RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025883
         (247 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 17/110 (15%)

Query: 94  VPVEERVLLMANHRTEVDWMYVWDLALRKGC--LGYIKYILKSSLMKLPVFGWGFHILEF 151
           +     V+L++NH+TE D   +  L  +          ++    ++  P+          
Sbjct: 126 LQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNL 185

Query: 152 ISVERNWEI-------------DEHVMRQMLSTFRNPNDPLWLTIFPEGT 188
           I V     +             +   +++M    R       + I P G 
Sbjct: 186 ICVYSKKHMFDIPELTETKRKANTRSLKEMALLLR--GGSQLIWIAPSGG 233


>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated
           lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 174

 Score = 29.1 bits (64), Expect = 0.38
 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 12/123 (9%)

Query: 108 TEVDWMYVWDLALRKGCLGYIKYIL----KSSLMKLPVFGWGFHILEFISVERNWEIDEH 163
            E     V  +  RK    Y         +     L            ++      +  +
Sbjct: 56  KEDKSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTLGNIKSYP----GLTSYLVRVVSTN 111

Query: 164 VMRQML---STFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPVLTNVLLPKTRG 220
             +  +          +   +T++    + T E +    +F+  +GLP   +++ P    
Sbjct: 112 YNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLGLPE-NHIVFPVPID 170

Query: 221 FCL 223
            C+
Sbjct: 171 QCI 173


>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 217

 Score = 27.0 bits (59), Expect = 1.8
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 145 GFHILEFISVERNWEIDEHV 164
           G  I   +S E NW+I   +
Sbjct: 196 GVEIEGPLSTETNWDIAHMI 215


>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
          {Escherichia coli [TaxId: 562]}
          Length = 129

 Score = 26.0 bits (57), Expect = 2.5
 Identities = 12/79 (15%), Positives = 27/79 (34%)

Query: 1  MEECRPLKCDNRLKRRPLTPIRVFRGLICLLVFFFTAFMFLVYFAPIIAIILRMFSVHHC 60
          +++ RP+  D +  R P+T I      +  ++ F    + L      ++           
Sbjct: 5  VKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAI 64

Query: 61 RKATSFLFGLWLALWPFLF 79
            +    F +W  L    +
Sbjct: 65 MGSFFVKFIMWGILTALAY 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.145    0.483 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 984,123
Number of extensions: 45556
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 10
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 52 (24.0 bits)