RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 025883
         (247 letters)



>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
           helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
           PDB: 1k30_A
          Length = 367

 Score = 32.9 bits (74), Expect = 0.097
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 23/118 (19%)

Query: 98  ERVLLMANHRTEVDWMYVWDLALRKG--CLGYIKYILKSSLMKLPV---FGWGFHILEFI 152
             V+L++NH+TE D   +  L  +          ++    ++  P+   F  G +++   
Sbjct: 130 HNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVY 189

Query: 153 S----------VERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQK 200
           S           E   + +   +++M    R  +  +W  I P G       R+R   
Sbjct: 190 SKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIW--IAPSGG------RDRPDP 239


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.10
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 23/90 (25%)

Query: 115  VWDLALR--KGCLGY-IKYILKSSLMKLPV-FG--WGFHILE--------------FISV 154
            VW+ A    K   G+ I  I+ ++ + L + FG   G  I E                + 
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704

Query: 155  ERNWEIDEHVMRQMLSTFRNPNDPLWLTIF 184
            +   EI+EH       TFR+    L  T F
Sbjct: 1705 KIFKEINEHSTSY---TFRSEKGLLSATQF 1731



 Score = 29.2 bits (65), Expect = 1.6
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 54/138 (39%)

Query: 40  FLVYFAPIIAIILRMFSVHHCRKATSFLFGLWLALWPFLFEKINRTTMVFSG-DI-VPVE 97
           FL   +P        F   H    +  L     A    + + + +  + F+  DI +PV 
Sbjct: 420 FLPVASP--------F---H----SHLLVP---AS-DLINKDLVKNNVSFNAKDIQIPV- 459

Query: 98  ERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGW----GF---HILE 150
                   + T  D     DL  R    G I   +   +++LPV  W     F   HIL+
Sbjct: 460 --------YDTF-DGS---DL--RVLS-GSISERIVDCIIRLPVK-WETTTQFKATHILD 503

Query: 151 F----IS-----VERNWE 159
           F     S       RN +
Sbjct: 504 FGPGGASGLGVLTHRNKD 521



 Score = 27.3 bits (60), Expect = 5.8
 Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 22/98 (22%)

Query: 49  AIILRMFSVHHCRKATSFLF--GLWLA---LWPFLFEKINRTTMVFSGD---IVPVE--E 98
           A   R  ++ H       L     +     L     + +   T  F+ D     P E   
Sbjct: 3   AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62

Query: 99  RVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSL 136
           + L   +   E               +G    +L   L
Sbjct: 63  KFLGYVSSLVE------------PSKVGQFDQVLNLCL 88


>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
           4YL)-propionic acid, PSI-2 community, structural
           genomics, structure initiative; HET: DI6; 1.97A
           {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
          Length = 416

 Score = 30.2 bits (68), Expect = 0.55
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 162 EHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPV 209
           E + ++++           + +F E   F+  +  +    A   GL V
Sbjct: 192 ETICQEIIPAAAEAGLADAVDVFCEHIGFSLAQTEQVYLAADQYGLAV 239


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 1.6
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 31/83 (37%)

Query: 111 DWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLS 170
           D +  WD           K++    L           I+E  S+     ++    R+M  
Sbjct: 339 DGLATWD---------NWKHVNCDKLTT---------IIE-SSLN---VLEPAEYRKM-- 374

Query: 171 TFRNPNDPLWLTIFPEGTDFTEE 193
            F        L++FP        
Sbjct: 375 -FDR------LSVFPPSAHIPTI 390


>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
           product-bound, structural genomics, protein STRU
           initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
           str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
          Length = 419

 Score = 28.3 bits (63), Expect = 2.8
 Identities = 18/96 (18%), Positives = 31/96 (32%)

Query: 114 YVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLSTFR 173
           Y  D+      L   + +     +++       H        RN +    V+   L    
Sbjct: 156 YGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAH 215

Query: 174 NPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPV 209
                  +  F EG  F+ ++ +R    A   GLPV
Sbjct: 216 AEGLADAVDGFCEGIAFSVKEIDRVFAAAQQRGLPV 251


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.333    0.145    0.483 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,902,277
Number of extensions: 222371
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 20
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 56 (25.4 bits)