BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025883
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H4P|A Chain A, Crystal Structure Of Exo-1,3-Beta Glucanse From
           Saccharomyces Cerevisiae
 pdb|1H4P|B Chain B, Crystal Structure Of Exo-1,3-Beta Glucanse From
           Saccharomyces Cerevisiae
          Length = 408

 Score = 27.7 bits (60), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 135 SLMKLPVFGWGFHILE---FISVERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEG---T 188
           +L+++P+  W F IL+   ++S      + E  + Q +   RN +  +W+ +        
Sbjct: 88  NLVRIPIGYWAFQILDDDPYVS-----GLQESYLDQAIGWARNNSLKVWVDLHGAAGSQN 142

Query: 189 DFTEEKRNRSQKFAADVGLPVLTNVL 214
            F       S KF  D  L V  NVL
Sbjct: 143 GFDNSGLRDSYKFLEDSNLAVTINVL 168


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.333    0.145    0.483 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,056,496
Number of Sequences: 62578
Number of extensions: 267677
Number of successful extensions: 560
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 1
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.9 bits)