BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025884
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2
Length = 1463
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDG 103
C ICL+ + +E + C H +C TCIL+WA + +CP + PF+ + +L+G
Sbjct: 41 CPICLNCLLEKEVGFPESCNHVFCMTCILKWAETLA--SCPIDRKPFQAVFKFSALEG 96
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDG 103
G C ICLD AL C HA+C CI RW PTCP CK P + L +H
Sbjct: 11 GSCCICLDAITGAARALP--CLHAFCLACIRRWLEG--RPTCPLCKAPVQSL-IHSV--A 63
Query: 104 SDYMFEE 110
SD FEE
Sbjct: 64 SDECFEE 70
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDG 103
G C ICLD AL C HA+C CI RW PTCP CK P + L +H
Sbjct: 11 GSCCICLDAITGAARALP--CLHAFCLACIRRWLEG--RPTCPLCKAPVQSL-IHSV--A 63
Query: 104 SDYMFEE 110
SD FEE
Sbjct: 64 SDECFEE 70
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSD 105
C ICL+ AL C HA+C CI RW +NPTCP CK P E + VH SD
Sbjct: 8 CPICLEDPSNYSMAL--PCLHAFCYVCITRWIR--QNPTCPLCKVPVESV-VHTI--ESD 60
Query: 106 YMFEES 111
F+E+
Sbjct: 61 SEFKET 66
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSD 105
C ICL+ AL C HA+C CI RW +NPTCP CK P E + VH SD
Sbjct: 8 CPICLEDPSNYSMAL--PCLHAFCYVCITRWIR--QNPTCPLCKVPVESV-VHTI--ESD 60
Query: 106 YMFEES 111
F+E+
Sbjct: 61 SEFKET 66
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 11 EELVKGLDNL-SISDQGEMQSKAD-NREMGFGNHGGVCAICLDKTVLQETALVKGCEHAY 68
E + G DN +I + G S A+ N + + CAICL + + C H +
Sbjct: 65 EPVSAGPDNANAIGEPGTSASAAEENGTVERNSPPPNCAICLSR--CRRKCFTDSCMHQF 122
Query: 69 CATCILRWASYVRNPTCPQCKHPFE-FLHVHRSLDGSD-YMFEESVCL----------LL 116
C C+ W+ P CP CK PF +H R+LD D Y + + + ++
Sbjct: 123 CFKCLCEWSKI--KPECPLCKQPFRTIIHNVRTLDDYDRYPVQTTSPVPTENPSLRYHIV 180
Query: 117 RATWFKPLIVEDHVVVQ 133
R + PL+ V+V
Sbjct: 181 RRPRYTPLVQNQAVIVN 197
>sp|Q09268|YQDA_CAEEL Uncharacterized RING finger protein C32D5.10 OS=Caenorhabditis
elegans GN=C32D5.10 PE=4 SV=2
Length = 610
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLH 96
C++C ++ + +T + C H +C CI+ W + P CP CK P F+
Sbjct: 41 CSVCKNEII--DTTSLSDCCHEFCYDCIVGWLTKGSGPFCPMCKTPVSFIQ 89
>sp|Q8TDB6|DTX3L_HUMAN E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens GN=DTX3L PE=1
SV=1
Length = 740
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
G+C IC+D T+ + L K C+H +CA CI + SY P CP C+
Sbjct: 559 GICVICMD-TISNKKVLPK-CKHEFCAPCINKAMSY--KPICPTCQ 600
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana
GN=RHF1A PE=1 SV=1
Length = 371
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92
N C+ICL+ LQ+ + V C+H Y CI+ W+ R+ CP C F
Sbjct: 40 NNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQ--RSKECPICWQLF 90
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHR 99
G+ VCAICLD+ + V C HAY + C+ W + R TCP CK P VHR
Sbjct: 224 GDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK-TCPICKQP-----VHR 277
>sp|O42845|YFH7_SCHPO Uncharacterized RING finger protein C23A1.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC23A1.07 PE=4 SV=1
Length = 251
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 44 GVCAICL---DKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94
G+C +C+ D+ V T C H YC CI+ V N +CP CKH F
Sbjct: 190 GLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRIRF 243
>sp|P08393|ICP0_HHV11 E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 1 (strain 17)
GN=ICP0 PE=1 SV=1
Length = 775
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 32 ADNREMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91
A RE G + G VCA+C D+ C H +C C+ W +RN TCP C
Sbjct: 102 APPREDGGSDEGDVCAVCTDEIAPHLRCDTFPCMHRFCIPCMKTWM-QLRN-TCPLCNAK 159
Query: 92 FEFLHVHRSLDGS 104
+L V + GS
Sbjct: 160 LVYLIVGVTPSGS 172
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHR 99
G+ VCAICLD+ + V C HAY + C+ W + R TCP CK P VHR
Sbjct: 224 GDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK-TCPICKQP-----VHR 277
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHR 99
G+ VCAICLD+ + + C HAY + C+ W + R TCP CK P VHR
Sbjct: 224 GDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRK-TCPICKQP-----VHR 277
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE-FLHVHRSLDGS 104
C ICLD+ + + C H +C C+ W+ CP CK PF+ H R+ D
Sbjct: 103 CPICLDR--FDNVSYLDRCLHKFCFRCVQEWSK--NKAECPLCKQPFDSIFHSVRAEDD- 157
Query: 105 DYMFEESVCLLLRATWFKPLIVED 128
F+E V LR ++ + D
Sbjct: 158 ---FKEYV---LRPSYNGSFVTPD 175
>sp|P28284|ICP0_HHV2H E3 ubiquitin-protein ligase ICP0 OS=Human herpesvirus 2 (strain
HG52) GN=RL2 PE=3 SV=1
Length = 825
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGS 104
VCA+C D+ C H +C C+ W +RN TCP C P +L V + GS
Sbjct: 125 VCAVCTDEIAPPLRCQSFPCLHPFCIPCMKTWIP-LRN-TCPLCNTPVAYLIVGVTASGS 182
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE--FLHVHRSLDG 103
C ICLD+ + + C H +C C+ W+ CP CK PF+ F V D
Sbjct: 104 CPICLDR--FDNVSYLDRCLHKFCFRCVQEWSK--NKAECPLCKQPFDSIFHSVRAEDDF 159
Query: 104 SDYMFEES 111
+Y+ S
Sbjct: 160 KEYVLRPS 167
>sp|P0CH02|AT21B_ARATH Putative RING-H2 finger protein ATL21B OS=Arabidopsis thaliana
GN=ATL21B PE=3 SV=1
Length = 362
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 15 KGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKTVLQETA-LVKGCEHAYCATCI 73
+GLD +I M+ R G +G VC ICL + V +ET + C+H + A CI
Sbjct: 287 RGLDQSTIEKYKTMELGESRRPPG--TNGIVCPICLSEYVSKETVRFIPECDHCFHAKCI 344
Query: 74 LRWASYVRNPTCPQCKH 90
W + +CP C++
Sbjct: 345 DVWLKI--HGSCPLCRN 359
>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis GN=rnf166 PE=2 SV=1
Length = 241
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 30 SKADNREMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
S AD+ E FG C ICL+ V + + C H +C C L+ V +P CP C+
Sbjct: 26 SSADSLETQFG-----CPICLE--VYYKPVAIGSCGHTFCGEC-LQPCLQVSSPLCPLCR 77
Query: 90 HPFE 93
PF+
Sbjct: 78 MPFD 81
>sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis
GN=mkrn2 PE=2 SV=2
Length = 409
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 11/67 (16%)
Query: 40 GNHGGVCAICLDKTVLQETA------LVKGCEHAYCATCILRW--ASYVRNP---TCPQC 88
+ G VC+IC+++ +++ ++ C H YC TCI +W A NP +CP+C
Sbjct: 224 ASEGRVCSICMERVYEKQSPAQRRFRILSDCNHTYCLTCIRQWRCARQFDNPVIKSCPEC 283
Query: 89 KHPFEFL 95
+ EF+
Sbjct: 284 RVISEFV 290
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDGSD 105
C ICL L +A+ C H +C CI++ S + TCP CK P+ R + G+
Sbjct: 16 CPICLS---LYNSAVSLSCNHVFCNACIVK--SMKMDATCPVCKIPYH----RREIRGAP 66
Query: 106 YM 107
+M
Sbjct: 67 HM 68
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVH 98
F H +CAICLD+ + + C H Y CI W S +CP CK
Sbjct: 302 FTWHNDLCAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQ--SVAATE 359
Query: 99 RSLDGSDYMFEE 110
S D + Y F +
Sbjct: 360 DSFDSTTYSFRD 371
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 42 HGGVCAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92
+ G CA+CL K ++ L+ C HA+ A CI W V N TCP C+ P
Sbjct: 113 NSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIW--LVSNQTCPLCRSPL 162
>sp|Q9ERV1|MKRN2_MOUSE Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus
GN=Mkrn2 PE=2 SV=2
Length = 416
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 45 VCAICLDKTVLQETA------LVKGCEHAYCATCILRW--ASYVRNP---TCPQCKHPFE 93
VC+IC++ + + +A ++ C H YC +CI +W A NP +CP+C+ E
Sbjct: 237 VCSICMEVILEKASASERRFGILSNCSHTYCLSCIRQWRCAKQFENPIIKSCPECRVISE 296
Query: 94 FL 95
F+
Sbjct: 297 FV 298
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Query: 45 VCAICLDKTVLQETA------LVKGCEHAYCATCILRW--ASYVRNP---TCPQCKHPFE 93
VC+IC++ + + +A ++ C H YC +CI +W A NP +CP+C+ E
Sbjct: 237 VCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISE 296
Query: 94 FL 95
F+
Sbjct: 297 FV 298
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 43 GGV-CAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRNPTCPQCK 89
GGV CAICL++ +ET L+ C HA+ A+CI W S TCP C+
Sbjct: 124 GGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLS--SRSTCPVCR 170
>sp|Q6GLD9|MKRN2_XENTR Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus
tropicalis GN=mkrn2 PE=2 SV=1
Length = 418
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 35 REMGF-GNHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRW--ASYVRNP-- 83
R F + G VC+IC+++ +++ ++ C H YC CI +W A NP
Sbjct: 225 RAFAFQASEGKVCSICMERVYDKQSPSERRFGILSNCHHTYCLACIRQWRCARQFENPVI 284
Query: 84 -TCPQCKHPFEFL 95
+CP+C+ EF+
Sbjct: 285 KSCPECRVISEFV 297
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
G+ VCAICLD+ + + C HAY C+ W + + TCP CK
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK-TCPVCKQ 283
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
G+ VCAICLD+ + + C HAY C+ W + + TCP CK
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK-TCPVCKQ 283
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
G+ VCAICLD+ + + C HAY C+ W + + TCP CK
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK-TCPVCKQ 283
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
CAICL+K + E V C H + C+ W ++N TCP C+H
Sbjct: 202 CAICLEKYIDGEELRVIPCTHRFHKRCVDPW--LLQNHTCPHCRH 244
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
CAICL+K + E V C H + C+ W ++N TCP C+H
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPW--LLQNHTCPHCRH 308
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
G+ VCAICLD+ + + C HAY C+ W + + TCP CK
Sbjct: 234 GDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK-TCPVCKQ 283
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 34 NREMGFGNHGGVCAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
+REM G C ICL V E L+ C H + CI +W + + TCP+C+H
Sbjct: 123 SREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQH--HLTCPKCRH 178
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90
C +CL + +ET + C H + + CIL W S + +CP C+H
Sbjct: 88 CPVCLLEFEAEETVIEMPCHHLFHSNCILPWLS--KTNSCPLCRH 130
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 38.5 bits (88), Expect = 0.041, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93
+C++C++ + ++K C H YC CI RN CPQCK PF+
Sbjct: 1049 ICSVCMEN--FRNYIIIK-CGHIYCNNCIFNNLK-TRNRKCPQCKVPFD 1093
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93
G VCA+C D V+ ET C H Y CI+ W RN +CP C+ E
Sbjct: 251 GEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLG-TRN-SCPVCRFQLE 302
>sp|Q58DK8|TRI38_BOVIN Tripartite motif-containing protein 38 OS=Bos taurus GN=TRIM38
PE=2 SV=1
Length = 460
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 44 GVCAICLDKTVLQETALVKGCEHAYCATCIL-------RWASYVRNPTCPQCKHPF 92
C+ICL L A+ C H+YC CI+ R ++ +CPQC+ PF
Sbjct: 10 ATCSICLH---LMTNAVSISCGHSYCHVCIVSFFENLNRMTPGLKTFSCPQCRAPF 62
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 38.5 bits (88), Expect = 0.046, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 24/96 (25%)
Query: 9 DGEELVKGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKT------------VLQ 56
DG K L N IS+ G G H CAIC+ V Q
Sbjct: 672 DGYSYFKPLSNEYISEHGG----------GTAEHTVDCAICMSDVPIYIEEIPETHKVDQ 721
Query: 57 ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92
+ +V C H + +C+ W +Y CP C+ P
Sbjct: 722 HSYMVTPCNHVFHTSCLENWMNY--KLQCPVCRSPL 755
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 58 TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF---EFLHVH 98
+ L+ C HA+C+ C+ + + + TCPQC+ PF + L +H
Sbjct: 649 SKLIPNCGHAFCSNCMEPFYEH-KTSTCPQCETPFSVSDILTIH 691
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1
SV=1
Length = 336
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
+C ICLD +L+ T K C H +CA CI+ A N CP C+
Sbjct: 50 MCPICLD--MLKNTMTTKECLHRFCADCIIT-ALRSGNKECPTCR 91
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2
SV=1
Length = 336
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
+C ICLD +L+ T K C H +CA CI+ A N CP C+
Sbjct: 50 MCPICLD--MLKNTMTTKECLHRFCADCIIT-ALRSGNKECPTCR 91
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1
SV=1
Length = 336
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
+C ICLD +L+ T K C H +CA CI+ A N CP C+
Sbjct: 50 MCPICLD--MLKNTMTTKECLHRFCADCIIT-ALRSGNKECPTCR 91
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2
SV=1
Length = 336
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
+C ICLD +L+ T K C H +CA CI+ A N CP C+
Sbjct: 50 MCPICLD--MLKNTMTTKECLHRFCADCIIT-ALRSGNKECPTCR 91
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2
PE=2 SV=1
Length = 308
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89
+C ICLD +L+ T K C H +CA CI+ A N CP C+
Sbjct: 50 MCPICLD--MLKNTMTTKECLHRFCADCII-TALRSGNKECPTCR 91
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91
G +C++C+ V C H + CI RW S N TCP C+ P
Sbjct: 629 GKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLS--ENCTCPICRQP 675
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 15 KGLDNLSISDQGEMQSKADNREMGFGNHGGVCAICLDKTVLQETA-LVKGCEHAYCATCI 73
GLD I + ++ NHG CAICL + ++T L+ C H + + CI
Sbjct: 76 TGLDPFIIRSFPVFHYSSATKK----NHGTECAICLSEFSDEDTVRLITVCRHPFHSNCI 131
Query: 74 LRWASYVRNPTCPQCK 89
W + + TCP C+
Sbjct: 132 DLW--FELHKTCPVCR 145
>sp|Q6FY76|RAD5_CANGA DNA repair protein RAD5 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAD5 PE=3
SV=1
Length = 1151
Score = 38.1 bits (87), Expect = 0.063, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPT----CPQCK 89
C+IC + + +A+V CEH +C C+ + ++ + + CP C+
Sbjct: 897 CSICTAEPIESSSAVVTECEHVFCKECLEEYGNFQKEKSLQQKCPNCR 944
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP-FEF 94
G VC++C+ V C H + CI RW S N TCP C+ P EF
Sbjct: 611 GKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLS--ENCTCPVCRRPVLEF 661
>sp|Q6BIP2|RAD5_DEBHA DNA repair protein RAD5 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD5
PE=3 SV=2
Length = 1190
Score = 38.1 bits (87), Expect = 0.066, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 46 CAICLDKTV-LQETALVKGCEHAYCATCILRWASY----VRNPTCPQCKHP 91
C+IC + L E AL C HAYC C+L + + P CP C+ P
Sbjct: 916 CSICTQSPIPLGEMALTP-CGHAYCLNCVLEHFDFQEKNSQKPLCPNCREP 965
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,911,191
Number of Sequences: 539616
Number of extensions: 3727091
Number of successful extensions: 15695
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 426
Number of HSP's that attempted gapping in prelim test: 15508
Number of HSP's gapped (non-prelim): 578
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)