Query 025883
Match_columns 247
No_of_seqs 184 out of 1954
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 19:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.8 6.1E-19 2.1E-23 152.8 7.5 120 93-214 125-275 (367)
2 2lnd_A De novo designed protei 65.7 12 0.0004 24.9 4.7 43 162-208 37-79 (112)
3 3p8k_A Hydrolase, carbon-nitro 41.2 20 0.00067 29.4 3.4 44 165-210 42-99 (281)
4 2e11_A Hydrolase; dimethylarse 35.5 30 0.001 27.8 3.6 34 177-210 34-80 (266)
5 1f89_A 32.5 kDa protein YLR351 35.4 38 0.0013 27.6 4.3 46 164-211 31-96 (291)
6 3ivz_A Nitrilase; alpha-beta s 32.7 18 0.00062 29.1 1.8 34 177-210 33-84 (262)
7 2w1v_A Nitrilase-2, nitrilase 28.2 33 0.0011 27.8 2.6 35 177-211 34-82 (276)
8 1vli_A Spore coat polysacchari 25.2 1.2E+02 0.0042 26.2 5.8 96 127-228 136-238 (385)
9 1uf5_A N-carbamyl-D-amino acid 24.9 35 0.0012 28.0 2.2 34 177-210 37-92 (303)
10 3hkx_A Amidase; alpha-beta-BET 23.5 26 0.0009 28.6 1.2 34 177-210 52-100 (283)
11 2dyu_A Formamidase; AMIF, CEK, 23.5 46 0.0016 28.0 2.7 35 177-211 51-101 (334)
12 2wqp_A Polysialic acid capsule 23.1 1E+02 0.0036 26.3 4.9 95 127-228 126-226 (349)
13 1ems_A Nitfhit, NIT-fragIle hi 21.9 45 0.0015 29.1 2.4 35 177-211 45-94 (440)
14 2uxy_A Aliphatic amidase; nitr 21.9 47 0.0016 28.0 2.5 34 177-210 50-99 (341)
15 2vqe_K 30S ribosomal protein S 20.3 1.2E+02 0.0041 21.9 4.0 45 197-241 67-114 (129)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.76 E-value=6.1e-19 Score=152.83 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=87.4
Q ss_pred ccCCCCcEEEEeCCCchhHHHHHHHHHHhcC--CCCceEEeecccccccChhhHH--HhhcCeeEe----e------eCC
Q 025883 93 IVPVEERVLLMANHRTEVDWMYVWDLALRKG--CLGYIKYILKSSLMKLPVFGWG--FHILEFISV----E------RNW 158 (247)
Q Consensus 93 ~~~~~~~~iiv~NH~S~~D~~~l~~~~~~~~--~~~~~~~v~k~~l~~~P~~g~~--~~~~g~i~v----~------R~~ 158 (247)
++++++++|++|||||.+|++++..++...+ ...++.|++|+++.+.|+...+ .+.+++|+. + |.+
T Consensus 125 ~l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r~~ 204 (367)
T 1iuq_A 125 KLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETK 204 (367)
T ss_dssp HHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHH
T ss_pred hccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhhhheeeEEecccCCCcchhhhhh
Confidence 4556899999999999999999988763100 0126899999999988877332 144567776 3 322
Q ss_pred c-ccHHHHHHHHHhhcCCCCCcEEEEecCCCcCCc----cch------HHHH----HHHHhcCCC--CcCeee
Q 025883 159 E-IDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTE----EKR------NRSQ----KFAADVGLP--VLTNVL 214 (247)
Q Consensus 159 ~-~d~~~~~~~~~~~~~~~~~~~l~iFPEGtr~~~----~~~------~g~~----~~A~~~~~P--v~p~~l 214 (247)
. .+.++++++.+.+++ .|.+++|||||||+++ +.+ .|++ ++|.++|+| |+|+.+
T Consensus 205 ~r~n~ksl~~~~~~Lk~--GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI 275 (367)
T 1iuq_A 205 RKANTRSLKEMALLLRG--GSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLAL 275 (367)
T ss_dssp HHHHHHHHHHHHHHHHH--CCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHc--CCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEE
Confidence 2 234556666666665 3569999999999996 332 4666 999999999 999987
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=65.71 E-value=12 Score=24.94 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEecCCCcCCccchHHHHHHHHhcCCC
Q 025883 162 EHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLP 208 (247)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~iFPEGtr~~~~~~~g~~~~A~~~~~P 208 (247)
.+.++.+++.+++ +|.++++|-.|..- .....++.-|++.|+.
T Consensus 37 sqdirdiiksmkd--ngkplvvfvngasq--ndvnefqneakkegvs 79 (112)
T 2lnd_A 37 SQDIRDIIKSMKD--NGKPLVVFVNGASQ--NDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHHHHHHHHHTT--CCSCEEEEECSCCH--HHHHHHHHHHHHHTCE
T ss_pred hhhHHHHHHHHHh--cCCeEEEEecCccc--ccHHHHHHHHHhcCcc
Confidence 4568888888887 77799999999753 3456677777877764
No 3
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=41.24 E-value=20 Score=29.39 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCCCCcEEEEecCCCcCC--cc------------chHHHHHHHHhcCCCCc
Q 025883 165 MRQMLSTFRNPNDPLWLTIFPEGTDFT--EE------------KRNRSQKFAADVGLPVL 210 (247)
Q Consensus 165 ~~~~~~~~~~~~~~~~l~iFPEGtr~~--~~------------~~~g~~~~A~~~~~Pv~ 210 (247)
+.+.++...+ ++..+++|||-..+- .+ ......++|++.++.++
T Consensus 42 ~~~~i~~A~~--~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv 99 (281)
T 3p8k_A 42 ITQWFEKNMN--AEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIV 99 (281)
T ss_dssp HHHHHHHHCC--TTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHh--CCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEE
Confidence 4444444332 456799999975431 11 12455678888887765
No 4
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=35.51 E-value=30 Score=27.76 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCcCCc-------------cchHHHHHHHHhcCCCCc
Q 025883 177 DPLWLTIFPEGTDFTE-------------EKRNRSQKFAADVGLPVL 210 (247)
Q Consensus 177 ~~~~l~iFPEGtr~~~-------------~~~~g~~~~A~~~~~Pv~ 210 (247)
++..+++|||...... .......++|++.++.++
T Consensus 34 ~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~~~iv 80 (266)
T 2e11_A 34 GQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAIT 80 (266)
T ss_dssp TTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHTSEEE
T ss_pred CCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhCCEEE
Confidence 4557999999654311 112445678888888765
No 5
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=35.38 E-value=38 Score=27.56 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=27.4
Q ss_pred HHHHHHHhh--cCCCCCcEEEEecCCCcCCc-----------------c-chHHHHHHHHhcCCCCcC
Q 025883 164 VMRQMLSTF--RNPNDPLWLTIFPEGTDFTE-----------------E-KRNRSQKFAADVGLPVLT 211 (247)
Q Consensus 164 ~~~~~~~~~--~~~~~~~~l~iFPEGtr~~~-----------------~-~~~g~~~~A~~~~~Pv~p 211 (247)
.+.+.++.. .+ ++..+++|||...+.. + ......++|++.++.++-
T Consensus 31 ~~~~~i~~a~~~~--~gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 96 (291)
T 1f89_A 31 RAATFIERAMKEQ--PDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVG 96 (291)
T ss_dssp HHHHHHHHHHHHC--TTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHHSSCEEEC
T ss_pred HHHHHHHHHhhcc--CCCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHHHcCcEEEe
Confidence 344444444 32 4567999999655211 1 124456788888877654
No 6
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=32.72 E-value=18 Score=29.13 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=20.9
Q ss_pred CCcEEEEecCCCcCC--c----------------cchHHHHHHHHhcCCCCc
Q 025883 177 DPLWLTIFPEGTDFT--E----------------EKRNRSQKFAADVGLPVL 210 (247)
Q Consensus 177 ~~~~l~iFPEGtr~~--~----------------~~~~g~~~~A~~~~~Pv~ 210 (247)
++..+++|||-..+- . .......++|++.++.++
T Consensus 33 ~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv 84 (262)
T 3ivz_A 33 QGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIV 84 (262)
T ss_dssp TTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEE
Confidence 345699999965431 1 112345667888887765
No 7
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=28.16 E-value=33 Score=27.78 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=21.9
Q ss_pred CCcEEEEecCCCcCCc--------------cchHHHHHHHHhcCCCCcC
Q 025883 177 DPLWLTIFPEGTDFTE--------------EKRNRSQKFAADVGLPVLT 211 (247)
Q Consensus 177 ~~~~l~iFPEGtr~~~--------------~~~~g~~~~A~~~~~Pv~p 211 (247)
++..+++|||...+.- .......++|++.++.++-
T Consensus 34 ~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 82 (276)
T 2w1v_A 34 QGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIG 82 (276)
T ss_dssp TTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEEC
T ss_pred CCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEEe
Confidence 3446999999764311 1124456788888877653
No 8
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=25.21 E-value=1.2e+02 Score=26.20 Aligned_cols=96 Identities=8% Similarity=-0.011 Sum_probs=64.4
Q ss_pred ceEEeecccccccChhhHHHhhcCeeEeeeCCcccHHHHHHHHHhhcCCCCCcEEEEecCCCcCCcc-----chHHHHHH
Q 025883 127 YIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEE-----KRNRSQKF 201 (247)
Q Consensus 127 ~~~~v~k~~l~~~P~~g~~~~~~g~i~v~R~~~~d~~~~~~~~~~~~~~~~~~~l~iFPEGtr~~~~-----~~~g~~~~ 201 (247)
+..=++..++.+.|++..+.+.-..+.++|+.. +.+.+..+++.+.+..+. .+++. |++++-+. ++.....+
T Consensus 136 d~~KIgS~~~~N~pLL~~va~~gKPViLStGma-Tl~Ei~~Ave~i~~~Gn~-~iiLl-hc~s~YPtp~~~~nL~aI~~L 212 (385)
T 1vli_A 136 SAFKIASYEINHLPLLKYVARLNRPMIFSTAGA-EISDVHEAWRTIRAEGNN-QIAIM-HCVAKYPAPPEYSNLSVIPML 212 (385)
T ss_dssp SCEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHHHHHHHHTTTCC-CEEEE-EECSSSSCCGGGCCTTHHHHH
T ss_pred CEEEECcccccCHHHHHHHHhcCCeEEEECCCC-CHHHHHHHHHHHHHCCCC-cEEEE-eccCCCCCChhhcCHHHHHHH
Confidence 466788999999999999998889999999975 677888888888764322 33332 56665332 23455556
Q ss_pred HHhc-CCCCcCeeeeCCCch-HHHHHHHh
Q 025883 202 AADV-GLPVLTNVLLPKTRG-FCLCLETL 228 (247)
Q Consensus 202 A~~~-~~Pv~p~~l~Pr~~g-~~~~l~~l 228 (247)
.+.. ++|| ...-.+.| ....+.+.
T Consensus 213 k~~f~~lpV---G~SdHt~G~~~~~~AAv 238 (385)
T 1vli_A 213 AAAFPEAVI---GFSDHSEHPTEAPCAAV 238 (385)
T ss_dssp HHHSTTSEE---EEEECCSSSSHHHHHHH
T ss_pred HHHcCCCCE---EeCCCCCCchHHHHHHH
Confidence 6666 6765 33335556 55555544
No 9
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=24.95 E-value=35 Score=27.96 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=21.3
Q ss_pred CCcEEEEecCCCcCC--c--------------------cchHHHHHHHHhcCCCCc
Q 025883 177 DPLWLTIFPEGTDFT--E--------------------EKRNRSQKFAADVGLPVL 210 (247)
Q Consensus 177 ~~~~l~iFPEGtr~~--~--------------------~~~~g~~~~A~~~~~Pv~ 210 (247)
++..+++|||...+- . .......+.|++.++.++
T Consensus 37 ~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 92 (303)
T 1uf5_A 37 RGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFN 92 (303)
T ss_dssp TTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHTCEEE
T ss_pred cCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhCeEEE
Confidence 344699999965431 0 112456678888887765
No 10
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=23.52 E-value=26 Score=28.64 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred CCcEEEEecCCCcCC--cc-------------chHHHHHHHHhcCCCCc
Q 025883 177 DPLWLTIFPEGTDFT--EE-------------KRNRSQKFAADVGLPVL 210 (247)
Q Consensus 177 ~~~~l~iFPEGtr~~--~~-------------~~~g~~~~A~~~~~Pv~ 210 (247)
++..+++|||-..+- .+ ..+...++|++.++.++
T Consensus 52 ~gadlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv 100 (283)
T 3hkx_A 52 QGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALV 100 (283)
T ss_dssp TTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEE
Confidence 344699999975431 11 12345678888887654
No 11
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=23.48 E-value=46 Score=27.98 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=21.6
Q ss_pred CCcEEEEecCCCcCC----c------------cchHHHHHHHHhcCCCCcC
Q 025883 177 DPLWLTIFPEGTDFT----E------------EKRNRSQKFAADVGLPVLT 211 (247)
Q Consensus 177 ~~~~l~iFPEGtr~~----~------------~~~~g~~~~A~~~~~Pv~p 211 (247)
++..+++|||-...- . .......++|++.++.++-
T Consensus 51 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv~ 101 (334)
T 2dyu_A 51 PGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKACKEAKVYGVF 101 (334)
T ss_dssp TTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCcEEEcCCCccccCCCChhHHHHhhccCCCHHHHHHHHHHHHhCeEEEE
Confidence 356799999954431 1 1124556788888876543
No 12
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=23.13 E-value=1e+02 Score=26.27 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=64.6
Q ss_pred ceEEeecccccccChhhHHHhhcCeeEeeeCCcccHHHHHHHHHhhcCCCCCcEEEEecCCCcCCcc-----chHHHHHH
Q 025883 127 YIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEE-----KRNRSQKF 201 (247)
Q Consensus 127 ~~~~v~k~~l~~~P~~g~~~~~~g~i~v~R~~~~d~~~~~~~~~~~~~~~~~~~l~iFPEGtr~~~~-----~~~g~~~~ 201 (247)
+..=++..++.+.|++..+.+.-..+.++|+.. +.+.+..+++.+.+..+ .+++. |++++-+. ++.....+
T Consensus 126 ~~~KI~S~~~~n~~LL~~va~~gkPviLstGma-t~~Ei~~Ave~i~~~G~--~iiLl-hc~s~Yp~~~~~~nL~ai~~l 201 (349)
T 2wqp_A 126 PAYKIGSGECNNYPLIKLVASFGKPIILSTGMN-SIESIKKSVEIIREAGV--PYALL-HCTNIYPTPYEDVRLGGMNDL 201 (349)
T ss_dssp SCEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHHHHHHHHHHTC--CEEEE-ECCCCSSCCGGGCCTHHHHHH
T ss_pred CEEEECcccccCHHHHHHHHhcCCeEEEECCCC-CHHHHHHHHHHHHHcCC--CEEEE-eccCCCCCChhhcCHHHHHHH
Confidence 466788999999999999998888999999975 67777777877765222 34444 67776433 23555566
Q ss_pred HHhc-CCCCcCeeeeCCCchHHHHHHHh
Q 025883 202 AADV-GLPVLTNVLLPKTRGFCLCLETL 228 (247)
Q Consensus 202 A~~~-~~Pv~p~~l~Pr~~g~~~~l~~l 228 (247)
.++. ++|| ...-.+.|....+.+.
T Consensus 202 k~~f~~lpV---g~sdHt~G~~~~~AAv 226 (349)
T 2wqp_A 202 SEAFPDAII---GLSDHTLDNYACLGAV 226 (349)
T ss_dssp HHHCTTSEE---EEECCSSSSHHHHHHH
T ss_pred HHHCCCCCE---EeCCCCCcHHHHHHHH
Confidence 6666 7765 3333555655555554
No 13
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=21.87 E-value=45 Score=29.13 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCcCCcc---------------chHHHHHHHHhcCCCCcC
Q 025883 177 DPLWLTIFPEGTDFTEE---------------KRNRSQKFAADVGLPVLT 211 (247)
Q Consensus 177 ~~~~l~iFPEGtr~~~~---------------~~~g~~~~A~~~~~Pv~p 211 (247)
+|..+++|||....... ......++|++.|+.++-
T Consensus 45 ~gadlvv~PE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 94 (440)
T 1ems_A 45 KKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSL 94 (440)
T ss_dssp TTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEECCCcccccCcchhHHHHhhccCCCHHHHHHHHHHHHcCeEEEe
Confidence 34469999998653211 113345688888887643
No 14
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=21.85 E-value=47 Score=28.04 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=21.1
Q ss_pred CCcEEEEecCCCcCC----cc------------chHHHHHHHHhcCCCCc
Q 025883 177 DPLWLTIFPEGTDFT----EE------------KRNRSQKFAADVGLPVL 210 (247)
Q Consensus 177 ~~~~l~iFPEGtr~~----~~------------~~~g~~~~A~~~~~Pv~ 210 (247)
++..+++|||-...- .+ ......+.|++.++.++
T Consensus 50 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~~~~~~~l~~~a~~~~i~iv 99 (341)
T 2uxy_A 50 PGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEIFSRACRKANVWGV 99 (341)
T ss_dssp TTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHHHHHHHHHHHTCEEE
T ss_pred CCCcEEEeCCCcccccCCCHHHHHHHhccCCCHHHHHHHHHHHHhCcEEE
Confidence 356799999965531 11 11345667888787665
No 15
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=20.26 E-value=1.2e+02 Score=21.89 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCCCcCeeeeCCCchHHHHHHHhcc---cCCeeEeccce
Q 025883 197 RSQKFAADVGLPVLTNVLLPKTRGFCLCLETLRN---TLDAGFLRCSF 241 (247)
Q Consensus 197 g~~~~A~~~~~Pv~p~~l~Pr~~g~~~~l~~l~~---~~~~i~d~~~~ 241 (247)
.+.+-|++.|..-+.+.+--...|-..++++|.. .+..|.|+|++
T Consensus 67 ~~~~~~~~~Gi~~v~V~vkG~G~Gre~airaL~~~Gl~I~~I~DvTpi 114 (129)
T 2vqe_K 67 DAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPV 114 (129)
T ss_dssp HHHHHHHTTTCCEEEEEEESCCTTHHHHHHHHHTSSSEEEECEECCCC
T ss_pred HHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 3445567778888888887777888899999964 46678898765
Done!