Query 025884
Match_columns 247
No_of_seqs 216 out of 1763
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 19:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djb_A Polycomb group ring fin 99.4 5.9E-13 2E-17 94.3 5.8 53 38-94 10-62 (72)
2 2kiz_A E3 ubiquitin-protein li 99.4 9.8E-13 3.3E-17 92.2 5.9 54 40-95 11-64 (69)
3 3ztg_A E3 ubiquitin-protein li 99.3 4.1E-13 1.4E-17 99.3 4.0 52 39-93 9-61 (92)
4 1t1h_A Gspef-atpub14, armadill 99.3 7.6E-13 2.6E-17 94.9 4.5 58 40-101 5-64 (78)
5 2yur_A Retinoblastoma-binding 99.3 9.3E-13 3.2E-17 93.9 4.8 52 39-93 11-63 (74)
6 3lrq_A E3 ubiquitin-protein li 99.3 4E-13 1.4E-17 101.4 2.8 50 42-94 21-70 (100)
7 2ecw_A Tripartite motif-contai 99.3 2.3E-12 8E-17 93.1 6.5 61 40-103 16-82 (85)
8 2ect_A Ring finger protein 126 99.3 2.1E-12 7.2E-17 92.6 5.7 53 40-94 12-64 (78)
9 2egp_A Tripartite motif-contai 99.3 7.3E-13 2.5E-17 95.0 3.1 62 39-103 8-76 (79)
10 4ayc_A E3 ubiquitin-protein li 99.3 8.1E-13 2.8E-17 105.3 3.3 49 42-95 52-100 (138)
11 2ecv_A Tripartite motif-contai 99.3 3.5E-12 1.2E-16 92.2 5.8 62 39-103 15-82 (85)
12 2ep4_A Ring finger protein 24; 99.3 3.1E-12 1.1E-16 90.8 5.4 53 40-94 12-64 (74)
13 2l0b_A E3 ubiquitin-protein li 99.3 1.6E-12 5.4E-17 96.5 3.8 51 41-93 38-88 (91)
14 2csy_A Zinc finger protein 183 99.3 2.9E-12 9.9E-17 92.7 4.9 50 39-93 11-60 (81)
15 2y43_A E3 ubiquitin-protein li 99.3 1.1E-12 3.6E-17 98.5 2.6 56 42-101 21-78 (99)
16 2ysl_A Tripartite motif-contai 99.3 4.2E-12 1.4E-16 89.7 5.6 53 39-94 16-69 (73)
17 2d8t_A Dactylidin, ring finger 99.3 2.3E-12 7.8E-17 91.0 4.1 50 40-94 12-61 (71)
18 1iym_A EL5; ring-H2 finger, ub 99.3 2.7E-12 9.4E-17 85.8 4.2 51 41-93 3-54 (55)
19 3fl2_A E3 ubiquitin-protein li 99.3 1.1E-12 3.6E-17 102.6 2.3 50 41-94 50-99 (124)
20 2kr4_A Ubiquitin conjugation f 99.3 3.1E-12 1.1E-16 94.0 4.5 58 38-100 9-68 (85)
21 2ecy_A TNF receptor-associated 99.3 4E-12 1.4E-16 88.4 4.7 52 39-94 11-62 (66)
22 1chc_A Equine herpes virus-1 r 99.2 4E-12 1.4E-16 88.7 4.0 49 42-94 4-52 (68)
23 1x4j_A Ring finger protein 38; 99.2 2.6E-12 8.8E-17 91.6 2.9 52 41-94 21-72 (75)
24 2ckl_A Polycomb group ring fin 99.2 5E-12 1.7E-16 96.4 4.6 49 42-94 14-62 (108)
25 3ng2_A RNF4, snurf, ring finge 99.2 3.1E-12 1E-16 89.8 2.9 51 40-94 7-63 (71)
26 2kre_A Ubiquitin conjugation f 99.2 5.7E-12 2E-16 95.4 4.4 51 39-94 25-75 (100)
27 2ct2_A Tripartite motif protei 99.2 1E-11 3.4E-16 90.6 5.4 53 39-94 11-68 (88)
28 2ea6_A Ring finger protein 4; 99.2 4.3E-12 1.5E-16 88.4 3.3 51 39-93 11-67 (69)
29 1z6u_A NP95-like ring finger p 99.2 1.1E-12 3.7E-17 106.4 -0.1 50 41-94 76-125 (150)
30 1wgm_A Ubiquitin conjugation f 99.2 9.2E-12 3.2E-16 94.0 5.0 51 39-94 18-69 (98)
31 2ysj_A Tripartite motif-contai 99.2 1.6E-11 5.4E-16 84.5 5.5 47 39-88 16-63 (63)
32 2ecm_A Ring finger and CHY zin 99.2 1E-11 3.5E-16 82.9 3.9 50 42-93 4-54 (55)
33 2xeu_A Ring finger protein 4; 99.2 5.6E-12 1.9E-16 86.5 2.3 49 42-94 2-56 (64)
34 1g25_A CDK-activating kinase a 99.2 1.3E-11 4.5E-16 85.5 3.4 50 42-94 2-55 (65)
35 2ecj_A Tripartite motif-contai 99.2 3.1E-11 1.1E-15 81.3 5.2 47 39-88 11-58 (58)
36 2ckl_B Ubiquitin ligase protei 99.1 2.2E-11 7.4E-16 99.6 4.2 51 41-94 52-102 (165)
37 1v87_A Deltex protein 2; ring- 99.1 4.4E-11 1.5E-15 91.7 5.7 53 43-95 25-95 (114)
38 2ecn_A Ring finger protein 141 99.1 1.5E-11 5E-16 86.3 2.6 50 39-94 11-60 (70)
39 1jm7_A BRCA1, breast cancer ty 99.1 4.4E-11 1.5E-15 91.1 5.4 49 43-94 21-70 (112)
40 2ecl_A Ring-box protein 2; RNF 99.1 4.5E-11 1.6E-15 86.8 4.7 51 42-94 14-76 (81)
41 3l11_A E3 ubiquitin-protein li 99.1 8.2E-12 2.8E-16 96.1 0.6 51 40-94 12-62 (115)
42 1e4u_A Transcriptional repress 99.1 6.5E-11 2.2E-15 85.7 5.1 53 40-94 8-62 (78)
43 2c2l_A CHIP, carboxy terminus 99.1 4.1E-11 1.4E-15 104.5 4.6 53 38-94 203-255 (281)
44 1jm7_B BARD1, BRCA1-associated 99.1 1.1E-11 3.6E-16 96.0 0.3 57 42-104 21-79 (117)
45 3hct_A TNF receptor-associated 99.1 5.3E-11 1.8E-15 92.2 4.1 53 38-94 13-65 (118)
46 1rmd_A RAG1; V(D)J recombinati 99.1 4.2E-11 1.5E-15 92.2 3.3 49 42-94 22-70 (116)
47 3dpl_R Ring-box protein 1; ubi 99.0 1.4E-10 4.7E-15 88.8 4.9 50 43-94 37-101 (106)
48 2yu4_A E3 SUMO-protein ligase 99.0 9.3E-11 3.2E-15 87.5 3.8 57 41-99 5-70 (94)
49 2f42_A STIP1 homology and U-bo 99.0 9.5E-11 3.2E-15 97.6 3.7 57 39-99 102-160 (179)
50 4ap4_A E3 ubiquitin ligase RNF 99.0 9.8E-11 3.4E-15 91.2 3.4 50 41-94 5-60 (133)
51 3htk_C E3 SUMO-protein ligase 99.0 9.4E-11 3.2E-15 102.6 2.3 64 36-101 174-241 (267)
52 3knv_A TNF receptor-associated 99.0 6.8E-11 2.3E-15 94.8 1.0 51 39-93 27-77 (141)
53 2d8s_A Cellular modulator of i 98.9 7.1E-10 2.4E-14 80.6 5.0 54 40-94 12-70 (80)
54 1bor_A Transcription factor PM 98.9 2.2E-10 7.5E-15 77.3 2.0 46 41-94 4-49 (56)
55 4ic3_A E3 ubiquitin-protein li 98.9 2.4E-10 8.3E-15 81.5 1.5 44 42-94 23-67 (74)
56 3hcs_A TNF receptor-associated 98.9 8E-10 2.7E-14 90.5 4.4 54 37-94 12-65 (170)
57 2vje_A E3 ubiquitin-protein li 98.9 7.8E-10 2.7E-14 76.7 3.2 49 42-94 7-57 (64)
58 4a0k_B E3 ubiquitin-protein li 98.8 3.9E-10 1.3E-14 87.7 0.5 50 43-94 48-112 (117)
59 2y1n_A E3 ubiquitin-protein li 98.8 1.7E-09 5.9E-14 99.7 4.8 49 42-94 331-379 (389)
60 2vje_B MDM4 protein; proto-onc 98.8 1.3E-09 4.3E-14 75.4 2.9 49 42-94 6-56 (63)
61 4ap4_A E3 ubiquitin ligase RNF 98.8 1.3E-09 4.5E-14 84.7 1.9 51 40-94 69-125 (133)
62 1wim_A KIAA0161 protein; ring 98.7 3E-09 1E-13 79.0 2.6 54 41-94 3-66 (94)
63 2ct0_A Non-SMC element 1 homol 98.7 9.6E-09 3.3E-13 73.5 5.0 52 41-94 13-64 (74)
64 2ecg_A Baculoviral IAP repeat- 98.7 2.2E-09 7.4E-14 76.5 1.5 43 43-94 25-68 (75)
65 2yho_A E3 ubiquitin-protein li 98.7 2.4E-09 8.3E-14 77.4 1.2 43 43-94 18-61 (79)
66 2ea5_A Cell growth regulator w 98.6 3.1E-08 1.1E-12 69.5 4.7 46 40-94 12-58 (68)
67 2bay_A PRE-mRNA splicing facto 98.5 3.4E-08 1.2E-12 67.9 2.7 48 43-94 3-50 (61)
68 3t6p_A Baculoviral IAP repeat- 98.5 2.1E-08 7.2E-13 91.4 1.0 45 41-94 293-338 (345)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.6E-07 5.6E-12 64.3 3.4 49 42-93 5-58 (60)
70 3vk6_A E3 ubiquitin-protein li 98.2 9.6E-07 3.3E-11 66.1 4.1 48 45-95 3-50 (101)
71 3k1l_B Fancl; UBC, ring, RWD, 98.1 6.1E-07 2.1E-11 81.3 0.5 53 41-93 306-372 (381)
72 3nw0_A Non-structural maintena 97.5 6.3E-05 2.2E-09 65.0 4.7 51 42-94 179-229 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0047 1.6E-07 45.5 2.4 34 42-76 2-36 (101)
74 3i2d_A E3 SUMO-protein ligase 95.5 0.0056 1.9E-07 55.9 2.7 52 41-94 247-300 (371)
75 2ko5_A Ring finger protein Z; 94.0 0.021 7E-07 42.1 1.8 45 44-94 29-73 (99)
76 3m62_A Ubiquitin conjugation f 91.8 0.11 3.7E-06 52.8 3.9 60 37-101 885-947 (968)
77 4fo9_A E3 SUMO-protein ligase 87.7 0.56 1.9E-05 42.5 4.8 52 41-94 213-266 (360)
78 2cs3_A Protein C14ORF4, MY039 87.0 0.76 2.6E-05 32.8 4.1 45 40-87 12-63 (93)
79 2lri_C Autoimmune regulator; Z 84.6 0.92 3.2E-05 30.9 3.6 47 42-91 11-59 (66)
80 1weo_A Cellulose synthase, cat 84.6 1.4 4.9E-05 31.9 4.7 51 42-93 15-69 (93)
81 2k16_A Transcription initiatio 78.5 0.83 2.8E-05 31.6 1.6 53 40-92 15-69 (75)
82 2lbm_A Transcriptional regulat 77.0 3.4 0.00012 32.5 4.9 49 40-91 60-117 (142)
83 1wil_A KIAA1045 protein; ring 72.6 3.9 0.00013 29.3 3.8 48 42-90 14-75 (89)
84 2l43_A N-teminal domain from h 70.0 1.5 5E-05 31.6 1.1 53 40-92 22-76 (88)
85 2l5u_A Chromodomain-helicase-D 69.2 3 0.0001 27.7 2.5 48 40-90 8-57 (61)
86 3o36_A Transcription intermedi 67.3 1.3 4.5E-05 35.8 0.4 47 43-92 4-52 (184)
87 2lv9_A Histone-lysine N-methyl 66.5 2 7E-05 31.4 1.3 49 41-90 26-75 (98)
88 3u5n_A E3 ubiquitin-protein li 64.6 1.2 4.1E-05 36.9 -0.4 48 42-92 6-55 (207)
89 1f62_A Transcription factor WS 62.6 4.4 0.00015 25.5 2.2 46 45-90 2-49 (51)
90 1weu_A Inhibitor of growth fam 62.5 3 0.0001 30.3 1.5 50 40-91 33-85 (91)
91 3ql9_A Transcriptional regulat 62.2 8.7 0.0003 29.6 4.2 49 40-91 54-111 (129)
92 3mjh_B Early endosome antigen 62.2 1.5 5.1E-05 26.0 -0.1 11 42-52 4-14 (34)
93 1mm2_A MI2-beta; PHD, zinc fin 61.8 1.6 5.5E-05 29.0 -0.0 48 41-91 7-56 (61)
94 2ysm_A Myeloid/lymphoid or mix 60.0 3 0.0001 30.8 1.2 50 40-89 4-55 (111)
95 3fyb_A Protein of unknown func 57.8 3.6 0.00012 30.3 1.2 12 67-78 41-52 (104)
96 2o35_A Hypothetical protein DU 57.7 3.6 0.00012 30.4 1.2 12 67-78 42-53 (105)
97 1wep_A PHF8; structural genomi 57.3 6 0.0002 27.5 2.3 53 40-93 9-65 (79)
98 1wen_A Inhibitor of growth fam 57.1 4.7 0.00016 27.7 1.7 49 40-91 13-65 (71)
99 2jmo_A Parkin; IBR, E3 ligase, 56.4 1.3 4.4E-05 31.2 -1.4 35 43-77 25-69 (80)
100 2d8v_A Zinc finger FYVE domain 56.3 5.6 0.00019 27.1 1.9 33 41-77 6-39 (67)
101 2ku3_A Bromodomain-containing 55.9 3.4 0.00012 28.4 0.8 51 40-90 13-65 (71)
102 1z60_A TFIIH basal transcripti 53.4 5.2 0.00018 26.6 1.4 42 45-88 17-58 (59)
103 1wfk_A Zinc finger, FYVE domai 53.1 8.3 0.00028 27.5 2.5 36 40-75 6-42 (88)
104 1fp0_A KAP-1 corepressor; PHD 52.0 5.4 0.00018 28.7 1.3 49 40-91 22-72 (88)
105 1z2q_A LM5-1; membrane protein 51.1 8.5 0.00029 27.0 2.3 35 41-75 19-54 (84)
106 2yql_A PHD finger protein 21A; 50.9 1.4 4.7E-05 28.7 -1.9 48 40-90 6-55 (56)
107 2yw8_A RUN and FYVE domain-con 49.6 8.3 0.00029 27.0 2.0 34 42-75 18-52 (82)
108 1we9_A PHD finger family prote 49.3 7.7 0.00026 25.6 1.7 52 40-91 3-58 (64)
109 1joc_A EEA1, early endosomal a 49.2 6.9 0.00024 29.8 1.7 34 42-75 68-102 (125)
110 2xqn_T Testin, TESS; metal-bin 48.3 14 0.00048 27.3 3.3 47 42-94 29-75 (126)
111 3t7l_A Zinc finger FYVE domain 46.4 9 0.00031 27.3 1.8 34 43-76 20-54 (90)
112 1x4u_A Zinc finger, FYVE domai 46.4 10 0.00036 26.5 2.1 33 42-74 13-46 (84)
113 3o70_A PHD finger protein 13; 45.6 2.9 0.0001 28.5 -0.9 51 39-90 15-66 (68)
114 1xwh_A Autoimmune regulator; P 45.6 2.4 8.4E-05 28.5 -1.3 47 42-91 7-55 (66)
115 2pv0_B DNA (cytosine-5)-methyl 45.2 21 0.00073 32.5 4.5 49 40-91 90-148 (386)
116 2ro1_A Transcription intermedi 45.1 4.5 0.00015 33.0 -0.0 46 44-92 3-50 (189)
117 2puy_A PHD finger protein 21A; 42.7 3.3 0.00011 27.2 -1.0 46 42-90 4-51 (60)
118 2ri7_A Nucleosome-remodeling f 42.6 4 0.00014 32.5 -0.7 50 41-91 6-59 (174)
119 1vfy_A Phosphatidylinositol-3- 42.3 13 0.00044 25.3 2.0 31 44-74 12-43 (73)
120 3a1b_A DNA (cytosine-5)-methyl 41.4 22 0.00074 28.4 3.5 48 40-90 76-133 (159)
121 1zbd_B Rabphilin-3A; G protein 39.7 11 0.00038 29.1 1.5 33 41-73 53-87 (134)
122 3v43_A Histone acetyltransfera 39.1 44 0.0015 24.4 4.8 46 43-89 5-62 (112)
123 2zet_C Melanophilin; complex, 38.8 10 0.00034 30.1 1.1 49 42-91 67-117 (153)
124 2dgc_A Protein (GCN4); basic d 38.8 54 0.0018 21.7 4.7 28 214-242 13-40 (63)
125 1dvp_A HRS, hepatocyte growth 38.4 11 0.00039 31.1 1.5 33 43-75 161-194 (220)
126 2fiy_A Protein FDHE homolog; F 38.1 2.7 9.3E-05 37.2 -2.5 47 41-91 180-231 (309)
127 1wem_A Death associated transc 38.0 34 0.0012 23.2 3.7 49 42-91 15-70 (76)
128 2e6r_A Jumonji/ARID domain-con 37.8 3.6 0.00012 29.7 -1.5 50 41-90 14-65 (92)
129 1m3v_A FLIN4, fusion of the LI 37.7 23 0.00079 26.1 3.0 49 43-94 32-81 (122)
130 2xjy_A Rhombotin-2; oncoprotei 37.2 20 0.00069 26.5 2.6 50 42-94 28-78 (131)
131 3mpx_A FYVE, rhogef and PH dom 36.6 7.4 0.00025 35.2 0.0 49 42-90 374-428 (434)
132 1y02_A CARP2, FYVE-ring finger 36.5 13 0.00045 28.2 1.4 48 41-90 17-65 (120)
133 2ffw_A Midline-1; B-BOX, ring 35.3 44 0.0015 22.9 4.0 35 42-76 29-63 (78)
134 2ct7_A Ring finger protein 31; 34.4 3.8 0.00013 29.0 -1.8 31 46-76 28-61 (86)
135 3zyq_A Hepatocyte growth facto 34.1 15 0.00051 30.7 1.5 33 43-75 164-197 (226)
136 1wev_A Riken cDNA 1110020M19; 33.6 4 0.00014 29.2 -1.9 50 43-92 16-73 (88)
137 1wew_A DNA-binding family prot 32.4 47 0.0016 22.7 3.7 51 40-91 13-72 (78)
138 3ask_A E3 ubiquitin-protein li 32.3 8.4 0.00029 32.5 -0.3 46 45-90 176-224 (226)
139 2cup_A Skeletal muscle LIM-pro 32.1 14 0.00049 26.0 1.0 46 42-93 32-77 (101)
140 2kwj_A Zinc finger protein DPF 31.7 7.9 0.00027 28.8 -0.5 43 45-88 3-58 (114)
141 3lqh_A Histone-lysine N-methyl 31.5 19 0.00065 29.2 1.7 50 44-93 3-65 (183)
142 2vpb_A Hpygo1, pygopus homolog 30.7 39 0.0013 22.5 2.9 33 41-73 6-40 (65)
143 2e6s_A E3 ubiquitin-protein li 30.5 10 0.00034 26.4 -0.1 46 45-90 28-76 (77)
144 1x61_A Thyroid receptor intera 30.3 60 0.0021 21.0 3.9 14 64-77 52-65 (72)
145 2yt5_A Metal-response element- 29.3 20 0.00069 23.5 1.3 51 41-91 4-61 (66)
146 1gd2_E Transcription factor PA 29.0 84 0.0029 21.3 4.4 28 214-242 12-39 (70)
147 3shb_A E3 ubiquitin-protein li 28.7 8.4 0.00029 26.9 -0.8 29 62-90 45-76 (77)
148 2g6q_A Inhibitor of growth pro 28.7 5.2 0.00018 26.7 -1.8 47 41-90 9-59 (62)
149 2vnf_A ING 4, P29ING4, inhibit 27.7 5.3 0.00018 26.4 -1.9 47 41-90 8-58 (60)
150 2jne_A Hypothetical protein YF 27.2 3.2 0.00011 30.5 -3.3 44 42-95 31-74 (101)
151 2jmi_A Protein YNG1, ING1 homo 27.0 6.6 0.00023 28.3 -1.7 49 40-90 23-75 (90)
152 3c6w_A P28ING5, inhibitor of g 25.8 4.8 0.00016 26.5 -2.4 47 41-90 7-57 (59)
153 3asl_A E3 ubiquitin-protein li 25.4 14 0.00048 25.1 -0.1 45 46-90 21-68 (70)
154 2cur_A Skeletal muscle LIM-pro 25.1 59 0.002 20.9 3.1 33 43-77 31-63 (69)
155 1g47_A Pinch protein; LIM doma 24.4 49 0.0017 21.8 2.6 42 42-94 10-51 (77)
156 2xb1_A Pygopus homolog 2, B-ce 24.1 36 0.0012 24.9 1.9 51 43-93 3-63 (105)
157 2d8x_A Protein pinch; LIM doma 24.1 39 0.0013 21.9 2.0 32 44-77 32-63 (70)
158 1rut_X Flinc4, fusion protein 23.9 22 0.00077 28.3 0.8 50 42-94 31-81 (188)
159 2rgt_A Fusion of LIM/homeobox 23.5 84 0.0029 24.3 4.2 46 42-94 32-77 (169)
160 2dar_A PDZ and LIM domain prot 23.0 52 0.0018 22.6 2.6 39 43-94 25-63 (90)
161 4gne_A Histone-lysine N-methyl 22.7 24 0.0008 26.2 0.7 47 41-92 13-63 (107)
162 1x4i_A Inhibitor of growth pro 22.6 18 0.00062 24.5 -0.0 46 41-91 4-55 (70)
163 2kpi_A Uncharacterized protein 21.0 38 0.0013 21.9 1.4 11 42-52 9-19 (56)
164 1zfo_A LAsp-1; LIM domain, zin 20.4 26 0.00088 19.7 0.3 26 45-72 5-30 (31)
165 2cor_A Pinch protein; LIM doma 20.3 84 0.0029 21.0 3.1 40 42-94 14-53 (79)
No 1
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.9e-13 Score=94.31 Aligned_cols=53 Identities=25% Similarity=0.571 Sum_probs=45.4
Q ss_pred CCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....+.+.|+||++. +.+|+.+.+|||.||..||..|+. ....||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~--~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGY--LIDATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSC--CSSCEECSSSCCEECHHHHHHHHH--HCSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChH--HHCcCEECCCCCHHHHHHHHHHHH--cCCcCCCcCcccCc
Confidence 345567889999999 788886669999999999999997 46789999999875
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=9.8e-13 Score=92.16 Aligned_cols=54 Identities=26% Similarity=0.548 Sum_probs=43.4
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCccc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFL 95 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~ 95 (247)
......|+||++.|.....+..++|+|.||..||..|+.. ..+||+||.++...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccCc
Confidence 4456689999998544455557899999999999999983 56799999998753
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=99.31 Aligned_cols=52 Identities=27% Similarity=0.523 Sum_probs=44.0
Q ss_pred CCCCcCcccccccCccCCCceEecC-CCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKG-CEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~-CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
...+.+.|+||++. +.+|+ +++ |||+||..||..|+.......||+||.++.
T Consensus 9 ~~~~~~~C~IC~~~--~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDI--MTDAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEE--CSSCE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChh--hcCce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34567899999999 78898 558 999999999999997545579999999973
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.33 E-value=7.6e-13 Score=94.93 Aligned_cols=58 Identities=19% Similarity=0.364 Sum_probs=47.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--ccccccc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSL 101 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~~l 101 (247)
..+.+.|+||++. +.+|+. ++|||+||..||..|+.. +..+||+||.++.. +.+|..+
T Consensus 5 ~~~~~~C~IC~~~--~~~Pv~-~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~n~~l 64 (78)
T 1t1h_A 5 FPEYFRCPISLEL--MKDPVI-VSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHAGLTPNYVL 64 (78)
T ss_dssp CSSSSSCTTTSCC--CSSEEE-ETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEECTTT
T ss_pred CcccCCCCCcccc--ccCCEE-cCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChhhCccCHHH
Confidence 3467899999999 889985 599999999999999973 47889999999864 4444433
No 5
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.33 E-value=9.3e-13 Score=93.94 Aligned_cols=52 Identities=25% Similarity=0.513 Sum_probs=43.6
Q ss_pred CCCCcCcccccccCccCCCceEecC-CCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKG-CEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~-CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
...+.+.|+||++. +.+|+. ++ |||.||..||..|+.......||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~--~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDI--MTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCC--CTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChH--HhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 44567889999999 788985 57 999999999999998534578999999754
No 6
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=4e-13 Score=101.43 Aligned_cols=50 Identities=32% Similarity=0.891 Sum_probs=43.1
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+.+.|+||++. +.+|+.+++|||.||..||..|+.. ....||+||.++..
T Consensus 21 ~~~~C~IC~~~--~~~p~~~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEK--LRDARLCPHCSKLCCFSCIRRWLTE-QRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSB--CSSEEECTTTCCEEEHHHHHHHHHH-TCSBCTTTCCBCCG
T ss_pred CCCCCccCCcc--ccCccccCCCCChhhHHHHHHHHHH-CcCCCCCCCCcCCH
Confidence 45689999999 7889864899999999999999984 23789999999864
No 7
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=2.3e-12 Score=93.11 Aligned_cols=61 Identities=28% Similarity=0.667 Sum_probs=48.6
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcC----CCCCCCCCCcCCcc--ccccccccC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV----RNPTCPQCKHPFEF--LHVHRSLDG 103 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~----~~~~CP~CR~~~~~--~~~~~~l~~ 103 (247)
..+.+.|+||++. +.+|+ +++|||.||..||..|+... ....||+||.++.. +.++..+.+
T Consensus 16 ~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 16 IKEEVTCPICLEL--LKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCTTTSCTTTCSC--CSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred CccCCCCcCCChh--hCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 4567789999999 78888 56999999999999999842 26789999999875 555555443
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=2.1e-12 Score=92.58 Aligned_cols=53 Identities=25% Similarity=0.683 Sum_probs=43.7
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
......|+||++.|.....+.+++|+|.||..||..|+. ....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH--cCCcCcCcCCccCC
Confidence 445678999999854445555679999999999999997 46799999999875
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.31 E-value=7.3e-13 Score=94.96 Aligned_cols=62 Identities=27% Similarity=0.592 Sum_probs=48.2
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc-----CCCCCCCCCCcCCcc--ccccccccC
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-----VRNPTCPQCKHPFEF--LHVHRSLDG 103 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~-----~~~~~CP~CR~~~~~--~~~~~~l~~ 103 (247)
...+.+.|+||++. +.+|+ +++|||.||..||..|+.. .....||+||.++.. +.+|..+.+
T Consensus 8 ~~~~~~~C~IC~~~--~~~p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 8 NVQEEVTCPICLEL--LTEPL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCEETTTTEE--CSSCC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hcccCCCCcCCCcc--cCCee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 34567889999999 77888 4699999999999999874 126789999999864 455554443
No 10
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.30 E-value=8.1e-13 Score=105.32 Aligned_cols=49 Identities=29% Similarity=0.777 Sum_probs=42.7
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCccc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFL 95 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~ 95 (247)
+.+.|+||++. +.+|+ +++|||.||..||..|+. ....||+||.++...
T Consensus 52 ~~~~C~iC~~~--~~~~~-~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEY--FIEAV-TLNCAHSFCSYCINEWMK--RKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSB--CSSEE-EETTSCEEEHHHHHHHTT--TCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcc--cCCce-ECCCCCCccHHHHHHHHH--cCCcCCCCCCcCCCC
Confidence 45689999999 78888 569999999999999997 578899999998753
No 11
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.5e-12 Score=92.17 Aligned_cols=62 Identities=21% Similarity=0.577 Sum_probs=48.5
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc----CCCCCCCCCCcCCcc--ccccccccC
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY----VRNPTCPQCKHPFEF--LHVHRSLDG 103 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~----~~~~~CP~CR~~~~~--~~~~~~l~~ 103 (247)
...+.+.|+||++. +.+|+ +++|||.||..||..|+.. .....||+||.++.. +.++..+.+
T Consensus 15 ~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 15 NVKEEVTCPICLEL--LTQPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCTTTCSC--CSSCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HccCCCCCCCCCcc--cCCce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 34566789999999 77887 5699999999999999874 237889999999875 455554443
No 12
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.1e-12 Score=90.79 Aligned_cols=53 Identities=26% Similarity=0.696 Sum_probs=43.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
......|+||++.|.....+.+++|+|.||..||..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCccccc
Confidence 4456789999999544455556799999999999999984 5689999999865
No 13
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=96.47 Aligned_cols=51 Identities=27% Similarity=0.673 Sum_probs=41.8
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
.....|+||++.|.....+..++|+|.||..||..|+. ...+||+||.++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH--cCCcCcCcCccCC
Confidence 45668999999854444455679999999999999997 5679999999875
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.9e-12 Score=92.69 Aligned_cols=50 Identities=28% Similarity=0.624 Sum_probs=43.4
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
.....+.|+||++. +.+|+ +++|||.||..||..|+. ....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQA--FQNPV-VTKCRHYFCESCALEHFR--ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSB--CCSEE-ECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCch--hcCee-EccCCCHhHHHHHHHHHH--CCCcCCCcCcccc
Confidence 34567889999999 78888 579999999999999997 4778999999986
No 15
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=98.53 Aligned_cols=56 Identities=29% Similarity=0.670 Sum_probs=45.7
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--ccccccc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSL 101 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~~l 101 (247)
+.+.|+||++. +.+|+.+.+|||.||..||..|+. ....||+||.++.. +.+|..+
T Consensus 21 ~~~~C~IC~~~--~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~l~~n~~l 78 (99)
T 2y43_A 21 DLLRCGICFEY--FNIAMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTEPDLKNNRIL 78 (99)
T ss_dssp HHTBCTTTCSB--CSSEEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCEECHHH
T ss_pred CCCCcccCChh--hCCcCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCChhhCCcCHHH
Confidence 45689999999 788886669999999999999998 56899999999875 4444433
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.2e-12 Score=89.66 Aligned_cols=53 Identities=30% Similarity=0.613 Sum_probs=43.7
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc-CCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-VRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~-~~~~~CP~CR~~~~~ 94 (247)
...+.+.|+||++. +.+|+. ++|||.||..||..|+.. .....||+||.++..
T Consensus 16 ~~~~~~~C~IC~~~--~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDI--LQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSB--CSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcc--cCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34567889999999 778884 599999999999999962 246689999998753
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=91.03 Aligned_cols=50 Identities=22% Similarity=0.496 Sum_probs=43.0
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+.+.|+||++. +.+++ +++|+|.||..||..|+. ....||+||.++..
T Consensus 12 ~~~~~~C~IC~~~--~~~~~-~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQT--CVHPV-SLPCKHVFCYLCVKGASW--LGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSB--CSSEE-EETTTEEEEHHHHHHCTT--CSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcc--cCCCE-EccCCCHHHHHHHHHHHH--CCCcCcCcCchhCH
Confidence 4556789999999 78887 459999999999999997 46899999999864
No 18
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.27 E-value=2.7e-12 Score=85.81 Aligned_cols=51 Identities=31% Similarity=0.699 Sum_probs=40.3
Q ss_pred CCcCcccccccCccCCCceEecC-CCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 41 NHGGVCAICLDKTVLQETALVKG-CEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~-CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
++...|+||++.|...+.+..++ |+|.||..||..|+. ...+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 35567999999854433344556 999999999999997 5778999999864
No 19
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=102.55 Aligned_cols=50 Identities=20% Similarity=0.470 Sum_probs=42.8
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.+.|+||++. +.+|+ +++|||+||..||..|+.. ....||+||.++..
T Consensus 50 ~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQEL--VFRPI-TTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSB--CSSEE-ECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChH--HcCcE-EeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 345789999999 78898 4599999999999999973 45699999999865
No 20
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.26 E-value=3.1e-12 Score=93.96 Aligned_cols=58 Identities=12% Similarity=-0.023 Sum_probs=47.8
Q ss_pred CCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--cccccc
Q 025884 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRS 100 (247)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~~ 100 (247)
....+.+.||||+++ +.+|| +++|||+||..||..|+. ...+||+|+.++.. +.+|..
T Consensus 9 ~~~p~~~~CpI~~~~--m~dPV-~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~l~pn~~ 68 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTL--MTDPV-RLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESMLEPVPE 68 (85)
T ss_dssp TTCCTTTBCTTTCSB--CSSEE-ECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGGCEECHH
T ss_pred hcCchheECcccCch--hcCCe-ECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHhcchHHH
Confidence 344578999999999 99999 558999999999999998 36789999999865 444443
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=88.41 Aligned_cols=52 Identities=21% Similarity=0.492 Sum_probs=43.5
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...+.+.|+||++. +.+|+. ++|||.||..||..|+. .....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~--~~~p~~-~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLV--LCSPKQ-TECGHRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCE--ESSCCC-CSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChH--hcCeeE-CCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 34567889999999 778884 69999999999999996 256789999998763
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=4e-12 Score=88.68 Aligned_cols=49 Identities=43% Similarity=0.986 Sum_probs=42.2
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....|+||++. +.+++.+++|||.||..||..|+. ....||+||.++..
T Consensus 4 ~~~~C~IC~~~--~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLED--PSNYSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSC--CCSCEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCCC
T ss_pred CCCCCeeCCcc--ccCCcEecCCCCeeHHHHHHHHHh--CcCcCcCCChhhHh
Confidence 45679999999 677766889999999999999998 46789999999864
No 23
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.6e-12 Score=91.61 Aligned_cols=52 Identities=25% Similarity=0.627 Sum_probs=42.0
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+...|+||++.|.....+..++|+|.||..||..|+. ....||+||.++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~--~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK--ANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH--HCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH--cCCcCcCcCCcCCC
Confidence 34567999999854444556789999999999999998 46789999998753
No 24
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=5e-12 Score=96.36 Aligned_cols=49 Identities=24% Similarity=0.674 Sum_probs=43.1
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+.+.|+||++. +.+|+.+.+|||.||..||..|+. ....||+||.++..
T Consensus 14 ~~~~C~IC~~~--~~~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGY--FIDATTIIECLHSFCKTCIVRYLE--TSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSB--CSSEEEETTTCCEEEHHHHHHHHT--SCSBCTTTCCBSCS
T ss_pred CcCCCccCChH--HhCcCEeCCCCChhhHHHHHHHHH--hCCcCcCCCccccc
Confidence 45689999999 788986669999999999999998 46899999999874
No 25
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.23 E-value=3.1e-12 Score=89.81 Aligned_cols=51 Identities=25% Similarity=0.701 Sum_probs=42.0
Q ss_pred CCCcCcccccccCccCCCc------eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p------v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+.+.|+||++. +.++ +.+++|||.||..||..|+. ....||+||.++..
T Consensus 7 ~~~~~~C~IC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCB--HHHHHTTTCCEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChh--hhccccccCCeEeCCCCChHhHHHHHHHHH--cCCCCCCCCCccCh
Confidence 4456789999998 4444 24779999999999999998 45799999999875
No 26
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.23 E-value=5.7e-12 Score=95.44 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=45.0
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...+.+.||||+++ +.+|| +++|||+||..||..|+. ...+||+|+.++..
T Consensus 25 ~~p~~~~CpI~~~~--m~dPV-~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTL--MTDPV-RLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSB--CSSEE-EETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCc--ccCCe-ECCCCCEEchHHHHHHHH--cCCCCCCCCCCCCh
Confidence 44678999999999 99999 558999999999999997 46899999999875
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=90.63 Aligned_cols=53 Identities=21% Similarity=0.522 Sum_probs=42.8
Q ss_pred CCCCcCcccccccCccCCC----ceEecCCCChhhHHHHHHHHhcC-CCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQE----TALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~----pv~~~~CgH~FC~~Ci~~w~~~~-~~~~CP~CR~~~~~ 94 (247)
...+.+.|+||++. +.+ |+ +++|||.||..||..|+... ....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~--~~~~~~~~~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMES--FTEEQLRPK-LLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCB--CCTTSSCEE-ECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCcc--ccccCCCeE-ECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 44567789999999 444 66 66999999999999999842 24789999998764
No 28
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.3e-12 Score=88.36 Aligned_cols=51 Identities=25% Similarity=0.681 Sum_probs=41.3
Q ss_pred CCCCcCcccccccCccCCCc------eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 39 FGNHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~p------v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
...+.+.|+||++. +.++ +.+++|||.||..||..|+. ....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCC--HHHHTTTTCCEEECSSSCEEEHHHHHHHHH--HCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCcc--ccccccccCCeEeCCCCChhcHHHHHHHHH--cCCCCCCCCCccC
Confidence 34566789999998 4443 24679999999999999998 4678999999875
No 29
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.22 E-value=1.1e-12 Score=106.37 Aligned_cols=50 Identities=22% Similarity=0.580 Sum_probs=43.0
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.+.|+||++. +.+|+. ++|||.||..||..|+.. ....||+||.++..
T Consensus 76 ~~~~~C~IC~~~--~~~pv~-~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQEL--VYQPVT-TECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSB--CSSEEE-CTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCEeecCChh--hcCCEE-cCCCCchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 346789999999 888984 699999999999999983 45689999999874
No 30
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.21 E-value=9.2e-12 Score=93.96 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=44.8
Q ss_pred CCCCcCcccccccCccCCCceEecCCC-ChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCE-HAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~Cg-H~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...+.+.||||+++ +.+|| +++|| |+||..||..|+. ...+||+|+.++..
T Consensus 18 ~~p~~~~CpI~~~~--m~dPV-~~~cG~htf~r~cI~~~l~--~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTL--MCDPV-VLPSSRVTVDRSTIARHLL--SDQTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSB--CSSEE-ECTTTCCEEEHHHHHHHTT--TSCBCTTTCSBCCT
T ss_pred cCcHhcCCcCcccc--ccCCe-ECCCCCeEECHHHHHHHHH--hCCCCCCCCCCCCh
Confidence 34568899999999 99999 56999 9999999999997 46789999999875
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=84.47 Aligned_cols=47 Identities=32% Similarity=0.687 Sum_probs=39.2
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc-CCCCCCCCC
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-VRNPTCPQC 88 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~-~~~~~CP~C 88 (247)
...+.+.|+||++. +.+|+. ++|||.||..||..|+.. .....||+|
T Consensus 16 ~~~~~~~C~IC~~~--~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDI--LQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSB--CSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCch--hCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45567889999999 788884 599999999999999973 245689998
No 32
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.19 E-value=1e-11 Score=82.87 Aligned_cols=50 Identities=28% Similarity=0.507 Sum_probs=40.0
Q ss_pred CcCcccccccCccC-CCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVL-QETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~-~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
....|+||++.|.. ..++.+++|+|.||..||..|+.. ...||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 45679999998422 234557899999999999999984 488999999864
No 33
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.18 E-value=5.6e-12 Score=86.47 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=40.5
Q ss_pred CcCcccccccCccCCCc------eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~p------v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+.+.|+||++. +.++ +.+++|||.||..||..|+. ....||+||.++..
T Consensus 2 ~~~~C~IC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCB--HHHHHHTTCCEEEETTSCEEEHHHHHHHHH--HCSBCTTTCCBCTT
T ss_pred CCCCCCccChh--hhCccccCCCEEeCCCCCchhHHHHHHHHH--cCCCCCCCCccCCc
Confidence 45689999998 4443 24679999999999999998 46799999999875
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.3e-11 Score=85.51 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=40.0
Q ss_pred CcCccccccc-CccCCCce---EecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLD-KTVLQETA---LVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~-~~~~~~pv---~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+.+.|+||++ . +.+|. .+++|||.||..||..|+.. ....||+||.++..
T Consensus 2 ~~~~C~IC~~~~--~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTK--YRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHH--HHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCc--cCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 3567999999 7 44442 35799999999999999763 46789999999865
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.1e-11 Score=81.27 Aligned_cols=47 Identities=34% Similarity=0.863 Sum_probs=38.8
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc-CCCCCCCCC
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY-VRNPTCPQC 88 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~-~~~~~CP~C 88 (247)
...+.+.|+||++. +.+|+ +++|||.||..||..|+.. .....||+|
T Consensus 11 ~~~~~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEY--LKEPV-IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCB--CSSCC-CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcc--cCccE-eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567789999999 77887 5699999999999999752 356789998
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=2.2e-11 Score=99.58 Aligned_cols=51 Identities=35% Similarity=0.773 Sum_probs=44.0
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.+.|+||++. +.+|+.+.+|||.||..||..|+.. ....||+||.++..
T Consensus 52 ~~~~~C~IC~~~--~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDM--LKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSB--CSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCCcccChH--hhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 456789999999 7889866799999999999999983 47889999999853
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.14 E-value=4.4e-11 Score=91.68 Aligned_cols=53 Identities=25% Similarity=0.546 Sum_probs=39.9
Q ss_pred cCcccccccCccCC---------------CceEecCCCChhhHHHHHHHHhc---CCCCCCCCCCcCCccc
Q 025884 43 GGVCAICLDKTVLQ---------------ETALVKGCEHAYCATCILRWASY---VRNPTCPQCKHPFEFL 95 (247)
Q Consensus 43 ~~~C~ICl~~~~~~---------------~pv~~~~CgH~FC~~Ci~~w~~~---~~~~~CP~CR~~~~~~ 95 (247)
...|+||++.|... ..+.+++|+|.||..||..|+.. ....+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34799999984221 12236799999999999999953 2467899999988753
No 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-11 Score=86.31 Aligned_cols=50 Identities=28% Similarity=0.793 Sum_probs=42.1
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...+.+.|+||++. +.+ + +++|+|.||..||..|+. ....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~--~~~-~-~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDG--RAD-L-ILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCS--CCS-E-EETTTEEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcC--ccC-c-ccCCCCcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 34556789999998 555 4 679999999999999997 67899999999875
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=4.4e-11 Score=91.14 Aligned_cols=49 Identities=29% Similarity=0.719 Sum_probs=41.1
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcC-CCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV-RNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~-~~~~CP~CR~~~~~ 94 (247)
.+.|+||++. +.+|+ +++|||.||..||..|+... ....||+||.++..
T Consensus 21 ~~~C~IC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLEL--IKEPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCC--CSSCC-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChh--hcCeE-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4579999999 78888 46999999999999999742 23589999999875
No 40
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.5e-11 Score=86.76 Aligned_cols=51 Identities=24% Similarity=0.659 Sum_probs=38.7
Q ss_pred CcCcccccccCccC------------CCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVL------------QETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~------------~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+...|+||++.|.. ..++.+.+|+|.||..||..|+. ...+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK--QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT--TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH--hCCCCCCcCCCcch
Confidence 34569999998421 11444556999999999999998 46799999998764
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=8.2e-12 Score=96.14 Aligned_cols=51 Identities=24% Similarity=0.572 Sum_probs=43.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+.+.|+||++. +.+|+ +++|||+||..||..|+.. ....||+||.++..
T Consensus 12 ~~~~~~C~iC~~~--~~~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEI--LVEPV-TLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSB--CSSCE-ECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcc--cCcee-EcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 3446789999999 78898 4599999999999999873 46789999999864
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.11 E-value=6.5e-11 Score=85.67 Aligned_cols=53 Identities=21% Similarity=0.568 Sum_probs=41.2
Q ss_pred CCCcCcccccccCccCCCceEecC--CCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKG--CEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~--CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+.++|+||++.+...++. +++ |||.||..||..|+.. ....||.||.++..
T Consensus 8 ~~~~~~CpICle~~~~~d~~-~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDIN-FFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTT-CCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCcccccc-ccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 35667899999985334444 445 9999999999998753 56789999999865
No 43
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=4.1e-11 Score=104.51 Aligned_cols=53 Identities=11% Similarity=0.005 Sum_probs=44.8
Q ss_pred CCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
......+.||||+++ +.+|| +++|||+||..||..|+.. +..+||+|+.++..
T Consensus 203 ~~~~~~~~c~i~~~~--~~dPv-~~~~gh~f~~~~i~~~~~~-~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 203 RDIPDYLCGKISFEL--MREPC-ITPSGITYDRKDIEEHLQR-VGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCCSTTBCTTTCSB--CSSEE-ECSSCCEEETTHHHHHHHH-TCSSCTTTCCCCCG
T ss_pred CCCCcccCCcCcCCH--hcCCe-ECCCCCEECHHHHHHHHHH-CCCCCcCCCCCCch
Confidence 345578899999999 99999 5699999999999999974 34559999999864
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.1e-11 Score=96.00 Aligned_cols=57 Identities=32% Similarity=0.725 Sum_probs=44.9
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--ccccccccCC
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSLDGS 104 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~~l~~~ 104 (247)
+.+.|+||++. +.+|+.+.+|||+||..||..|+. ..||+||.++.. +.+|..+.++
T Consensus 21 ~~~~C~IC~~~--~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~~~~~n~~l~~l 79 (117)
T 1jm7_B 21 KLLRCSRCTNI--LREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQDLKINRQLDSM 79 (117)
T ss_dssp HTTSCSSSCSC--CSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCSSCCCCHHHHHH
T ss_pred hCCCCCCCChH--hhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccccccccHHHHHH
Confidence 45789999999 788984449999999999999975 679999999854 4444444333
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=5.3e-11 Score=92.16 Aligned_cols=53 Identities=25% Similarity=0.456 Sum_probs=44.4
Q ss_pred CCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 38 GFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 38 ~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....+.+.|+||++. +.+|+. ++|||.||..||..|+.. ....||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~--~~~p~~-~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMA--LREAVQ-TPCGHRFCKACIIKSIRD-AGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSB--CSSEEE-CTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChh--hcCeEE-CCcCChhhHHHHHHHHhh-CCCCCCCCCCCcCH
Confidence 345667899999999 788884 599999999999999974 33489999999875
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.08 E-value=4.2e-11 Score=92.23 Aligned_cols=49 Identities=31% Similarity=0.705 Sum_probs=42.5
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+.+.|+||++. +.+|+. ++|||.||..||..|+.. ....||+||.++..
T Consensus 22 ~~~~C~IC~~~--~~~p~~-~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHI--LADPVE-TSCKHLFCRICILRCLKV-MGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSB--CSSEEE-CTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcH--hcCcEE-cCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCH
Confidence 35689999999 788885 699999999999999984 36789999999875
No 47
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.05 E-value=1.4e-10 Score=88.78 Aligned_cols=50 Identities=32% Similarity=0.626 Sum_probs=39.8
Q ss_pred cCcccccccCccCC---------------CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQ---------------ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~---------------~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...|+||++.|... .++.+++|+|.||..||..|+. ...+||+||.++..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--cCCcCcCCCCccee
Confidence 45699999985322 1255679999999999999998 57899999998753
No 48
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=9.3e-11 Score=87.52 Aligned_cols=57 Identities=26% Similarity=0.519 Sum_probs=43.9
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcC----CCCCCCC--CCcC-Ccc--ccccc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYV----RNPTCPQ--CKHP-FEF--LHVHR 99 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~----~~~~CP~--CR~~-~~~--~~~~~ 99 (247)
...+.||||+++ +.+||.+..|||+||..||..|+... ...+||+ |+.. +.. +.+|.
T Consensus 5 ~~~~~CPI~~~~--~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 5 SSGFTCPITKEE--MKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp SSCCBCTTTCSB--CSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CcEeECcCcCch--hcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 467899999999 89999553499999999999999732 2468999 9865 432 44443
No 49
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.03 E-value=9.5e-11 Score=97.59 Aligned_cols=57 Identities=12% Similarity=0.000 Sum_probs=46.8
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc--ccccc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHR 99 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~ 99 (247)
...+.+.||||+++ +.+|| +++|||+||..||..|+.. ...+||+|+.++.. +.+|.
T Consensus 102 ~ip~~f~CPI~~el--m~DPV-~~~~Ghtfer~~I~~~l~~-~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 102 EIPDYLCGKISFEL--MREPC-ITPSGITYDRKDIEEHLQR-VGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCCGGGBCTTTCSB--CSSEE-ECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGCEECH
T ss_pred CCcHhhcccCcccc--CCCCe-ECCCCCEECHHHHHHHHHh-CCCCCCCCcCCCChhhCcchH
Confidence 34678999999999 89999 5599999999999999974 23479999999875 44444
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=9.8e-11 Score=91.18 Aligned_cols=50 Identities=26% Similarity=0.726 Sum_probs=42.0
Q ss_pred CCcCcccccccCccCCCc------eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p------v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.+.|+||++. +.+| +.+++|||.||..||..|+. ....||+||.++..
T Consensus 5 ~~~~~C~IC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCB--HHHHHHTTCCEEEETTCCEEEHHHHHHHHT--TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChh--hhCccccccCeEecCCCChhhHHHHHHHHH--hCCCCCCCCCcCcc
Confidence 456789999999 5555 23679999999999999998 56799999999875
No 51
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.00 E-value=9.4e-11 Score=102.61 Aligned_cols=64 Identities=16% Similarity=0.350 Sum_probs=51.2
Q ss_pred ccCCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCC--CCcCCcc--ccccccc
Q 025884 36 EMGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQ--CKHPFEF--LHVHRSL 101 (247)
Q Consensus 36 ~~~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~--CR~~~~~--~~~~~~l 101 (247)
........+.||||+++ +.+||+...|||+||..||..|+...+...||+ |+..+.. +.++..+
T Consensus 174 ~v~~~~~el~CPIcl~~--f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L 241 (267)
T 3htk_C 174 QIEGGKIELTCPITCKP--YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241 (267)
T ss_dssp CCCSSBCCSBCTTTSSB--CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHH
T ss_pred eecCCceeeECcCccCc--ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHH
Confidence 34456778999999999 899997679999999999999987434568999 9998764 5555443
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.99 E-value=6.8e-11 Score=94.80 Aligned_cols=51 Identities=24% Similarity=0.480 Sum_probs=43.0
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
...+.+.|+||++. +.+|++ ++|||.||..||..|+.. ....||+||.++.
T Consensus 27 ~l~~~~~C~IC~~~--~~~pv~-~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNV--LRRPFQ-AQCGHRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSB--CSSEEE-CTTSCEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChh--hcCcEE-CCCCCccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 34567889999999 889985 599999999999999973 4568999999764
No 53
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=7.1e-10 Score=80.57 Aligned_cols=54 Identities=20% Similarity=0.511 Sum_probs=43.3
Q ss_pred CCCcCcccccccCccCCCceEecCCC-----ChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCE-----HAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~Cg-----H~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+...|.||++.+...+++ ++||. |.||..||.+|+...+..+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34456799999875445666 67996 99999999999985445799999999864
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=2.2e-10 Score=77.34 Aligned_cols=46 Identities=22% Similarity=0.553 Sum_probs=38.4
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.+.|+||++. +.+|+ +++|||.||..||..| ...||+||.++..
T Consensus 4 ~~~~~C~IC~~~--~~~p~-~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAE--AKCPK-LLPCLHTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSS--CBCCS-CSTTSCCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCc--cCCeE-EcCCCCcccHHHHccC-----CCCCCcCCcEeec
Confidence 456789999999 77887 6699999999998763 5679999998763
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.91 E-value=2.4e-10 Score=81.48 Aligned_cols=44 Identities=27% Similarity=0.686 Sum_probs=37.8
Q ss_pred CcCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+.+.|+||++. +.+++ ++||||. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~--~~~~~-~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDR--NIAIV-FVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSS--BCCEE-EETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCC--CCCEE-EcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 34579999999 78888 5599999 999999887 569999999875
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.90 E-value=8e-10 Score=90.54 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=45.4
Q ss_pred cCCCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 37 MGFGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+....+.+.|+||++. +.+|++ ++|||+||..||..|+.. ....||+||.++..
T Consensus 12 ~~~~~~~~~C~IC~~~--~~~pv~-~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 12 DPPLESKYECPICLMA--LREAVQ-TPCGHRFCKACIIKSIRD-AGHKCPVDNEILLE 65 (170)
T ss_dssp SSCCCGGGBCTTTCSB--CSSEEE-CTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCCCChh--hcCcEE-CCCCCHHHHHHHHHHHHh-CCCCCCCCccCcch
Confidence 3456678899999999 888985 599999999999999974 34589999999865
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=7.8e-10 Score=76.74 Aligned_cols=49 Identities=29% Similarity=0.681 Sum_probs=40.6
Q ss_pred CcCcccccccCccCCCceEe-cCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALV-KGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~-~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+...|+||++. ..+++.+ +||||. ||..|+..|.. ....||+||.++..
T Consensus 7 ~~~~C~IC~~~--~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGR--PKNGCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSS--CSCEEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCC--CCCEEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchhc
Confidence 44579999998 7777732 399999 89999999987 46789999999865
No 58
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.84 E-value=3.9e-10 Score=87.70 Aligned_cols=50 Identities=32% Similarity=0.626 Sum_probs=0.4
Q ss_pred cCcccccccCccCCC---------------ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQE---------------TALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~---------------pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...|+||++.|.... ++..++|+|.||..||..|+. ...+||+||.++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~--~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEF 112 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH--cCCcCCCCCCeeee
Confidence 347999999853211 233469999999999999998 47889999998753
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.84 E-value=1.7e-09 Score=99.70 Aligned_cols=49 Identities=22% Similarity=0.722 Sum_probs=42.1
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....|+||++. ..+|+ +++|||.||..|+..|+.. ....||+||.++..
T Consensus 331 ~~~~C~ICle~--~~~pv-~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEN--DKDVK-IEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSS--BCCEE-EETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCCccCcC--CCCeE-EeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 34789999999 77887 5699999999999999973 46789999999875
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.84 E-value=1.3e-09 Score=75.43 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=39.8
Q ss_pred CcCcccccccCccCCCceE-ecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETAL-VKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~-~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....|+||++. ..+++. ..||||. ||..|+..|.. ....||+||.++..
T Consensus 6 ~~~~C~IC~~~--~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKR--PRDGNIIHGRTGHLVTCFHCARRLKK--AGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSS--BSCEEEEETTEEEEEECHHHHHHHHH--TTCBCTTTCCBCCE
T ss_pred cCCCCcccCCc--CCCeEEEecCCCCHhHHHHHHHHHHH--hCCcCCCcCchhhc
Confidence 34579999998 667652 2499998 99999999887 45789999999865
No 61
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=1.3e-09 Score=84.71 Aligned_cols=51 Identities=27% Similarity=0.755 Sum_probs=41.8
Q ss_pred CCCcCcccccccCccCCCc------eEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQET------ALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~p------v~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+...|+||++. +.++ ...++|||.||..||.+|+. ...+||+||.++..
T Consensus 69 ~~~~~~C~iC~~~--~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 69 GSGTVSCPICMDG--YSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 125 (133)
T ss_dssp SSSSCBCTTTCCB--HHHHHHTTCCEEEETTSBEEEHHHHHHHHH--HCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCCc--cccccccCcceEeCCCCChhhHHHHHHHHH--cCCCCCCCCCcCCh
Confidence 4566789999998 4443 23679999999999999998 46799999999875
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=3e-09 Score=78.98 Aligned_cols=54 Identities=17% Similarity=0.623 Sum_probs=38.8
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc----C--CCCCCCC--CCcC--Ccc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY----V--RNPTCPQ--CKHP--FEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~----~--~~~~CP~--CR~~--~~~ 94 (247)
.+.++|+||++.+.....+.+.+|||.||..||..|+.. + ....||. |+.. +..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 356789999998433333333489999999999998763 1 2357999 9998 543
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=9.6e-09 Score=73.51 Aligned_cols=52 Identities=17% Similarity=0.503 Sum_probs=40.3
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.....|+||+++| ..-..-..|+|.||..||.+|+......+||+|+.++..
T Consensus 13 ~~i~~C~IC~~~i--~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLL--IQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBC--SSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHc--ccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3445799999995 222334489999999999999985445899999998764
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2.2e-09 Score=76.54 Aligned_cols=43 Identities=28% Similarity=0.702 Sum_probs=36.4
Q ss_pred cCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...|+||++. +.+++ ++||||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~--~~~~~-~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR--NIAIV-FVPCGHLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS--CCCBC-CSSSCCCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCC--CCCEE-EecCCCHHHHHHHhhC------CCCCccCCceecC
Confidence 4579999999 78888 5699999 99999954 3679999999865
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.71 E-value=2.4e-09 Score=77.37 Aligned_cols=43 Identities=23% Similarity=0.746 Sum_probs=36.6
Q ss_pred cCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...|+||++. ..+++ ++||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~--~~~~v-~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEE--EINST-FCPCGHTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSS--BCCEE-EETTCBCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred CCEeEEeCcc--cCcEE-EECCCCHHHHHHHHHhc------CcCCCCCchhhC
Confidence 3479999998 78887 5699999 999999765 369999999876
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=3.1e-08 Score=69.48 Aligned_cols=46 Identities=20% Similarity=0.579 Sum_probs=38.4
Q ss_pred CCCcCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
..+...|.||++. ..+++ ++||||. ||..|+.. ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~--~~~~v-~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNG--TVNWV-LLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSS--CCCCE-ETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcC--CCCEE-EECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 4456789999998 77777 6799999 99999974 3679999999875
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.53 E-value=3.4e-08 Score=67.94 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=40.8
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+.|+||++. +.+|+...+|||+|+..||..|+.. ..+||+++.++..
T Consensus 3 ~~~CpIs~~~--m~dPV~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKV--PRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSC--CSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCG
T ss_pred eEEecCCCCC--CCCCEEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCCh
Confidence 4789999999 8899944499999999999999973 4569999999865
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=2.1e-08 Score=91.40 Aligned_cols=45 Identities=24% Similarity=0.629 Sum_probs=38.6
Q ss_pred CCcCcccccccCccCCCceEecCCCCh-hhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHA-YCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~-FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.+...|+||++. +.+|+ ++||||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~--~~~~v-~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDK--EVSVV-FIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSS--BCCEE-EETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCc--CCceE-EcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 345789999999 78888 5599999 999999877 569999999875
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.40 E-value=1.6e-07 Score=64.31 Aligned_cols=49 Identities=24% Similarity=0.635 Sum_probs=39.5
Q ss_pred CcCcccccccCccCCCceEecCCCC-----hhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEH-----AYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH-----~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
+...|.||++. ..++. +.||.+ .||..||.+|+..++..+||+|+.++.
T Consensus 5 ~~~~CrIC~~~--~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE--LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE--CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC--CCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45579999997 55665 678654 899999999998556789999999875
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.21 E-value=9.6e-07 Score=66.13 Aligned_cols=48 Identities=21% Similarity=0.620 Sum_probs=39.5
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCccc
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFL 95 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~ 95 (247)
.|++|--. +..-..++||.|.||.+|+..|... ...+||.|+.++..+
T Consensus 3 fC~~C~~P--i~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLP--IKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSB--CSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSEE
T ss_pred ecCccCCC--eEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeeeee
Confidence 48888877 4555667899999999999999863 678999999998763
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.06 E-value=6.1e-07 Score=81.26 Aligned_cols=53 Identities=23% Similarity=0.496 Sum_probs=37.4
Q ss_pred CCcCcccccccCccCCC--ceE---ecCCCChhhHHHHHHHHhcCCC---------CCCCCCCcCCc
Q 025884 41 NHGGVCAICLDKTVLQE--TAL---VKGCEHAYCATCILRWASYVRN---------PTCPQCKHPFE 93 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~--pv~---~~~CgH~FC~~Ci~~w~~~~~~---------~~CP~CR~~~~ 93 (247)
.....|+||+..+.... |.. ...|+|.||..||..|+..... ..||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45567999999842211 211 2489999999999999973111 46999999875
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.55 E-value=6.3e-05 Score=64.99 Aligned_cols=51 Identities=18% Similarity=0.499 Sum_probs=40.0
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....|.||.+++ ..-..-..|+|.||..|+..|+.......||.|+.++..
T Consensus 179 ~i~~C~iC~~iv--~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLL--IQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBC--SSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHH--hCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 356799999983 333334459999999999999985456799999998765
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.71 E-value=0.0047 Score=45.48 Aligned_cols=34 Identities=24% Similarity=0.592 Sum_probs=25.7
Q ss_pred CcCcccccccCccCCCceEe-cCCCChhhHHHHHHH
Q 025884 42 HGGVCAICLDKTVLQETALV-KGCEHAYCATCILRW 76 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~-~~CgH~FC~~Ci~~w 76 (247)
+++.|+||.+.+ ...++.. +.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~-~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDP-AQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSS-CCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCC-CCCceEECCcCChHHhHHHCHHH
Confidence 356899999742 3455532 799999999999984
No 74
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.0056 Score=55.87 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=39.2
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHH--HHHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATC--ILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~C--i~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.-.+.|||=+.. +..|+....|.|.-|++- +..+........||+|...+..
T Consensus 247 ~vSL~CPlS~~r--i~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 247 IMSLQCPISYTR--MKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp EEESBCTTTSSB--CSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred EEeecCCCcccc--ccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 456889998888 889999999999977664 3333333467889999988754
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.04 E-value=0.021 Score=42.10 Aligned_cols=45 Identities=29% Similarity=0.605 Sum_probs=35.5
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+.|..|... .. ..+.-..|.+|..||...+. .+..||+|..++..
T Consensus 29 ~nCKsCWf~--~k--~LV~C~dHYLCl~CLtlmL~--~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 29 QFCKSCWFE--NK--GLVECNNHYLCLNCLTLLLS--VSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCSSCSC--CS--SEEECSSCEEEHHHHHHTCS--SSSEETTTTEECCC
T ss_pred ccChhhccc--cC--CeeeecchhhHHHHHHHHHh--hccCCcccCCcCCc
Confidence 459999876 33 33546678999999999887 67889999999875
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.76 E-value=0.11 Score=52.77 Aligned_cols=60 Identities=10% Similarity=0.084 Sum_probs=48.9
Q ss_pred cCCCCCcCcccccccCccCCCceEecCCC-ChhhHHHHHHHHhcCCCCCCCCCCcCCcc--ccccccc
Q 025884 37 MGFGNHGGVCAICLDKTVLQETALVKGCE-HAYCATCILRWASYVRNPTCPQCKHPFEF--LHVHRSL 101 (247)
Q Consensus 37 ~~~~~~~~~C~ICl~~~~~~~pv~~~~Cg-H~FC~~Ci~~w~~~~~~~~CP~CR~~~~~--~~~~~~l 101 (247)
....-+.+.|||-+++ +.+|| ++|-| ++|=..+|.+|+. ...+||.-|.++.. +.+|..+
T Consensus 885 ~~~iP~~F~cPIs~~l--M~DPV-ilpsG~~TydR~~I~~wl~--~~~tdP~Tr~~L~~~~liPN~~L 947 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTI--MKDPV-ILPASKMNIDRSTIKAHLL--SDSTDPFNRMPLKLEDVTPNEEL 947 (968)
T ss_dssp HCCSCGGGBCTTTCSB--CSSEE-ECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCEECHHH
T ss_pred ccCCcHHhCCcchhhH--HhCCe-EcCCCCEEECHHHHHHHHh--cCCCCCCCCCCCCcccccccHHH
Confidence 3456678999999999 99999 56887 6999999999998 46799999999875 4555433
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=87.74 E-value=0.56 Score=42.54 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=38.8
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHH--HHHHhcCCCCCCCCCCcCCcc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCI--LRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci--~~w~~~~~~~~CP~CR~~~~~ 94 (247)
.-.+.|||=+.. +..|+....|.|.-|++-. ..+........||+|...+..
T Consensus 213 ~vSL~CPlS~~r--i~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 213 RVSLMCPLGKMR--LTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp EEESBCTTTCSB--CSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred EEeeeCCCccce--eccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 446789998888 8889999999999666542 223333467889999998754
No 78
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.00 E-value=0.76 Score=32.80 Aligned_cols=45 Identities=27% Similarity=0.655 Sum_probs=31.3
Q ss_pred CCCcCcccccccCccCCCceEecCC----CChhhHHHHHHHHhc---CCCCCCCC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGC----EHAYCATCILRWASY---VRNPTCPQ 87 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~C----gH~FC~~Ci~~w~~~---~~~~~CP~ 87 (247)
.+..+.|.+|.+. +.+.-++ .| .|.||..|-...++. .....||.
T Consensus 12 ~~a~l~CtlC~er--LEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHER--LEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSC--CSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCeeEeecchhh--hccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 4566789999998 5554322 33 799999999888762 23455775
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.61 E-value=0.92 Score=30.91 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=33.9
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc--CCCCCCCCCCcC
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCKHP 91 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~~~~CP~CR~~ 91 (247)
....|.||.+. .+-+.--.|...||..|+...+.. .....||.|...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34569999875 344444689999999999776542 245789999764
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.55 E-value=1.4 Score=31.92 Aligned_cols=51 Identities=29% Similarity=0.638 Sum_probs=35.5
Q ss_pred CcCcccccccCccCCCc--eEe--cCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQET--ALV--KGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~p--v~~--~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
....|.||-+.+.+... +++ -.|+-..|..|+.--.. .....||.|+.++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCccc
Confidence 45689999997533221 212 36777789999976444 36889999999865
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.46 E-value=0.83 Score=31.55 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=33.7
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc--CCCCCCCCCCcCC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCKHPF 92 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~~~~CP~CR~~~ 92 (247)
.++...|+||.........+.--.|...||..|+..-... .....||.|...+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 3455679999886211123333578889999998653321 1357799997654
No 82
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.00 E-value=3.4 Score=32.49 Aligned_cols=49 Identities=22% Similarity=0.459 Sum_probs=35.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh---------cCCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS---------YVRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~---------~~~~~~CP~CR~~ 91 (247)
...+..|.||.+- .+-+.--.|-..||..||.+-+. ......||.|...
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4456689999985 34344468999999999986442 2356789999753
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=72.60 E-value=3.9 Score=29.35 Aligned_cols=48 Identities=15% Similarity=0.400 Sum_probs=30.2
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHH--Hh------------cCCCCCCCCCCc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRW--AS------------YVRNPTCPQCKH 90 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w--~~------------~~~~~~CP~CR~ 90 (247)
.+..|.||-.. ....-..-.-|+-.||..||.+. .. +....+||.|..
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 45579999864 01111112468999999999995 11 123467999943
No 84
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=70.01 E-value=1.5 Score=31.57 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=33.4
Q ss_pred CCCcCcccccccCc--cCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCC
Q 025884 40 GNHGGVCAICLDKT--VLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPF 92 (247)
Q Consensus 40 ~~~~~~C~ICl~~~--~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~ 92 (247)
..+...|.||...- ....-+.--.|.-.||..|+..-....+...||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 34567899999751 001222235788899999996532223567799997653
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=69.19 E-value=3 Score=27.67 Aligned_cols=48 Identities=25% Similarity=0.573 Sum_probs=33.0
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh--cCCCCCCCCCCc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~--~~~~~~CP~CR~ 90 (247)
..+...|.||... .+-+.--.|...||..|+..-+. ......||.|..
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3445679999875 33343457888999999976432 124577999965
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=67.29 E-value=1.3 Score=35.83 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=33.1
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhc--CCCCCCCCCCcCC
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCKHPF 92 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~~~~CP~CR~~~ 92 (247)
...|.||... .+-+.--.|...||..|+..-+.. .+...||.|+..-
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 3469999875 344445679999999998664431 2457799998754
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=66.51 E-value=2 Score=31.36 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=29.9
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh-cCCCCCCCCCCc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS-YVRNPTCPQCKH 90 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~-~~~~~~CP~CR~ 90 (247)
.+...| ||........-+.--.|...||..|+..-.. ......||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 344567 8877521223333357888999999854222 123578999974
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=64.57 E-value=1.2 Score=36.87 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=33.2
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc--CCCCCCCCCCcCC
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCKHPF 92 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~~~~CP~CR~~~ 92 (247)
....|.+|... .+-+.--.|...||..|+...+.. .+...||.|+..-
T Consensus 6 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34569999875 333434578999999998664431 2457899998754
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=62.60 E-value=4.4 Score=25.54 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=29.2
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhc--CCCCCCCCCCc
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCKH 90 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~~~~CP~CR~ 90 (247)
.|.||...-....-+.--.|...||..|+..=+.. .+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48889875111233334688899999999642221 24567999965
No 90
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.48 E-value=3 Score=30.26 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=29.0
Q ss_pred CCCcCcccccccCccCCCceEecC--CC-ChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKG--CE-HAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~--Cg-H~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
.++...| ||.... ....+.--. |. ..||..|+.--........||.|+..
T Consensus 33 ~~e~~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCC-CCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 4456678 999862 122221123 44 57999998621111245789999764
No 91
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=62.19 E-value=8.7 Score=29.62 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=33.4
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHH------h---cCCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWA------S---YVRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~------~---~~~~~~CP~CR~~ 91 (247)
...+..|.||.+- .+-+.--.|-..||..||.+-+ . ......|+.|..+
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3445569999985 2333335889999999998742 1 1356789999654
No 92
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.18 E-value=1.5 Score=26.04 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=7.8
Q ss_pred CcCcccccccC
Q 025884 42 HGGVCAICLDK 52 (247)
Q Consensus 42 ~~~~C~ICl~~ 52 (247)
++++||||+..
T Consensus 4 EGFiCP~C~~~ 14 (34)
T 3mjh_B 4 EGFICPQCMKS 14 (34)
T ss_dssp EEEECTTTCCE
T ss_pred cccCCcHHHHH
Confidence 45777777776
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=61.78 E-value=1.6 Score=29.01 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=32.1
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh--cCCCCCCCCCCcC
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHP 91 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~--~~~~~~CP~CR~~ 91 (247)
.+...|.||... .+-+.--.|...||..|+..-+. ......||.|...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345679999874 23333457888999999975332 1245679999764
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=60.02 E-value=3 Score=30.85 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=32.0
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHhc--CCCCCCCCCC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VRNPTCPQCK 89 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~~~~CP~CR 89 (247)
..++..|.||.+.=.+.+-+.-..|+..||..||...+.. .....||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4456689999886112222444689999999999765431 1345677664
No 95
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=57.76 E-value=3.6 Score=30.32 Aligned_cols=12 Identities=25% Similarity=1.210 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHh
Q 025884 67 AYCATCILRWAS 78 (247)
Q Consensus 67 ~FC~~Ci~~w~~ 78 (247)
.||..||..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 96
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=57.74 E-value=3.6 Score=30.37 Aligned_cols=12 Identities=25% Similarity=1.146 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHh
Q 025884 67 AYCATCILRWAS 78 (247)
Q Consensus 67 ~FC~~Ci~~w~~ 78 (247)
.||..||..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999987
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.34 E-value=6 Score=27.46 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=32.7
Q ss_pred CCCcCcccccccCcc-CCCceEecCCCChhhHHHHHHHHh---cCCCCCCCCCCcCCc
Q 025884 40 GNHGGVCAICLDKTV-LQETALVKGCEHAYCATCILRWAS---YVRNPTCPQCKHPFE 93 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~-~~~pv~~~~CgH~FC~~Ci~~w~~---~~~~~~CP~CR~~~~ 93 (247)
..+...| ||..... ....++--.|...||..|+.--.. ......||.|+....
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3445567 8988632 122344457888999999843111 124678999987643
No 98
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=57.07 E-value=4.7 Score=27.67 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCCcCcccccccCccCCCce-EecC--CC-ChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETA-LVKG--CE-HAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv-~~~~--Cg-H~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
.++...| ||... ....+ .--. |. ..||..|+.--........||.|+..
T Consensus 13 ~~~~~~C-~C~~~--~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 13 PNEPTYC-LCHQV--SYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TTSCCCS-TTCCC--SCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred CCCCCEE-ECCCC--CCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 3456678 89886 32222 1123 55 58999998621111245789999764
No 99
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=56.40 E-value=1.3 Score=31.21 Aligned_cols=35 Identities=23% Similarity=0.623 Sum_probs=22.2
Q ss_pred cCcccc--cccCccCC---CceEec-----CCCChhhHHHHHHHH
Q 025884 43 GGVCAI--CLDKTVLQ---ETALVK-----GCEHAYCATCILRWA 77 (247)
Q Consensus 43 ~~~C~I--Cl~~~~~~---~pv~~~-----~CgH~FC~~Ci~~w~ 77 (247)
..-||- |...+... ..+.-. .|++.||..|...|.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 345886 87753221 223223 699999999988774
No 100
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=56.27 E-value=5.6 Score=27.12 Aligned_cols=33 Identities=30% Similarity=0.606 Sum_probs=24.3
Q ss_pred CCcCcccccccCccCCCceEecCC-CChhhHHHHHHHH
Q 025884 41 NHGGVCAICLDKTVLQETALVKGC-EHAYCATCILRWA 77 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~C-gH~FC~~Ci~~w~ 77 (247)
.+..-|.||.+. . .+.-+.| +-.||..|+....
T Consensus 6 ee~pWC~ICneD--A--tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED--A--TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC--C--CEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC--C--eEEecCCCCceehHHHHHHHc
Confidence 344569999997 3 2556789 7899999987643
No 101
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=55.88 E-value=3.4 Score=28.39 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=31.9
Q ss_pred CCCcCcccccccCc--cCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 40 GNHGGVCAICLDKT--VLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 40 ~~~~~~C~ICl~~~--~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
..+...|.||...- ....-+.--.|.-.||..|+..-....+...||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34556799998751 0122333358888999999864322234667988854
No 102
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=53.37 E-value=5.2 Score=26.63 Aligned_cols=42 Identities=21% Similarity=0.605 Sum_probs=27.2
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCC
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQC 88 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~C 88 (247)
.|-.|+..|.......-..|.+.||.+|=. ++. .....||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiH-e~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVH-DSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHH-TTT-TTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhH-HHH-hhccCCcCC
Confidence 498999884211113346899999999943 322 245679988
No 103
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=53.05 E-value=8.3 Score=27.49 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=24.4
Q ss_pred CCCcCcccccccCccCCC-ceEecCCCChhhHHHHHH
Q 025884 40 GNHGGVCAICLDKTVLQE-TALVKGCEHAYCATCILR 75 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~ 75 (247)
..+...|.+|...|.+.. ..--..||+.||..|...
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 344557999999854432 122358999999999644
No 104
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=52.02 E-value=5.4 Score=28.73 Aligned_cols=49 Identities=16% Similarity=0.456 Sum_probs=33.4
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh--cCCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~--~~~~~~CP~CR~~ 91 (247)
......|.||... .+-+.--.|.-.||..|+..-+. ..+...||.|...
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3445579999975 33444457888999999966433 1245679999764
No 105
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=51.09 E-value=8.5 Score=27.05 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=24.2
Q ss_pred CCcCcccccccCccCCC-ceEecCCCChhhHHHHHH
Q 025884 41 NHGGVCAICLDKTVLQE-TALVKGCEHAYCATCILR 75 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~ 75 (247)
.+...|.+|...|.+.. ..--..||+.||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34557999999854432 222368999999999644
No 106
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.86 E-value=1.4 Score=28.74 Aligned_cols=48 Identities=19% Similarity=0.512 Sum_probs=31.1
Q ss_pred CCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh--cCCCCCCCCCCc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~--~~~~~~CP~CR~ 90 (247)
..+...|.||... ..-+.--.|...||..|+..-+. ......||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3455679999885 23343468888999999875332 123456888753
No 107
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=49.60 E-value=8.3 Score=26.96 Aligned_cols=34 Identities=21% Similarity=0.594 Sum_probs=23.4
Q ss_pred CcCcccccccCccCCC-ceEecCCCChhhHHHHHH
Q 025884 42 HGGVCAICLDKTVLQE-TALVKGCEHAYCATCILR 75 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~ 75 (247)
+...|.+|...|.+.. ..--..||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4456999999854332 222358999999999654
No 108
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.27 E-value=7.7 Score=25.56 Aligned_cols=52 Identities=17% Similarity=0.435 Sum_probs=32.6
Q ss_pred CCCcCcccccccCccC-CCceEecCCCChhhHHHHHHHHh---cCCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVL-QETALVKGCEHAYCATCILRWAS---YVRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~-~~pv~~~~CgH~FC~~Ci~~w~~---~~~~~~CP~CR~~ 91 (247)
.++...|+||...+.. ...++--.|...||..|+.--.. ......||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3456679999987321 22333457888899999854211 1245779988653
No 109
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=49.22 E-value=6.9 Score=29.77 Aligned_cols=34 Identities=18% Similarity=0.463 Sum_probs=23.4
Q ss_pred CcCcccccccCccCCC-ceEecCCCChhhHHHHHH
Q 025884 42 HGGVCAICLDKTVLQE-TALVKGCEHAYCATCILR 75 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~ 75 (247)
+...|.+|...|.+.. ..--..||+.||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3457999999854332 222358999999999643
No 110
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=48.29 E-value=14 Score=27.29 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=33.9
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+-+.|..|...| ........=+..||..|..+.+ ...|+.|..+|..
T Consensus 29 ~CF~C~~C~~~L--~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSIL--AGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBC--TTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCC--CcCEEEeECCEEechHHhCcCc----CccCcccCCcCCc
Confidence 457899999874 3323344668889999987653 4679999998863
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=46.40 E-value=9 Score=27.34 Aligned_cols=34 Identities=21% Similarity=0.523 Sum_probs=23.5
Q ss_pred cCcccccccCccCCC-ceEecCCCChhhHHHHHHH
Q 025884 43 GGVCAICLDKTVLQE-TALVKGCEHAYCATCILRW 76 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w 76 (247)
...|.+|...|.+.. ..--..||+.||..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 346999998854332 2223689999999996543
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.38 E-value=10 Score=26.52 Aligned_cols=33 Identities=18% Similarity=0.524 Sum_probs=22.4
Q ss_pred CcCcccccccCccCCC-ceEecCCCChhhHHHHH
Q 025884 42 HGGVCAICLDKTVLQE-TALVKGCEHAYCATCIL 74 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~ 74 (247)
+...|.+|...|.+.. .---..||..||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3456999999854332 12235899999999953
No 113
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=45.60 E-value=2.9 Score=28.46 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=30.0
Q ss_pred CCCCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh-cCCCCCCCCCCc
Q 025884 39 FGNHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS-YVRNPTCPQCKH 90 (247)
Q Consensus 39 ~~~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~-~~~~~~CP~CR~ 90 (247)
...+...| ||.........+.--.|...||..|+.--.. ......||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34556678 9988632112333356888899988753211 124567888854
No 114
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=45.55 E-value=2.4 Score=28.52 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=31.3
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHh--cCCCCCCCCCCcC
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHP 91 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~--~~~~~~CP~CR~~ 91 (247)
+...|.||... .+-+.--.|...||..|+..-+. ......||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45579999875 34444457888999999875322 1245679988653
No 115
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=45.19 E-value=21 Score=32.47 Aligned_cols=49 Identities=20% Similarity=0.522 Sum_probs=32.6
Q ss_pred CCCcCcccccccCccCCCceEec--CCCChhhHHHHHHHHh--------cCCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWAS--------YVRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~--~CgH~FC~~Ci~~w~~--------~~~~~~CP~CR~~ 91 (247)
...+..|.+|-+- .+-+.-- .|...||..||.+++. ......|=+|.-.
T Consensus 90 DG~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3345678888775 2223233 7889999999999873 1245678888654
No 116
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=45.14 E-value=4.5 Score=33.00 Aligned_cols=46 Identities=17% Similarity=0.439 Sum_probs=31.2
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHHh--cCCCCCCCCCCcCC
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKHPF 92 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~--~~~~~~CP~CR~~~ 92 (247)
..|.+|... .+-+....|...||..|+..-+. ..+...||.|+..-
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 359999875 23333457888999999965332 13456799998753
No 117
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=42.66 E-value=3.3 Score=27.21 Aligned_cols=46 Identities=20% Similarity=0.528 Sum_probs=30.3
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHh--cCCCCCCCCCCc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~--~~~~~~CP~CR~ 90 (247)
++..|.||... ..-+.--.|...||..|+..-+. ..+...||.|..
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 34579999875 33344468888999999875322 123566888854
No 118
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=42.61 E-value=4 Score=32.47 Aligned_cols=50 Identities=20% Similarity=0.431 Sum_probs=31.5
Q ss_pred CCcCcccccccCcc-CCCceEecCCCChhhHHHHHHHH---hcCCCCCCCCCCcC
Q 025884 41 NHGGVCAICLDKTV-LQETALVKGCEHAYCATCILRWA---SYVRNPTCPQCKHP 91 (247)
Q Consensus 41 ~~~~~C~ICl~~~~-~~~pv~~~~CgH~FC~~Ci~~w~---~~~~~~~CP~CR~~ 91 (247)
.+...| ||..... ...-+.--.|...||..|+.--. .......||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 455678 9988621 12234445788899999984311 11356789999864
No 119
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=42.30 E-value=13 Score=25.33 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=21.5
Q ss_pred CcccccccCccCCC-ceEecCCCChhhHHHHH
Q 025884 44 GVCAICLDKTVLQE-TALVKGCEHAYCATCIL 74 (247)
Q Consensus 44 ~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~ 74 (247)
..|.+|...|.+.. ..--..||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 36999999854332 22235899999999954
No 120
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=41.43 E-value=22 Score=28.38 Aligned_cols=48 Identities=21% Similarity=0.523 Sum_probs=31.1
Q ss_pred CCCcCcccccccCccCCCceEec--CCCChhhHHHHHHHHhc--------CCCCCCCCCCc
Q 025884 40 GNHGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWASY--------VRNPTCPQCKH 90 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~--~CgH~FC~~Ci~~w~~~--------~~~~~CP~CR~ 90 (247)
...+..|.||-+- .+-+.-- .|...||..||..++.. .....|=+|.-
T Consensus 76 DG~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 3345678888875 2222112 58899999999987752 23456888854
No 121
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=39.69 E-value=11 Score=29.07 Aligned_cols=33 Identities=15% Similarity=0.537 Sum_probs=22.5
Q ss_pred CCcCcccccccCccCC--CceEecCCCChhhHHHH
Q 025884 41 NHGGVCAICLDKTVLQ--ETALVKGCEHAYCATCI 73 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~--~pv~~~~CgH~FC~~Ci 73 (247)
...-.|.+|...|.+. ....-..|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 4567899999986432 22334678888888774
No 122
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.12 E-value=44 Score=24.45 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=28.1
Q ss_pred cCcccccccCc------cCCCceEecCCCChhhHHHHHH------HHhcCCCCCCCCCC
Q 025884 43 GGVCAICLDKT------VLQETALVKGCEHAYCATCILR------WASYVRNPTCPQCK 89 (247)
Q Consensus 43 ~~~C~ICl~~~------~~~~pv~~~~CgH~FC~~Ci~~------w~~~~~~~~CP~CR 89 (247)
...|.+|+..- ...+-+.-..|+..||..||.. .+. .....||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK-ALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH-TSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh-ccccccccCC
Confidence 34699998741 0112233368999999999942 222 2566777775
No 123
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.84 E-value=10 Score=30.07 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=32.2
Q ss_pred CcCcccccccCccCC--CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 42 HGGVCAICLDKTVLQ--ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~--~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
..-.|.+|...|.+. ....-..|.|.+|..|- .|........|-+|...
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 456899999975433 23445689999999995 24333344567777554
No 124
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.83 E-value=54 Score=21.72 Aligned_cols=28 Identities=39% Similarity=0.478 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 025884 214 KRALKREAADKAAASKHQQHLARLGRNLE 242 (247)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (247)
||+..++||.+.-.-| ++|+..|..+++
T Consensus 13 KR~rNreAArrsR~RK-~~~~~~Le~~v~ 40 (63)
T 2dgc_A 13 KRARNTEAARRSRARK-LQRMKQLEDKVE 40 (63)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4555788887777655 888888876654
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.42 E-value=11 Score=31.08 Aligned_cols=33 Identities=21% Similarity=0.683 Sum_probs=22.6
Q ss_pred cCcccccccCccCCC-ceEecCCCChhhHHHHHH
Q 025884 43 GGVCAICLDKTVLQE-TALVKGCEHAYCATCILR 75 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~ 75 (247)
...|.+|...|.+.. ..--..||+.||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 468999998854332 222358999999988543
No 126
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=38.12 E-value=2.7 Score=37.19 Aligned_cols=47 Identities=15% Similarity=0.448 Sum_probs=31.9
Q ss_pred CCcCcccccccCccCCCceEec---CCC--ChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 41 NHGGVCAICLDKTVLQETALVK---GCE--HAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~---~Cg--H~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
+....||||-.. ..-.+... .=| +.+|..|-..|-- ....||.|...
T Consensus 180 ~~~~~CPvCGs~--P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSP--PMAGMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCC--EEEEEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC
T ss_pred ccCCCCCCCCCc--CceeEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC
Confidence 567789999986 22222111 123 4678889888965 57789999876
No 127
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.99 E-value=34 Score=23.16 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=30.6
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHh-------cCCCCCCCCCCcC
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS-------YVRNPTCPQCKHP 91 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~-------~~~~~~CP~CR~~ 91 (247)
+...| ||.........++--.|...||..|+.--.. ......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 34667 8988732223333457888999999832110 1257889999754
No 128
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.81 E-value=3.6 Score=29.68 Aligned_cols=50 Identities=20% Similarity=0.439 Sum_probs=30.6
Q ss_pred CCcCcccccccCccCCCceEecCCCChhhHHHHHHHHh--cCCCCCCCCCCc
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCEHAYCATCILRWAS--YVRNPTCPQCKH 90 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~--~~~~~~CP~CR~ 90 (247)
.+...|.||...-....-+.--.|...||..|+..-+. ......||.|..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34557999988611112333357888999999864222 123566998854
No 129
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.72 E-value=23 Score=26.15 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=33.1
Q ss_pred cCcccccccCccC-CCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVL-QETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~-~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
-+.|..|...|.. .... ...=+..||..|..+.+. ....|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~--~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFG--NSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHC--CCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcC--CCCccccCCCCcCc
Confidence 3678889887321 1222 345677899999988764 33379999998764
No 130
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=37.15 E-value=20 Score=26.54 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=34.1
Q ss_pred CcCcccccccCccCC-CceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQ-ETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~-~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+-+.|..|...|... .+. ...=+..||..|..+.+. ....|..|..+|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~~y~~~~~--~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLFG--QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCE-EEETTEEECHHHHHHHHC--CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeE-EEECCEEeecCchhhhCC--CccChhhcCCccCc
Confidence 457899998874221 233 345677899999988653 22379999998753
No 131
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.59 E-value=7.4 Score=35.15 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred CcCcccccccCccCCC-ceEecCCCChhhHHHHHHHHhc-----CCCCCCCCCCc
Q 025884 42 HGGVCAICLDKTVLQE-TALVKGCEHAYCATCILRWASY-----VRNPTCPQCKH 90 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~~~-----~~~~~CP~CR~ 90 (247)
+...|.+|...|.+.. ......||+.||..|...++.. .....|-.|-.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp -------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 3457999998753321 1223589999999998765421 12345666644
No 132
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=36.51 E-value=13 Score=28.17 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=28.0
Q ss_pred CCcCcccccccCccCCC-ceEecCCCChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 41 NHGGVCAICLDKTVLQE-TALVKGCEHAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
.....|..|...|.+.. ..--..||..||..|....+. ....|-.|-.
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--~vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--GPRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--CceECHHHHH
Confidence 34457999999854322 122368999999999765443 3455666643
No 133
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=35.34 E-value=44 Score=22.86 Aligned_cols=35 Identities=20% Similarity=0.527 Sum_probs=23.6
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHH
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRW 76 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w 76 (247)
....|-+|...-...-...-+.|.-.||..|+..+
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~ 63 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 63 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhh
Confidence 35679999874101222335789999999999863
No 134
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=34.41 E-value=3.8 Score=28.98 Aligned_cols=31 Identities=29% Similarity=0.743 Sum_probs=20.0
Q ss_pred ccccccCccC---CCceEecCCCChhhHHHHHHH
Q 025884 46 CAICLDKTVL---QETALVKGCEHAYCATCILRW 76 (247)
Q Consensus 46 C~ICl~~~~~---~~pv~~~~CgH~FC~~Ci~~w 76 (247)
||-|...+.. ...+.-..|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 8877664311 123433359999999998877
No 135
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=34.08 E-value=15 Score=30.66 Aligned_cols=33 Identities=15% Similarity=0.490 Sum_probs=22.9
Q ss_pred cCcccccccCccCCC-ceEecCCCChhhHHHHHH
Q 025884 43 GGVCAICLDKTVLQE-TALVKGCEHAYCATCILR 75 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~-pv~~~~CgH~FC~~Ci~~ 75 (247)
...|.+|...|.+.. ..--..||+.||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 458999998754332 222368999999999643
No 136
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.63 E-value=4 Score=29.17 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=32.1
Q ss_pred cCcccccccCccC--CCceEecCCCChhhHHHHHHHHh------cCCCCCCCCCCcCC
Q 025884 43 GGVCAICLDKTVL--QETALVKGCEHAYCATCILRWAS------YVRNPTCPQCKHPF 92 (247)
Q Consensus 43 ~~~C~ICl~~~~~--~~pv~~~~CgH~FC~~Ci~~w~~------~~~~~~CP~CR~~~ 92 (247)
...|.||...-.. ..-++--.|...||..|+..-+. ......|+.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4579999975101 12233357899999999975332 13567899996643
No 137
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.45 E-value=47 Score=22.68 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=30.3
Q ss_pred CCCcCcccccccCccCCCceEec--CCCChhhHHHHHHHHhc-------CCCCCCCCCCcC
Q 025884 40 GNHGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWASY-------VRNPTCPQCKHP 91 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~--~CgH~FC~~Ci~~w~~~-------~~~~~CP~CR~~ 91 (247)
.++...| ||.........+.-- .|...||..|+.--... .....||.|+..
T Consensus 13 ~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 13 PEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3456678 898862222223223 68889999998431110 135679999654
No 138
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=32.28 E-value=8.4 Score=32.55 Aligned_cols=46 Identities=20% Similarity=0.517 Sum_probs=26.1
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhc--CC-CCCCCCCCc
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VR-NPTCPQCKH 90 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~-~~~CP~CR~ 90 (247)
.|.+|...-....-+.--.|...||..|+..-+.. .+ ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57788763112233334589999999999853331 23 567999965
No 139
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.13 E-value=14 Score=26.03 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=31.1
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFE 93 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~ 93 (247)
+-+.|..|...| ........=+..||..|..+. -...|..|..+|.
T Consensus 32 ~CF~C~~C~~~L--~~~~~~~~~g~~yC~~cy~~~----~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPL--ANETFVAKDNKILCNKCTTRE----DSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCT--TSSCCEEETTEEECHHHHTTC----CCCBCSSSCCBCC
T ss_pred cCCcccccCCCC--CcCeeECcCCEEEChhHhhhh----cCCccccCCCccc
Confidence 446788888874 332223456778999987442 3567999998876
No 140
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=31.72 E-value=7.9 Score=28.80 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=26.1
Q ss_pred cccccccCccC-------CCceEecCCCChhhHHHHHHH------HhcCCCCCCCCC
Q 025884 45 VCAICLDKTVL-------QETALVKGCEHAYCATCILRW------ASYVRNPTCPQC 88 (247)
Q Consensus 45 ~C~ICl~~~~~-------~~pv~~~~CgH~FC~~Ci~~w------~~~~~~~~CP~C 88 (247)
.|.||+..-.. .+-+.-..|+..||..||... +. .....||.|
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C 58 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVK-TYKWQCIEC 58 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHH-HTTCCCGGG
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccC-CCccCcccc
Confidence 59999875100 122333689999999998542 22 245667766
No 141
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=31.54 E-value=19 Score=29.23 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=32.5
Q ss_pred CcccccccCccCCC----ceEecCCCChhhHHHHHH------HHhc---CCCCCCCCCCcCCc
Q 025884 44 GVCAICLDKTVLQE----TALVKGCEHAYCATCILR------WASY---VRNPTCPQCKHPFE 93 (247)
Q Consensus 44 ~~C~ICl~~~~~~~----pv~~~~CgH~FC~~Ci~~------w~~~---~~~~~CP~CR~~~~ 93 (247)
..||||...+...+ -+.--.|...||..|+.- -+.. .....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 46999998754333 233457889999999832 1110 02578999988654
No 142
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=30.69 E-value=39 Score=22.49 Aligned_cols=33 Identities=18% Similarity=0.471 Sum_probs=20.7
Q ss_pred CCcCcccccccCccCCCc-eEec-CCCChhhHHHH
Q 025884 41 NHGGVCAICLDKTVLQET-ALVK-GCEHAYCATCI 73 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~p-v~~~-~CgH~FC~~Ci 73 (247)
.....|++|...+..... +.-- .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 345579999997433322 2234 67888999998
No 143
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.49 E-value=10 Score=26.42 Aligned_cols=46 Identities=26% Similarity=0.459 Sum_probs=28.6
Q ss_pred cccccccCccCCCceEecCCCChhhHHHHHHHHhc--CC-CCCCCCCCc
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATCILRWASY--VR-NPTCPQCKH 90 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~-~~~CP~CR~ 90 (247)
.|.||...-....-+.--.|...||..|+..-+.. .+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 57788863112233333588899999999753321 23 567999864
No 144
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.32 E-value=60 Score=21.03 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=6.8
Q ss_pred CCChhhHHHHHHHH
Q 025884 64 CEHAYCATCILRWA 77 (247)
Q Consensus 64 CgH~FC~~Ci~~w~ 77 (247)
=+..||..|..+.+
T Consensus 52 ~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 52 ERRAYCEGCYVATL 65 (72)
T ss_dssp SSCEEEHHHHHHHH
T ss_pred CCeEECHHHHHHHH
Confidence 34455555554443
No 145
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=29.27 E-value=20 Score=23.55 Aligned_cols=51 Identities=24% Similarity=0.508 Sum_probs=32.4
Q ss_pred CCcCcccccccCccC--CCceEecCCCChhhHHHHHHHHh-----cCCCCCCCCCCcC
Q 025884 41 NHGGVCAICLDKTVL--QETALVKGCEHAYCATCILRWAS-----YVRNPTCPQCKHP 91 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~--~~pv~~~~CgH~FC~~Ci~~w~~-----~~~~~~CP~CR~~ 91 (247)
.+...|.||...... ..-+.--.|...||..|+..-+. ......||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 445679999975111 22333368888999999875221 2356779988654
No 146
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.99 E-value=84 Score=21.34 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 025884 214 KRALKREAADKAAASKHQQHLARLGRNLE 242 (247)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (247)
+++|.|.|...--.-| .+|+..|..++.
T Consensus 12 R~~qNR~AQRafReRK-~~~i~~LE~~v~ 39 (70)
T 1gd2_E 12 RKAQNRAAQRAFRKRK-EDHLKALETQVV 39 (70)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455555544434444 677777765543
No 147
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=28.67 E-value=8.4 Score=26.87 Aligned_cols=29 Identities=24% Similarity=0.581 Sum_probs=19.8
Q ss_pred cCCCChhhHHHHHHHHhc--CCC-CCCCCCCc
Q 025884 62 KGCEHAYCATCILRWASY--VRN-PTCPQCKH 90 (247)
Q Consensus 62 ~~CgH~FC~~Ci~~w~~~--~~~-~~CP~CR~ 90 (247)
-.|...||..|+..-+.. ... ..||.|+.
T Consensus 45 D~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 45 DECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 478889999999764331 123 67999964
No 148
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=28.65 E-value=5.2 Score=26.67 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=26.5
Q ss_pred CCcCcccccccCccCCCce-EecC--CC-ChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 41 NHGGVCAICLDKTVLQETA-LVKG--CE-HAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv-~~~~--Cg-H~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
++...| ||... ....+ .--. |. ..||..|+.--........||.|+.
T Consensus 9 ~e~~yC-~C~~~--~~g~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQV--SYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEE--CCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCC--CCCCeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 445567 99886 22222 1123 44 6899999862111124567998864
No 149
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=27.72 E-value=5.3 Score=26.37 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=25.8
Q ss_pred CCcCcccccccCccCCCce-EecC--CC-ChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 41 NHGGVCAICLDKTVLQETA-LVKG--CE-HAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv-~~~~--Cg-H~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
++...| ||... ....+ .--. |. ..||..|+.--....+...||.|..
T Consensus 8 ~e~~~C-~C~~~--~~g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQV--SYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEE--CCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCc--CCCCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccC
Confidence 345567 89886 32222 1123 44 5799999862111124567888854
No 150
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.16 E-value=3.2 Score=30.55 Aligned_cols=44 Identities=25% Similarity=0.512 Sum_probs=27.8
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCccc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEFL 95 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~~ 95 (247)
....||+|...+... =++.+|..|-..+. ....||.|..++..+
T Consensus 31 M~~~CP~Cq~eL~~~-------g~~~hC~~C~~~f~---~~a~CPdC~q~LevL 74 (101)
T 2jne_A 31 MELHCPQCQHVLDQD-------NGHARCRSCGEFIE---MKALCPDCHQPLQVL 74 (101)
T ss_dssp CCCBCSSSCSBEEEE-------TTEEEETTTCCEEE---EEEECTTTCSBCEEE
T ss_pred ccccCccCCCcceec-------CCEEECccccchhh---ccccCcchhhHHHHH
Confidence 457899999873111 12334777744322 346799999998753
No 151
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=26.97 E-value=6.6 Score=28.35 Aligned_cols=49 Identities=12% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCCcCcccccccCccCCCceEecCCC---ChhhHHHHHHHHhcCCCCCCCC-CCc
Q 025884 40 GNHGGVCAICLDKTVLQETALVKGCE---HAYCATCILRWASYVRNPTCPQ-CKH 90 (247)
Q Consensus 40 ~~~~~~C~ICl~~~~~~~pv~~~~Cg---H~FC~~Ci~~w~~~~~~~~CP~-CR~ 90 (247)
.++...| ||.... ....+.--.|. ..||..|+.--........||. |+.
T Consensus 23 ~~~~~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCC-CCCEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 4456678 999851 22222122333 5799999852111124577999 864
No 152
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=25.81 E-value=4.8 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=26.5
Q ss_pred CCcCcccccccCccCCCce-EecC--CC-ChhhHHHHHHHHhcCCCCCCCCCCc
Q 025884 41 NHGGVCAICLDKTVLQETA-LVKG--CE-HAYCATCILRWASYVRNPTCPQCKH 90 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv-~~~~--Cg-H~FC~~Ci~~w~~~~~~~~CP~CR~ 90 (247)
++...| ||... ....+ .--. |. ..||..|+.--........||.|+.
T Consensus 7 ~e~~yC-~C~~~--~~g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQV--SYGEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEE--CCSEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCC--CCCCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 445567 99886 32222 1123 55 5899999862111124567988854
No 153
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=25.40 E-value=14 Score=25.08 Aligned_cols=45 Identities=20% Similarity=0.527 Sum_probs=26.4
Q ss_pred ccccccCccCCCceEecCCCChhhHHHHHHHHhc--CC-CCCCCCCCc
Q 025884 46 CAICLDKTVLQETALVKGCEHAYCATCILRWASY--VR-NPTCPQCKH 90 (247)
Q Consensus 46 C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~--~~-~~~CP~CR~ 90 (247)
|.||...-....-+.--.|...||..|+..-+.. .+ ...||.|..
T Consensus 21 C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp BTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4566653101222223478899999999753321 23 567999975
No 154
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.09 E-value=59 Score=20.92 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=17.6
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHH
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWA 77 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~ 77 (247)
-+.|..|...| ........=+..||..|..+.+
T Consensus 31 CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKL--AGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBC--TTSCEEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCC--CCCccEeECCEEECHHHhHHHh
Confidence 45666666653 2222233445667777766554
No 155
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.41 E-value=49 Score=21.78 Aligned_cols=42 Identities=24% Similarity=0.458 Sum_probs=26.1
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....|+.|...|...+.+ +..-+..||..| +.|-.|..++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C----------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKI-VNSNGELYHEQC----------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTC-EEETTEEECTTT----------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceE-EEeCccEecccc----------CeECCCCCCCCC
Confidence 345699999975323443 224566666655 448888887754
No 156
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=24.13 E-value=36 Score=24.87 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=30.8
Q ss_pred cCcccccccCccCCCc-eEec-CCCChhhHHHHHHH------H--hcCCCCCCCCCCcCCc
Q 025884 43 GGVCAICLDKTVLQET-ALVK-GCEHAYCATCILRW------A--SYVRNPTCPQCKHPFE 93 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~p-v~~~-~CgH~FC~~Ci~~w------~--~~~~~~~CP~CR~~~~ 93 (247)
...|+||...+..... +.-- .|...||..|+.-- + .......||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 3569999997433222 2222 57888999998321 1 0113567999987543
No 157
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.07 E-value=39 Score=21.91 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=14.8
Q ss_pred CcccccccCccCCCceEecCCCChhhHHHHHHHH
Q 025884 44 GVCAICLDKTVLQETALVKGCEHAYCATCILRWA 77 (247)
Q Consensus 44 ~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~ 77 (247)
+.|..|...| ........-+..||..|..+.+
T Consensus 32 F~C~~C~~~L--~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVL--ADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBC--SSSCCEEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcC--CCCccEeECCeEECHHHhhhhc
Confidence 4555565552 2211122345556666655544
No 158
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.88 E-value=22 Score=28.32 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=33.3
Q ss_pred CcCcccccccCccC-CCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVL-QETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~-~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+-|.|..|...|.. .... ...=+..||..|..+.+. ....|+.|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~cy~~~~~--~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFG--NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEE-EEETTEEECHHHHHHHHS--CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceE-EEeCCccccccccccccc--cCCccccCCCcccc
Confidence 45778888887322 1233 335678899999887653 12269999998763
No 159
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.51 E-value=84 Score=24.30 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=32.8
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
+-+.|..|...| ...... .=|..||..|..+.+ ...|..|..+|..
T Consensus 32 ~CF~C~~C~~~L--~~~~f~-~~g~~yC~~~y~~~f----~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPL--AERCFS-RGESVYCKDDFFKRF----GTKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBC--CSCCEE-SSSCEECHHHHHHHH----SCBCTTTCCBCCT
T ss_pred ccCccCCCCCcC--CCCCcc-cCCeeeecccccccc----cccccccccccCC
Confidence 457899998874 332223 567889999987765 3569999888754
No 160
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.00 E-value=52 Score=22.60 Aligned_cols=39 Identities=15% Similarity=0.428 Sum_probs=23.3
Q ss_pred cCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 43 GGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 43 ~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
...|+.|...| ...+ +..-+..||..|+. |..|..+|..
T Consensus 25 ~~~C~~C~~~I--~~~~-v~a~~~~~H~~CF~----------C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVI--RGPF-LVALGKSWHPEEFN----------CAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBC--CSCE-EEETTEEECTTTCB----------CSSSCCBCSS
T ss_pred CCCCccCCCEe--cceE-EEECCccccccCCc----------cCCCCCCCCC
Confidence 34588887774 2333 33556677777752 6667666653
No 161
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=22.69 E-value=24 Score=26.16 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=28.8
Q ss_pred CCcCcccccccCccCCCceEec--CCCChhhHHHHHHHHhc--CCCCCCCCCCcCC
Q 025884 41 NHGGVCAICLDKTVLQETALVK--GCEHAYCATCILRWASY--VRNPTCPQCKHPF 92 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~--~CgH~FC~~Ci~~w~~~--~~~~~CP~CR~~~ 92 (247)
.+...|.+|.+. .+-+.-- .|-..||..|+. +.. .+...||.|...+
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 455579999864 3322222 477889999986 331 2456788776543
No 162
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.61 E-value=18 Score=24.55 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=26.2
Q ss_pred CCcCcccccccCccCCCceEecCCC------ChhhHHHHHHHHhcCCCCCCCCCCcC
Q 025884 41 NHGGVCAICLDKTVLQETALVKGCE------HAYCATCILRWASYVRNPTCPQCKHP 91 (247)
Q Consensus 41 ~~~~~C~ICl~~~~~~~pv~~~~Cg------H~FC~~Ci~~w~~~~~~~~CP~CR~~ 91 (247)
++...| ||... .... ++.|. ..||..|+.--........||.|...
T Consensus 4 ~~~~yC-~C~~~--~~g~--MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYC-ICNQV--SYGE--MVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCS-TTSCC--CCSS--EECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCeEE-EcCCC--CCCC--EeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcc
Confidence 344556 58875 2222 33433 57999998631111245679988654
No 163
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.03 E-value=38 Score=21.93 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.5
Q ss_pred CcCcccccccC
Q 025884 42 HGGVCAICLDK 52 (247)
Q Consensus 42 ~~~~C~ICl~~ 52 (247)
+-+.||+|...
T Consensus 9 ~iL~CP~c~~~ 19 (56)
T 2kpi_A 9 EILACPACHAP 19 (56)
T ss_dssp TSCCCSSSCSC
T ss_pred hheeCCCCCCc
Confidence 45679999886
No 164
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.37 E-value=26 Score=19.69 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=14.1
Q ss_pred cccccccCccCCCceEecCCCChhhHHH
Q 025884 45 VCAICLDKTVLQETALVKGCEHAYCATC 72 (247)
Q Consensus 45 ~C~ICl~~~~~~~pv~~~~CgH~FC~~C 72 (247)
.|+.|...+-..+. +..-|..||..|
T Consensus 5 ~C~~C~k~Vy~~Ek--~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEK--VNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGC--CCSSSSCCCGGG
T ss_pred cCCccCCEEeccee--EEECCeEecccC
Confidence 57888775212222 234566666666
No 165
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.26 E-value=84 Score=21.00 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=26.2
Q ss_pred CcCcccccccCccCCCceEecCCCChhhHHHHHHHHhcCCCCCCCCCCcCCcc
Q 025884 42 HGGVCAICLDKTVLQETALVKGCEHAYCATCILRWASYVRNPTCPQCKHPFEF 94 (247)
Q Consensus 42 ~~~~C~ICl~~~~~~~pv~~~~CgH~FC~~Ci~~w~~~~~~~~CP~CR~~~~~ 94 (247)
....|+-|...|. ..+ +..-+..||..| +.|..|..+|..
T Consensus 14 ~~~~C~~C~~~I~--~~~-v~a~~~~~H~~C----------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID--EQP-LIFKNDPYHPDH----------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC--SCC-CCCSSSCCCTTT----------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec--ceE-EEECcceeCCCC----------CEeCCCCCccCC
Confidence 3456999998753 333 345666677655 458889888764
Done!