNSKIVLP---NCNHAMCLKCYREWRIR-----SQSCPFCRD 190 (247)
Q Consensus 150 ~C~IC~e~~~~~v~~---~CgH~FC~~Ci~~w~~~-----~~~CP~CR~ 190 (247)
.|.||........++ .|...||..|+.+=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777543332222 57788999998743321 226777753
No 145
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.16 E-value=15 Score=24.01 Aligned_cols=41 Identities=20% Similarity=0.515 Sum_probs=24.1
Q ss_pred cCCccccccccCCcccc--cC--cC-CcccHHHHHHHhhc----CCccccccc
Q 025880 147 REEECGICMETNSKIVL--PN--CN-HAMCLKCYREWRIR----SQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~--~~--Cg-H~FC~~Ci~~w~~~----~~~CP~CR~ 190 (247)
+..-| ||........+ -. |. ..||..|+. +.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556 89875432211 13 65 589999986 221 237888864
No 146
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.63 E-value=17 Score=21.37 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=6.6
Q ss_pred CccccccccCCc
Q 025880 149 EECGICMETNSK 160 (247)
Q Consensus 149 ~~C~IC~e~~~~ 160 (247)
..|++|+..+..
T Consensus 6 FiCP~C~~~l~s 17 (34)
T 3mjh_B 6 FICPQCMKSLGS 17 (34)
T ss_dssp EECTTTCCEESS
T ss_pred cCCcHHHHHcCC
Confidence 556666655443
No 147
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.57 E-value=26 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=18.1
Q ss_pred cccCcCCcccHHHHHHHhhcCCcccccccccccc
Q 025880 162 VLPNCNHAMCLKCYREWRIRSQSCPFCRDSLKRV 195 (247)
Q Consensus 162 v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~~~ 195 (247)
....|||.|=.. .....||.|..++.++
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEEEC
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcceeC
Confidence 455688877432 2235899999887654
No 148
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=22.53 E-value=16 Score=24.00 Aligned_cols=41 Identities=20% Similarity=0.532 Sum_probs=23.7
Q ss_pred cCCccccccccCCccccc--C--cC-CcccHHHHHHHhhc----CCccccccc
Q 025880 147 REEECGICMETNSKIVLP--N--CN-HAMCLKCYREWRIR----SQSCPFCRD 190 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~v~~--~--Cg-H~FC~~Ci~~w~~~----~~~CP~CR~ 190 (247)
+...| ||........+. . |. ..||..|+. +.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 898754322111 3 54 579999986 222 237888854
No 149
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.49 E-value=41 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=20.2
Q ss_pred ccCCccccccccCCcc----ccc-CcCCcccHHHHH
Q 025880 146 EREEECGICMETNSKI----VLP-NCNHAMCLKCYR 176 (247)
Q Consensus 146 ~~~~~C~IC~e~~~~~----v~~-~CgH~FC~~Ci~ 176 (247)
+....|++|....... ..- .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3456899999875432 122 688889999983
No 150
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.18 E-value=37 Score=21.98 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=24.1
Q ss_pred CccccccccCCcccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 149 EECGICMETNSKIVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 149 ~~C~IC~e~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
..|..|.+.+....+..-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCC
Confidence 46888877666544444566666666 46777877764
No 151
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.03 E-value=40 Score=22.01 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCccccccccCCc----ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 148 EEECGICMETNSK----IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 148 ~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
...|.-|-+.+.. .++..-+..||..| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCC
Confidence 3568888887763 34444577777777 47888887775
No 152
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=21.29 E-value=33 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.3
Q ss_pred CCccccccccCCcccccCcCCcccH
Q 025880 148 EEECGICMETNSKIVLPNCNHAMCL 172 (247)
Q Consensus 148 ~~~C~IC~e~~~~~v~~~CgH~FC~ 172 (247)
...|..|......-+.+.|||.+|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4679999987666678889999984
No 153
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=20.63 E-value=18 Score=28.50 Aligned_cols=44 Identities=23% Similarity=0.526 Sum_probs=28.5
Q ss_pred cCCccccccccCCc----ccccCcCCcccHHHHHHHh-----hcCCcccccccc
Q 025880 147 REEECGICMETNSK----IVLPNCNHAMCLKCYREWR-----IRSQSCPFCRDS 191 (247)
Q Consensus 147 ~~~~C~IC~e~~~~----~v~~~CgH~FC~~Ci~~w~-----~~~~~CP~CR~~ 191 (247)
+...| +|...... ...-.|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 99876431 1223688889999984211 124589999864
No 154
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=20.42 E-value=33 Score=33.95 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=32.9
Q ss_pred cCCccccccccCCcc----------cccCcCCcc--------------------cHHHHHHHhhc--------CCccccc
Q 025880 147 REEECGICMETNSKI----------VLPNCNHAM--------------------CLKCYREWRIR--------SQSCPFC 188 (247)
Q Consensus 147 ~~~~C~IC~e~~~~~----------v~~~CgH~F--------------------C~~Ci~~w~~~--------~~~CP~C 188 (247)
+--.|.-|+.++.+| -.++||-.| |..|-.++-.. ...||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 456899998764432 456777665 99999988642 2599999
Q ss_pred ccccc
Q 025880 189 RDSLK 193 (247)
Q Consensus 189 R~~l~ 193 (247)
-=.+.
T Consensus 185 GP~l~ 189 (772)
T 4g9i_A 185 GPSYR 189 (772)
T ss_dssp SCCEE
T ss_pred CceEE
Confidence 65554
No 155
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.13 E-value=59 Score=23.71 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=32.2
Q ss_pred cCCccccccccCCc-ccccCcCCcccHHHHHHHhhcCCcccccccccc
Q 025880 147 REEECGICMETNSK-IVLPNCNHAMCLKCYREWRIRSQSCPFCRDSLK 193 (247)
Q Consensus 147 ~~~~C~IC~e~~~~-~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~l~ 193 (247)
+-..|..|...+.. .....=|..+|..|..+- ....|+.|..++.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 34678888877654 233446788999998653 4578999998886
Done!