Query 025884
Match_columns 247
No_of_seqs 216 out of 1763
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 10:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.2 7.6E-12 1.6E-16 81.6 1.5 43 45-89 2-44 (44)
2 PF15227 zf-C3HC4_4: zinc fing 99.2 2.5E-11 5.5E-16 78.6 3.2 40 46-88 1-42 (42)
3 PLN03208 E3 ubiquitin-protein 99.1 6.3E-11 1.4E-15 100.2 5.5 53 39-94 14-80 (193)
4 PHA02929 N1R/p28-like protein; 99.1 1.2E-10 2.5E-15 102.1 4.1 59 41-101 172-235 (238)
5 PF13923 zf-C3HC4_2: Zinc fing 99.0 1.5E-10 3.2E-15 73.6 2.9 39 46-88 1-39 (39)
6 PF13920 zf-C3HC4_3: Zinc fing 99.0 3.6E-10 7.9E-15 75.6 3.3 46 43-93 2-48 (50)
7 PF00097 zf-C3HC4: Zinc finger 99.0 4.7E-10 1E-14 71.8 3.1 41 46-88 1-41 (41)
8 KOG0317 Predicted E3 ubiquitin 99.0 6.9E-10 1.5E-14 98.3 4.8 58 32-94 228-285 (293)
9 PHA02926 zinc finger-like prot 98.9 6.5E-10 1.4E-14 95.4 4.1 62 39-100 166-237 (242)
10 smart00504 Ubox Modified RING 98.9 1.4E-09 3E-14 75.7 3.7 46 44-94 2-47 (63)
11 KOG0823 Predicted E3 ubiquitin 98.9 1.5E-09 3.2E-14 93.6 4.5 52 40-94 44-96 (230)
12 TIGR00599 rad18 DNA repair pro 98.9 1.1E-09 2.4E-14 102.3 3.9 65 40-109 23-89 (397)
13 cd00162 RING RING-finger (Real 98.9 2.3E-09 5.1E-14 68.4 3.9 45 45-92 1-45 (45)
14 PF12678 zf-rbx1: RING-H2 zinc 98.8 3.7E-09 8E-14 76.5 3.8 43 45-89 21-73 (73)
15 KOG0287 Postreplication repair 98.8 1.8E-09 4E-14 97.4 2.7 63 41-108 21-85 (442)
16 KOG4628 Predicted E3 ubiquitin 98.8 2.7E-09 5.9E-14 97.7 3.2 50 44-94 230-279 (348)
17 KOG0320 Predicted E3 ubiquitin 98.7 9.4E-09 2E-13 85.4 3.9 52 40-94 128-179 (187)
18 COG5432 RAD18 RING-finger-cont 98.7 1.3E-08 2.9E-13 90.3 3.2 48 42-94 24-71 (391)
19 PF14634 zf-RING_5: zinc-RING 98.6 3.2E-08 7E-13 64.5 4.0 44 45-90 1-44 (44)
20 smart00184 RING Ring finger. E 98.6 4.4E-08 9.6E-13 60.3 3.8 39 46-88 1-39 (39)
21 PF04564 U-box: U-box domain; 98.6 2.5E-08 5.5E-13 72.0 2.5 54 42-99 3-58 (73)
22 PF12861 zf-Apc11: Anaphase-pr 98.6 6.4E-08 1.4E-12 71.6 4.3 51 43-93 21-82 (85)
23 COG5243 HRD1 HRD ubiquitin lig 98.6 3.1E-08 6.8E-13 90.5 2.9 52 40-94 284-346 (491)
24 COG5540 RING-finger-containing 98.6 3.8E-08 8.2E-13 87.8 3.2 52 42-94 322-373 (374)
25 PF14835 zf-RING_6: zf-RING of 98.5 8.4E-09 1.8E-13 72.1 -1.4 54 43-102 7-62 (65)
26 PF13445 zf-RING_UBOX: RING-ty 98.5 6.5E-08 1.4E-12 62.9 2.6 41 46-86 1-43 (43)
27 KOG2164 Predicted E3 ubiquitin 98.5 6.1E-08 1.3E-12 91.8 2.8 49 43-94 186-237 (513)
28 COG5574 PEX10 RING-finger-cont 98.4 2.1E-07 4.6E-12 81.7 2.7 49 42-94 214-263 (271)
29 KOG2177 Predicted E3 ubiquitin 98.4 1.6E-07 3.6E-12 81.7 2.0 46 40-90 10-55 (386)
30 KOG0311 Predicted E3 ubiquitin 98.3 4.8E-08 1E-12 88.8 -1.8 52 40-94 40-91 (381)
31 TIGR00570 cdk7 CDK-activating 98.3 6.1E-07 1.3E-11 81.1 4.4 50 44-94 4-55 (309)
32 KOG1785 Tyrosine kinase negati 98.3 6E-07 1.3E-11 82.9 3.7 52 40-94 366-417 (563)
33 KOG0802 E3 ubiquitin ligase [P 98.3 3.4E-07 7.4E-12 89.4 1.7 50 40-93 288-341 (543)
34 KOG0978 E3 ubiquitin ligase in 98.1 9.8E-07 2.1E-11 87.2 1.7 51 40-94 640-690 (698)
35 KOG2660 Locus-specific chromos 98.1 1.3E-06 2.8E-11 79.0 2.0 53 38-94 10-62 (331)
36 COG5219 Uncharacterized conser 98.1 5.3E-07 1.2E-11 90.4 -0.7 50 43-93 1469-1523(1525)
37 KOG1734 Predicted RING-contain 98.0 2.6E-06 5.6E-11 75.2 2.7 68 39-106 220-295 (328)
38 KOG2879 Predicted E3 ubiquitin 98.0 3.7E-06 8.1E-11 74.3 3.7 57 37-95 233-289 (298)
39 KOG0824 Predicted E3 ubiquitin 98.0 3.3E-06 7.2E-11 75.5 2.2 48 43-94 7-54 (324)
40 PF11789 zf-Nse: Zinc-finger o 97.9 6.5E-06 1.4E-10 56.7 2.4 46 40-87 8-53 (57)
41 smart00744 RINGv The RING-vari 97.9 1.8E-05 3.9E-10 52.8 3.9 44 45-89 1-49 (49)
42 KOG1039 Predicted E3 ubiquitin 97.9 8.7E-06 1.9E-10 75.0 2.8 57 40-98 158-226 (344)
43 COG5194 APC11 Component of SCF 97.9 1.4E-05 3E-10 58.1 3.2 35 58-94 48-82 (88)
44 KOG0804 Cytoplasmic Zn-finger 97.8 7.8E-06 1.7E-10 76.6 2.4 53 37-93 169-222 (493)
45 KOG4172 Predicted E3 ubiquitin 97.8 8.6E-06 1.9E-10 55.1 1.1 47 44-94 8-55 (62)
46 KOG0827 Predicted E3 ubiquitin 97.8 1.3E-05 2.8E-10 74.0 2.5 49 45-93 6-56 (465)
47 KOG0828 Predicted E3 ubiquitin 97.7 1.9E-05 4.2E-10 74.8 2.7 54 40-94 568-635 (636)
48 KOG1493 Anaphase-promoting com 97.7 2.1E-05 4.6E-10 56.7 1.7 49 45-93 22-81 (84)
49 KOG4159 Predicted E3 ubiquitin 97.6 2.7E-05 5.9E-10 73.1 2.6 50 40-94 81-130 (398)
50 KOG4265 Predicted E3 ubiquitin 97.6 4.3E-05 9.3E-10 70.0 3.1 49 41-94 288-337 (349)
51 KOG0297 TNF receptor-associate 97.6 3.3E-05 7.1E-10 72.7 1.8 51 40-94 18-68 (391)
52 PF11793 FANCL_C: FANCL C-term 97.5 2.1E-05 4.6E-10 56.4 -0.4 51 43-93 2-66 (70)
53 KOG0825 PHD Zn-finger protein 97.4 3.9E-05 8.4E-10 76.2 -0.2 57 45-103 125-181 (1134)
54 COG5152 Uncharacterized conser 97.2 0.00021 4.6E-09 60.7 2.5 49 40-93 193-241 (259)
55 KOG4692 Predicted E3 ubiquitin 97.1 0.00032 6.9E-09 64.3 2.5 50 39-93 418-467 (489)
56 KOG2930 SCF ubiquitin ligase, 97.0 0.00043 9.3E-09 52.8 2.5 30 62-93 79-108 (114)
57 KOG1002 Nucleotide excision re 97.0 0.00037 8.1E-09 66.8 2.4 51 41-94 534-587 (791)
58 KOG1645 RING-finger-containing 96.9 0.00069 1.5E-08 63.2 3.0 52 42-93 3-56 (463)
59 COG5222 Uncharacterized conser 96.8 0.00072 1.6E-08 60.8 2.2 46 42-90 273-318 (427)
60 KOG1941 Acetylcholine receptor 96.8 0.00061 1.3E-08 63.3 1.6 52 41-92 363-415 (518)
61 KOG4445 Uncharacterized conser 96.6 0.00063 1.4E-08 61.2 0.7 54 41-94 113-187 (368)
62 KOG4739 Uncharacterized protei 96.6 0.0012 2.7E-08 57.6 2.1 54 44-102 4-57 (233)
63 KOG4275 Predicted E3 ubiquitin 96.4 0.0004 8.6E-09 62.2 -1.7 42 43-93 300-342 (350)
64 PHA02825 LAP/PHD finger-like p 96.3 0.0056 1.2E-07 50.4 4.4 52 39-94 4-60 (162)
65 KOG1813 Predicted E3 ubiquitin 96.2 0.0016 3.5E-08 58.5 0.9 47 43-94 241-287 (313)
66 KOG1814 Predicted E3 ubiquitin 96.2 0.0032 7E-08 58.8 2.9 52 40-91 181-238 (445)
67 KOG3039 Uncharacterized conser 96.1 0.0056 1.2E-07 53.8 3.5 75 18-94 191-271 (303)
68 PF14570 zf-RING_4: RING/Ubox 95.9 0.0069 1.5E-07 40.2 2.6 46 46-92 1-47 (48)
69 PF14447 Prok-RING_4: Prokaryo 95.9 0.0037 8E-08 42.5 1.1 45 43-94 7-51 (55)
70 PF04641 Rtf2: Rtf2 RING-finge 95.8 0.01 2.3E-07 52.8 4.2 71 21-94 84-162 (260)
71 PF07800 DUF1644: Protein of u 95.7 0.013 2.9E-07 48.2 4.0 50 43-94 2-92 (162)
72 PHA02862 5L protein; Provision 95.6 0.012 2.6E-07 47.8 3.2 47 44-94 3-54 (156)
73 KOG1571 Predicted E3 ubiquitin 95.5 0.0082 1.8E-07 55.3 2.1 48 39-94 301-348 (355)
74 PF10367 Vps39_2: Vacuolar sor 95.2 0.0076 1.6E-07 45.7 0.9 34 40-74 75-108 (109)
75 PHA03096 p28-like protein; Pro 95.1 0.013 2.7E-07 53.1 2.3 48 44-91 179-232 (284)
76 KOG1952 Transcription factor N 95.1 0.016 3.6E-07 58.5 3.0 53 39-91 187-245 (950)
77 PF05290 Baculo_IE-1: Baculovi 95.0 0.022 4.7E-07 45.7 3.0 64 27-94 66-133 (140)
78 KOG4185 Predicted E3 ubiquitin 94.9 0.018 3.9E-07 51.8 2.7 47 44-92 4-54 (296)
79 KOG1001 Helicase-like transcri 94.9 0.015 3.3E-07 58.4 2.2 47 44-94 455-501 (674)
80 PF12906 RINGv: RING-variant d 94.8 0.013 2.9E-07 38.6 1.0 42 46-88 1-47 (47)
81 COG5236 Uncharacterized conser 94.6 0.032 6.9E-07 51.4 3.4 53 39-94 57-109 (493)
82 KOG4367 Predicted Zn-finger pr 94.6 0.027 5.8E-07 53.3 2.9 35 41-78 2-36 (699)
83 KOG0826 Predicted E3 ubiquitin 94.5 0.033 7.2E-07 50.8 3.2 50 39-92 296-345 (357)
84 PF02891 zf-MIZ: MIZ/SP-RING z 94.2 0.036 7.8E-07 37.0 2.1 45 44-91 3-50 (50)
85 KOG2817 Predicted E3 ubiquitin 94.1 0.037 8E-07 51.7 2.8 52 40-91 331-383 (394)
86 PF08746 zf-RING-like: RING-li 94.1 0.055 1.2E-06 35.0 2.7 41 46-88 1-43 (43)
87 PF05883 Baculo_RING: Baculovi 93.9 0.03 6.4E-07 45.0 1.6 36 43-78 26-67 (134)
88 KOG3002 Zn finger protein [Gen 93.9 0.043 9.3E-07 50.0 2.8 48 40-94 45-92 (299)
89 KOG3800 Predicted E3 ubiquitin 93.9 0.055 1.2E-06 48.6 3.3 49 45-94 2-52 (300)
90 KOG2114 Vacuolar assembly/sort 93.8 0.036 7.8E-07 56.2 2.3 41 44-91 841-881 (933)
91 COG5175 MOT2 Transcriptional r 93.7 0.053 1.1E-06 49.8 2.9 52 42-94 13-65 (480)
92 KOG3268 Predicted E3 ubiquitin 93.7 0.049 1.1E-06 45.8 2.5 55 40-94 162-229 (234)
93 KOG3970 Predicted E3 ubiquitin 93.7 0.079 1.7E-06 46.1 3.8 50 43-93 50-105 (299)
94 PF10272 Tmpp129: Putative tra 93.1 0.14 3E-06 47.8 4.6 31 64-94 311-352 (358)
95 KOG2932 E3 ubiquitin ligase in 93.0 0.056 1.2E-06 49.1 1.8 43 46-94 93-135 (389)
96 KOG1428 Inhibitor of type V ad 92.7 0.068 1.5E-06 57.2 2.2 69 43-111 3486-3562(3738)
97 KOG1940 Zn-finger protein [Gen 92.4 0.096 2.1E-06 47.1 2.6 52 37-90 152-204 (276)
98 KOG0298 DEAD box-containing he 92.0 0.026 5.7E-07 59.4 -1.6 50 40-93 1150-1199(1394)
99 KOG1812 Predicted E3 ubiquitin 91.8 0.088 1.9E-06 49.6 1.7 53 42-94 145-204 (384)
100 KOG2034 Vacuolar sorting prote 91.8 0.092 2E-06 53.6 1.9 38 40-78 814-851 (911)
101 KOG1100 Predicted E3 ubiquitin 91.7 0.1 2.2E-06 45.1 1.8 39 46-93 161-200 (207)
102 COG5220 TFB3 Cdk activating ki 91.7 0.1 2.2E-06 45.9 1.9 51 42-93 9-64 (314)
103 KOG3899 Uncharacterized conser 90.3 0.18 3.9E-06 45.5 2.1 31 64-94 325-366 (381)
104 KOG3161 Predicted E3 ubiquitin 90.1 0.13 2.8E-06 51.0 1.1 42 43-90 11-54 (861)
105 KOG4362 Transcriptional regula 90.0 0.08 1.7E-06 52.9 -0.3 49 43-94 21-70 (684)
106 PF03854 zf-P11: P-11 zinc fin 87.9 0.18 3.9E-06 33.3 0.3 43 45-94 4-47 (50)
107 PLN02436 cellulose synthase A 85.4 0.7 1.5E-05 48.6 3.1 51 42-93 35-89 (1094)
108 PLN02189 cellulose synthase 85.3 0.85 1.8E-05 47.8 3.6 51 42-93 33-87 (1040)
109 PLN02638 cellulose synthase A 84.6 0.81 1.8E-05 48.1 3.2 51 42-93 16-70 (1079)
110 COG5183 SSM4 Protein involved 84.4 1.2 2.6E-05 45.5 4.0 54 40-94 9-67 (1175)
111 COG5109 Uncharacterized conser 84.2 0.63 1.4E-05 42.6 1.9 51 40-90 333-384 (396)
112 PLN02400 cellulose synthase 83.8 0.93 2E-05 47.7 3.2 51 42-93 35-89 (1085)
113 KOG1815 Predicted E3 ubiquitin 82.5 0.85 1.8E-05 43.7 2.2 55 41-97 68-130 (444)
114 KOG3039 Uncharacterized conser 81.4 1.2 2.7E-05 39.4 2.6 37 39-78 39-75 (303)
115 PLN02195 cellulose synthase A 80.4 5.7 0.00012 41.6 7.4 49 42-91 5-57 (977)
116 PLN02915 cellulose synthase A 78.0 1.8 3.9E-05 45.5 2.9 51 42-93 14-68 (1044)
117 KOG3053 Uncharacterized conser 77.8 1.8 3.9E-05 38.5 2.5 53 40-94 17-83 (293)
118 PF14569 zf-UDP: Zinc-binding 76.5 2.8 6.1E-05 30.6 2.8 51 42-93 8-62 (80)
119 KOG0825 PHD Zn-finger protein 75.0 1.6 3.5E-05 44.5 1.6 53 40-94 93-155 (1134)
120 PF14812 PBP1_TM: Transmembran 74.2 1 2.3E-05 33.1 0.1 28 144-172 43-70 (81)
121 KOG0309 Conserved WD40 repeat- 74.1 1.9 4.1E-05 43.8 1.8 41 44-87 1029-1069(1081)
122 KOG3579 Predicted E3 ubiquitin 72.9 1.5 3.2E-05 39.7 0.7 38 39-79 264-305 (352)
123 KOG1829 Uncharacterized conser 72.5 2 4.4E-05 42.5 1.6 45 40-89 508-557 (580)
124 PF10497 zf-4CXXC_R1: Zinc-fin 72.2 6.1 0.00013 30.4 3.9 48 42-91 6-70 (105)
125 KOG4718 Non-SMC (structural ma 72.1 2 4.4E-05 37.2 1.3 47 43-93 181-227 (235)
126 KOG2068 MOT2 transcription fac 71.7 3 6.6E-05 38.3 2.4 50 43-94 249-299 (327)
127 KOG1609 Protein involved in mR 71.6 4.6 0.0001 36.1 3.6 53 41-94 76-135 (323)
128 PF10571 UPF0547: Uncharacteri 69.8 2.3 5.1E-05 24.4 0.8 8 45-52 2-9 (26)
129 smart00249 PHD PHD zinc finger 69.8 2.4 5.3E-05 26.2 1.1 31 45-75 1-31 (47)
130 PF05605 zf-Di19: Drought indu 68.5 3.5 7.7E-05 27.5 1.7 41 42-92 1-41 (54)
131 PF06844 DUF1244: Protein of u 67.8 3.2 6.9E-05 29.3 1.3 12 67-78 11-22 (68)
132 KOG1812 Predicted E3 ubiquitin 66.6 3.1 6.8E-05 39.2 1.5 43 42-87 305-350 (384)
133 PF07191 zinc-ribbons_6: zinc- 65.4 0.36 7.8E-06 34.5 -3.9 42 44-95 2-43 (70)
134 KOG0824 Predicted E3 ubiquitin 63.4 2 4.3E-05 39.1 -0.4 52 39-94 101-152 (324)
135 PF04216 FdhE: Protein involve 63.1 0.94 2E-05 40.9 -2.6 50 39-92 168-221 (290)
136 KOG0801 Predicted E3 ubiquitin 61.2 2.9 6.3E-05 34.8 0.2 30 41-70 175-204 (205)
137 KOG0827 Predicted E3 ubiquitin 59.4 0.58 1.3E-05 43.9 -4.7 49 44-94 197-246 (465)
138 KOG2231 Predicted E3 ubiquitin 58.4 8.3 0.00018 38.9 2.8 47 45-94 2-53 (669)
139 PF14446 Prok-RING_1: Prokaryo 58.1 13 0.00028 25.2 2.9 32 43-74 5-37 (54)
140 KOG3113 Uncharacterized conser 55.4 14 0.00031 32.9 3.5 50 41-94 109-159 (293)
141 KOG0269 WD40 repeat-containing 55.3 10 0.00022 38.7 2.8 44 45-91 781-826 (839)
142 PF07975 C1_4: TFIIH C1-like d 52.8 15 0.00032 24.6 2.5 27 61-89 24-50 (51)
143 KOG0006 E3 ubiquitin-protein l 52.5 9.2 0.0002 35.3 1.9 36 40-78 218-255 (446)
144 KOG4185 Predicted E3 ubiquitin 52.3 2.7 5.8E-05 37.7 -1.6 47 43-91 207-265 (296)
145 KOG2169 Zn-finger transcriptio 52.1 9.5 0.00021 38.4 2.1 52 39-94 302-357 (636)
146 KOG3799 Rab3 effector RIM1 and 51.1 5.3 0.00011 32.3 0.1 29 40-75 62-90 (169)
147 PF06524 NOA36: NOA36 protein; 49.8 12 0.00026 33.6 2.1 48 43-94 171-221 (314)
148 PF13901 DUF4206: Domain of un 49.6 15 0.00034 31.3 2.8 43 40-89 149-196 (202)
149 PRK03564 formate dehydrogenase 48.4 6.3 0.00014 36.2 0.2 48 40-91 184-235 (309)
150 KOG2066 Vacuolar assembly/sort 46.5 8.1 0.00018 39.5 0.6 35 44-78 785-823 (846)
151 TIGR01562 FdhE formate dehydro 46.0 6 0.00013 36.2 -0.3 47 41-91 182-233 (305)
152 COG3813 Uncharacterized protei 46.0 16 0.00034 26.4 1.9 45 46-94 8-53 (84)
153 COG3492 Uncharacterized protei 44.1 14 0.0003 27.9 1.4 12 67-78 42-53 (104)
154 PF06906 DUF1272: Protein of u 43.5 38 0.00083 23.2 3.3 45 45-93 7-52 (57)
155 KOG3842 Adaptor protein Pellin 43.2 27 0.00058 32.3 3.4 52 40-94 338-415 (429)
156 KOG2979 Protein involved in DN 42.7 14 0.00029 33.1 1.4 49 41-91 174-222 (262)
157 PF10146 zf-C4H2: Zinc finger- 42.6 20 0.00043 31.5 2.4 27 68-96 196-222 (230)
158 PF01363 FYVE: FYVE zinc finge 42.4 8.2 0.00018 26.7 -0.0 34 43-76 9-43 (69)
159 KOG2807 RNA polymerase II tran 42.0 25 0.00054 32.6 3.0 44 45-90 332-375 (378)
160 PRK11088 rrmA 23S rRNA methylt 41.0 18 0.00039 31.9 1.9 25 44-68 3-27 (272)
161 cd00065 FYVE FYVE domain; Zinc 39.9 20 0.00044 23.5 1.6 34 45-78 4-38 (57)
162 smart00647 IBR In Between Ring 39.3 6.2 0.00013 26.5 -1.1 34 45-78 20-60 (64)
163 smart00064 FYVE Protein presen 38.5 26 0.00057 24.0 2.1 36 43-78 10-46 (68)
164 PF04710 Pellino: Pellino; In 37.5 11 0.00024 35.7 0.0 33 62-94 363-402 (416)
165 KOG2113 Predicted RNA binding 33.4 33 0.00071 31.7 2.3 45 42-93 342-387 (394)
166 KOG4451 Uncharacterized conser 33.3 32 0.0007 30.3 2.2 26 68-95 251-276 (286)
167 PLN02705 beta-amylase 32.4 1E+02 0.0022 31.1 5.7 25 214-238 86-110 (681)
168 PF00628 PHD: PHD-finger; Int 31.3 21 0.00045 22.9 0.6 45 45-89 1-49 (51)
169 PF02318 FYVE_2: FYVE-type zin 31.3 24 0.00051 27.4 1.0 48 42-90 53-102 (118)
170 KOG1356 Putative transcription 30.6 13 0.00028 38.4 -0.8 33 43-77 229-262 (889)
171 KOG1815 Predicted E3 ubiquitin 30.2 21 0.00045 34.2 0.6 18 61-78 181-198 (444)
172 COG5242 TFB4 RNA polymerase II 29.7 23 0.00049 31.3 0.7 14 81-94 273-286 (296)
173 KOG2462 C2H2-type Zn-finger pr 29.6 19 0.00041 32.4 0.2 53 41-94 159-227 (279)
174 COG4647 AcxC Acetone carboxyla 29.6 27 0.00059 28.1 1.0 21 48-71 62-82 (165)
175 PF14353 CpXC: CpXC protein 29.4 30 0.00065 27.0 1.3 48 44-94 2-50 (128)
176 PF10446 DUF2457: Protein of u 29.4 39 0.00084 32.5 2.2 15 161-175 98-112 (458)
177 KOG3183 Predicted Zn-finger pr 28.9 24 0.00052 31.2 0.7 49 44-94 9-67 (250)
178 PF13240 zinc_ribbon_2: zinc-r 28.0 8.7 0.00019 21.3 -1.4 8 83-90 14-21 (23)
179 PF10446 DUF2457: Protein of u 27.9 34 0.00074 32.9 1.5 13 66-78 3-17 (458)
180 smart00734 ZnF_Rad18 Rad18-lik 27.7 15 0.00032 20.9 -0.6 11 84-94 3-13 (26)
181 TIGR00622 ssl1 transcription f 26.2 65 0.0014 25.2 2.6 44 44-89 56-110 (112)
182 KOG4218 Nuclear hormone recept 26.0 50 0.0011 31.0 2.2 47 42-91 14-76 (475)
183 PF13832 zf-HC5HC2H_2: PHD-zin 25.7 80 0.0017 23.7 3.1 32 42-75 54-87 (110)
184 PF04568 IATP: Mitochondrial A 25.1 1.9E+02 0.004 22.1 4.9 23 220-242 74-100 (100)
185 PF04423 Rad50_zn_hook: Rad50 24.7 24 0.00053 23.3 -0.0 11 84-94 22-32 (54)
186 KOG0006 E3 ubiquitin-protein l 24.6 53 0.0011 30.5 2.1 36 42-78 314-356 (446)
187 KOG4443 Putative transcription 24.4 37 0.00081 34.2 1.2 48 41-90 16-70 (694)
188 PF10083 DUF2321: Uncharacteri 24.0 55 0.0012 27.1 1.9 25 65-94 27-51 (158)
189 TIGR00373 conserved hypothetic 22.9 23 0.00049 29.1 -0.5 36 39-94 105-140 (158)
190 smart00132 LIM Zinc-binding do 21.2 91 0.002 18.0 2.1 36 46-92 2-37 (39)
191 PRK06266 transcription initiat 21.1 33 0.00071 28.8 0.1 35 40-94 114-148 (178)
192 PRK11595 DNA utilization prote 20.3 79 0.0017 27.3 2.3 38 45-92 7-44 (227)
193 PF10235 Cript: Microtubule-as 20.3 56 0.0012 24.5 1.2 38 43-94 44-81 (90)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.17 E-value=7.6e-12 Score=81.58 Aligned_cols=43 Identities=33% Similarity=0.831 Sum_probs=36.0
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCC
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR 89 (247)
.|+||++.|...+.+..++|+|.||..||..|+.. ..+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 59999999655566667899999999999999984 57999997
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.15 E-value=2.5e-11 Score=78.59 Aligned_cols=40 Identities=33% Similarity=0.904 Sum_probs=30.5
Q ss_pred ccccccCccCCCceEecCCCChhhHHHHHHHHhcCCC--CCCCCC
Q 025884 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRN--PTCPQC 88 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~--~~CP~C 88 (247)
|+||+++ +.+|+ +++|||+||..||.+|...... ..||.|
T Consensus 1 CpiC~~~--~~~Pv-~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDL--FKDPV-SLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB---SSEE-E-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchh--hCCcc-ccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999 99999 5699999999999998874322 579988
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.13 E-value=6.3e-11 Score=100.16 Aligned_cols=53 Identities=32% Similarity=0.740 Sum_probs=43.5
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc--------------CCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--------------VRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--------------~~~~~CP~CR~~~~~ 94 (247)
.....+.|+||++. +.+|+ +++|||.||..||..|+.. .....||+||.++..
T Consensus 14 ~~~~~~~CpICld~--~~dPV-vT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQ--VRDPV-VTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCc--CCCcE-EcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 44467899999999 88888 5699999999999999752 123579999999875
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.06 E-value=1.2e-10 Score=102.05 Aligned_cols=59 Identities=32% Similarity=0.813 Sum_probs=44.6
Q ss_pred CCcCcccccccCccCCCc-----eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCccccccccc
Q 025884 41 NHGGVCAICLDKTVLQET-----ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSL 101 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p-----v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~~~~~~l 101 (247)
.....|+||++.+..... ..+.+|+|.||..||..|+. ...+||+||.++..+..++.+
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEeeEEeeeeee
Confidence 445789999997321110 23568999999999999997 577999999999876666543
No 5
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.04 E-value=1.5e-10 Score=73.62 Aligned_cols=39 Identities=44% Similarity=1.197 Sum_probs=33.5
Q ss_pred ccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCC
Q 025884 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~C 88 (247)
|+||++. +.+|+.+++|||.||..||.+|+.. ...||+|
T Consensus 1 C~iC~~~--~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDE--LRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCc--ccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 8999999 8889778899999999999999983 6899988
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.98 E-value=3.6e-10 Score=75.62 Aligned_cols=46 Identities=30% Similarity=0.890 Sum_probs=38.5
Q ss_pred cCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
+..|.||++. ..+++ ++||||. ||..|+.+|+. ....||+||.++.
T Consensus 2 ~~~C~iC~~~--~~~~~-~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFEN--PRDVV-LLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSS--BSSEE-EETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCcc--CCceE-EeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 4579999998 66666 6799999 99999999998 6889999999875
No 7
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.96 E-value=4.7e-10 Score=71.75 Aligned_cols=41 Identities=29% Similarity=1.036 Sum_probs=36.6
Q ss_pred ccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCC
Q 025884 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~C 88 (247)
|+||++. +..++.+++|||.||..||..|+.......||+|
T Consensus 1 C~iC~~~--~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEP--FEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSB--CSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcc--ccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999 7888878899999999999999985567789988
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.9e-10 Score=98.28 Aligned_cols=58 Identities=28% Similarity=0.769 Sum_probs=47.1
Q ss_pred ccccccCCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 32 ADNREMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 32 ~e~~~~~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+...........|.+|++. ..+|. .+||||.||-+||..|.. ....||+||..+.+
T Consensus 228 ~s~~~~~i~~a~~kC~LCLe~--~~~pS-aTpCGHiFCWsCI~~w~~--ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 228 DSNSLSSIPEATRKCSLCLEN--RSNPS-ATPCGHIFCWSCILEWCS--EKAECPLCREKFQP 285 (293)
T ss_pred hccCCccCCCCCCceEEEecC--CCCCC-cCcCcchHHHHHHHHHHc--cccCCCcccccCCC
Confidence 444444556666899999998 77887 559999999999999998 45669999999876
No 9
>PHA02926 zinc finger-like protein; Provisional
Probab=98.94 E-value=6.5e-10 Score=95.36 Aligned_cols=62 Identities=24% Similarity=0.613 Sum_probs=45.2
Q ss_pred CCCCcCcccccccCccCC------CceEecCCCChhhHHHHHHHHhcC----CCCCCCCCCcCCcccccccc
Q 025884 39 FGNHGGVCAICLDKTVLQ------ETALVKGCEHAYCATCILRWASYV----RNPTCPQCKHPFEFLHVHRS 100 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~------~pv~~~~CgH~FC~~Ci~~w~~~~----~~~~CP~CR~~~~~~~~~~~ 100 (247)
..+.+.+|+||++.+-.. ....+.+|+|.||..||..|.... ....||+||..+..+.+++.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf 237 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKF 237 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccc
Confidence 345567899999973111 113367999999999999999742 23569999999987666653
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.89 E-value=1.4e-09 Score=75.67 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=40.6
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+.|+||.+. +.+|+ +++|||+||..||..|+.. ...||.|+.++..
T Consensus 2 ~~Cpi~~~~--~~~Pv-~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEV--MKDPV-ILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCc--CCCCE-ECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCCh
Confidence 679999999 88898 5699999999999999983 6789999998753
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.5e-09 Score=93.58 Aligned_cols=52 Identities=29% Similarity=0.693 Sum_probs=44.9
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc-CCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-VRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~-~~~~~CP~CR~~~~~ 94 (247)
....+.|.||++. ..+|| +..|||.||-.||.+|+.. .....||+|+..+..
T Consensus 44 ~~~~FdCNICLd~--akdPV-vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 44 DGGFFDCNICLDL--AKDPV-VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCceeeeeeccc--cCCCE-EeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 5667899999999 99999 5589999999999999984 345678999999876
No 12
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=1.1e-09 Score=102.31 Aligned_cols=65 Identities=26% Similarity=0.552 Sum_probs=51.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--ccccccccCCchhhH
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSDYMFE 109 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~d~~~e 109 (247)
....+.|+||++. +..|+ +++|||.||..||..|+. ....||.|+.++.. +..+..+.++...+.
T Consensus 23 Le~~l~C~IC~d~--~~~Pv-itpCgH~FCs~CI~~~l~--~~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 23 LDTSLRCHICKDF--FDVPV-LTSCSHTFCSLCIRRCLS--NQPKCPLCRAEDQESKLRSNWLVSEIVESFK 89 (397)
T ss_pred cccccCCCcCchh--hhCcc-CCCCCCchhHHHHHHHHh--CCCCCCCCCCccccccCccchHHHHHHHHHH
Confidence 4566789999999 78888 679999999999999997 35689999999865 555666665544443
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.87 E-value=2.3e-09 Score=68.45 Aligned_cols=45 Identities=36% Similarity=1.048 Sum_probs=37.7
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
.|+||++. +..++.+.+|+|.||..|+..|+.. ....||.|+..+
T Consensus 1 ~C~iC~~~--~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEE--FREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchh--hhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 49999998 5677767679999999999999984 467899998763
No 14
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.82 E-value=3.7e-09 Score=76.50 Aligned_cols=43 Identities=33% Similarity=0.760 Sum_probs=33.1
Q ss_pred cccccccCccC----------CCceEecCCCChhhHHHHHHHHhcCCCCCCCCCC
Q 025884 45 VCAICLDKTVL----------QETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (247)
Q Consensus 45 ~C~ICl~~~~~----------~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR 89 (247)
.|+||++.|.. .-++...+|||.||..||.+|+. ...+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK--QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT--TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh--cCCcCCCCC
Confidence 49999998511 23445668999999999999998 566999997
No 15
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.82 E-value=1.8e-09 Score=97.40 Aligned_cols=63 Identities=27% Similarity=0.609 Sum_probs=50.1
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--ccccccccCCchhh
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGSDYMF 108 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~d~~~ 108 (247)
..-+.|.||.++ +..|+ +.||+|+||..||..++. ....||.|+.++.. +..++.+..+...+
T Consensus 21 D~lLRC~IC~ey--f~ip~-itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 21 DDLLRCGICFEY--FNIPM-ITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVTESDLRNNRILDEIVKSL 85 (442)
T ss_pred HHHHHHhHHHHH--hcCce-eccccchHHHHHHHHHhc--cCCCCCceecccchhhhhhhhHHHHHHHHH
Confidence 345679999999 78888 569999999999999998 57789999999876 66666555553333
No 16
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.7e-09 Score=97.68 Aligned_cols=50 Identities=28% Similarity=0.687 Sum_probs=43.9
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+|+||++.|...+.+.++||.|.||..||..|+.. ....||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~-~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ-TRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhh-cCccCCCCCCcCCC
Confidence 589999999878888889999999999999999984 45679999997654
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.4e-09 Score=85.36 Aligned_cols=52 Identities=25% Similarity=0.633 Sum_probs=40.8
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...-+.|||||+.+.-..|+ ...|||.||..||...+. ....||+|++.+..
T Consensus 128 ~~~~~~CPiCl~~~sek~~v-sTkCGHvFC~~Cik~alk--~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPV-STKCGHVFCSQCIKDALK--NTNKCPTCRKKITH 179 (187)
T ss_pred cccccCCCceecchhhcccc-ccccchhHHHHHHHHHHH--hCCCCCCcccccch
Confidence 33447899999984333444 469999999999999887 57889999987764
No 18
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.66 E-value=1.3e-08 Score=90.26 Aligned_cols=48 Identities=27% Similarity=0.602 Sum_probs=41.5
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.-+.|.||-+. +..|+ ..+|||+||..||.+++. ....||+||.++..
T Consensus 24 s~lrC~IC~~~--i~ip~-~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~e 71 (391)
T COG5432 24 SMLRCRICDCR--ISIPC-ETTCGHTFCSLCIRRHLG--TQPFCPVCREDPCE 71 (391)
T ss_pred hHHHhhhhhhe--eecce-ecccccchhHHHHHHHhc--CCCCCccccccHHh
Confidence 34579999999 77777 569999999999999997 57889999999876
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.65 E-value=3.2e-08 Score=64.47 Aligned_cols=44 Identities=25% Similarity=0.804 Sum_probs=35.7
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
.|+||+..+....+..+++|||+||..|+..+. .....||+|+.
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 399999985334455688999999999999987 25788999974
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.62 E-value=4.4e-08 Score=60.27 Aligned_cols=39 Identities=44% Similarity=1.189 Sum_probs=32.7
Q ss_pred ccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCC
Q 025884 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~C 88 (247)
|+||++. ...++ +++|+|.||..|+..|+. .....||.|
T Consensus 1 C~iC~~~--~~~~~-~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPV-VLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcE-EecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 8899998 66666 669999999999999997 356779987
No 21
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.59 E-value=2.5e-08 Score=72.02 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=40.8
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--ccccc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHR 99 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~ 99 (247)
+.|.|+|+.++ +.+|| ++++||+|+..||..|+.. +..+||.|+.++.. +.+|.
T Consensus 3 ~~f~CpIt~~l--M~dPV-i~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~~l~pn~ 58 (73)
T PF04564_consen 3 DEFLCPITGEL--MRDPV-ILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSESDLIPNR 58 (73)
T ss_dssp GGGB-TTTSSB---SSEE-EETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGGGSEE-H
T ss_pred cccCCcCcCcH--hhCce-eCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcccceECH
Confidence 46889999999 99999 5699999999999999984 58899999998875 44443
No 22
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.58 E-value=6.4e-08 Score=71.57 Aligned_cols=51 Identities=29% Similarity=0.711 Sum_probs=37.8
Q ss_pred cCcccccccCccC----------CCceEecCCCChhhHHHHHHHHhcC-CCCCCCCCCcCCc
Q 025884 43 GGVCAICLDKTVL----------QETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFE 93 (247)
Q Consensus 43 ~~~C~ICl~~~~~----------~~pv~~~~CgH~FC~~Ci~~w~~~~-~~~~CP~CR~~~~ 93 (247)
+..|+||...|.. .-|+..-.|+|.||..||.+|+... ....||+||.++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3457777776521 1244456899999999999999853 3578999999875
No 23
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.1e-08 Score=90.49 Aligned_cols=52 Identities=31% Similarity=0.758 Sum_probs=41.4
Q ss_pred CCCcCcccccccCc-cCC----------CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKT-VLQ----------ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~-~~~----------~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.+..|.||++.+ -.. .|. .+||||.||..|+..|++ +..+||+||.|+-.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pK-rLpCGHilHl~CLknW~E--RqQTCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPK-RLPCGHILHLHCLKNWLE--RQQTCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcc-cccccceeeHHHHHHHHH--hccCCCcccCcccc
Confidence 67788999999972 111 123 579999999999999998 78899999999543
No 24
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.8e-08 Score=87.85 Aligned_cols=52 Identities=25% Similarity=0.666 Sum_probs=42.0
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+..|+||++.|--.+.+..+||.|.||..|+..|+. +-...||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~-~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL-GYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHh-hhcccCCccCCCCCC
Confidence 3467999999753344566789999999999999997 246789999998763
No 25
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.53 E-value=8.4e-09 Score=72.06 Aligned_cols=54 Identities=37% Similarity=0.874 Sum_probs=26.7
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--cccccccc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLD 102 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~ 102 (247)
.+.|++|.++ +..|+.+..|.|.||..||..-+. ..||+|..|... +..|+.++
T Consensus 7 lLrCs~C~~~--l~~pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Paw~qD~~~NrqLd 62 (65)
T PF14835_consen 7 LLRCSICFDI--LKEPVCLGGCEHIFCSSCIRDCIG----SECPVCHTPAWIQDIQINRQLD 62 (65)
T ss_dssp TTS-SSS-S----SS-B---SSS--B-TTTGGGGTT----TB-SSS--B-S-SS----HHHH
T ss_pred hcCCcHHHHH--hcCCceeccCccHHHHHHhHHhcC----CCCCCcCChHHHHHHHhhhhhh
Confidence 4679999999 899998889999999999977543 359999998743 66666554
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.52 E-value=6.5e-08 Score=62.90 Aligned_cols=41 Identities=24% Similarity=0.737 Sum_probs=22.3
Q ss_pred ccccccCccCCCceEecCCCChhhHHHHHHHHhcC--CCCCCC
Q 025884 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYV--RNPTCP 86 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~--~~~~CP 86 (247)
|+||.+.-...++..+++|||+||..||.+|+... ....||
T Consensus 1 CpIc~e~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 89999931223333467999999999999998743 356677
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.1e-08 Score=91.83 Aligned_cols=49 Identities=29% Similarity=0.788 Sum_probs=40.1
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcC---CCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV---RNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~---~~~~CP~CR~~~~~ 94 (247)
...||||++. ..-|+.+ .|||.||..||.+++... .-..||+|+..|..
T Consensus 186 ~~~CPICL~~--~~~p~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEP--PSVPVRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCC--CCccccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7789999998 7777744 699999999999977632 33569999998876
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.1e-07 Score=81.70 Aligned_cols=49 Identities=24% Similarity=0.720 Sum_probs=40.6
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHH-HHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILR-WASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~-w~~~~~~~~CP~CR~~~~~ 94 (247)
-+..|+||++. ...|. ..+|||.||..||.. |... ..-.||+||..+..
T Consensus 214 ~d~kC~lC~e~--~~~ps-~t~CgHlFC~~Cl~~~~t~~-k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEE--PEVPS-CTPCGHLFCLSCLLISWTKK-KYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecc--cCCcc-cccccchhhHHHHHHHHHhh-ccccCchhhhhccc
Confidence 46789999999 78888 559999999999999 8762 34459999998764
No 29
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.6e-07 Score=81.75 Aligned_cols=46 Identities=28% Similarity=0.730 Sum_probs=39.3
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
..+.+.|+||++. +..|+ +++|+|+||..||..++. ....||.||.
T Consensus 10 ~~~~~~C~iC~~~--~~~p~-~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEY--FREPV-LLPCGHNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHH--hhcCc-cccccchHhHHHHHHhcC--CCcCCcccCC
Confidence 4467789999999 77774 789999999999999876 5688999994
No 30
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.8e-08 Score=88.77 Aligned_cols=52 Identities=31% Similarity=0.669 Sum_probs=43.9
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..-.+.|+||+++ +...+++..|.|.||.+||..-+.. .++.||.||..+..
T Consensus 40 ~~~~v~c~icl~l--lk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSL--LKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHH--HHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhccc
Confidence 4456789999999 6666778899999999999886663 68899999998876
No 31
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=6.1e-07 Score=81.14 Aligned_cols=50 Identities=22% Similarity=0.584 Sum_probs=36.3
Q ss_pred CcccccccCccCCCc--eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQET--ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~~p--v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..||||....-+... +.+.+|||.||..||..++.. +...||.|+.++..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 479999994212222 223379999999999996652 56689999998865
No 32
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.27 E-value=6e-07 Score=82.88 Aligned_cols=52 Identities=25% Similarity=0.708 Sum_probs=42.2
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
++....|.||-+. .. .+.+-||||..|..|+..|.......+||.||..+.-
T Consensus 366 gsTFeLCKICaen--dK-dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 366 GSTFELCKICAEN--DK-DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred cchHHHHHHhhcc--CC-CcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 3344579999997 43 4558899999999999999865458899999999875
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.4e-07 Score=89.42 Aligned_cols=50 Identities=28% Similarity=0.749 Sum_probs=40.4
Q ss_pred CCCcCcccccccCccCCCc----eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 40 GNHGGVCAICLDKTVLQET----ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p----v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
......|+||.+. +... ...++|+|.||..|+..|++ ...+||.||..+.
T Consensus 288 ~~~~~~C~IC~e~--l~~~~~~~~~rL~C~Hifh~~CL~~W~e--r~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEE--LHSGHNITPKRLPCGHIFHDSCLRSWFE--RQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechh--hccccccccceeecccchHHHHHHHHHH--HhCcCCcchhhhh
Confidence 3446689999998 4442 33679999999999999999 6889999999543
No 34
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=9.8e-07 Score=87.22 Aligned_cols=51 Identities=22% Similarity=0.663 Sum_probs=43.2
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...-++||+|... +.+.+ +..|+|.||..|+...+.. ....||.|..+|..
T Consensus 640 yK~~LkCs~Cn~R--~Kd~v-I~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 640 YKELLKCSVCNTR--WKDAV-ITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGA 690 (698)
T ss_pred HHhceeCCCccCc--hhhHH-HHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCc
Confidence 4456789999987 77777 7799999999999998875 67889999999875
No 35
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.10 E-value=1.3e-06 Score=78.96 Aligned_cols=53 Identities=23% Similarity=0.588 Sum_probs=46.7
Q ss_pred CCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...+...+|.+|..+ +.++.++..|-|+||..||..++. ....||.|...+..
T Consensus 10 ~~~n~~itC~LC~GY--liDATTI~eCLHTFCkSCivk~l~--~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 10 TELNPHITCRLCGGY--LIDATTITECLHTFCKSCIVKYLE--ESKYCPTCDIVIHK 62 (331)
T ss_pred hhcccceehhhccce--eecchhHHHHHHHHHHHHHHHHHH--HhccCCccceeccC
Confidence 346778899999999 888888899999999999999998 48899999988765
No 36
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.09 E-value=5.3e-07 Score=90.44 Aligned_cols=50 Identities=22% Similarity=0.662 Sum_probs=39.8
Q ss_pred cCcccccccCcc-----CCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 43 GGVCAICLDKTV-----LQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 43 ~~~C~ICl~~~~-----~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
...|+||+.++. ++... ...|.|-||..|+..|+..++..+||+||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskr-C~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKR-CATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccc-cchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 346999998753 22222 357999999999999999878899999998765
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.6e-06 Score=75.16 Aligned_cols=68 Identities=21% Similarity=0.481 Sum_probs=49.2
Q ss_pred CCCCcCcccccccCccCCC-------ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc-ccccccccCCch
Q 025884 39 FGNHGGVCAICLDKTVLQE-------TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF-LHVHRSLDGSDY 106 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~-------pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~-~~~~~~l~~~d~ 106 (247)
...++..|+||-..|.... ....+.|+|.||-.||..|...+...+||.|+..++. .....++...+.
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWekph~ 295 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEKPHV 295 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccccchh
Confidence 3456668999988753322 3345799999999999999987778999999998876 333334444433
No 38
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.7e-06 Score=74.32 Aligned_cols=57 Identities=26% Similarity=0.542 Sum_probs=46.7
Q ss_pred cCCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCccc
Q 025884 37 MGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFL 95 (247)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~ 95 (247)
.+......+|++|.+. ...|.++.+|+|.||..||..-+......+||.|..++.++
T Consensus 233 ss~~t~~~~C~~Cg~~--PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEP--PTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cccccCCceeeccCCC--CCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 3456677899999998 88899888899999999998855544578999999887643
No 39
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.3e-06 Score=75.51 Aligned_cols=48 Identities=25% Similarity=0.536 Sum_probs=40.1
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...|+||+.. ...|+ .++|+|.||.-||..-... ...+|++||.+|+.
T Consensus 7 ~~eC~IC~nt--~n~Pv-~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNT--GNCPV-NLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeecc--CCcCc-cccccchhhhhhhcchhhc-CCCCCceecCCCCc
Confidence 3469999998 77887 7799999999999884442 56789999999986
No 40
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.92 E-value=6.5e-06 Score=56.71 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=33.3
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQ 87 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~ 87 (247)
..-.+.|||.+.. +.+|+....|+|.|....|..|+.......||+
T Consensus 8 ~~~~~~CPiT~~~--~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQP--FEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCCh--hhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4456789999999 899998889999999999999996446778998
No 41
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.88 E-value=1.8e-05 Score=52.81 Aligned_cols=44 Identities=32% Similarity=0.698 Sum_probs=34.4
Q ss_pred cccccccCccCCCceEecCCC-----ChhhHHHHHHHHhcCCCCCCCCCC
Q 025884 45 VCAICLDKTVLQETALVKGCE-----HAYCATCILRWASYVRNPTCPQCK 89 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~Cg-----H~FC~~Ci~~w~~~~~~~~CP~CR 89 (247)
.|.||++.....++. +.||. |.+|..||.+|+......+||+|.
T Consensus 1 ~CrIC~~~~~~~~~l-~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCee-EeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 489999832245555 67995 889999999999866677999994
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=8.7e-06 Score=75.03 Aligned_cols=57 Identities=28% Similarity=0.862 Sum_probs=42.5
Q ss_pred CCCcCcccccccCccCCCce-------EecCCCChhhHHHHHHHHhcCC-----CCCCCCCCcCCcccccc
Q 025884 40 GNHGGVCAICLDKTVLQETA-------LVKGCEHAYCATCILRWASYVR-----NPTCPQCKHPFEFLHVH 98 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv-------~~~~CgH~FC~~Ci~~w~~~~~-----~~~CP~CR~~~~~~~~~ 98 (247)
.....+|.||++.+ .+.. .+.+|.|.||..||..|-...+ ...||.||.+...+.+.
T Consensus 158 ~s~~k~CGICme~i--~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 158 KSSEKECGICMETI--NEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred ccccccceehhhhc--cccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 35677899999984 2222 1357999999999999986434 57899999987764443
No 43
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.85 E-value=1.4e-05 Score=58.11 Aligned_cols=35 Identities=26% Similarity=0.702 Sum_probs=29.0
Q ss_pred ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 58 TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 58 pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
|+..--|.|.||..||.+|+. ....||+++.++..
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~--Tk~~CPld~q~w~~ 82 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLD--TKGVCPLDRQTWVL 82 (88)
T ss_pred eEEEEecchHHHHHHHHHHHh--hCCCCCCCCceeEE
Confidence 344457999999999999998 47789999998753
No 44
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.85 E-value=7.8e-06 Score=76.62 Aligned_cols=53 Identities=21% Similarity=0.577 Sum_probs=40.1
Q ss_pred cCCCCCcCcccccccCccCCC-ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 37 MGFGNHGGVCAICLDKTVLQE-TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
.....+-.+||||++.++... -+.+..|.|.||..|+..|. ..+||+||....
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~----~~scpvcR~~q~ 222 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW----DSSCPVCRYCQS 222 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc----cCcChhhhhhcC
Confidence 334567788999999843222 23567999999999999995 467999998654
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=8.6e-06 Score=55.06 Aligned_cols=47 Identities=28% Similarity=0.704 Sum_probs=38.4
Q ss_pred CcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..|.||++. ..+.| +..|||. +|..|-.+..+. ....||+||.++..
T Consensus 8 dECTICye~--pvdsV-lYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEH--PVDSV-LYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccC--cchHH-HHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHHH
Confidence 469999998 77777 6799995 799998885552 57789999999864
No 46
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.3e-05 Score=73.98 Aligned_cols=49 Identities=24% Similarity=0.598 Sum_probs=36.0
Q ss_pred cccccccCccCCCceEec-CCCChhhHHHHHHHHhcCCC-CCCCCCCcCCc
Q 025884 45 VCAICLDKTVLQETALVK-GCEHAYCATCILRWASYVRN-PTCPQCKHPFE 93 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~-~CgH~FC~~Ci~~w~~~~~~-~~CP~CR~~~~ 93 (247)
.|.||.+.++....+..+ .|||+||..|+.+|+..... ..||+|+..+.
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 599997764333333333 49999999999999986555 58999995544
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.9e-05 Score=74.80 Aligned_cols=54 Identities=26% Similarity=0.698 Sum_probs=39.7
Q ss_pred CCCcCcccccccCccCCCc--------------eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQET--------------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p--------------v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+....|+||+..|++... ..+.||.|.||..|+.+|... -+..||+||.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~-ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT-YKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh-hcccCCccCCCCCC
Confidence 3445569999997633211 123599999999999999983 35689999999763
No 48
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.1e-05 Score=56.72 Aligned_cols=49 Identities=29% Similarity=0.633 Sum_probs=35.2
Q ss_pred cccccccCccCC----------CceEecCCCChhhHHHHHHHHhcC-CCCCCCCCCcCCc
Q 025884 45 VCAICLDKTVLQ----------ETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFE 93 (247)
Q Consensus 45 ~C~ICl~~~~~~----------~pv~~~~CgH~FC~~Ci~~w~~~~-~~~~CP~CR~~~~ 93 (247)
+|.||.-.|+.. -|+..--|.|.|+..||.+|+... +...||+||..+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 677777664221 133334699999999999999743 3467999999875
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=2.7e-05 Score=73.13 Aligned_cols=50 Identities=22% Similarity=0.587 Sum_probs=43.4
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....+.|.||+.. +..|+.+ ||||.||..||.+-+. ....||.||.++..
T Consensus 81 ~~sef~c~vc~~~--l~~pv~t-pcghs~c~~Cl~r~ld--~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRA--LYPPVVT-PCGHSFCLECLDRSLD--QETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhh--cCCCccc-cccccccHHHHHHHhc--cCCCCccccccccc
Confidence 3667899999999 8899855 9999999999999665 67889999999876
No 50
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=4.3e-05 Score=69.96 Aligned_cols=49 Identities=33% Similarity=0.798 Sum_probs=39.9
Q ss_pred CCcCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.....|-||+.. ..+.+ ++||.|. .|..|-....- +.+.||+||.+|..
T Consensus 288 ~~gkeCVIClse--~rdt~-vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSE--SRDTV-VLPCRHLCLCSGCAKSLRY--QTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecC--CcceE-EecchhhehhHhHHHHHHH--hhcCCCccccchHh
Confidence 457789999998 66666 7899995 79999877553 46789999999875
No 51
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.55 E-value=3.3e-05 Score=72.72 Aligned_cols=51 Identities=27% Similarity=0.747 Sum_probs=44.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+.+.|++|..+ +.+|+++..|||.||..|+..|.. ....||.|+..+..
T Consensus 18 ~~~~l~C~~C~~v--l~~p~~~~~cgh~fC~~C~~~~~~--~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSV--LRDPVQTTTCGHRFCAGCLLESLS--NHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCcccccc--ccCCCCCCCCCCcccccccchhhc--cCcCCcccccccch
Confidence 4567889999999 888986569999999999999998 47889999888654
No 52
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.48 E-value=2.1e-05 Score=56.37 Aligned_cols=51 Identities=22% Similarity=0.568 Sum_probs=23.1
Q ss_pred cCcccccccCcc--CCCceEe---cCCCChhhHHHHHHHHhc--CCC-------CCCCCCCcCCc
Q 025884 43 GGVCAICLDKTV--LQETALV---KGCEHAYCATCILRWASY--VRN-------PTCPQCKHPFE 93 (247)
Q Consensus 43 ~~~C~ICl~~~~--~~~pv~~---~~CgH~FC~~Ci~~w~~~--~~~-------~~CP~CR~~~~ 93 (247)
...|+||+..+. ...|..+ ..|++.||..||..|+.. ... -.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 356999999742 1123322 379999999999999973 111 24999999865
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.37 E-value=3.9e-05 Score=76.17 Aligned_cols=57 Identities=26% Similarity=0.454 Sum_probs=39.6
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCccccccccccC
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLDG 103 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~~~~~~l~~ 103 (247)
.|++|+..+....-..-.+|+|.||..||..|.. ...+||+||..|..+.+.....+
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR--~aqTCPiDR~EF~~v~V~eS~~~ 181 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR--CAQTCPVDRGEFGEVKVLESTGI 181 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhh--hcccCchhhhhhheeeeeccccc
Confidence 4777766521111122358999999999999998 57899999999987555444333
No 54
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.20 E-value=0.00021 Score=60.67 Aligned_cols=49 Identities=22% Similarity=0.599 Sum_probs=39.7
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
..-.|.|.||... +..|+ +..|||.||..|..+-.. ....|-+|.....
T Consensus 193 e~IPF~C~iCKkd--y~spv-vt~CGH~FC~~Cai~~y~--kg~~C~~Cgk~t~ 241 (259)
T COG5152 193 EKIPFLCGICKKD--YESPV-VTECGHSFCSLCAIRKYQ--KGDECGVCGKATY 241 (259)
T ss_pred CCCceeehhchhh--ccchh-hhhcchhHHHHHHHHHhc--cCCcceecchhhc
Confidence 3345789999999 78888 569999999999988665 5778999977643
No 55
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00032 Score=64.32 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=41.4
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
..+++..||||+-- ....+ +.||+|.-|..||.+.+- +.+.|=.|+..+.
T Consensus 418 p~sEd~lCpICyA~--pi~Av-f~PC~H~SC~~CI~qHlm--N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG--PINAV-FAPCSHRSCYGCITQHLM--NCKRCFFCKTTVI 467 (489)
T ss_pred CCcccccCcceecc--cchhh-ccCCCCchHHHHHHHHHh--cCCeeeEecceee
Confidence 34667789999997 67777 569999999999999887 5778999988754
No 56
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00043 Score=52.84 Aligned_cols=30 Identities=30% Similarity=0.721 Sum_probs=26.5
Q ss_pred cCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 62 KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 62 ~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
-.|.|.||..||.+|++ ....||+|..+..
T Consensus 79 G~CNHaFH~hCisrWlk--tr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLK--TRNVCPLDNKEWV 108 (114)
T ss_pred eecchHHHHHHHHHHHh--hcCcCCCcCccee
Confidence 47999999999999998 6888999988754
No 57
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.01 E-value=0.00037 Score=66.84 Aligned_cols=51 Identities=25% Similarity=0.662 Sum_probs=41.0
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc---CCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY---VRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~---~~~~~CP~CR~~~~~ 94 (247)
.....|.+|.+. ..+++ ...|.|.||..||..|+.. ..+.+||.|-.++..
T Consensus 534 k~~~~C~lc~d~--aed~i-~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDP--AEDYI-ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCCh--hhhhH-hhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 345679999998 78887 5699999999999988762 345889999887654
No 58
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00069 Score=63.17 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=39.9
Q ss_pred CcCcccccccCccCC--CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQ--ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~--~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
.+.+||||++.|.+. ..+..+.|||.|-..||.+|+-......||.|.....
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 356899999975333 3444689999999999999996445577999987644
No 59
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.78 E-value=0.00072 Score=60.81 Aligned_cols=46 Identities=24% Similarity=0.559 Sum_probs=38.8
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
-.+.|+.|..+ +.+|+.+..|+|.||..||..-+.. ..+.||.|..
T Consensus 273 i~LkCplc~~L--lrnp~kT~cC~~~fc~eci~~al~d-sDf~CpnC~r 318 (427)
T COG5222 273 ISLKCPLCHCL--LRNPMKTPCCGHTFCDECIGTALLD-SDFKCPNCSR 318 (427)
T ss_pred ccccCcchhhh--hhCcccCccccchHHHHHHhhhhhh-ccccCCCccc
Confidence 34889999999 8899888899999999999885542 6789999965
No 60
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.76 E-value=0.00061 Score=63.26 Aligned_cols=52 Identities=17% Similarity=0.450 Sum_probs=41.5
Q ss_pred CCcCcccccccCccCCC-ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 41 NHGGVCAICLDKTVLQE-TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
..++.|..|-+.|.+.+ ..+-+||.|+||..|+..++.+....+||.||.-.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 35678999999875543 45568999999999999998765678899999543
No 61
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.63 E-value=0.00063 Score=61.16 Aligned_cols=54 Identities=24% Similarity=0.592 Sum_probs=40.5
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc---------------------CCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY---------------------VRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~---------------------~~~~~CP~CR~~~~~ 94 (247)
-....|.||+.-|-.....+..+|.|.||..||.+++.. .....||+||..+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 345679999987534444667899999999999998762 123569999998865
No 62
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0012 Score=57.62 Aligned_cols=54 Identities=26% Similarity=0.699 Sum_probs=40.1
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcccccccccc
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFLHVHRSLD 102 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~~~~~~l~ 102 (247)
..|..|...- ..++..++.|.|+||..|...- ....||+|+.++..+..+..+-
T Consensus 4 VhCn~C~~~~-~~~~f~LTaC~HvfC~~C~k~~----~~~~C~lCkk~ir~i~l~~slp 57 (233)
T KOG4739|consen 4 VHCNKCFRFP-SQDPFFLTACRHVFCEPCLKAS----SPDVCPLCKKSIRIIQLNRSLP 57 (233)
T ss_pred EEeccccccC-CCCceeeeechhhhhhhhcccC----Cccccccccceeeeeecccccc
Confidence 3588887752 4678888999999999997542 2238999999987766665543
No 63
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0004 Score=62.19 Aligned_cols=42 Identities=31% Similarity=0.764 Sum_probs=33.5
Q ss_pred cCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
...|.||++. ..+.+ +++|||. -|..|-.+ ...||+||.-+.
T Consensus 300 ~~LC~ICmDa--P~DCv-fLeCGHmVtCt~CGkr------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDA--PRDCV-FLECGHMVTCTKCGKR------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcC--CcceE-EeecCcEEeehhhccc------cccCchHHHHHH
Confidence 5679999999 88888 6699994 68888654 346999998653
No 64
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.31 E-value=0.0056 Score=50.42 Aligned_cols=52 Identities=21% Similarity=0.583 Sum_probs=39.2
Q ss_pred CCCCcCcccccccCccCCCceEecCCCC-----hhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH-----~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+.+..|-||.+. ... . ..||.- ..|.+|+.+|+..++...|++|..++..
T Consensus 4 ~s~~~~~CRIC~~~--~~~-~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 4 VSLMDKCCWICKDE--YDV-V-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred cCCCCCeeEecCCC--CCC-c-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 34556689999987 332 2 236555 3499999999997778899999999876
No 65
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0016 Score=58.45 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=39.2
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.|-||... +..|| +..|+|.||..|...-+. ....|++|......
T Consensus 241 Pf~c~icr~~--f~~pV-vt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 241 PFKCFICRKY--FYRPV-VTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTHG 287 (313)
T ss_pred Cccccccccc--cccch-hhcCCceeehhhhccccc--cCCcceeccccccc
Confidence 4569999999 88998 559999999999887665 56789999887653
No 66
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0032 Score=58.84 Aligned_cols=52 Identities=25% Similarity=0.510 Sum_probs=39.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc------CCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY------VRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~------~~~~~CP~CR~~ 91 (247)
.+..+.|.||++...-+..+..+||+|.||..|+..++.. .+...||.+..+
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4556789999997545567778899999999999998762 123568876654
No 67
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0056 Score=53.80 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=53.8
Q ss_pred CcCCccccccccccccccc-----cCCCCCcCcccccccCccCCC-ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 18 DNLSISDQGEMQSKADNRE-----MGFGNHGGVCAICLDKTVLQE-TALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 18 ~~~~~~~~~~~~~~~e~~~-----~~~~~~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
..++++++-...+...+.+ +...+..+.||||.+.+.... .+.+.+|||+||..|...++. ....||+|-.+
T Consensus 191 kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir--~D~v~pv~d~p 268 (303)
T KOG3039|consen 191 KPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR--KDMVDPVTDKP 268 (303)
T ss_pred CccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc--ccccccCCCCc
Confidence 3456677766666554432 233457889999999843222 234679999999999999987 67889999988
Q ss_pred Ccc
Q 025884 92 FEF 94 (247)
Q Consensus 92 ~~~ 94 (247)
+..
T Consensus 269 lkd 271 (303)
T KOG3039|consen 269 LKD 271 (303)
T ss_pred Ccc
Confidence 765
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.95 E-value=0.0069 Score=40.18 Aligned_cols=46 Identities=20% Similarity=0.590 Sum_probs=22.7
Q ss_pred ccccccCccCCCc-eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 46 CAICLDKTVLQET-ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 46 C~ICl~~~~~~~p-v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
||+|.+.+...+. ..--+|++.+|..|+...... ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 7889887533332 222378999999999887763 477899999874
No 69
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.87 E-value=0.0037 Score=42.50 Aligned_cols=45 Identities=33% Similarity=0.670 Sum_probs=32.8
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...|-.|... ....+ +++|+|..|..|+.-+ .-+.||.|..+|..
T Consensus 7 ~~~~~~~~~~--~~~~~-~~pCgH~I~~~~f~~~----rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFV--GTKGT-VLPCGHLICDNCFPGE----RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccc--ccccc-cccccceeeccccChh----hccCCCCCCCcccC
Confidence 3456667665 44444 6799999999997654 34669999998864
No 70
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.83 E-value=0.01 Score=52.81 Aligned_cols=71 Identities=14% Similarity=0.294 Sum_probs=50.1
Q ss_pred Cccccccccccccccc-------cCCCCCcCcccccccCccCC-CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 21 SISDQGEMQSKADNRE-------MGFGNHGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 21 ~~~~~~~~~~~~e~~~-------~~~~~~~~~C~ICl~~~~~~-~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
+++++.+.++...... .......+.|||....|... .-+.+.+|||+|+..+|...- ....||+|-.+|
T Consensus 84 ~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f 160 (260)
T PF04641_consen 84 SLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPF 160 (260)
T ss_pred CccceeeEEeEecCccccccccccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCcc
Confidence 4677766666543211 22356778999999885322 345567999999999998863 356799999998
Q ss_pred cc
Q 025884 93 EF 94 (247)
Q Consensus 93 ~~ 94 (247)
..
T Consensus 161 ~~ 162 (260)
T PF04641_consen 161 TE 162 (260)
T ss_pred cc
Confidence 75
No 71
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.73 E-value=0.013 Score=48.19 Aligned_cols=50 Identities=22% Similarity=0.665 Sum_probs=34.3
Q ss_pred cCcccccccCccCCCceEec------C-----CCChh-hHHHHHHHHhc-----------------------------CC
Q 025884 43 GGVCAICLDKTVLQETALVK------G-----CEHAY-CATCILRWASY-----------------------------VR 81 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~------~-----CgH~F-C~~Ci~~w~~~-----------------------------~~ 81 (247)
+.+||||++. ..+.|.++ . |+-.| |..||.++-+. ..
T Consensus 2 d~~CpICme~--PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T PF07800_consen 2 DVTCPICMEH--PHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP 79 (162)
T ss_pred CccCceeccC--CCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence 4579999999 88888553 2 33322 56788886651 01
Q ss_pred CCCCCCCCcCCcc
Q 025884 82 NPTCPQCKHPFEF 94 (247)
Q Consensus 82 ~~~CP~CR~~~~~ 94 (247)
...||+||..+..
T Consensus 80 ~L~CPLCRG~V~G 92 (162)
T PF07800_consen 80 ELACPLCRGEVKG 92 (162)
T ss_pred cccCccccCceec
Confidence 3569999999876
No 72
>PHA02862 5L protein; Provisional
Probab=95.59 E-value=0.012 Score=47.77 Aligned_cols=47 Identities=26% Similarity=0.674 Sum_probs=36.8
Q ss_pred CcccccccCccCCCceEecCCCC-----hhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH-----~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..|-||++. ..+.+ -||.- .-|..|+.+|+...+...||+|+.++..
T Consensus 3 diCWIC~~~--~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDV--CDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCc--CCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 469999997 44443 36644 5699999999987778899999998765
No 73
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0082 Score=55.30 Aligned_cols=48 Identities=27% Similarity=0.714 Sum_probs=34.4
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.......|.||++. ..+.+ .+||||.-| |..-.. ....||+||..+..
T Consensus 301 ~~~~p~lcVVcl~e--~~~~~-fvpcGh~cc--ct~cs~---~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDE--PKSAV-FVPCGHVCC--CTLCSK---HLPQCPVCRQRIRL 348 (355)
T ss_pred ccCCCCceEEecCC--cccee-eecCCcEEE--chHHHh---hCCCCchhHHHHHH
Confidence 34455679999998 66666 569999866 654432 35569999997653
No 74
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.20 E-value=0.0076 Score=45.66 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHH
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCIL 74 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~ 74 (247)
..+...|++|...|.. .+..+.||||.||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3445679999998533 455578999999999975
No 75
>PHA03096 p28-like protein; Provisional
Probab=95.14 E-value=0.013 Score=53.05 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=32.0
Q ss_pred CcccccccCccCCCc-----eEecCCCChhhHHHHHHHHhcC-CCCCCCCCCcC
Q 025884 44 GVCAICLDKTVLQET-----ALVKGCEHAYCATCILRWASYV-RNPTCPQCKHP 91 (247)
Q Consensus 44 ~~C~ICl~~~~~~~p-----v~~~~CgH~FC~~Ci~~w~~~~-~~~~CP~CR~~ 91 (247)
-.|.||++.+....+ ..+..|.|.||..|+..|.... ...+||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 569999997422211 1245899999999999998732 23445555543
No 76
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.06 E-value=0.016 Score=58.53 Aligned_cols=53 Identities=26% Similarity=0.627 Sum_probs=40.8
Q ss_pred CCCCcCcccccccCccCCCceEe-cCCCChhhHHHHHHHHhc-----CCCCCCCCCCcC
Q 025884 39 FGNHGGVCAICLDKTVLQETALV-KGCEHAYCATCILRWASY-----VRNPTCPQCKHP 91 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~-~~CgH~FC~~Ci~~w~~~-----~~~~~CP~CR~~ 91 (247)
..+..+.|.||++.|+...++-. ..|-|+||..||..|... .....||.|...
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 35567789999999777666532 469999999999999973 234679999843
No 77
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.04 E-value=0.022 Score=45.66 Aligned_cols=64 Identities=25% Similarity=0.512 Sum_probs=45.3
Q ss_pred cccccccccccCCCCCcCcccccccCccCCCceEec---CCCChhhHHHHHH-HHhcCCCCCCCCCCcCCcc
Q 025884 27 EMQSKADNREMGFGNHGGVCAICLDKTVLQETALVK---GCEHAYCATCILR-WASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 27 ~~~~~~e~~~~~~~~~~~~C~ICl~~~~~~~pv~~~---~CgH~FC~~Ci~~-w~~~~~~~~CP~CR~~~~~ 94 (247)
++..+..++..+. .-.+|.||.+. ..+..++. -||-..|..|... |-...-...||+|+..|..
T Consensus 66 n~r~qvmnvF~d~--~lYeCnIC~et--S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 66 NRRLQVMNVFLDP--KLYECNICKET--SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred HHHHHHheeecCC--CceeccCcccc--cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3444444444333 56789999998 66655443 4999999999988 5443356789999999875
No 78
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.018 Score=51.83 Aligned_cols=47 Identities=23% Similarity=0.564 Sum_probs=36.5
Q ss_pred CcccccccCccCC----CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 44 GVCAICLDKTVLQ----ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 44 ~~C~ICl~~~~~~----~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
+.|-||.+.|... .|. ++.|||+||..|+...+.+ ....||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~-~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPR-VLKCGHTICQNCASKLLGN-SRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCc-ccccCceehHhHHHHHhcC-ceeeccCCCCcc
Confidence 4699998876332 343 5689999999999887764 567789999985
No 79
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.86 E-value=0.015 Score=58.40 Aligned_cols=47 Identities=26% Similarity=0.698 Sum_probs=37.5
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..|.||++. ..++ +.+|+|.||..|+...+.......||.||..+..
T Consensus 455 ~~c~ic~~~---~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCDL---DSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred ccccccccc---ccce-eecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 689999994 3444 6699999999999997764445579999998764
No 80
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.77 E-value=0.013 Score=38.56 Aligned_cols=42 Identities=29% Similarity=0.694 Sum_probs=26.3
Q ss_pred ccccccCccCCCceEecCCCC-----hhhHHHHHHHHhcCCCCCCCCC
Q 025884 46 CAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQC 88 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH-----~FC~~Ci~~w~~~~~~~~CP~C 88 (247)
|-||++.-....++ +.||.- ..|..||.+|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67898862122233 567765 3589999999986567789987
No 81
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.62 E-value=0.032 Score=51.38 Aligned_cols=53 Identities=25% Similarity=0.534 Sum_probs=39.2
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..++...|-||...+ . -+.++||+|..|.-|-.+.-.--..+.||+||.....
T Consensus 57 tDEen~~C~ICA~~~--T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 57 TDEENMNCQICAGST--T-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccccceeEEecCCc--e-EEEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence 355667899999973 2 2346799999999998874321256789999998765
No 82
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.58 E-value=0.027 Score=53.31 Aligned_cols=35 Identities=20% Similarity=0.491 Sum_probs=29.7
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~ 78 (247)
++++.|+||... +.+|+ +++|+|+.|..|....+.
T Consensus 2 eeelkc~vc~~f--~~epi-il~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSF--YREPI-ILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhh--ccCce-EeecccHHHHHHHHhhcc
Confidence 356789999999 88998 779999999999876554
No 83
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.033 Score=50.84 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=39.4
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
...+...||||+.. ..+|..+.--|-.||..|+..++. ....||+-..|.
T Consensus 296 l~~~~~~CpvClk~--r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKK--RQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhc--cCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcc
Confidence 34455679999998 677765656799999999999998 578899876664
No 84
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.16 E-value=0.036 Score=36.98 Aligned_cols=45 Identities=20% Similarity=0.503 Sum_probs=24.1
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHh---cCCCCCCCCCCcC
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWAS---YVRNPTCPQCKHP 91 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~---~~~~~~CP~CR~~ 91 (247)
+.|||.... +..|+....|.|.-|.+- ..|+. ......||+|..+
T Consensus 3 L~CPls~~~--i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQR--IRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB---SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCE--EEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 679999998 788999999999988653 33443 2355789999764
No 85
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.037 Score=51.68 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=37.6
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcC-CCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~-~~~~CP~CR~~ 91 (247)
.=..|.|||=.+.=...+|...+.|||+.|.+-|.+...++ ..+.||.|-..
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 44568899966642244555578999999999999988742 13789999543
No 86
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.06 E-value=0.055 Score=34.97 Aligned_cols=41 Identities=22% Similarity=0.690 Sum_probs=22.0
Q ss_pred ccccccCccCCCceEe--cCCCChhhHHHHHHHHhcCCCCCCCCC
Q 025884 46 CAICLDKTVLQETALV--KGCEHAYCATCILRWASYVRNPTCPQC 88 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~--~~CgH~FC~~Ci~~w~~~~~~~~CP~C 88 (247)
|.+|.++ ...-+.- ..|+-.+|..|+..++.......||.|
T Consensus 1 C~~C~~i--v~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEI--VTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB---SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred Ccccchh--HeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6788887 4333322 258889999999999885444579987
No 87
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.95 E-value=0.03 Score=45.01 Aligned_cols=36 Identities=25% Similarity=0.577 Sum_probs=26.1
Q ss_pred cCcccccccCccCCCceEecCCC------ChhhHHHHHHHHh
Q 025884 43 GGVCAICLDKTVLQETALVKGCE------HAYCATCILRWAS 78 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~Cg------H~FC~~Ci~~w~~ 78 (247)
...|.||++.|....-+..++|+ |.||.+|+.+|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 45699999986442344445565 7899999999954
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.93 E-value=0.043 Score=50.00 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=37.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.-+-+.||||.+. +..|+..-+=||.-|..|-.. -...||.||.++..
T Consensus 45 ~~~lleCPvC~~~--l~~Pi~QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNP--LSPPIFQCDNGHLACSSCRTK-----VSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhcc--CcccceecCCCcEehhhhhhh-----hcccCCcccccccc
Confidence 4456789999999 666764445589999999653 35679999999875
No 89
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.055 Score=48.65 Aligned_cols=49 Identities=22% Similarity=0.573 Sum_probs=35.1
Q ss_pred cccccccCc--cCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 45 VCAICLDKT--VLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 45 ~C~ICl~~~--~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.||+|.... ...-.+.+-+|+|..|-+|+.+.+.. +...||.|-..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhhh
Confidence 499998742 11112223499999999999998874 67789999877643
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=0.036 Score=56.19 Aligned_cols=41 Identities=24% Similarity=0.633 Sum_probs=35.0
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
..|..|-.. +.-|+....|||.||..|+.. ....||.|+..
T Consensus 841 skCs~C~~~--LdlP~VhF~CgHsyHqhC~e~-----~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGT--LDLPFVHFLCGHSYHQHCLED-----KEDKCPKCLPE 881 (933)
T ss_pred eeecccCCc--cccceeeeecccHHHHHhhcc-----CcccCCccchh
Confidence 479999998 777887889999999999972 57889999874
No 91
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.72 E-value=0.053 Score=49.84 Aligned_cols=52 Identities=17% Similarity=0.543 Sum_probs=37.0
Q ss_pred CcCcccccccCccCCCce-EecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv-~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
++..||+|++.+...+.- +--+||-..|..|+...-.. -+..||.||.....
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhccc
Confidence 334599999986555432 23478889999998776553 35679999987654
No 92
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.049 Score=45.80 Aligned_cols=55 Identities=20% Similarity=0.525 Sum_probs=35.7
Q ss_pred CCCcCcccccccC-ccCCCceE---ecCCCChhhHHHHHHHHhc----CCC-----CCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDK-TVLQETAL---VKGCEHAYCATCILRWASY----VRN-----PTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~-~~~~~pv~---~~~CgH~FC~~Ci~~w~~~----~~~-----~~CP~CR~~~~~ 94 (247)
..+-.-|.||+.+ +.-..|-+ ...||..||.-|+..|+.. .++ ..||.|..|+..
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4445568888864 11111111 2589999999999999972 111 249999988753
No 93
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=0.079 Score=46.13 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=38.4
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhc------CCCCCCCCCCcCCc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY------VRNPTCPQCKHPFE 93 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~------~~~~~CP~CR~~~~ 93 (247)
...|.+|...+-..+.+ .+-|-|.||-.|+..|..+ .....||.|..++-
T Consensus 50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 34599999875455665 6699999999999999863 23456999988764
No 94
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.06 E-value=0.14 Score=47.78 Aligned_cols=31 Identities=26% Similarity=0.865 Sum_probs=23.0
Q ss_pred CCChhhHHHHHHHHhc-----------CCCCCCCCCCcCCcc
Q 025884 64 CEHAYCATCILRWASY-----------VRNPTCPQCKHPFEF 94 (247)
Q Consensus 64 CgH~FC~~Ci~~w~~~-----------~~~~~CP~CR~~~~~ 94 (247)
|....|.+|+.+|+.. .+...||+||+.|..
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 3344589999999973 234569999999864
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.056 Score=49.10 Aligned_cols=43 Identities=21% Similarity=0.569 Sum_probs=29.1
Q ss_pred ccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
|--|--.| ..-..+++|.|.||.+|-.. . ..+.||.|-..+..
T Consensus 93 Cd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~--~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 93 CDRCDFPI--AIYGRMIPCKHVFCLECARS--D--SDKICPLCDDRVQR 135 (389)
T ss_pred ecccCCcc--eeeecccccchhhhhhhhhc--C--ccccCcCcccHHHH
Confidence 55565442 22234579999999999643 1 46789999887654
No 96
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=92.66 E-value=0.068 Score=57.16 Aligned_cols=69 Identities=22% Similarity=0.501 Sum_probs=43.5
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhc---CC-----CCCCCCCCcCCccccccccccCCchhhHhH
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY---VR-----NPTCPQCKHPFEFLHVHRSLDGSDYMFEES 111 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~---~~-----~~~CP~CR~~~~~~~~~~~l~~~d~~~ees 111 (247)
+..|-||+..--...|...+.|+|.||..|..+.+.+ +. -..||+|..++..+-....++.+....++.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLldPiKel~edV 3562 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDPIKELYEDV 3562 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHHHHHHHHHHH
Confidence 3469999874113456667899999999999775542 11 146999999987643333333333334443
No 97
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.44 E-value=0.096 Score=47.10 Aligned_cols=52 Identities=25% Similarity=0.377 Sum_probs=38.2
Q ss_pred cCCCCCcCcccccccCc-cCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 37 MGFGNHGGVCAICLDKT-VLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 37 ~~~~~~~~~C~ICl~~~-~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
.........||||.+.+ .....+..++|||..+..|+..... ...+||+|..
T Consensus 152 c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~--~~y~CP~C~~ 204 (276)
T KOG1940|consen 152 CVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC--EGYTCPICSK 204 (276)
T ss_pred hhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhc--cCCCCCcccc
Confidence 33444455599999963 3334444689999999999988776 3499999988
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.03 E-value=0.026 Score=59.40 Aligned_cols=50 Identities=34% Similarity=0.680 Sum_probs=39.5
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
......|.||+++ ...--.+..|||.+|..|+..|+. ....||.|.....
T Consensus 1150 ~~~~~~c~ic~di--l~~~~~I~~cgh~~c~~c~~~~l~--~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDI--LRNQGGIAGCGHEPCCRCDELWLY--ASSRCPICKSIKG 1199 (1394)
T ss_pred hhcccchHHHHHH--HHhcCCeeeechhHhhhHHHHHHH--HhccCcchhhhhh
Confidence 4455689999998 553333679999999999999998 5788999986543
No 99
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=0.088 Score=49.60 Aligned_cols=53 Identities=21% Similarity=0.548 Sum_probs=34.8
Q ss_pred CcCcccccccCccCC-CceEecCCCChhhHHHHHHHHhc----CCCCCCCC--CCcCCcc
Q 025884 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASY----VRNPTCPQ--CKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~~~CgH~FC~~Ci~~w~~~----~~~~~CP~--CR~~~~~ 94 (247)
...+|.||....... ....+..|+|.||.+|+.+++.. +....||. |...+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~ 204 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTL 204 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCH
Confidence 466899999431122 22224689999999999998873 23456874 5555544
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.76 E-value=0.092 Score=53.57 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=30.9
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~ 78 (247)
......|.+|...| +..|..+.||||.||..||.+-..
T Consensus 814 ~ep~d~C~~C~~~l-l~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPL-LIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchh-hcCcceeeeccchHHHHHHHHHHH
Confidence 44556799999975 667877899999999999988554
No 101
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.1 Score=45.12 Aligned_cols=39 Identities=31% Similarity=0.757 Sum_probs=29.6
Q ss_pred ccccccCccCCCceEecCCCC-hhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 46 CAICLDKTVLQETALVKGCEH-AYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH-~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
|-+|... . ..|.++||.| .+|..|=. ....||+|+.+..
T Consensus 161 Cr~C~~~--~-~~VlllPCrHl~lC~~C~~------~~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER--E-ATVLLLPCRHLCLCGICDE------SLRICPICRSPKT 200 (207)
T ss_pred ceecCcC--C-ceEEeecccceEecccccc------cCccCCCCcChhh
Confidence 9999987 4 3466889999 48888832 2566999998754
No 102
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.69 E-value=0.1 Score=45.86 Aligned_cols=51 Identities=25% Similarity=0.651 Sum_probs=35.2
Q ss_pred CcCcccccccCccC-CC-ceEecC-CCChhhHHHHHHHHhcCCCCCCC--CCCcCCc
Q 025884 42 HGGVCAICLDKTVL-QE-TALVKG-CEHAYCATCILRWASYVRNPTCP--QCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~-~~-pv~~~~-CgH~FC~~Ci~~w~~~~~~~~CP--~CR~~~~ 93 (247)
.+-.||||....-+ ++ ...+-| |-|.+|-+|+.+.++. +...|| -|..-+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHH
Confidence 34479999985212 22 222334 9999999999998875 567899 6866544
No 103
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=0.18 Score=45.52 Aligned_cols=31 Identities=23% Similarity=0.720 Sum_probs=23.9
Q ss_pred CCChhhHHHHHHHHhc-----------CCCCCCCCCCcCCcc
Q 025884 64 CEHAYCATCILRWASY-----------VRNPTCPQCKHPFEF 94 (247)
Q Consensus 64 CgH~FC~~Ci~~w~~~-----------~~~~~CP~CR~~~~~ 94 (247)
|....|.+||.+|+.. .++.+||+||+.|..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 4556788999999862 345689999999865
No 104
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.13 Score=50.96 Aligned_cols=42 Identities=33% Similarity=0.707 Sum_probs=30.0
Q ss_pred cCcccccccCccC--CCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 43 GGVCAICLDKTVL--QETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 43 ~~~C~ICl~~~~~--~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
.+.|+||+..|-. ..|+ .+.|||+.|..|+.... +.+|| |..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pv-sl~cghtic~~c~~~ly----n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPV-SLQCGHTICGHCVQLLY----NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcc-cccccchHHHHHHHhHh----hccCC-CCc
Confidence 4579999776412 3567 56999999999998764 45688 433
No 105
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.05 E-value=0.08 Score=52.89 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=37.7
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcC-CCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~-~~~~CP~CR~~~~~ 94 (247)
.++|+||+.. ..+|+ ++.|.|.||..|+...+... ....||+|+..+..
T Consensus 21 ~lEc~ic~~~--~~~p~-~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEH--VKEPS-LLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEE--eeccc-hhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 4569999998 67776 66999999999998854422 36779999965543
No 106
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.88 E-value=0.18 Score=33.31 Aligned_cols=43 Identities=28% Similarity=0.698 Sum_probs=23.9
Q ss_pred cccccccCccCCCceEecCCC-ChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 45 VCAICLDKTVLQETALVKGCE-HAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~Cg-H~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.|.-|.-. +.. ++.|. |..|..|+...+. .+..||+|..+++.
T Consensus 4 nCKsCWf~----~k~-Li~C~dHYLCl~CLt~ml~--~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFA----NKG-LIKCSDHYLCLNCLTLMLS--RSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S------SS-EEE-SS-EEEHHHHHHT-S--SSSEETTTTEE---
T ss_pred cChhhhhc----CCC-eeeecchhHHHHHHHHHhc--cccCCCcccCcCcc
Confidence 35556544 333 33564 6779999999887 67889999998753
No 107
>PLN02436 cellulose synthase A
Probab=85.44 E-value=0.7 Score=48.56 Aligned_cols=51 Identities=31% Similarity=0.703 Sum_probs=33.6
Q ss_pred CcCcccccccCccCCC--ceEe--cCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQE--TALV--KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~--pv~~--~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
....|.||-+.+.... -+++ -.|+--.|..|+.- -...++..||.|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchh
Confidence 4458999999853321 1222 24666689999943 33346789999999865
No 108
>PLN02189 cellulose synthase
Probab=85.31 E-value=0.85 Score=47.84 Aligned_cols=51 Identities=31% Similarity=0.685 Sum_probs=33.8
Q ss_pred CcCcccccccCccCCC--ceEe--cCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQE--TALV--KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~--pv~~--~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
....|.||-+.+.... -+++ -.|+--.|..|+.- -...++..||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchh
Confidence 3457999999854321 1212 24666689999943 33346789999999865
No 109
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=84.58 E-value=0.81 Score=48.13 Aligned_cols=51 Identities=31% Similarity=0.711 Sum_probs=33.7
Q ss_pred CcCcccccccCccCCCc--eEe--cCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQET--ALV--KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~p--v~~--~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
....|.||-+.+.+... +++ -.|+--.|..|. .+=...++..||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 34589999998543321 212 256666899998 3333346789999999754
No 110
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.36 E-value=1.2 Score=45.54 Aligned_cols=54 Identities=17% Similarity=0.608 Sum_probs=40.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCCh-----hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHA-----YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~-----FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+.-+|.||...=...+|.. -||... .|.+|+..|+..+....|-+|..++..
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 344568999987411445663 377653 599999999997678889999999876
No 111
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.18 E-value=0.63 Score=42.56 Aligned_cols=51 Identities=12% Similarity=0.228 Sum_probs=36.3
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcC-CCCCCCCCCc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKH 90 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~-~~~~CP~CR~ 90 (247)
.-.-++||+=.+.-...+|..++.|||..-..-+.+..+++ ..+.||.|-.
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34467899865542234555588999999999999887743 3467999954
No 112
>PLN02400 cellulose synthase
Probab=83.84 E-value=0.93 Score=47.75 Aligned_cols=51 Identities=31% Similarity=0.756 Sum_probs=33.5
Q ss_pred CcCcccccccCccCCCc--eEe--cCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQET--ALV--KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~p--v~~--~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
....|.||-+.+..... +++ -.|+--.|..|.. +=...++..||.|+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh-eecccCCccCcccCCccc
Confidence 44589999998543321 212 3566668999983 322336788999999865
No 113
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=0.85 Score=43.72 Aligned_cols=55 Identities=22% Similarity=0.538 Sum_probs=37.6
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc----CCC--CCCC--CCCcCCccccc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY----VRN--PTCP--QCKHPFEFLHV 97 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~----~~~--~~CP--~CR~~~~~~~~ 97 (247)
.....|.||.+. .......+.|+|.||..|+..++.. ... .+|| -|...+....+
T Consensus 68 ~~~~~c~ic~~~--~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 68 KGDVQCGICVES--YDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred CccccCCcccCC--CcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence 344689999998 4333447799999999999998873 111 4566 47666655333
No 114
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.39 E-value=1.2 Score=39.40 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS 78 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~ 78 (247)
...+...|++|+.. ..+|| +.+=||.||.+||..++-
T Consensus 39 siK~FdcCsLtLqP--c~dPv-it~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQP--CRDPV-ITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeeccc--ccCCc-cCCCCeeeeHHHHHHHHH
Confidence 34445568999999 89999 559999999999999765
No 115
>PLN02195 cellulose synthase A
Probab=80.44 E-value=5.7 Score=41.64 Aligned_cols=49 Identities=20% Similarity=0.581 Sum_probs=32.8
Q ss_pred CcCcccccccCccCC---Cce-EecCCCChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 42 HGGVCAICLDKTVLQ---ETA-LVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~---~pv-~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
....|.||-+.+... ++. -.-.|+--.|..|. .+=...++..||.|+..
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~ 57 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGP 57 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCc
Confidence 345799999975332 221 12367777999998 44333467889999887
No 116
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=78.01 E-value=1.8 Score=45.51 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=33.5
Q ss_pred CcCcccccccCccCCC--ceEe--cCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQE--TALV--KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~--pv~~--~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
....|.||-+.+.... -+++ -.|+--.|..|+ .+=...++..||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 4557999999753321 1212 246666999999 4433346789999998754
No 117
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.80 E-value=1.8 Score=38.53 Aligned_cols=53 Identities=23% Similarity=0.605 Sum_probs=35.7
Q ss_pred CCCcCcccccccCccCCCce---EecCC-----CChhhHHHHHHHHhcC------CCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETA---LVKGC-----EHAYCATCILRWASYV------RNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv---~~~~C-----gH~FC~~Ci~~w~~~~------~~~~CP~CR~~~~~ 94 (247)
...+-.|-||+.. ..+.. -+-|| .|..|..||.+|+..+ +...||.|+...-.
T Consensus 17 ~e~eR~CWiCF~T--deDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 17 QELERCCWICFAT--DEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cccceeEEEEecc--CcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3345579999987 44432 12355 4678999999999732 22469999987544
No 118
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=76.53 E-value=2.8 Score=30.57 Aligned_cols=51 Identities=33% Similarity=0.734 Sum_probs=20.8
Q ss_pred CcCcccccccCccCCC--ceEe--cCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQE--TALV--KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~--pv~~--~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
....|.||-+.+.+.. .+++ -.|+--.|..|+.-=.+ .+...||.|+.++.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErk-eg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERK-EGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHH-TS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhh-cCcccccccCCCcc
Confidence 4557999998753322 1222 36777789999865444 36788999998754
No 119
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.97 E-value=1.6 Score=44.46 Aligned_cols=53 Identities=8% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCCcCcccccccCccCCC---ceEec---CCCChhhHHHHHHHHhc----CCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQE---TALVK---GCEHAYCATCILRWASY----VRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~---pv~~~---~CgH~FC~~Ci~~w~~~----~~~~~CP~CR~~~~~ 94 (247)
.-...+|.||.-- +.. ..-+. .|+|.||..||..|... .....|++|..-|..
T Consensus 93 ~a~s~Ss~~C~~E--~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 93 TAESDTSPVCEKE--HSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccccchhhee--cCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 3344567777655 222 11223 49999999999999862 223457888777665
No 120
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=74.23 E-value=1 Score=33.11 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=0.0
Q ss_pred CccchhhhhhhcCCCCceeccCcCCCCCc
Q 025884 144 DEEDDLDEVYFRSSSSLRIGNRRWGDNGY 172 (247)
Q Consensus 144 deddd~ee~y~~~~~~~~ignrr~g~~g~ 172 (247)
|++|+++|.++.....-+ -.+++++.+.
T Consensus 43 D~dDdeeee~m~rK~k~r-~rkKrrwlwL 70 (81)
T PF14812_consen 43 DDDDDEEEEPMPRKGKKR-PRKKRRWLWL 70 (81)
T ss_dssp -----------------------------
T ss_pred cccchhhccccccccccC-ccccchhHHH
Confidence 333445666665543223 3344444443
No 121
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.06 E-value=1.9 Score=43.85 Aligned_cols=41 Identities=24% Similarity=0.576 Sum_probs=27.4
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCC
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQ 87 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~ 87 (247)
+.|.||.-.+.-. ..+...|+|..|.+|...|+.+ ...||.
T Consensus 1029 ~~C~~C~l~V~gs-s~~Cg~C~Hv~H~sc~~eWf~~--gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGS-SNFCGTCGHVGHTSCMMEWFRT--GDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeecc-chhhccccccccHHHHHHHHhc--CCcCCC
Confidence 3466665442111 2224589999999999999995 457885
No 122
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.92 E-value=1.5 Score=39.65 Aligned_cols=38 Identities=24% Similarity=0.601 Sum_probs=28.9
Q ss_pred CCCCcCcccccccCccCCCceEecCC----CChhhHHHHHHHHhc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGC----EHAYCATCILRWASY 79 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~C----gH~FC~~Ci~~w~~~ 79 (247)
..+.-+.|.+|.+. +.+..++ .| .|-||+.|-...++.
T Consensus 264 A~~apLcCTLC~ER--LEDTHFV-QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 264 APSAPLCCTLCHER--LEDTHFV-QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CCCCceeehhhhhh--hccCcee-ecCCCcccceecccCHHHHHh
Confidence 34556889999999 6666533 55 799999999887763
No 123
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=72.52 E-value=2 Score=42.54 Aligned_cols=45 Identities=24% Similarity=0.737 Sum_probs=29.7
Q ss_pred CCCcCcccccccC---ccC-CC-ceEecCCCChhhHHHHHHHHhcCCCCCCCCCC
Q 025884 40 GNHGGVCAICLDK---TVL-QE-TALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (247)
Q Consensus 40 ~~~~~~C~ICl~~---~~~-~~-pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR 89 (247)
...++.|.+|... |++ .+ ...-..|++.||..|+.+ ....||.|-
T Consensus 508 ~~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r-----~s~~CPrC~ 557 (580)
T KOG1829|consen 508 TGKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR-----KSPCCPRCE 557 (580)
T ss_pred ccCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc-----cCCCCCchH
Confidence 5567788888552 233 11 122368999999999765 344599993
No 124
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=72.20 E-value=6.1 Score=30.40 Aligned_cols=48 Identities=23% Similarity=0.609 Sum_probs=30.5
Q ss_pred CcCcccccccCccCCCce-Ee------cCC---CChhhHHHHHHHHhc-------CCCCCCCCCCcC
Q 025884 42 HGGVCAICLDKTVLQETA-LV------KGC---EHAYCATCILRWASY-------VRNPTCPQCKHP 91 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv-~~------~~C---gH~FC~~Ci~~w~~~-------~~~~~CP~CR~~ 91 (247)
...+|..|... ..+.. .- ..| .-.||..||..++.. .....||.||..
T Consensus 6 ~g~~CHqCrqK--t~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 6 NGKTCHQCRQK--TLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCCchhhcCC--CCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 34567778775 22222 11 345 667999999886641 245679999984
No 125
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=72.10 E-value=2 Score=37.15 Aligned_cols=47 Identities=21% Similarity=0.533 Sum_probs=35.4
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
--.|.+|..+ +..-+..-.|+-.|+..|+..++. ....||.|..-++
T Consensus 181 lk~Cn~Ch~L--vIqg~rCg~c~i~~h~~c~qty~q--~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCL--VIQGIRCGSCNIQYHRGCIQTYLQ--RRDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHH--hheeeccCcccchhhhHHHHHHhc--ccCcCCchhcccC
Confidence 3479999997 544443457777799999999997 5788999965443
No 126
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.65 E-value=3 Score=38.33 Aligned_cols=50 Identities=26% Similarity=0.634 Sum_probs=36.4
Q ss_pred cCcccccccCccCCC-ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQE-TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...|+||.+.....+ ...-.+|++..|..|+..... +...||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~--~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD--GDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccc--cCCCCCccCCcccc
Confidence 357999999632222 233358999999999988776 67889999976543
No 127
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=71.61 E-value=4.6 Score=36.11 Aligned_cols=53 Identities=26% Similarity=0.560 Sum_probs=37.9
Q ss_pred CCcCcccccccCccCCC--ceEecCCCC-----hhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQE--TALVKGCEH-----AYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~--pv~~~~CgH-----~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.....|-||........ +. ..||.- ..|..|+..|+..++...|..|...+..
T Consensus 76 ~~~~~cRIc~~~~~~~~~~~l-~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 76 SSGPICRICHEEDEESNGLLL-ISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCCcEEEEeccccccccccc-ccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 33578999999631111 23 457653 3589999999987788999999887654
No 128
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=69.79 E-value=2.3 Score=24.39 Aligned_cols=8 Identities=25% Similarity=0.713 Sum_probs=5.1
Q ss_pred cccccccC
Q 025884 45 VCAICLDK 52 (247)
Q Consensus 45 ~C~ICl~~ 52 (247)
.||-|...
T Consensus 2 ~CP~C~~~ 9 (26)
T PF10571_consen 2 TCPECGAE 9 (26)
T ss_pred cCCCCcCC
Confidence 36666666
No 129
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=68.54 E-value=3.5 Score=27.47 Aligned_cols=41 Identities=22% Similarity=0.457 Sum_probs=24.6
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
+.+.||.|... +.... ++.-|...-........||+|...+
T Consensus 1 ~~f~CP~C~~~--~~~~~--------L~~H~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 1 DSFTCPYCGKG--FSESS--------LVEHCEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CCcCCCCCCCc--cCHHH--------HHHHHHhHCcCCCCCccCCCchhhh
Confidence 35789999986 44322 3344544433333457799997643
No 131
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=67.85 E-value=3.2 Score=29.31 Aligned_cols=12 Identities=25% Similarity=1.212 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHh
Q 025884 67 AYCATCILRWAS 78 (247)
Q Consensus 67 ~FC~~Ci~~w~~ 78 (247)
.||+.||..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 132
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.59 E-value=3.1 Score=39.24 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=29.2
Q ss_pred CcCcccccccCccCC---CceEecCCCChhhHHHHHHHHhcCCCCCCCC
Q 025884 42 HGGVCAICLDKTVLQ---ETALVKGCEHAYCATCILRWASYVRNPTCPQ 87 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~---~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~ 87 (247)
....||+|.-.|... ..++- .|+|-||..|...|.. .+..|..
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~C-rC~~~fcy~C~~~~~~--~~~~~~~ 350 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTC-RCGHQFCYMCGGDWKT--HNGECYE 350 (384)
T ss_pred hcCcCcccceeeeecCCcceEEe-eccccchhhcCcchhh--CCccccC
Confidence 455699998875332 23434 4999999999999986 4444543
No 133
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=65.38 E-value=0.36 Score=34.54 Aligned_cols=42 Identities=29% Similarity=0.812 Sum_probs=23.2
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCccc
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFL 95 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~ 95 (247)
..||.|...+ . ... +|.+|..|-..+. ....||.|..++..+
T Consensus 2 ~~CP~C~~~L--~----~~~-~~~~C~~C~~~~~---~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQEL--E----WQG-GHYHCEACQKDYK---KEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBE--E----EET-TEEEETTT--EEE---EEEE-TTT-SB-EEE
T ss_pred CcCCCCCCcc--E----EeC-CEEECccccccce---ecccCCCcccHHHHH
Confidence 4799999873 2 112 7778888876543 356799999998753
No 134
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.40 E-value=2 Score=39.09 Aligned_cols=52 Identities=27% Similarity=0.676 Sum_probs=40.9
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.-....+|-||... +.-|...-.|.|.||..|...|.. ....||.|+.....
T Consensus 101 ~~~~~~~~~~~~g~--l~vpt~~qg~w~qf~~~~p~~~~~--~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 101 FQQDHDICYICYGK--LTVPTRIQGCWHQFCYVCPKSNFA--MGNDCPDCRGKISP 152 (324)
T ss_pred ccCCccceeeeeee--EEecccccCceeeeeecCCchhhh--hhhccchhhcCcCc
Confidence 34556679999998 666666678999999999999987 46679988886654
No 135
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=63.11 E-value=0.94 Score=40.85 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCCCcCcccccccCccCCCceEec----CCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 39 FGNHGGVCAICLDKTVLQETALVK----GCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~----~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
..+....||||-.. ..-.+... .-.|.+|.-|-..|-- ....||.|-..-
T Consensus 168 ~~w~~g~CPvCGs~--P~~s~l~~~~~~G~R~L~Cs~C~t~W~~--~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 168 EGWQRGYCPVCGSP--PVLSVLRGGEREGKRYLHCSLCGTEWRF--VRIKCPYCGNTD 221 (290)
T ss_dssp --TT-SS-TTT-----EEEEEEE------EEEEEETTT--EEE----TTS-TTT---S
T ss_pred CCccCCcCCCCCCc--CceEEEecCCCCccEEEEcCCCCCeeee--cCCCCcCCCCCC
Confidence 34556789999886 22222121 1246689999999965 577899997753
No 136
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.22 E-value=2.9 Score=34.82 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=21.6
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhH
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCA 70 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~ 70 (247)
.+..+|.||++.+...+.+-.+||..+||.
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 445679999998655666667888877763
No 137
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.39 E-value=0.58 Score=43.89 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=36.8
Q ss_pred CcccccccCccCC-CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~-~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..|+||...++-. +...-+.|||.++..||..|+.. ...||.|+..+..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~--~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT--KRKLPSCRRELPK 246 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH--HHHhHHHHhhhhh
Confidence 3599998874221 22334689999999999999983 6679999988765
No 138
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.42 E-value=8.3 Score=38.91 Aligned_cols=47 Identities=32% Similarity=0.688 Sum_probs=34.3
Q ss_pred cccccccCccCCCceEecCCCC-hhhHHHHHHHHhcCC----CCCCCCCCcCCcc
Q 025884 45 VCAICLDKTVLQETALVKGCEH-AYCATCILRWASYVR----NPTCPQCKHPFEF 94 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH-~FC~~Ci~~w~~~~~----~~~CP~CR~~~~~ 94 (247)
.|+||-.. ..-.. .-.|+| ..|..|..+...... ...||+|+..+..
T Consensus 2 ~c~ic~~s--~~~~~-~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFS--PDFVG-RGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecC--ccccc-cccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 49999887 33333 559999 899999998654223 5678999997654
No 139
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=58.14 E-value=13 Score=25.22 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=24.0
Q ss_pred cCcccccccCccCCCc-eEecCCCChhhHHHHH
Q 025884 43 GGVCAICLDKTVLQET-ALVKGCEHAYCATCIL 74 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~p-v~~~~CgH~FC~~Ci~ 74 (247)
...|++|-..|...+. |.-..|+-.+|++|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 4469999999643544 4447899999999954
No 140
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.40 E-value=14 Score=32.93 Aligned_cols=50 Identities=8% Similarity=0.225 Sum_probs=34.3
Q ss_pred CCcCcccccccCccC-CCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVL-QETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~-~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.-.+.|||-.-.+.- ..-..+.+|||.|-..-+... ....|++|...+..
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei----kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI----KASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh----hhccccccCCcccc
Confidence 456789986554211 122335699999998887664 36789999998765
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.28 E-value=10 Score=38.72 Aligned_cols=44 Identities=18% Similarity=0.451 Sum_probs=30.1
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCC--CCcC
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQ--CKHP 91 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~--CR~~ 91 (247)
.|.+|-..| ...-+.--.|+|.-|.+|+..|+. ....||. |.++
T Consensus 781 ~CtVC~~vi-~G~~~~c~~C~H~gH~sh~~sw~~--~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVI-RGVDVWCQVCGHGGHDSHLKSWFF--KASPCAKSICPHL 826 (839)
T ss_pred Cceeeccee-eeeEeecccccccccHHHHHHHHh--cCCCCccccCCcc
Confidence 477887763 222233458999999999999997 4556665 5443
No 142
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=52.80 E-value=15 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.795 Sum_probs=14.3
Q ss_pred ecCCCChhhHHHHHHHHhcCCCCCCCCCC
Q 025884 61 VKGCEHAYCATCILRWASYVRNPTCPQCK 89 (247)
Q Consensus 61 ~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR 89 (247)
-..|.+.||.+|=. ++. ...-.||-|-
T Consensus 24 C~~C~~~FC~dCD~-fiH-E~LH~CPGC~ 50 (51)
T PF07975_consen 24 CPKCKNHFCIDCDV-FIH-ETLHNCPGCE 50 (51)
T ss_dssp -TTTT--B-HHHHH-TTT-TTS-SSSTT-
T ss_pred CCCCCCccccCcCh-hhh-ccccCCcCCC
Confidence 36899999999942 222 2456799883
No 143
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=52.47 E-value=9.2 Score=35.26 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=29.4
Q ss_pred CCCcCcccccccCccCCCceEecCCC--ChhhHHHHHHHHh
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCE--HAYCATCILRWAS 78 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~Cg--H~FC~~Ci~~w~~ 78 (247)
.+....|..|.+. ..+++.++|. |..|.+|+.-|..
T Consensus 218 N~~ni~C~~Ctdv---~~~vlvf~Cns~HvtC~dCFr~yc~ 255 (446)
T KOG0006|consen 218 NSRNITCITCTDV---RSPVLVFQCNSRHVTCLDCFRLYCV 255 (446)
T ss_pred ccccceeEEecCC---ccceEEEecCCceeehHHhhhhHhh
Confidence 4456679999986 6788889999 9999999986654
No 144
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.26 E-value=2.7 Score=37.74 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=33.9
Q ss_pred cCcccccccCccCC----CceEecC--------CCChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 43 GGVCAICLDKTVLQ----ETALVKG--------CEHAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 43 ~~~C~ICl~~~~~~----~pv~~~~--------CgH~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
...|.||...+... .|. ++. |+|..|..|+...+... ...||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~-vl~~~~~~~~~c~htlc~~c~~~~l~~~-~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPL-VLSLSRLKEKIEGHTLCKECIDTILLQA-GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchh-HHHHHHHHHHHHHHHHHhcchHHHHHHh-hhcCCcccce
Confidence 35699998875321 233 345 99999999999987643 3889999874
No 145
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=52.15 E-value=9.5 Score=38.41 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=33.8
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh----cCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS----YVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~----~~~~~~CP~CR~~~~~ 94 (247)
...-.+.|+|+.-. ..-|..-..|.|.-|.+-+ |+. ......||+|...+..
T Consensus 302 ~~~vSL~CPl~~~R--m~~P~r~~~CkHlQcFD~~--~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMR--MSLPARGHTCKHLQCFDAL--SYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred cceeEecCCcccce--eecCCcccccccceecchh--hhHHhccCCCeeeCccCCccccc
Confidence 34456789998887 4445555678887666654 333 1334679999887654
No 146
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.12 E-value=5.3 Score=32.29 Aligned_cols=29 Identities=31% Similarity=0.809 Sum_probs=19.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHH
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILR 75 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~ 75 (247)
..++-+|.||+.. - +.-.||| .|..|-.+
T Consensus 62 v~ddatC~IC~KT--K----FADG~GH-~C~YCq~r 90 (169)
T KOG3799|consen 62 VGDDATCGICHKT--K----FADGCGH-NCSYCQTR 90 (169)
T ss_pred cCcCcchhhhhhc--c----cccccCc-ccchhhhh
Confidence 4566789999986 1 2347888 46666444
No 147
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=49.77 E-value=12 Score=33.58 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=26.4
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHH-HHh--cCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILR-WAS--YVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~-w~~--~~~~~~CP~CR~~~~~ 94 (247)
.+.|.-|..+ -.- .-+.|--.||.+=+.+ -+. ......||-|..+...
T Consensus 171 ~~KC~SCNrl--Gq~--sCLRCK~cfCddHvrrKg~ky~k~k~~PCPKCg~et~e 221 (314)
T PF06524_consen 171 TFKCQSCNRL--GQY--SCLRCKICFCDDHVRRKGFKYEKGKPIPCPKCGYETQE 221 (314)
T ss_pred cccccccccc--cch--hhhheeeeehhhhhhhcccccccCCCCCCCCCCCcccc
Confidence 3445555554 221 1346666677665544 122 1234679999988765
No 148
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=49.64 E-value=15 Score=31.34 Aligned_cols=43 Identities=26% Similarity=0.660 Sum_probs=29.5
Q ss_pred CCCcCccccccc---CccCCC--ceEecCCCChhhHHHHHHHHhcCCCCCCCCCC
Q 025884 40 GNHGGVCAICLD---KTVLQE--TALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (247)
Q Consensus 40 ~~~~~~C~ICl~---~~~~~~--pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR 89 (247)
...++.|-||.+ +|++.. .+.-..|+..||..|+. ...||-|.
T Consensus 149 ~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-------~~~CpkC~ 196 (202)
T PF13901_consen 149 QQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-------KKSCPKCA 196 (202)
T ss_pred HhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-------CCCCCCcH
Confidence 445788999985 233433 23336899999999974 25599994
No 149
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=48.43 E-value=6.3 Score=36.19 Aligned_cols=48 Identities=19% Similarity=0.560 Sum_probs=31.8
Q ss_pred CCCcCcccccccCccCCCceEe----cCCCChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALV----KGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~----~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
......||||-.. ..-.+.. -.=.|.+|..|-..|-- ....||.|...
T Consensus 184 ~~~~~~CPvCGs~--P~~s~v~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~~ 235 (309)
T PRK03564 184 GEQRQFCPVCGSM--PVSSVVQIGTTQGLRYLHCNLCESEWHV--VRVKCSNCEQS 235 (309)
T ss_pred ccCCCCCCCCCCc--chhheeeccCCCCceEEEcCCCCCcccc--cCccCCCCCCC
Confidence 3456789999986 3222211 12234578899999976 57889999763
No 150
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.48 E-value=8.1 Score=39.52 Aligned_cols=35 Identities=20% Similarity=0.579 Sum_probs=25.8
Q ss_pred CcccccccCccCC----CceEecCCCChhhHHHHHHHHh
Q 025884 44 GVCAICLDKTVLQ----ETALVKGCEHAYCATCILRWAS 78 (247)
Q Consensus 44 ~~C~ICl~~~~~~----~pv~~~~CgH~FC~~Ci~~w~~ 78 (247)
..|..|.+.+-.. ..+..+.|+|.||..|+.-...
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~ 823 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESL 823 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHH
Confidence 3799999974211 3455689999999999987544
No 151
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=46.01 E-value=6 Score=36.22 Aligned_cols=47 Identities=17% Similarity=0.516 Sum_probs=31.0
Q ss_pred CCcCcccccccCccCCCceEec-----CCCChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 41 NHGGVCAICLDKTVLQETALVK-----GCEHAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~-----~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
.....||||-.. ..-.+... .=.+.+|..|-..|-- ....||.|...
T Consensus 182 ~~~~~CPvCGs~--P~~s~~~~~~~~~G~RyL~CslC~teW~~--~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSP--PVASMVRQGGKETGLRYLSCSLCATEWHY--VRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCCh--hhhhhhcccCCCCCceEEEcCCCCCcccc--cCccCCCCCCC
Confidence 445689999986 32221111 1225678889999976 57889999874
No 152
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.00 E-value=16 Score=26.40 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=26.9
Q ss_pred ccccccCccCC-CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 46 CAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 46 C~ICl~~~~~~-~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
|--|-..+... ....+-.=.|+||.+|...-+ ...||.|...+..
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l----~g~CPnCGGelv~ 53 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRL----HGLCPNCGGELVA 53 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhh----cCcCCCCCchhhc
Confidence 55555543211 122232335679999988655 3569999887653
No 153
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.11 E-value=14 Score=27.87 Aligned_cols=12 Identities=25% Similarity=1.146 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHh
Q 025884 67 AYCATCILRWAS 78 (247)
Q Consensus 67 ~FC~~Ci~~w~~ 78 (247)
.||..||..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999997
No 154
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=43.47 E-value=38 Score=23.17 Aligned_cols=45 Identities=22% Similarity=0.517 Sum_probs=28.0
Q ss_pred cccccccCccCCC-ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 45 VCAICLDKTVLQE-TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 45 ~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
.|-.|-..+.... ...+-.=..+||.+|....+. ..||.|...|.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~----~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN----GVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc----CcCcCCCCccc
Confidence 4777777643332 122212223699999988663 56999988764
No 155
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=43.23 E-value=27 Score=32.28 Aligned_cols=52 Identities=19% Similarity=0.520 Sum_probs=30.2
Q ss_pred CCCcCcccccccCccCC-Cc-----------------eEecCCCChhhHHHHHH-HHhc-------CCCCCCCCCCcCCc
Q 025884 40 GNHGGVCAICLDKTVLQ-ET-----------------ALVKGCEHAYCATCILR-WASY-------VRNPTCPQCKHPFE 93 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~-~p-----------------v~~~~CgH~FC~~Ci~~-w~~~-------~~~~~CP~CR~~~~ 93 (247)
+.....||+|+.. .+ .| ....|||| .|..=-.. |... .-...||.|-..+.
T Consensus 338 g~~~r~CPmC~~~--gp~V~L~lG~E~~f~vD~G~pthaF~PCGH-v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 338 GQRERECPMCRVV--GPYVPLWLGCEAGFYVDAGPPTHAFNPCGH-VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred CcccCcCCeeeee--cceeeeeccccceeEecCCCcccccCCccc-ccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4446789999875 11 01 01248999 45554444 5542 11356999988765
Q ss_pred c
Q 025884 94 F 94 (247)
Q Consensus 94 ~ 94 (247)
-
T Consensus 415 g 415 (429)
T KOG3842|consen 415 G 415 (429)
T ss_pred c
Confidence 3
No 156
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=42.72 E-value=14 Score=33.05 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=36.1
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
--.+.|||=... ..+|+....|||.|=.+=|..++.......||+-..+
T Consensus 174 ~fs~rdPis~~~--I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 174 VFSNRDPISKKP--IVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hhcccCchhhhh--hhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 345679986665 5788878899999999999988763345668874333
No 157
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=42.56 E-value=20 Score=31.50 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcCCcccc
Q 025884 68 YCATCILRWASYVRNPTCPQCKHPFEFLH 96 (247)
Q Consensus 68 FC~~Ci~~w~~~~~~~~CP~CR~~~~~~~ 96 (247)
-|.+|...... +...||+|+....+.+
T Consensus 196 ~C~sC~qqIHR--NAPiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHR--NAPICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhc--CCCCCcccccccccCC
Confidence 48999888776 6889999998765533
No 158
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=42.42 E-value=8.2 Score=26.70 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=16.8
Q ss_pred cCcccccccCccCCC-ceEecCCCChhhHHHHHHH
Q 025884 43 GGVCAICLDKTVLQE-TALVKGCEHAYCATCILRW 76 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w 76 (247)
...|.+|...|.+.. ...-..||+.||..|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 446999999864432 2223689999999987543
No 159
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=42.02 E-value=25 Score=32.55 Aligned_cols=44 Identities=20% Similarity=0.613 Sum_probs=30.3
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
.|-.|.+.......++-..|.|.||.+|=.-... .-..||-|.+
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHe--sLh~CpgCeh 375 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIHE--SLHNCPGCEH 375 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHHh--hhhcCCCcCC
Confidence 3999976543445555678999999999543322 3456999974
No 160
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=40.98 E-value=18 Score=31.93 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=16.5
Q ss_pred CcccccccCccCCCceEecCCCChh
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAY 68 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~F 68 (247)
+.||+|...+........-+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 6899999985433443344667766
No 161
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.88 E-value=20 Score=23.55 Aligned_cols=34 Identities=18% Similarity=0.480 Sum_probs=23.1
Q ss_pred cccccccCccCCC-ceEecCCCChhhHHHHHHHHh
Q 025884 45 VCAICLDKTVLQE-TALVKGCEHAYCATCILRWAS 78 (247)
Q Consensus 45 ~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~~ 78 (247)
.|.+|...|.+.. ...-..||+.||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 5889987653322 222358999999999876543
No 162
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=39.25 E-value=6.2 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.658 Sum_probs=21.3
Q ss_pred ccc--ccccCccCC----CceEe-cCCCChhhHHHHHHHHh
Q 025884 45 VCA--ICLDKTVLQ----ETALV-KGCEHAYCATCILRWAS 78 (247)
Q Consensus 45 ~C~--ICl~~~~~~----~pv~~-~~CgH~FC~~Ci~~w~~ 78 (247)
-|| -|...+... .+... ..|+|.||..|...|..
T Consensus 20 ~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 20 WCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred CCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCCC
Confidence 477 676653222 22223 36899999999888753
No 163
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.53 E-value=11 Score=35.68 Aligned_cols=33 Identities=21% Similarity=0.593 Sum_probs=0.0
Q ss_pred cCCCChhhHHHHHHHHhc-------CCCCCCCCCCcCCcc
Q 025884 62 KGCEHAYCATCILRWASY-------VRNPTCPQCKHPFEF 94 (247)
Q Consensus 62 ~~CgH~FC~~Ci~~w~~~-------~~~~~CP~CR~~~~~ 94 (247)
-||||..--....-|... .-...||.|-.++..
T Consensus 363 ~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 363 NPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------
T ss_pred cccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 499996444444447652 112569999888753
No 165
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=33.39 E-value=33 Score=31.69 Aligned_cols=45 Identities=20% Similarity=0.063 Sum_probs=31.3
Q ss_pred CcCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
..+.|-+|..- .-... ..+|+|+ ||.+|-. +. -..+||.|-+...
T Consensus 342 s~~~~~~~~~~--~~st~-~~~~~~n~~~~~~a~--~s--~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 342 SSLKGTSAGFG--LLSTI-WSGGNMNLSPGSLAS--AS--ASPTSSTCDHNDH 387 (394)
T ss_pred hhcccccccCc--eeeeE-eecCCcccChhhhhh--cc--cCCccccccccce
Confidence 45568888775 33333 5699996 8999976 22 4688999987654
No 166
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=33.31 E-value=32 Score=30.27 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=20.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcCCccc
Q 025884 68 YCATCILRWASYVRNPTCPQCKHPFEFL 95 (247)
Q Consensus 68 FC~~Ci~~w~~~~~~~~CP~CR~~~~~~ 95 (247)
.|..|..+... +...||+|+....+.
T Consensus 251 ~ClsChqqIHR--NAPiCPlCKaKsRSr 276 (286)
T KOG4451|consen 251 VCLSCHQQIHR--NAPICPLCKAKSRSR 276 (286)
T ss_pred HHHHHHHHHhc--CCCCCcchhhccccC
Confidence 58889888766 678999998876543
No 167
>PLN02705 beta-amylase
Probab=32.45 E-value=1e+02 Score=31.12 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025884 214 KRALKREAADKAAASKHQQHLARLG 238 (247)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
-+.+.||+..+|-++||-.=|+++|
T Consensus 86 e~~~~rer~rrai~~ki~aglr~~g 110 (681)
T PLN02705 86 ERTKLRERHRRAITSRMLAGLRQYG 110 (681)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566788999999999999999998
No 168
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=31.34 E-value=21 Score=22.93 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=27.5
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHh----cCCCCCCCCCC
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWAS----YVRNPTCPQCK 89 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~----~~~~~~CP~CR 89 (247)
.|.||...-....-+.--.|+..||..|+..-.. ......||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3888888522233333467888999999855222 11256787774
No 169
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=31.32 E-value=24 Score=27.44 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=28.4
Q ss_pred CcCcccccccCccCC--CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 42 HGGVCAICLDKTVLQ--ETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~--~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
..-.|.+|...|.+. ....-..|.|.+|..|-.. ........|.+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 344799998864332 2344578999999998543 21123445887755
No 170
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=30.58 E-value=13 Score=38.37 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=24.6
Q ss_pred cCcccccccCccCCC-ceEecCCCChhhHHHHHHHH
Q 025884 43 GGVCAICLDKTVLQE-TALVKGCEHAYCATCILRWA 77 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~ 77 (247)
.-.|-.|... ..+ --....|++.||..|+..|.
T Consensus 229 ~~mC~~C~~t--lfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETT--LFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhccc--ccceeEEccccCCeeeecchhhcc
Confidence 3468899886 333 22245899999999999995
No 171
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.20 E-value=21 Score=34.24 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=14.4
Q ss_pred ecCCCChhhHHHHHHHHh
Q 025884 61 VKGCEHAYCATCILRWAS 78 (247)
Q Consensus 61 ~~~CgH~FC~~Ci~~w~~ 78 (247)
.-.|||.||..|...|..
T Consensus 181 ~C~~g~~FC~~C~~~~H~ 198 (444)
T KOG1815|consen 181 DCGCGHEFCFACGEESHS 198 (444)
T ss_pred eCCCCchhHhhccccccC
Confidence 568999999999866643
No 172
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=29.72 E-value=23 Score=31.27 Aligned_cols=14 Identities=43% Similarity=1.070 Sum_probs=9.8
Q ss_pred CCCCCCCCCcCCcc
Q 025884 81 RNPTCPQCKHPFEF 94 (247)
Q Consensus 81 ~~~~CP~CR~~~~~ 94 (247)
....||.|...|..
T Consensus 273 p~~~C~~C~skF~~ 286 (296)
T COG5242 273 PVPVCKKCKSKFSF 286 (296)
T ss_pred CcCcCccccccccc
Confidence 45668888877753
No 173
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=29.60 E-value=19 Score=32.44 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=36.0
Q ss_pred CCcCcccccccCccCCCc-------eEecCCCChhhHHHHHH-HHhcCC--------CCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQET-------ALVKGCEHAYCATCILR-WASYVR--------NPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p-------v~~~~CgH~FC~~Ci~~-w~~~~~--------~~~CP~CR~~~~~ 94 (247)
...+.|.+|-..+ +.-| +-.++|.-.+|..-+.+ |+.++. -+.||.|...|..
T Consensus 159 ~ka~~C~~C~K~Y-vSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVY-VSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCcee-eehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 3456788887754 2222 11368888899888876 987422 2679999999876
No 174
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.57 E-value=27 Score=28.09 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=14.7
Q ss_pred ccccCccCCCceEecCCCChhhHH
Q 025884 48 ICLDKTVLQETALVKGCEHAYCAT 71 (247)
Q Consensus 48 ICl~~~~~~~pv~~~~CgH~FC~~ 71 (247)
||++. ...+..-.|||.||..
T Consensus 62 i~qs~---~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSA---QKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecc---cccEEEEeccccccCh
Confidence 56665 3345567999999963
No 175
>PF14353 CpXC: CpXC protein
Probab=29.42 E-value=30 Score=27.01 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=23.6
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhc-CCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-VRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~-~~~~~CP~CR~~~~~ 94 (247)
.+||.|...+...-...+-. ..-..-....+.. -...+||.|...+..
T Consensus 2 itCP~C~~~~~~~v~~~I~~---~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINA---DEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcC---cCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 57999988742222211111 1112222333321 124679999998754
No 176
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=29.40 E-value=39 Score=32.53 Aligned_cols=15 Identities=20% Similarity=0.373 Sum_probs=11.1
Q ss_pred eeccCcCCCCCcccc
Q 025884 161 RIGNRRWGDNGYVRA 175 (247)
Q Consensus 161 ~ignrr~g~~g~~~~ 175 (247)
.-||....+.||-.+
T Consensus 98 ddG~~TDnE~GFAdS 112 (458)
T PF10446_consen 98 DDGNETDNEAGFADS 112 (458)
T ss_pred ccCccCccccccccc
Confidence 457877777787776
No 177
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=28.87 E-value=24 Score=31.17 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=33.3
Q ss_pred Cccc--ccccCccCCCceEecCCCChhhHHHHHH------HHh--cCCCCCCCCCCcCCcc
Q 025884 44 GVCA--ICLDKTVLQETALVKGCEHAYCATCILR------WAS--YVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~--ICl~~~~~~~pv~~~~CgH~FC~~Ci~~------w~~--~~~~~~CP~CR~~~~~ 94 (247)
--|. .|..+ ..-|+.--.|++.||.+=... |.. .....+||.|..++..
T Consensus 9 kHCs~~~Ckql--DFLPf~Cd~C~~~FC~eHrsye~H~Cp~~~~~~~~v~icp~cs~pv~~ 67 (250)
T KOG3183|consen 9 KHCSVPYCKQL--DFLPFKCDGCSGIFCLEHRSYESHHCPKGLRIDVQVPICPLCSKPVPT 67 (250)
T ss_pred cccCcchhhhc--cccceeeCCccchhhhccchHhhcCCCcccccceeecccCCCCCCCCC
Confidence 3477 78887 667777789999999853221 221 1235789999988764
No 178
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.05 E-value=8.7 Score=21.27 Aligned_cols=8 Identities=38% Similarity=1.128 Sum_probs=3.6
Q ss_pred CCCCCCCc
Q 025884 83 PTCPQCKH 90 (247)
Q Consensus 83 ~~CP~CR~ 90 (247)
..||.|..
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 33555443
No 179
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=27.90 E-value=34 Score=32.91 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=7.6
Q ss_pred ChhhHH--HHHHHHh
Q 025884 66 HAYCAT--CILRWAS 78 (247)
Q Consensus 66 H~FC~~--Ci~~w~~ 78 (247)
|-|... +-..|+.
T Consensus 3 HEFaSs~~e~ddWi~ 17 (458)
T PF10446_consen 3 HEFASSEPEEDDWIR 17 (458)
T ss_pred cccccCccchhhhhh
Confidence 555554 4456886
No 180
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=27.65 E-value=15 Score=20.93 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=7.0
Q ss_pred CCCCCCcCCcc
Q 025884 84 TCPQCKHPFEF 94 (247)
Q Consensus 84 ~CP~CR~~~~~ 94 (247)
.||+|...+..
T Consensus 3 ~CPiC~~~v~~ 13 (26)
T smart00734 3 QCPVCFREVPE 13 (26)
T ss_pred cCCCCcCcccH
Confidence 47777666543
No 181
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.20 E-value=65 Score=25.18 Aligned_cols=44 Identities=18% Similarity=0.452 Sum_probs=29.1
Q ss_pred CcccccccCccCC-----------CceEecCCCChhhHHHHHHHHhcCCCCCCCCCC
Q 025884 44 GVCAICLDKTVLQ-----------ETALVKGCEHAYCATCILRWASYVRNPTCPQCK 89 (247)
Q Consensus 44 ~~C~ICl~~~~~~-----------~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR 89 (247)
..|--|+..|... ....-..|.+.||.+|=.-+.. ....||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe--~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHE--SLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhh--hccCCcCCC
Confidence 3599999974211 0122358999999999655554 456699985
No 182
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=26.00 E-value=50 Score=30.96 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=24.9
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc----------------CCCCCCCCCCcC
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY----------------VRNPTCPQCKHP 91 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~----------------~~~~~CP~CR~~ 91 (247)
.+..||+|-+.. ..--.-++.|.. |..-+.+-+.+ ...+.||.||..
T Consensus 14 l~ElCPVCGDkV-SGYHYGLLTCES--CKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 14 LGELCPVCGDKV-SGYHYGLLTCES--CKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred cccccccccCcc-ccceeeeeehhh--hhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 345799999972 112222445542 44334443332 123669999864
No 183
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=25.69 E-value=80 Score=23.69 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=22.3
Q ss_pred CcCcccccccCccCCCceEec--CCCChhhHHHHHH
Q 025884 42 HGGVCAICLDKTVLQETALVK--GCEHAYCATCILR 75 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~--~CgH~FC~~Ci~~ 75 (247)
....|.||... ..-.++-. .|...||..|...
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 46789999997 44333222 4778999999755
No 184
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=25.08 E-value=1.9e+02 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=15.6
Q ss_pred HHHHHHHHHH----HHHHHHHHhhhHH
Q 025884 220 EAADKAAASK----HQQHLARLGRNLE 242 (247)
Q Consensus 220 ~~~~~~~~~~----~~~~~~~~~~~~~ 242 (247)
.++.|.+-++ |++||.+|...++
T Consensus 74 L~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 74 LKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555 8999999887764
No 185
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.71 E-value=24 Score=23.34 Aligned_cols=11 Identities=36% Similarity=1.102 Sum_probs=5.9
Q ss_pred CCCCCCcCCcc
Q 025884 84 TCPQCKHPFEF 94 (247)
Q Consensus 84 ~CP~CR~~~~~ 94 (247)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999998864
No 186
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.61 E-value=53 Score=30.47 Aligned_cols=36 Identities=28% Similarity=0.608 Sum_probs=21.7
Q ss_pred CcCccc--ccccCccCCCc----eEe-cCCCChhhHHHHHHHHh
Q 025884 42 HGGVCA--ICLDKTVLQET----ALV-KGCEHAYCATCILRWAS 78 (247)
Q Consensus 42 ~~~~C~--ICl~~~~~~~p----v~~-~~CgH~FC~~Ci~~w~~ 78 (247)
.+..|| -|-.-| +.+| ++- -.||-.||..|+..|..
T Consensus 314 gGVlCP~pgCG~gl-l~EPD~rkvtC~~gCgf~FCR~C~e~yh~ 356 (446)
T KOG0006|consen 314 GGVLCPRPGCGAGL-LPEPDQRKVTCEGGCGFAFCRECKEAYHE 356 (446)
T ss_pred CCEecCCCCCCccc-ccCCCCCcccCCCCchhHhHHHHHhhhcc
Confidence 356676 465432 3333 222 24999999999986543
No 187
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=24.36 E-value=37 Score=34.20 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=31.1
Q ss_pred CCcCcccccccCccCCCc----eEecCCCChhhHHHHHHHHhc---CCCCCCCCCCc
Q 025884 41 NHGGVCAICLDKTVLQET----ALVKGCEHAYCATCILRWASY---VRNPTCPQCKH 90 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p----v~~~~CgH~FC~~Ci~~w~~~---~~~~~CP~CR~ 90 (247)
...+.|+||-.. -..+ +....|+-.||..|+..|+.. .+...||-||.
T Consensus 16 ~~~~mc~l~~s~--G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 16 IVCLMCPLCGSS--GKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhhhccc--cccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 345568888664 2221 123478888999999999872 23456888776
No 188
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.00 E-value=55 Score=27.10 Aligned_cols=25 Identities=24% Similarity=0.804 Sum_probs=19.9
Q ss_pred CChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 65 EHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 65 gH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.||..|-..-+. .||.|..++.-
T Consensus 27 ~~~fC~kCG~~tI~-----~Cp~C~~~IrG 51 (158)
T PF10083_consen 27 REKFCSKCGAKTIT-----SCPNCSTPIRG 51 (158)
T ss_pred HHHHHHHhhHHHHH-----HCcCCCCCCCC
Confidence 46799999877554 39999999875
No 189
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=22.94 E-value=23 Score=29.15 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=23.8
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+..+.||.|...|.+.+.+ . ..+.||.|..++..
T Consensus 105 ~~~~~Y~Cp~c~~r~tf~eA~------------------~--~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 105 TNNMFFICPNMCVRFTFNEAM------------------E--LNFTCPRCGAMLDY 140 (158)
T ss_pred cCCCeEECCCCCcEeeHHHHH------------------H--cCCcCCCCCCEeee
Confidence 345677888888764333332 1 37889999998654
No 190
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=21.16 E-value=91 Score=18.00 Aligned_cols=36 Identities=22% Similarity=0.547 Sum_probs=20.1
Q ss_pred ccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
|..|...|.....+ +..=+..||..| +.|..|..++
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~C----------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPEC----------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccC----------CCCcccCCcC
Confidence 77888874222122 333456666655 3477776654
No 191
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=21.12 E-value=33 Score=28.82 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=23.5
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+..+.||.|.-.|.+.+++ . ..+.||.|..++..
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~------------------~--~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAM------------------E--YGFRCPQCGEMLEE 148 (178)
T ss_pred CCCEEECCCCCcEEeHHHHh------------------h--cCCcCCCCCCCCee
Confidence 44677888887764333321 1 47889999998765
No 192
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.31 E-value=79 Score=27.25 Aligned_cols=38 Identities=24% Similarity=0.619 Sum_probs=22.0
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
.|.+|...+ ... .+.+|..|...|... ...||.|..++
T Consensus 7 ~C~~C~~~~--~~~------~~~lC~~C~~~l~~~--~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPL--ALS------HWGICSVCSRALRTL--KTCCPQCGLPA 44 (227)
T ss_pred cCccCCCcc--CCC------CCcccHHHHhhCCcc--cCcCccCCCcC
Confidence 588888762 111 123688887765321 24677777654
No 193
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=20.29 E-value=56 Score=24.52 Aligned_cols=38 Identities=26% Similarity=0.634 Sum_probs=27.3
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.-.|.||-.. +. .=||.||..|-. ....|.+|-..+..
T Consensus 44 ~~~C~~CK~~--v~------q~g~~YCq~CAY------kkGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTK--VH------QPGAKYCQTCAY------KKGICAMCGKKILD 81 (90)
T ss_pred Cccccccccc--cc------cCCCccChhhhc------ccCcccccCCeecc
Confidence 4469999887 22 337789999942 35679999988743
Done!