Query 025886
Match_columns 247
No_of_seqs 245 out of 1428
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 4.9E-19 1.7E-23 132.6 5.7 66 24-89 16-81 (84)
2 2dmt_A Homeobox protein BARH-l 99.8 7.7E-19 2.6E-23 130.8 5.9 64 26-89 13-76 (80)
3 1nk2_P Homeobox protein VND; h 99.7 1.1E-18 3.7E-23 129.1 6.3 67 26-92 5-71 (77)
4 2da3_A Alpha-fetoprotein enhan 99.7 6.4E-19 2.2E-23 130.5 4.5 64 26-89 13-76 (80)
5 2vi6_A Homeobox protein nanog; 99.7 5.4E-19 1.9E-23 125.4 3.2 61 29-89 2-62 (62)
6 2cue_A Paired box protein PAX6 99.7 1.8E-18 6.2E-23 128.8 6.1 63 28-90 5-67 (80)
7 2cra_A Homeobox protein HOX-B1 99.7 1E-18 3.6E-23 126.8 4.4 62 28-89 5-66 (70)
8 2dmu_A Homeobox protein goosec 99.7 1.7E-18 5.8E-23 125.6 5.3 62 28-89 5-66 (70)
9 2dms_A Homeobox protein OTX2; 99.7 1.6E-18 5.4E-23 129.0 5.0 62 28-89 5-66 (80)
10 2dmq_A LIM/homeobox protein LH 99.7 2.3E-18 7.9E-23 127.8 5.8 62 28-89 5-66 (80)
11 3a01_A Homeodomain-containing 99.7 1.2E-18 4.2E-23 133.5 4.3 67 26-92 13-79 (93)
12 2da2_A Alpha-fetoprotein enhan 99.7 1.7E-18 5.7E-23 125.5 4.6 63 27-89 4-66 (70)
13 2h1k_A IPF-1, pancreatic and d 99.7 1.8E-18 6.2E-23 123.2 4.4 59 30-88 3-61 (63)
14 2hdd_A Protein (engrailed home 99.7 1.7E-18 5.8E-23 122.5 4.0 58 30-87 3-60 (61)
15 2e1o_A Homeobox protein PRH; D 99.7 2.8E-18 9.6E-23 124.6 5.3 61 29-89 6-66 (70)
16 2da1_A Alpha-fetoprotein enhan 99.7 1.7E-18 5.9E-23 125.5 4.0 62 28-89 5-66 (70)
17 1puf_A HOX-1.7, homeobox prote 99.7 5.6E-18 1.9E-22 125.2 6.8 64 27-90 10-73 (77)
18 1fjl_A Paired protein; DNA-bin 99.7 2.9E-18 1E-22 127.8 5.3 63 27-89 15-77 (81)
19 1ig7_A Homeotic protein MSX-1; 99.7 2.9E-18 1E-22 119.8 4.6 57 31-87 1-57 (58)
20 1wh5_A ZF-HD homeobox family p 99.7 2.7E-18 9.2E-23 128.5 4.5 61 27-87 14-78 (80)
21 2djn_A Homeobox protein DLX-5; 99.7 2.1E-18 7.1E-23 125.3 3.7 61 28-88 5-65 (70)
22 1bw5_A ISL-1HD, insulin gene e 99.7 1.7E-18 5.7E-23 124.3 2.8 61 29-89 2-62 (66)
23 1zq3_P PRD-4, homeotic bicoid 99.7 5.1E-18 1.8E-22 122.7 5.0 60 30-89 2-61 (68)
24 2m0c_A Homeobox protein arista 99.7 5.2E-18 1.8E-22 124.0 5.0 63 27-89 6-68 (75)
25 2l7z_A Homeobox protein HOX-A1 99.7 6.3E-18 2.1E-22 123.9 5.4 61 28-88 5-65 (73)
26 1akh_A Protein (mating-type pr 99.7 2.6E-18 8.9E-23 121.2 3.1 59 28-86 3-61 (61)
27 1ahd_P Antennapedia protein mu 99.7 3.8E-18 1.3E-22 123.5 3.6 60 30-89 2-61 (68)
28 2da4_A Hypothetical protein DK 99.7 3.1E-18 1E-22 127.4 3.0 63 27-89 5-71 (80)
29 1jgg_A Segmentation protein EV 99.7 5.6E-18 1.9E-22 119.4 4.1 58 31-88 2-59 (60)
30 1ftt_A TTF-1 HD, thyroid trans 99.7 6.3E-18 2.2E-22 122.2 4.5 60 30-89 2-61 (68)
31 1wh7_A ZF-HD homeobox family p 99.7 5.2E-18 1.8E-22 127.1 4.0 60 27-87 14-78 (80)
32 1b8i_A Ultrabithorax, protein 99.7 6.2E-18 2.1E-22 126.4 4.3 62 28-89 18-79 (81)
33 3rkq_A Homeobox protein NKX-2. 99.7 6.5E-18 2.2E-22 117.5 4.1 57 30-86 2-58 (58)
34 1yz8_P Pituitary homeobox 2; D 99.7 3.2E-18 1.1E-22 123.6 2.1 61 29-89 2-62 (68)
35 3nar_A ZHX1, zinc fingers and 99.7 9.3E-18 3.2E-22 129.1 4.7 64 28-91 23-86 (96)
36 2r5y_A Homeotic protein sex co 99.7 9.6E-18 3.3E-22 126.9 4.5 62 27-88 25-86 (88)
37 1uhs_A HOP, homeodomain only p 99.7 1.4E-17 4.9E-22 121.4 4.8 59 31-89 2-61 (72)
38 2hi3_A Homeodomain-only protei 99.7 1.7E-17 5.8E-22 121.5 5.1 59 31-89 3-62 (73)
39 3a03_A T-cell leukemia homeobo 99.7 1.2E-17 4.1E-22 116.4 4.0 54 35-88 2-55 (56)
40 2da5_A Zinc fingers and homeob 99.7 1.5E-17 5.1E-22 122.6 4.7 58 32-89 9-66 (75)
41 3a02_A Homeobox protein arista 99.7 9.7E-18 3.3E-22 118.2 3.4 57 33-89 2-58 (60)
42 2k40_A Homeobox expressed in E 99.7 1.6E-17 5.4E-22 119.5 4.1 60 31-90 2-61 (67)
43 1b72_A Protein (homeobox prote 99.7 1.9E-17 6.6E-22 127.5 4.4 63 27-89 31-93 (97)
44 1x2n_A Homeobox protein pknox1 99.7 2.9E-17 9.8E-22 120.0 5.1 62 28-89 5-69 (73)
45 2ecc_A Homeobox and leucine zi 99.7 1.6E-17 5.5E-22 123.7 3.7 58 33-90 6-63 (76)
46 2cuf_A FLJ21616 protein; homeo 99.7 3.7E-17 1.3E-21 125.4 5.2 63 27-89 4-81 (95)
47 2ly9_A Zinc fingers and homeob 99.7 2.9E-17 1E-21 120.1 4.1 60 30-89 6-65 (74)
48 2dn0_A Zinc fingers and homeob 99.7 3.3E-17 1.1E-21 120.8 3.8 59 31-89 9-67 (76)
49 1puf_B PRE-B-cell leukemia tra 99.6 3.7E-17 1.3E-21 119.4 3.1 61 31-91 2-65 (73)
50 1du6_A PBX1, homeobox protein 99.6 4.4E-17 1.5E-21 116.0 2.6 58 30-87 3-63 (64)
51 1k61_A Mating-type protein alp 99.6 9.1E-17 3.1E-21 113.0 4.2 55 33-87 1-58 (60)
52 2dmn_A Homeobox protein TGIF2L 99.6 1.8E-16 6.3E-21 119.0 5.5 62 28-89 5-69 (83)
53 1b72_B Protein (PBX1); homeodo 99.6 1.2E-16 4.1E-21 120.3 4.3 61 31-91 2-65 (87)
54 2ecb_A Zinc fingers and homeob 99.6 1.4E-16 4.9E-21 121.8 4.7 53 36-88 17-69 (89)
55 2cqx_A LAG1 longevity assuranc 99.6 3.9E-17 1.3E-21 119.9 1.0 58 31-88 9-67 (72)
56 1mnm_C Protein (MAT alpha-2 tr 99.6 2E-16 6.8E-21 119.4 4.5 60 28-87 25-87 (87)
57 1au7_A Protein PIT-1, GHF-1; c 99.6 1.1E-16 3.6E-21 132.1 3.2 62 27-88 84-145 (146)
58 3d1n_I POU domain, class 6, tr 99.6 2.7E-16 9.1E-21 130.0 4.9 63 25-87 88-150 (151)
59 2dmp_A Zinc fingers and homeob 99.6 4E-16 1.4E-20 118.7 5.5 55 35-89 18-72 (89)
60 1le8_B Mating-type protein alp 99.6 1.4E-16 4.7E-21 119.5 2.8 59 32-90 4-65 (83)
61 1e3o_C Octamer-binding transcr 99.6 2E-16 7E-21 132.1 4.0 61 28-88 99-159 (160)
62 2xsd_C POU domain, class 3, tr 99.6 1.2E-16 4.1E-21 134.3 2.5 63 27-89 96-158 (164)
63 2da6_A Hepatocyte nuclear fact 99.6 6.1E-16 2.1E-20 121.1 6.0 63 27-89 3-86 (102)
64 2l9r_A Homeobox protein NKX-3. 99.6 2.4E-16 8.3E-21 115.1 2.4 57 34-90 8-64 (69)
65 1lfb_A Liver transcription fac 99.6 2E-16 6.8E-21 123.1 1.9 65 26-90 5-90 (99)
66 3nau_A Zinc fingers and homeob 99.6 5.7E-16 1.9E-20 112.4 3.7 53 37-89 11-63 (66)
67 1wi3_A DNA-binding protein SAT 99.6 8.5E-16 2.9E-20 112.1 4.2 60 27-86 4-64 (71)
68 1x2m_A LAG1 longevity assuranc 99.6 3E-16 1E-20 113.3 1.8 50 39-88 9-59 (64)
69 3l1p_A POU domain, class 5, tr 99.6 8.2E-16 2.8E-20 127.9 3.4 61 28-88 94-154 (155)
70 2e19_A Transcription factor 8; 99.6 8.1E-16 2.8E-20 110.5 2.8 52 36-87 9-60 (64)
71 2d5v_A Hepatocyte nuclear fact 99.5 1.3E-15 4.3E-20 127.2 3.1 63 27-89 94-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.5 2.2E-15 7.5E-20 108.9 2.8 60 35-94 3-65 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 5E-14 1.7E-18 121.5 1.1 62 26-87 111-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.3 1.3E-12 4.4E-17 99.9 4.2 58 34-91 9-69 (89)
75 2h8r_A Hepatocyte nuclear fact 99.3 1.5E-12 5.1E-17 114.3 3.2 61 25-85 137-218 (221)
76 2da7_A Zinc finger homeobox pr 99.2 2.1E-12 7.1E-17 94.6 2.8 47 39-85 14-60 (71)
77 1mh3_A Maltose binding-A1 home 99.2 3.1E-12 1.1E-16 117.2 1.8 55 32-86 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 5.1E-10 1.7E-14 72.3 -2.1 26 72-97 1-26 (37)
79 1hjb_A Ccaat/enhancer binding 91.4 0.74 2.5E-05 34.5 7.2 50 82-134 29-78 (87)
80 1gu4_A CAAT/enhancer binding p 90.9 0.43 1.5E-05 35.1 5.4 45 82-129 29-73 (78)
81 2ys9_A Homeobox and leucine zi 90.2 0.096 3.3E-06 37.9 1.3 39 42-80 18-56 (70)
82 1t2k_D Cyclic-AMP-dependent tr 83.8 5.3 0.00018 27.3 7.3 39 92-130 22-60 (61)
83 2wt7_A Proto-oncogene protein 83.6 5.6 0.00019 27.5 7.4 40 91-130 22-61 (63)
84 1ci6_A Transcription factor AT 81.6 7.6 0.00026 26.9 7.4 40 91-130 22-61 (63)
85 1gd2_E Transcription factor PA 80.5 5 0.00017 28.7 6.3 40 91-130 28-67 (70)
86 2dgc_A Protein (GCN4); basic d 79.6 3.2 0.00011 29.0 4.9 32 99-130 30-61 (63)
87 2yy0_A C-MYC-binding protein; 77.0 4.9 0.00017 27.2 5.1 33 99-131 19-51 (53)
88 1jnm_A Proto-oncogene C-JUN; B 76.0 4.9 0.00017 27.6 5.0 35 95-129 25-59 (62)
89 2jn6_A Protein CGL2762, transp 72.4 0.99 3.4E-05 32.8 0.7 42 34-79 3-45 (97)
90 1dh3_A Transcription factor CR 71.3 12 0.00042 25.2 6.0 33 98-130 21-53 (55)
91 2glo_A Brinker CG9653-PA; prot 70.6 2.1 7.1E-05 28.5 1.9 45 34-79 3-47 (59)
92 2wt7_B Transcription factor MA 69.8 13 0.00045 27.8 6.4 65 68-132 17-88 (90)
93 2elh_A CG11849-PA, LD40883P; s 67.8 5.5 0.00019 28.5 3.9 43 31-78 17-59 (87)
94 2oxj_A Hybrid alpha/beta pepti 65.1 13 0.00046 22.9 4.5 28 103-130 5-32 (34)
95 1hlv_A CENP-B, major centromer 61.0 7.1 0.00024 29.4 3.5 49 33-84 4-52 (131)
96 3m48_A General control protein 60.3 15 0.0005 22.7 4.1 27 104-130 5-31 (33)
97 3c3g_A Alpha/beta peptide with 58.5 21 0.00072 21.9 4.5 27 104-130 5-31 (33)
98 1tc3_C Protein (TC3 transposas 58.0 6.2 0.00021 23.7 2.3 40 36-80 5-44 (51)
99 2yy0_A C-MYC-binding protein; 58.0 18 0.0006 24.4 4.7 30 93-122 20-49 (53)
100 1gd2_E Transcription factor PA 56.6 19 0.00066 25.6 4.9 37 89-125 33-69 (70)
101 3c3f_A Alpha/beta peptide with 56.1 24 0.00083 21.8 4.5 27 104-130 6-32 (34)
102 2wuj_A Septum site-determining 55.1 9.8 0.00034 25.8 3.0 30 100-129 28-57 (57)
103 1ci6_A Transcription factor AT 54.0 47 0.0016 22.8 6.5 36 95-130 19-54 (63)
104 1jko_C HIN recombinase, DNA-in 53.4 3.7 0.00013 25.3 0.6 42 36-82 5-46 (52)
105 1t2k_D Cyclic-AMP-dependent tr 53.3 45 0.0015 22.5 6.3 35 96-130 19-53 (61)
106 2jee_A YIIU; FTSZ, septum, coi 52.6 58 0.002 23.9 7.0 19 111-129 53-71 (81)
107 3vmx_A Voltage-gated hydrogen 48.8 56 0.0019 21.7 6.4 42 91-132 3-44 (48)
108 2wt7_A Proto-oncogene protein 48.7 61 0.0021 22.1 7.3 35 96-130 20-54 (63)
109 1kd8_B GABH BLL, GCN4 acid bas 48.7 36 0.0012 21.3 4.5 27 104-130 6-32 (36)
110 3hnw_A Uncharacterized protein 48.1 59 0.002 25.8 7.1 42 89-130 86-127 (138)
111 1jnm_A Proto-oncogene C-JUN; B 46.2 66 0.0023 21.7 7.9 39 96-134 19-57 (62)
112 1s7o_A Hypothetical UPF0122 pr 45.9 32 0.0011 25.9 5.1 47 36-87 22-68 (113)
113 1uo4_A General control protein 45.8 34 0.0012 21.1 4.1 27 104-130 6-32 (34)
114 3hug_A RNA polymerase sigma fa 45.0 15 0.00051 26.2 2.8 45 36-85 37-81 (92)
115 1deb_A APC protein, adenomatou 44.8 32 0.0011 23.2 4.1 24 100-123 4-27 (54)
116 2bni_A General control protein 44.5 36 0.0012 21.0 4.0 27 104-130 6-32 (34)
117 1kd8_A GABH AIV, GCN4 acid bas 43.9 48 0.0016 20.7 4.5 27 104-130 6-32 (36)
118 3w03_C DNA repair protein XRCC 43.4 33 0.0011 28.8 5.1 32 99-130 152-183 (184)
119 2hy6_A General control protein 43.2 51 0.0017 20.3 4.5 27 104-130 6-32 (34)
120 1hjb_A Ccaat/enhancer binding 42.5 58 0.002 24.0 5.8 47 95-141 32-78 (87)
121 1gu4_A CAAT/enhancer binding p 42.3 44 0.0015 24.2 5.0 47 94-140 31-77 (78)
122 2o8x_A Probable RNA polymerase 39.7 8.1 0.00028 25.5 0.6 44 36-84 15-58 (70)
123 1l8d_A DNA double-strand break 39.6 69 0.0024 23.6 6.0 44 104-147 15-58 (112)
124 1nkp_B MAX protein, MYC proto- 38.2 67 0.0023 22.8 5.5 32 101-132 49-80 (83)
125 1go4_E MAD1 (mitotic arrest de 37.8 88 0.003 23.7 6.3 33 100-132 13-45 (100)
126 1wt6_A Myotonin-protein kinase 37.8 1.2E+02 0.004 22.2 6.9 42 90-131 29-70 (81)
127 3gpv_A Transcriptional regulat 37.4 63 0.0022 25.4 5.7 77 32-130 50-126 (148)
128 1uii_A Geminin; human, DNA rep 35.9 1.2E+02 0.004 22.3 6.4 29 102-130 49-77 (83)
129 3c57_A Two component transcrip 35.5 17 0.00057 26.3 1.8 46 35-86 26-71 (95)
130 3fiw_A Putative TETR-family tr 35.5 9.8 0.00033 31.0 0.6 54 31-85 19-73 (211)
131 1p4w_A RCSB; solution structur 35.0 24 0.00083 26.1 2.7 45 34-84 32-76 (99)
132 2lv7_A Calcium-binding protein 35.0 1.2E+02 0.004 21.8 6.5 46 33-78 26-78 (100)
133 2rn7_A IS629 ORFA; helix, all 34.2 27 0.00093 25.3 2.9 45 34-78 4-51 (108)
134 3ulq_B Transcriptional regulat 34.0 24 0.00082 25.5 2.5 44 30-79 23-66 (90)
135 2qko_A Possible transcriptiona 33.8 10 0.00035 30.0 0.5 40 43-83 35-74 (215)
136 3i5g_B Myosin regulatory light 33.5 78 0.0027 24.2 5.6 39 34-72 7-50 (153)
137 2wq1_A General control protein 32.8 86 0.0029 19.2 4.5 27 104-130 5-31 (33)
138 2jee_A YIIU; FTSZ, septum, coi 32.7 1.4E+02 0.0049 21.7 7.3 40 91-130 19-65 (81)
139 3m91_A Proteasome-associated A 32.6 1.1E+02 0.0038 20.3 6.1 35 96-130 13-47 (51)
140 2r2v_A GCN4 leucine zipper; co 31.9 91 0.0031 19.2 4.5 27 104-130 6-32 (34)
141 2kvr_A Ubiquitin carboxyl-term 31.6 30 0.001 27.1 2.8 24 59-82 71-94 (130)
142 3s9g_A Protein hexim1; cyclin 30.7 1.7E+02 0.0059 22.2 6.8 36 92-127 51-86 (104)
143 1nlw_A MAD protein, MAX dimeri 30.5 91 0.0031 22.3 5.1 30 101-130 49-78 (80)
144 2wuj_A Septum site-determining 30.4 40 0.0014 22.7 3.0 38 84-121 19-56 (57)
145 1fse_A GERE; helix-turn-helix 30.4 22 0.00076 23.5 1.7 46 34-85 9-54 (74)
146 2rgt_A Fusion of LIM/homeobox 30.2 0.92 3.2E-05 36.7 -6.5 30 28-57 134-163 (169)
147 3m9b_A Proteasome-associated A 30.0 94 0.0032 27.3 6.0 37 97-133 59-95 (251)
148 1nkp_A C-MYC, MYC proto-oncoge 30.0 1E+02 0.0035 22.3 5.4 28 103-130 56-83 (88)
149 3mzy_A RNA polymerase sigma-H 29.9 32 0.0011 25.7 2.7 39 36-80 109-147 (164)
150 3lph_A Protein REV; helix-loop 29.6 39 0.0013 24.3 2.8 35 42-90 18-52 (72)
151 1je8_A Nitrate/nitrite respons 29.3 37 0.0013 23.7 2.8 47 34-86 19-65 (82)
152 1xsv_A Hypothetical UPF0122 pr 29.1 61 0.0021 24.2 4.1 46 36-86 25-70 (113)
153 3m9b_A Proteasome-associated A 28.8 47 0.0016 29.3 3.8 40 88-127 57-96 (251)
154 3oja_B Anopheles plasmodium-re 28.6 79 0.0027 29.6 5.7 22 111-132 556-577 (597)
155 3v86_A De novo design helix; c 28.5 64 0.0022 18.5 3.1 22 104-125 5-26 (27)
156 1iuf_A Centromere ABP1 protein 27.5 61 0.0021 25.1 4.0 50 31-80 6-59 (144)
157 2v71_A Nuclear distribution pr 27.1 2E+02 0.0068 24.1 7.3 44 86-129 64-111 (189)
158 3twe_A Alpha4H; unknown functi 27.0 94 0.0032 17.8 3.7 22 109-130 4-25 (27)
159 1nkp_B MAX protein, MYC proto- 26.8 97 0.0033 21.9 4.7 33 93-125 48-80 (83)
160 3lay_A Zinc resistance-associa 26.8 1.5E+02 0.0051 24.4 6.4 24 107-130 114-137 (175)
161 1nlw_A MAD protein, MAX dimeri 26.5 1.1E+02 0.0039 21.7 5.0 33 93-125 48-80 (80)
162 3gp4_A Transcriptional regulat 26.4 2.3E+02 0.0077 22.0 8.2 36 31-79 35-70 (142)
163 2p7v_B Sigma-70, RNA polymeras 26.0 36 0.0012 22.6 2.1 44 36-80 5-48 (68)
164 2x7l_M HIV REV; nuclear export 25.6 40 0.0014 26.3 2.5 36 42-91 15-50 (115)
165 3m91_A Proteasome-associated A 25.3 1.5E+02 0.0052 19.6 6.3 37 89-125 13-49 (51)
166 1go4_E MAD1 (mitotic arrest de 24.2 1.3E+02 0.0046 22.7 5.2 32 93-124 13-44 (100)
167 2hxi_A Putative transcriptiona 24.1 25 0.00084 29.3 1.2 52 33-85 25-77 (241)
168 1x3u_A Transcriptional regulat 24.0 27 0.00093 23.5 1.2 45 36-86 16-60 (79)
169 1rp3_A RNA polymerase sigma fa 23.8 23 0.00078 28.5 0.9 42 36-82 187-228 (239)
170 1ku3_A Sigma factor SIGA; heli 23.8 47 0.0016 22.3 2.4 44 36-80 10-53 (73)
171 3s4r_A Vimentin; alpha-helix, 23.6 1.7E+02 0.0059 21.4 5.7 38 91-128 55-92 (93)
172 3tnu_B Keratin, type II cytosk 23.4 1.7E+02 0.0057 22.4 5.8 8 74-81 9-16 (129)
173 3a2a_A Voltage-gated hydrogen 23.3 1.8E+02 0.0062 19.8 5.3 42 91-132 10-51 (58)
174 3iv1_A Tumor susceptibility ge 23.1 2.2E+02 0.0074 20.6 7.4 42 80-121 13-54 (78)
175 2ve7_C Kinetochore protein NUF 23.0 65 0.0022 27.9 3.7 39 92-130 141-179 (250)
176 2v66_B Nuclear distribution pr 23.0 2.6E+02 0.0088 21.4 7.3 18 111-128 40-57 (111)
177 2zvf_A Alanyl-tRNA synthetase; 22.9 1.3E+02 0.0044 23.6 5.3 27 102-128 28-54 (171)
178 1a93_B MAX protein, coiled coi 22.9 1.4E+02 0.0048 18.4 4.5 24 107-130 8-31 (34)
179 3oa7_A Head morphogenesis prot 22.6 1.8E+02 0.0062 24.7 6.2 36 91-126 36-71 (206)
180 2oto_A M protein; helical coil 22.2 2.7E+02 0.0093 21.8 7.1 20 79-98 23-42 (155)
181 3dtp_E RLC, myosin regulatory 21.5 2.2E+02 0.0076 22.0 6.4 38 34-71 48-90 (196)
182 2zhg_A Redox-sensitive transcr 21.5 1.4E+02 0.0047 23.6 5.1 77 33-130 45-121 (154)
183 2x48_A CAG38821; archeal virus 21.5 36 0.0012 21.4 1.3 36 39-79 18-53 (55)
184 1u78_A TC3 transposase, transp 21.2 59 0.002 24.0 2.7 42 35-81 5-46 (141)
185 2rnj_A Response regulator prot 20.8 28 0.00097 24.6 0.8 47 34-86 27-73 (91)
186 2pmy_A RAS and EF-hand domain- 20.5 25 0.00085 24.4 0.4 45 34-78 18-67 (91)
187 1tty_A Sigma-A, RNA polymerase 20.5 27 0.00091 24.6 0.5 49 36-85 18-66 (87)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=132.59 Aligned_cols=66 Identities=32% Similarity=0.409 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 24 TTTRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 24 ~~~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
...+.++++.|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 344567788899999999999999999999999999999999999999999999999999999854
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-19 Score=130.77 Aligned_cols=64 Identities=34% Similarity=0.635 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 26 TRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 26 ~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
..++.++.|+.||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 4456778899999999999999999999999999999999999999999999999999999753
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.75 E-value=1.1e-18 Score=129.11 Aligned_cols=67 Identities=36% Similarity=0.483 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHHH
Q 025886 26 TRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLER 92 (247)
Q Consensus 26 ~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e~ 92 (247)
.++++++.|+.||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+...
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 3456778899999999999999999999999999999999999999999999999999999866543
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=6.4e-19 Score=130.53 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 26 TRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 26 ~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.+++++|.|+.||.+|+.+||..|..++||+..++.+||..|||++.||+|||||||+|+|+++
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3456778899999999999999999999999999999999999999999999999999999854
No 5
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=5.4e-19 Score=125.38 Aligned_cols=61 Identities=33% Similarity=0.451 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 29 KKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 29 kkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
++++.|+.||..|+.+||..|..++||+..++.+||..|||++.||++||||||+++|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3567899999999999999999999999999999999999999999999999999999853
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.8e-18 Score=128.78 Aligned_cols=63 Identities=29% Similarity=0.587 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQL 90 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~ 90 (247)
.+.++.|+.|+..|+.+||..|..++||+..++..||..|||++.||+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 356778999999999999999999999999999999999999999999999999999998654
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1e-18 Score=126.85 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.+.++.|+.||..|+.+||..|..++||+..++..||..|||++.||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45677899999999999999999999999999999999999999999999999999999853
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=125.60 Aligned_cols=62 Identities=29% Similarity=0.641 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.+.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34677899999999999999999999999999999999999999999999999999999853
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-18 Score=128.96 Aligned_cols=62 Identities=23% Similarity=0.471 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
++.++.|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 46778899999999999999999999999999999999999999999999999999999854
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-18 Score=127.81 Aligned_cols=62 Identities=26% Similarity=0.517 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.+.++.|+.||..|+.+||..|..++||+..++..||..|||++.||+|||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999854
No 11
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=1.2e-18 Score=133.53 Aligned_cols=67 Identities=31% Similarity=0.573 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHHH
Q 025886 26 TRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLER 92 (247)
Q Consensus 26 ~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e~ 92 (247)
.+.++++.|+.||..|+.+||..|..++||+..++..||..|||++.||+|||||||+|+|+...+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 3456778899999999999999999999999999999999999999999999999999999865543
No 12
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=125.52 Aligned_cols=63 Identities=27% Similarity=0.454 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
..+.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345677899999999999999999999999999999999999999999999999999999853
No 13
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.73 E-value=1.8e-18 Score=123.18 Aligned_cols=59 Identities=29% Similarity=0.598 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 30 KCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+++|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 56778999999999999999999999999999999999999999999999999999984
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.73 E-value=1.7e-18 Score=122.47 Aligned_cols=58 Identities=40% Similarity=0.672 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 30 KCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
+++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5678999999999999999999999999999999999999999999999999999986
No 15
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2.8e-18 Score=124.58 Aligned_cols=61 Identities=41% Similarity=0.674 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 29 KKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 29 kkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
+.++.|++||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4556789999999999999999999999999999999999999999999999999999853
No 16
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-18 Score=125.45 Aligned_cols=62 Identities=19% Similarity=0.384 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
++.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999853
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.72 E-value=5.6e-18 Score=125.25 Aligned_cols=64 Identities=30% Similarity=0.452 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQL 90 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~ 90 (247)
.++.++.|+.||..|+.+||..|..++||+..++..||..|||++.||+|||||||+++|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3456778999999999999999999999999999999999999999999999999999998654
No 18
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.72 E-value=2.9e-18 Score=127.79 Aligned_cols=63 Identities=29% Similarity=0.554 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
++++++.|+.|+..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 456778899999999999999999999999999999999999999999999999999999854
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=2.9e-18 Score=119.81 Aligned_cols=57 Identities=33% Similarity=0.538 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 31 CKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 20
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=2.7e-18 Score=128.53 Aligned_cols=61 Identities=16% Similarity=0.323 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFEN----ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~----~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
.++++|.|+.||.+|+..||..|+. ++||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467788999999999999999999 999999999999999999999999999999999885
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-18 Score=125.28 Aligned_cols=61 Identities=34% Similarity=0.519 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
.+.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4567789999999999999999999999999999999999999999999999999999974
No 22
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=1.7e-18 Score=124.32 Aligned_cols=61 Identities=30% Similarity=0.548 Sum_probs=57.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 29 KKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 29 kkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
++++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+++|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4677899999999999999999999999999999999999999999999999999999854
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=5.1e-18 Score=122.65 Aligned_cols=60 Identities=32% Similarity=0.509 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 30 KCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
+++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 467899999999999999999999999999999999999999999999999999999854
No 24
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-18 Score=124.04 Aligned_cols=63 Identities=32% Similarity=0.619 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.+++++.|+.|+..|+.+||..|..++||+..++..||..|||++.||++||||||+++|++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 446678899999999999999999999999999999999999999999999999999999853
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=6.3e-18 Score=123.89 Aligned_cols=61 Identities=26% Similarity=0.459 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
.+.++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999985
No 26
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.71 E-value=2.6e-18 Score=121.23 Aligned_cols=59 Identities=37% Similarity=0.553 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
++.++.|+.|+..|+.+||..|..++||+..++..||..|||++.||++||||||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46678899999999999999999999999999999999999999999999999999975
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.70 E-value=3.8e-18 Score=123.46 Aligned_cols=60 Identities=32% Similarity=0.663 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 30 KCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
+++.|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 467789999999999999999999999999999999999999999999999999999854
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-18 Score=127.39 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENE----TRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~----~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.+++++.|+.||.+|+.+||..|..+ +||+..++.+||..|||++.||+|||||||+|+|+..
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 35667889999999999999999999 9999999999999999999999999999999999843
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=5.6e-18 Score=119.40 Aligned_cols=58 Identities=28% Similarity=0.520 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 31 CKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4678999999999999999999999999999999999999999999999999999873
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=6.3e-18 Score=122.17 Aligned_cols=60 Identities=35% Similarity=0.551 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 30 KCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
+++.|+.||..|+.+||..|..++||+...+..||..|||++.+|++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 467789999999999999999999999999999999999999999999999999999854
No 31
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=5.2e-18 Score=127.15 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFEN-----ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~-----~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
..+++|.|+.||.+|+..|| .|.. ++||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34677889999999999999 7999 999999999999999999999999999999999875
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.70 E-value=6.2e-18 Score=126.36 Aligned_cols=62 Identities=29% Similarity=0.553 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.++++.|+.||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45677899999999999999999999999999999999999999999999999999999854
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=6.5e-18 Score=117.48 Aligned_cols=57 Identities=39% Similarity=0.533 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 30 KCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
+++.|+.|+..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 356789999999999999999999999999999999999999999999999999975
No 34
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=3.2e-18 Score=123.61 Aligned_cols=61 Identities=23% Similarity=0.580 Sum_probs=57.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 29 KKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 29 kkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
++++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+++|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4567899999999999999999999999999999999999999999999999999999864
No 35
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=9.3e-18 Score=129.14 Aligned_cols=64 Identities=27% Similarity=0.425 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLE 91 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e 91 (247)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.++.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 4456778999999999999999999999999999999999999999999999999999997643
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.69 E-value=9.6e-18 Score=126.93 Aligned_cols=62 Identities=31% Similarity=0.619 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
..+.++.|+.||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45667889999999999999999999999999999999999999999999999999999974
No 37
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.4e-17 Score=121.45 Aligned_cols=59 Identities=24% Similarity=0.538 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 31 CKNKRRFSDEQIRSLELMFEN-ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F~~-~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.++|+.|+..|+.+||..|.. ++||+..++..||..|||+++||++||||||+++|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356889999999999999996 99999999999999999999999999999999999854
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.7e-17 Score=121.45 Aligned_cols=59 Identities=24% Similarity=0.503 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 31 CKNKRRFSDEQIRSLELMFEN-ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F~~-~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.++|+.||..|+.+||..|.. ++||+..++..||..|||+++||++||||||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 466899999999999999995 99999999999999999999999999999999999854
No 39
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=116.40 Aligned_cols=54 Identities=35% Similarity=0.635 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 35 RRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 35 t~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999984
No 40
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=122.59 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 32 KNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 32 r~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+++|++.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 3466799999999999999999999999999999999999999999999999999854
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.68 E-value=9.7e-18 Score=118.16 Aligned_cols=57 Identities=28% Similarity=0.611 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 33 NKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 33 ~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.|+.||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999854
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=119.52 Aligned_cols=60 Identities=30% Similarity=0.459 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHH
Q 025886 31 CKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQL 90 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~ 90 (247)
++.|+.||..|+.+||..|..++||+..++..||..|||++.||++||||||+++|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 577899999999999999999999999999999999999999999999999999998643
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.9e-17 Score=127.47 Aligned_cols=63 Identities=29% Similarity=0.486 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
..+.++.|+.||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 346677899999999999999999999999999999999999999999999999999999864
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=2.9e-17 Score=120.01 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFEN---ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~---~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
++.++.|+.|+..|+.+||..|.. ++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 456777899999999999999987 99999999999999999999999999999999999854
No 45
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=1.6e-17 Score=123.72 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHH
Q 025886 33 NKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQL 90 (247)
Q Consensus 33 ~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~ 90 (247)
+|..||.+|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+.++
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999998543
No 46
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3.7e-17 Score=125.45 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------CCccceeeeccchhhHHhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELG---------------LQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~Lg---------------Ls~rQVkiWFQNRRaK~Krkq 89 (247)
.++++|.|+.|+..|+.+||..|+.++||+..++.+||..|+ |++.+|++||||||+++|++.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 356778899999999999999999999999999999999999 999999999999999999854
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=2.9e-17 Score=120.12 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 30 KCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.++.|+.||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 456789999999999999999999999999999999999999999999999999999854
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-17 Score=120.82 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 31 CKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.+.|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 44588999999999999999999999999999999999999999999999999999853
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=3.7e-17 Score=119.43 Aligned_cols=61 Identities=30% Similarity=0.452 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHH
Q 025886 31 CKNKRRFSDEQIRSLELMF---ENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLE 91 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F---~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e 91 (247)
++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5678999999999999999 899999999999999999999999999999999999986543
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=4.4e-17 Score=116.05 Aligned_cols=58 Identities=29% Similarity=0.421 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 30 KCKNKRRFSDEQIRSLELMF---ENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F---~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
.++.|+.|+..|+.+|+..| ..++||+..++..||..|||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 45778999999999999999 89999999999999999999999999999999999986
No 51
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=9.1e-17 Score=113.03 Aligned_cols=55 Identities=29% Similarity=0.472 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 33 NKRRFSDEQIRSLELMFEN---ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 33 ~Rt~fT~~Ql~~LE~~F~~---~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
++++|+..|+.+||..|.. ++||+..++..||.++||++.||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3678999999999999999 999999999999999999999999999999999986
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=119.03 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFEN---ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~---~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.++++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 356677899999999999999987 59999999999999999999999999999999998754
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.63 E-value=1.2e-16 Score=120.29 Aligned_cols=61 Identities=30% Similarity=0.452 Sum_probs=56.5
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHH
Q 025886 31 CKNKRRFSDEQIRSLELMF---ENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLE 91 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F---~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e 91 (247)
+|.|+.|+..|+.+|+..| ..++||+..++..||..|||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5678999999999999999 899999999999999999999999999999999999986543
No 54
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.4e-16 Score=121.82 Aligned_cols=53 Identities=26% Similarity=0.388 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
+||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 79999999999999999999999999999999999999999999999999874
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=3.9e-17 Score=119.89 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 31 CKNKRRFSDEQIRSLELMF-ENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F-~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
.+.+.+++..|+.+||..| ..++||+..++.+||..|||+++||+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3456678899999999999 999999999999999999999999999999999999974
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.62 E-value=2e-16 Score=119.43 Aligned_cols=60 Identities=28% Similarity=0.423 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFEN---ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~---~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
.+++++|++|+..|+.+||..|.. ++||+..++..||..+||++.||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345566889999999999999999 999999999999999999999999999999999873
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.62 E-value=1.1e-16 Score=132.12 Aligned_cols=62 Identities=27% Similarity=0.451 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
.++++|.|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667789999999999999999999999999999999999999999999999999999974
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.61 E-value=2.7e-16 Score=130.03 Aligned_cols=63 Identities=29% Similarity=0.479 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 25 TTRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 25 ~~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
..+.+++|.|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 344567788999999999999999999999999999999999999999999999999999986
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4e-16 Score=118.71 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 35 RRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 35 t~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
..||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3489999999999999999999999999999999999999999999999998743
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.61 E-value=1.4e-16 Score=119.52 Aligned_cols=59 Identities=27% Similarity=0.424 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHH
Q 025886 32 KNKRRFSDEQIRSLELMFEN---ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQL 90 (247)
Q Consensus 32 r~Rt~fT~~Ql~~LE~~F~~---~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~ 90 (247)
+++++|+..|+.+||..|.. ++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 44566999999999999999 999999999999999999999999999999999998654
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.61 E-value=2e-16 Score=132.07 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
.+++|.|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4667889999999999999999999999999999999999999999999999999999974
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.61 E-value=1.2e-16 Score=134.29 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.++++|.|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 456778899999999999999999999999999999999999999999999999999999865
No 63
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.1e-16 Score=121.09 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh---------------------CCCccceeeeccchhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKEL---------------------GLQPRQVAIWFQNKRARW 85 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~L---------------------gLs~rQVkiWFQNRRaK~ 85 (247)
.++++|.|+.|++.|+.+||..|+.++||+..+|++||..| +|++.+|+|||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35677889999999999999999999999999999999999 799999999999999999
Q ss_pred hhHH
Q 025886 86 KSKQ 89 (247)
Q Consensus 86 Krkq 89 (247)
|+++
T Consensus 83 kr~~ 86 (102)
T 2da6_A 83 AFRQ 86 (102)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9854
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-16 Score=115.13 Aligned_cols=57 Identities=40% Similarity=0.585 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHH
Q 025886 34 KRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQL 90 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~ 90 (247)
-..+|..|+..||..|..++||+..++.+||..|||+++||+|||||||+|+|+++.
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 457899999999999999999999999999999999999999999999999998653
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.59 E-value=2e-16 Score=123.10 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------hC---CCccceeeeccchhhH
Q 025886 26 TRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKE------------------LG---LQPRQVAIWFQNKRAR 84 (247)
Q Consensus 26 ~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~------------------Lg---Ls~rQVkiWFQNRRaK 84 (247)
.+++++|.|+.|+..|+.+||..|..++||+...+.+||.. || |++.+|++||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34567788999999999999999999999999999999999 88 9999999999999999
Q ss_pred HhhHHH
Q 025886 85 WKSKQL 90 (247)
Q Consensus 85 ~Krkq~ 90 (247)
.|+++.
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 988653
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.58 E-value=5.7e-16 Score=112.39 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 37 FSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 37 fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
.|.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 67
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=8.5e-16 Score=112.12 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFEN-ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~-~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
.+.++|.|+.|+.+|+.+|+..|+. ++||+...+..||.+|||++++|+|||||||--.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467888999999999999999999 99999999999999999999999999999996443
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=3e-16 Score=113.29 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=46.6
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 39 DEQIRSLELMF-ENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 39 ~~Ql~~LE~~F-~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
+.|+.+||..| ..++||+..++.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45899999999 568999999999999999999999999999999999863
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.56 E-value=8.2e-16 Score=127.88 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSK 88 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krk 88 (247)
.+++|+|+.|+..|+..||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4566789999999999999999999999999999999999999999999999999999973
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.1e-16 Score=110.51 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
.++..|+..||..|..++||+..++.+||..|||+++||+|||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999999876
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=1.3e-15 Score=127.22 Aligned_cols=63 Identities=27% Similarity=0.401 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHH
Q 025886 27 RKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQ 89 (247)
Q Consensus 27 ~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq 89 (247)
..+++|.|+.||..|+.+||..|..++||+...+..||..|||+++||+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 456678899999999999999999999999999999999999999999999999999999754
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=2.2e-15 Score=108.92 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHHHHH
Q 025886 35 RRFSDEQIRSLELMFE---NETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDY 94 (247)
Q Consensus 35 t~fT~~Ql~~LE~~F~---~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e~e~ 94 (247)
.+|+.+|+.+|+..|. .++||+..++.+||..+||++.||++||||||+|+|+..+++..
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 4799999999999999 99999999999999999999999999999999999987665543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.38 E-value=5e-14 Score=121.53 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCccceeeeccchhhH
Q 025886 26 TRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELG---------------------LQPRQVAIWFQNKRAR 84 (247)
Q Consensus 26 ~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~Lg---------------------Ls~rQVkiWFQNRRaK 84 (247)
..++++|.|+.|++.|+.+||..|..++||+...|.+||..|+ |++.+|++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3466788899999999999999999999999999999999999 9999999999999999
Q ss_pred Hhh
Q 025886 85 WKS 87 (247)
Q Consensus 85 ~Kr 87 (247)
.|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 874
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=99.91 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHH
Q 025886 34 KRRFSDEQIRSLELMFEN---ETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLE 91 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~---~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e 91 (247)
...|+.+++.+|+..|.. ++||+..++.+||.++||++.||++||+|+|+|.++..++
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 346899999999999987 9999999999999999999999999999999999875443
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=114.29 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCccceeeeccchhh
Q 025886 25 TTRKKKCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELG---------------------LQPRQVAIWFQNKRA 83 (247)
Q Consensus 25 ~~~kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~Lg---------------------Ls~rQVkiWFQNRRa 83 (247)
+.+++.+|.|+.|++.|+.+|+..|..++||+..+|++||..|| |++.||++||||||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34567788999999999999999999999999999999999998 899999999999998
Q ss_pred HH
Q 025886 84 RW 85 (247)
Q Consensus 84 K~ 85 (247)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=94.59 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHH
Q 025886 39 DEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARW 85 (247)
Q Consensus 39 ~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~ 85 (247)
.+|+.+|+.+|..+++|+..++..||..+||+.+.|+|||||||+..
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999999999999999743
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.19 E-value=3.1e-12 Score=117.16 Aligned_cols=55 Identities=35% Similarity=0.539 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 32 KNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 32 r~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
+.++.++..|+..||+.|+.++||+..+|.+||.+|||+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4467899999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.72 E-value=5.1e-10 Score=72.35 Aligned_cols=26 Identities=42% Similarity=1.017 Sum_probs=21.5
Q ss_pred cceeeeccchhhHHhhHHHHHHHHHH
Q 025886 72 RQVAIWFQNKRARWKSKQLERDYNIL 97 (247)
Q Consensus 72 rQVkiWFQNRRaK~Krkq~e~e~~~l 97 (247)
+||+|||||||+|||+.+.+.....+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~ 26 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDII 26 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHH
Confidence 69999999999999998877655443
No 79
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=91.37 E-value=0.74 Score=34.49 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=34.4
Q ss_pred hhHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 025886 82 RARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPR 134 (247)
Q Consensus 82 RaK~Krkq~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~~~ 134 (247)
|.+.|+++.+. .+......|..++..|+.+++.|..|+..|+.+|.....
T Consensus 29 rSR~krk~r~~---e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 29 KSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 45555544333 334566778888899999999999999999998876544
No 80
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=90.90 E-value=0.43 Score=35.06 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=23.0
Q ss_pred hhHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025886 82 RARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELL 129 (247)
Q Consensus 82 RaK~Krkq~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l 129 (247)
|.+.|+++.+.+. ......|..++..|+.+++.|..++..|+.+|
T Consensus 29 rSR~krk~r~~e~---~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 29 KSRDKAKMRNLET---QHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554433332 33344555555555555555555555555544
No 81
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.23 E-value=0.096 Score=37.93 Aligned_cols=39 Identities=28% Similarity=0.447 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccc
Q 025886 42 IRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQN 80 (247)
Q Consensus 42 l~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQN 80 (247)
..+|+.+|...+.+.......|+.+..|+..||+-||--
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999953
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.85 E-value=5.3 Score=27.30 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 92 RDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 92 ~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
.....+......|..++..|..+...|..++..|+.+|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566667777888888888888888888888887763
No 83
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=83.57 E-value=5.6 Score=27.48 Aligned_cols=40 Identities=25% Similarity=0.239 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 91 ERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 91 e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
......|....+.|...+..|..+...|..++..|+..|.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888888888888888888887765
No 84
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.58 E-value=7.6 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 91 ERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 91 e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
......+......|..++..|..+...|..|+..|+++|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667777888888888888888888888888775
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=80.52 E-value=5 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 91 ERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 91 e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
+.....|......|...+..+..||+.|+.++..|...+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666667777788888888888777664
No 86
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=79.62 E-value=3.2 Score=28.98 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=23.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 99 ANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 99 ~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
.....|......|..+|..|..++..|++++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666778888888888888888888764
No 87
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.01 E-value=4.9 Score=27.18 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=22.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025886 99 ANFNNLASRFEALKKEKQALVIQLQKTNELLQN 131 (247)
Q Consensus 99 ~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~ 131 (247)
..++.|..++..|+..+..|..++..|+.+|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666667777777777777777777777653
No 88
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=75.98 E-value=4.9 Score=27.61 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=15.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025886 95 NILQANFNNLASRFEALKKEKQALVIQLQKTNELL 129 (247)
Q Consensus 95 ~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l 129 (247)
..|......|..++..|..+...|..++..|+.+|
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555444444443
No 89
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=72.36 E-value=0.99 Score=32.85 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCCccceeeecc
Q 025886 34 KRRFSDEQIRSLELMFENE-TRLEPRKKLQLAKELGLQPRQVAIWFQ 79 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~~-~~ps~~~r~eLA~~LgLs~rQVkiWFQ 79 (247)
|..||+++....-..+... .. ...++|..+|+++..|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3568888776555555322 22 366899999999999999974
No 90
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=71.27 E-value=12 Score=25.19 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=26.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 98 QANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 98 k~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
+...+.|......|..||..|..++..|++.+.
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666777888899999999999988887653
No 91
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=70.60 E-value=2.1 Score=28.54 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeecc
Q 025886 34 KRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQ 79 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQ 79 (247)
+..|+++....+...+... ........++|..+|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4578888776665444433 22112256899999999999999964
No 92
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=69.82 E-value=13 Score=27.83 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=41.7
Q ss_pred CCCccceeeeccchhhH-------HhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025886 68 GLQPRQVAIWFQNKRAR-------WKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNK 132 (247)
Q Consensus 68 gLs~rQVkiWFQNRRaK-------~Krkq~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~ 132 (247)
||+..+|..+=|-||.- .-+.+...+...|......|..+.+.|..|+..+..+...++.+++..
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555554444321 112233445566667777788888888888888888888888877643
No 93
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=67.76 E-value=5.5 Score=28.52 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=30.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeec
Q 025886 31 CKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWF 78 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWF 78 (247)
++.+..++.++....-..+.. .. ...+||+.+|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHH
Confidence 345668888886555555542 22 25678999999999999985
No 94
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=65.07 E-value=13 Score=22.94 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 103 NLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 103 ~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
.|....+.|-.+|..|..++..|++++.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3555677888899999999999999874
No 95
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=60.95 E-value=7.1 Score=29.38 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhH
Q 025886 33 NKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRAR 84 (247)
Q Consensus 33 ~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK 84 (247)
+|..+|.++...+-..+..+..+. ..+||+.+|+++..|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 467899999877777775555443 2368999999999999998776543
No 96
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=60.31 E-value=15 Score=22.68 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.|..+|..|..|+..|++.+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 455677888899999999999998874
No 97
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=58.54 E-value=21 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.+-.+|..|..|+..|++++.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 445677788899999999999998874
No 98
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=58.01 E-value=6.2 Score=23.71 Aligned_cols=40 Identities=10% Similarity=0.245 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccc
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQN 80 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQN 80 (247)
.++..+...+...+... . ...+||+.||++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 56777765555555432 2 2567899999999999988753
No 99
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.00 E-value=18 Score=24.36 Aligned_cols=30 Identities=20% Similarity=0.497 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 025886 93 DYNILQANFNNLASRFEALKKEKQALVIQL 122 (247)
Q Consensus 93 e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~ 122 (247)
+++.|+.....|...++.|.++++.|.+++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 100
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=56.58 E-value=19 Score=25.58 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025886 89 QLERDYNILQANFNNLASRFEALKKEKQALVIQLQKT 125 (247)
Q Consensus 89 q~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l 125 (247)
.++.....+......|..++..|+.++..|..+|..+
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555566666666677777777777777777777654
No 101
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=56.07 E-value=24 Score=21.77 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.+-.+|..|..|+..|++++.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 455677788899999999999998874
No 102
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=55.10 E-value=9.8 Score=25.82 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=17.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025886 100 NFNNLASRFEALKKEKQALVIQLQKTNELL 129 (247)
Q Consensus 100 ~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l 129 (247)
..+.+...++.+.+|+..|+.++..|+++|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445556677777777777777777776543
No 103
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.02 E-value=47 Score=22.75 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=23.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 95 NILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 95 ~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
..-+.....|..+...|..+|..|..++..|+..+.
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777777777777777777777766554
No 104
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=53.41 E-value=3.7 Score=25.32 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchh
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKR 82 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRR 82 (247)
.++.++...+...+... . ...+||..+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35555555555555433 2 356789999999999999986543
No 105
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=53.26 E-value=45 Score=22.48 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=24.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 96 ILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 96 ~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
.-+.....|....+.+..+|..|..++..|+..+.
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777776654
No 106
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.64 E-value=58 Score=23.88 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025886 111 LKKEKQALVIQLQKTNELL 129 (247)
Q Consensus 111 l~~E~~~L~~e~~~l~~~l 129 (247)
+..+|+.|+.+...-++.|
T Consensus 53 L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 107
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=48.80 E-value=56 Score=21.68 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025886 91 ERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNK 132 (247)
Q Consensus 91 e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~ 132 (247)
++....+|..++.|......|+.-...+..|+..|+..|+..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHc
Confidence 345667888888888888888888888888888888888754
No 108
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.74 E-value=61 Score=22.06 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=27.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 96 ILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 96 ~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
.-+.....|....+.|..+|..|..++..|+..+.
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888888888877665
No 109
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=48.70 E-value=36 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.|..++..|..++..|++++.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 455667778888888888888888875
No 110
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.10 E-value=59 Score=25.78 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 89 QLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 89 q~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
...++...++.....+....+.+.++++.|+.++..|+..+.
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666776666677777777777777777666666554
No 111
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.16 E-value=66 Score=21.72 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 025886 96 ILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPR 134 (247)
Q Consensus 96 ~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~~~ 134 (247)
.-+.....|......|..+|..|..++..|+..+.....
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677888999999999999999999999998876543
No 112
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=45.93 E-value=32 Score=25.92 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhh
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKS 87 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Kr 87 (247)
.+++.+..++...|-... ...++|..+|+++..|+.+...-|.+.+.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888887754332 24689999999999999887655554443
No 113
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=45.79 E-value=34 Score=21.13 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.+-.+|..|..|+..|++.|.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 445667788889999999999998874
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.03 E-value=15 Score=26.16 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHH
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARW 85 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~ 85 (247)
.+++.+..+|...|-.. ....+||..||++...|+.+...-|.+.
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46777777777655322 2356899999999999987654433333
No 115
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=44.83 E-value=32 Score=23.19 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 025886 100 NFNNLASRFEALKKEKQALVIQLQ 123 (247)
Q Consensus 100 ~~~~L~~~~~~l~~E~~~L~~e~~ 123 (247)
.|+.|..+.+.|++||-.|+.|+.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345555555555555555555444
No 116
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=44.51 E-value=36 Score=21.02 Aligned_cols=27 Identities=15% Similarity=0.366 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.+-.++..|..|+..|++++.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 445667788889999999999998874
No 117
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.86 E-value=48 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.+..++..|..++..|++++.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 455667777888888888888888774
No 118
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=43.44 E-value=33 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=22.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 99 ANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 99 ~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
..+..|..++..++++|++|+.+..+..+++.
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556667777777777777777777766664
No 119
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=43.15 E-value=51 Score=20.32 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.|-.+|..|..++..|++.+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 455667788888889999999988774
No 120
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.54 E-value=58 Score=24.01 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=33.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 025886 95 NILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPS 141 (247)
Q Consensus 95 ~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~~~~~~~sp~ 141 (247)
..-+.....+......|..||..|+.++..|+..+......+.+-|.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 44455567778888888899999999999988888877665555554
No 121
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.32 E-value=44 Score=24.16 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=35.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 025886 94 YNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSP 140 (247)
Q Consensus 94 ~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~~~~~~~sp 140 (247)
...-+.....+......|..||..|..++..|+..+......+.+.|
T Consensus 31 R~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 31 RDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34445666788889999999999999999999999887766555555
No 122
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=39.71 E-value=8.1 Score=25.55 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhH
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRAR 84 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK 84 (247)
.+++.+..+|...|-.. ....++|..+|+++..|+.+...-+.+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 47888888888776332 234689999999999998765443333
No 123
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.57 E-value=69 Score=23.62 Aligned_cols=44 Identities=5% Similarity=0.082 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccccc
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQNKPRREDQSPSERQCCG 147 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~~~~~~~~~sp~~~~~~~ 147 (247)
+......+......+..++..++..+.........||-|++...
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~ 58 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELT 58 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCC
Confidence 33344444445555555555555555444333445666555443
No 124
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.22 E-value=67 Score=22.76 Aligned_cols=32 Identities=6% Similarity=0.035 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025886 101 FNNLASRFEALKKEKQALVIQLQKTNELLQNK 132 (247)
Q Consensus 101 ~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~ 132 (247)
...|......++.+++.|..++..|+..|...
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677778888888888888888888654
No 125
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.82 E-value=88 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025886 100 NFNNLASRFEALKKEKQALVIQLQKTNELLQNK 132 (247)
Q Consensus 100 ~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~ 132 (247)
.+..|..+.+.|..|++.|+.++..|.-+|.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888888888888888888887643
No 126
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=37.81 E-value=1.2e+02 Score=22.23 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025886 90 LERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQN 131 (247)
Q Consensus 90 ~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~ 131 (247)
+..+....+...-.+.......+..|+.|..++.+|+++|..
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666677777888889999999999988875
No 127
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.36 E-value=63 Score=25.38 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHHHHHHHHHHhhhhhHHHHHHH
Q 025886 32 KNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEAL 111 (247)
Q Consensus 32 r~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e~e~~~lk~~~~~L~~~~~~l 111 (247)
...+.|+..++..|... ...+.+|++-.+|+..+...+.... ........ |......+
T Consensus 50 ~g~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~-------l~~~~~~l 107 (148)
T 3gpv_A 50 KGDRIFNEEALKYLEMI-------------LCLKNTGMPIQKIKQFIDWSMEGDS--TILHRLKL-------MKQQEANV 107 (148)
T ss_dssp TCCEEBCHHHHHHHHHH-------------HHHHTTTCCHHHHHHHHHHHHHCGG--GHHHHHHH-------HHHHHHHH
T ss_pred CCCeecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHhhhcCCC--CHHHHHHH-------HHHHHHHH
Confidence 44667888888888532 2236677777776666553322111 11111222 33344455
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025886 112 KKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 112 ~~E~~~L~~e~~~l~~~l~ 130 (247)
.++...|...+..|...+.
T Consensus 108 ~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 108 LQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554
No 128
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.87 E-value=1.2e+02 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 102 NNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 102 ~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
..|....+.++.|+..|+.++..|+++..
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777777776654
No 129
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=35.52 E-value=17 Score=26.32 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 35 RRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 35 t~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
..+++.+..+|...++-- ...+||..||+++..|+....+-+.|.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 468999999998864322 2468999999999999876654444433
No 130
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=35.51 E-value=9.8 Score=31.01 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=33.7
Q ss_pred CCCCCCCCHHHH-HHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHH
Q 025886 31 CKNKRRFSDEQI-RSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARW 85 (247)
Q Consensus 31 rr~Rt~fT~~Ql-~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~ 85 (247)
.+.|...+.+++ ......|....| .......||+.+|++..-|...|.+|-.-.
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~-~~~s~~~IA~~aGvs~~tlY~~F~~K~~L~ 73 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGL-DGVSTRRLAKRLGVEQPSLYWYFRTKRDLL 73 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCG-GGCCHHHHHHHHTSCTHHHHTTCSSHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 344455565543 344455666554 333467899999999999999999865544
No 131
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=34.98 E-value=24 Score=26.05 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhH
Q 025886 34 KRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRAR 84 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK 84 (247)
...+|+.+..+|...++-- ...+||..||+++..|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4569999999998765322 23789999999999998766543333
No 132
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=34.96 E-value=1.2e+02 Score=21.76 Aligned_cols=46 Identities=7% Similarity=0.177 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCC--ccceeeec
Q 025886 33 NKRRFSDEQIRSLELMFEN-----ETRLEPRKKLQLAKELGLQ--PRQVAIWF 78 (247)
Q Consensus 33 ~Rt~fT~~Ql~~LE~~F~~-----~~~ps~~~r~eLA~~LgLs--~rQVkiWF 78 (247)
....++.+++..|...|.. +.+.+..+...+.+.+|.. ..+|+.+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3457899999999999975 4479999999988998854 45555444
No 133
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=34.24 E-value=27 Score=25.33 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHH-hhc-CCCC-HHHHHHHHHHhCCCccceeeec
Q 025886 34 KRRFSDEQIRSLELMF-ENE-TRLE-PRKKLQLAKELGLQPRQVAIWF 78 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F-~~~-~~ps-~~~r~eLA~~LgLs~rQVkiWF 78 (247)
+..||+++....-..+ ... .+++ .....++|..+|+++..|..|.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHH
Confidence 3468888776544444 322 1222 2457789999999999998884
No 134
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.01 E-value=24 Score=25.47 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=29.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeecc
Q 025886 30 KCKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQ 79 (247)
Q Consensus 30 krr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQ 79 (247)
.......+|+.+..+|...++ .+ ...+||..||++++.|+....
T Consensus 23 ~~~~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 23 SQKEQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp ------CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 334456799999999987762 22 357899999999999886543
No 135
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=33.83 E-value=10 Score=29.96 Aligned_cols=40 Identities=8% Similarity=0.034 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhh
Q 025886 43 RSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRA 83 (247)
Q Consensus 43 ~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRa 83 (247)
......|....|- ......||+..|++..-|-..|.+|-.
T Consensus 35 ~aa~~lf~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 35 NAAIEVLAREGAR-GLTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHTCTT-TCCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHhChh-hccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 3444557666653 445778999999999999999998744
No 136
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=33.45 E-value=78 Score=24.18 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCcc
Q 025886 34 KRRFSDEQIRSLELMFEN-----ETRLEPRKKLQLAKELGLQPR 72 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~-----~~~ps~~~r~eLA~~LgLs~r 72 (247)
+..+|.+|+..|...|.. +.+++..+...+.+.||..+.
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 467999999999999975 447899998888899987664
No 137
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.80 E-value=86 Score=19.17 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.+-.++..|..|+..|++++.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 445567777888888889999888773
No 138
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.75 E-value=1.4e+02 Score=21.72 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Q 025886 91 ERDYNILQANFNNLASRFEALKKEKQA-------LVIQLQKTNELLQ 130 (247)
Q Consensus 91 e~e~~~lk~~~~~L~~~~~~l~~E~~~-------L~~e~~~l~~~l~ 130 (247)
...+..++-.++.|+..+..+..+++. |..++..|++...
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444 6667776666543
No 139
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.61 E-value=1.1e+02 Score=20.34 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=22.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 96 ILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 96 ~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
.++.....|...+..|......-+.|+.+|++.|.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666677777666666777777776664
No 140
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=31.85 E-value=91 Score=19.19 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 104 LASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
|....+.+-.++..|..|+..|+++|-
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 445667777888889999999998874
No 141
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=31.57 E-value=30 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCccceeeeccchh
Q 025886 59 KKLQLAKELGLQPRQVAIWFQNKR 82 (247)
Q Consensus 59 ~r~eLA~~LgLs~rQVkiWFQNRR 82 (247)
-...+|..||+++.+++.|+-..|
T Consensus 71 ~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 71 FVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHhCCCcccEEEEEeecC
Confidence 357789999999999999986444
No 142
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.75 E-value=1.7e+02 Score=22.23 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025886 92 RDYNILQANFNNLASRFEALKKEKQALVIQLQKTNE 127 (247)
Q Consensus 92 ~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~ 127 (247)
.+.+.++............|..|.+.|..+++.|..
T Consensus 51 ~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 51 DENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333334444555555555555555443
No 143
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.46 E-value=91 Score=22.28 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=22.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 101 FNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 101 ~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
+..|......+..|++.|+.++..|+..|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777788888888888877765
No 144
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.44 E-value=40 Score=22.66 Aligned_cols=38 Identities=5% Similarity=0.136 Sum_probs=20.9
Q ss_pred HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 025886 84 RWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQ 121 (247)
Q Consensus 84 K~Krkq~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e 121 (247)
-+....-..+...+-..+..|..++..|+.++..|..+
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555556666666666666666666666666544
No 145
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=30.39 E-value=22 Score=23.53 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHH
Q 025886 34 KRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARW 85 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~ 85 (247)
-..+++.+..+|...+ ..+ ...++|..+|+++..|..+..+-+.+.
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4568999999998743 222 356799999999999987665434333
No 146
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.25 E-value=0.92 Score=36.71 Aligned_cols=30 Identities=0% Similarity=-0.179 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCH
Q 025886 28 KKKCKNKRRFSDEQIRSLELMFENETRLEP 57 (247)
Q Consensus 28 kkkrr~Rt~fT~~Ql~~LE~~F~~~~~ps~ 57 (247)
++.+|.|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788899999999999999999998863
No 147
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.01 E-value=94 Score=27.30 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=21.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025886 97 LQANFNNLASRFEALKKEKQALVIQLQKTNELLQNKP 133 (247)
Q Consensus 97 lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~~ 133 (247)
++...+.|...++.|..+...++.|+..|++++.+..
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555566666666666666666666655443
No 148
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.97 E-value=1e+02 Score=22.35 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 103 NLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 103 ~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
.|......+..+++.|..++..|+..|+
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555554
No 149
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.94 E-value=32 Score=25.74 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccc
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQN 80 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQN 80 (247)
.+++.+..+|. .|- ......+||..||+++..|+.....
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666666665 332 2224578999999999999876543
No 150
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=29.64 E-value=39 Score=24.29 Aligned_cols=35 Identities=26% Similarity=0.617 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHH
Q 025886 42 IRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQL 90 (247)
Q Consensus 42 l~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~ 90 (247)
+.++.-.|+.|+||++.--.. | -.|||.+|+..|.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHH
Confidence 445566689999987541111 1 1589999987654
No 151
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=29.29 E-value=37 Score=23.68 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 34 KRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
-..+++.+..+|...+. . ....+||..||++...|+....+-+.|.+
T Consensus 19 ~~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 34689999999988432 2 23568999999999999876654444443
No 152
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.06 E-value=61 Score=24.22 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
.+++.+..++...|-.. ....++|..+|+++..|+.+...-|.+.+
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 46777777777665322 23468999999999999987765444444
No 153
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.77 E-value=47 Score=29.26 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025886 88 KQLERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNE 127 (247)
Q Consensus 88 kq~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~ 127 (247)
+.+..+...+......|......+++|...|+.|+.+|+.
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3556777888888888999999999999999999988765
No 154
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.56 E-value=79 Score=29.61 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 025886 111 LKKEKQALVIQLQKTNELLQNK 132 (247)
Q Consensus 111 l~~E~~~L~~e~~~l~~~l~~~ 132 (247)
.++..+.++.++..++.++++.
T Consensus 556 ~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 556 KRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 155
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=28.51 E-value=64 Score=18.46 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 025886 104 LASRFEALKKEKQALVIQLQKT 125 (247)
Q Consensus 104 L~~~~~~l~~E~~~L~~e~~~l 125 (247)
|..+...++-|...|+.++..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3445555666666666665544
No 156
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=27.45 E-value=61 Score=25.10 Aligned_cols=50 Identities=12% Similarity=0.262 Sum_probs=34.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHH-HHHh--CCCccceeeeccc
Q 025886 31 CKNKRRFSDEQIRSLELMF-ENETRLEPRKKLQL-AKEL--GLQPRQVAIWFQN 80 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F-~~~~~ps~~~r~eL-A~~L--gLs~rQVkiWFQN 80 (247)
+++|.++|.+|...+-..+ +.++.....+.... ..++ +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 4567899999999998888 66776655433332 2277 6777788877654
No 157
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.08 E-value=2e+02 Score=24.10 Aligned_cols=44 Identities=7% Similarity=0.179 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 025886 86 KSKQLERDYNILQANFNNLASR----FEALKKEKQALVIQLQKTNELL 129 (247)
Q Consensus 86 Krkq~e~e~~~lk~~~~~L~~~----~~~l~~E~~~L~~e~~~l~~~l 129 (247)
+..++..+...++..|.....+ ...|+++...|...+..|+..+
T Consensus 64 ~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 64 DNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555544444 4444555555555555554444
No 158
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.97 E-value=94 Score=17.76 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025886 109 EALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 109 ~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
+.+-+|.+.|+..+.+|+.++.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677778888888887775
No 159
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.82 E-value=97 Score=21.88 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=24.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025886 93 DYNILQANFNNLASRFEALKKEKQALVIQLQKT 125 (247)
Q Consensus 93 e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l 125 (247)
....|+.....|..+.+.++.++..|..++..|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666677778888888888888887654
No 160
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.78 E-value=1.5e+02 Score=24.41 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 107 RFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 107 ~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
...++.+|...|+.++...+-+++
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666655554443
No 161
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.54 E-value=1.1e+02 Score=21.74 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025886 93 DYNILQANFNNLASRFEALKKEKQALVIQLQKT 125 (247)
Q Consensus 93 e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l 125 (247)
....|+.....+..+.+.++.+++.|..++..|
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 355666666777778888888888888887643
No 162
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.35 E-value=2.3e+02 Score=21.96 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeecc
Q 025886 31 CKNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQ 79 (247)
Q Consensus 31 rr~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQ 79 (247)
....+.|+..++..|... . ..+.+|++-..|+..+.
T Consensus 35 ~~g~R~Y~~~dl~~l~~I------------~-~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 35 ESGVRKFGAEDLRWILFT------------R-QMRRAGLSIEALIDYLA 70 (142)
T ss_dssp TTSCBCBCHHHHHHHHHH------------H-HHHHTTCCHHHHHHHHH
T ss_pred CCCCeeeCHHHHHHHHHH------------H-HHHHcCCCHHHHHHHHH
Confidence 345678999999988643 2 23566666666655543
No 163
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=25.99 E-value=36 Score=22.58 Aligned_cols=44 Identities=7% Similarity=0.141 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccc
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQN 80 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQN 80 (247)
.+++.+..+|...|-...+ ....-.++|..+|+++..|+.+...
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4788899999888732111 1122467999999999999876543
No 164
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=25.61 E-value=40 Score=26.29 Aligned_cols=36 Identities=25% Similarity=0.682 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHH
Q 025886 42 IRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLE 91 (247)
Q Consensus 42 l~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e 91 (247)
+.++.-.|+.|+||.+.= .+|-+ .|||.+|+..+..
T Consensus 15 vRiIkiLyQSNPyP~peG-----------TRqaR---RNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEG-----------TRQAR---RNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCCC-----------CTTTH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCC-----------chhhh---HhHHHHHHHHHHH
Confidence 345556689999987641 11111 5999999986643
No 165
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.27 E-value=1.5e+02 Score=19.63 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 025886 89 QLERDYNILQANFNNLASRFEALKKEKQALVIQLQKT 125 (247)
Q Consensus 89 q~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l 125 (247)
.+......+...+..|..-....+.+...|+.+|.+|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666777777777777777777777765
No 166
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.23 E-value=1.3e+02 Score=22.69 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 025886 93 DYNILQANFNNLASRFEALKKEKQALVIQLQK 124 (247)
Q Consensus 93 e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~ 124 (247)
.+..++..++.|..+++.|.++++.|..++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777777777777776654
No 167
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=24.14 E-value=25 Score=29.28 Aligned_cols=52 Identities=27% Similarity=0.319 Sum_probs=33.5
Q ss_pred CCCCCCHHHH-HHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHH
Q 025886 33 NKRRFSDEQI-RSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARW 85 (247)
Q Consensus 33 ~Rt~fT~~Ql-~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~ 85 (247)
.+...+.+++ ..-...|....+ .......||+.+|+++.-|-..|.||-.-.
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~-~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDA-ETFSVRKLAASLGTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSC-CCCCHHHHHHHTTSCHHHHHHHTSSHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCc-ccCCHHHHHHHhCcCHHHHHHHcCCHHHHH
Confidence 3445666543 334444655544 344567789999999999999999975544
No 168
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=24.01 E-value=27 Score=23.53 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
.+++.+..+|...|. .+ ...++|..+|+++..|+.+..+-+.+.+
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 367788888877432 22 2458999999999999876654444444
No 169
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.79 E-value=23 Score=28.51 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchh
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKR 82 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRR 82 (247)
.+++.+..+|...|-. .....+||..||+++..|+.....-|
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKAL 228 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3566666666665522 12346789999999998877654333
No 170
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=23.77 E-value=47 Score=22.30 Aligned_cols=44 Identities=7% Similarity=0.064 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccc
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQN 80 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQN 80 (247)
.+++.+..+|...|-.... ....-.++|..+|+++..|+.+...
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5788999999988842100 1122458999999999999876543
No 171
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=23.59 E-value=1.7e+02 Score=21.39 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025886 91 ERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNEL 128 (247)
Q Consensus 91 e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~ 128 (247)
+.....++...+.+..+...+.-|...|..++..++.+
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555555555555443
No 172
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.37 E-value=1.7e+02 Score=22.43 Aligned_cols=8 Identities=38% Similarity=0.999 Sum_probs=0.0
Q ss_pred eeeeccch
Q 025886 74 VAIWFQNK 81 (247)
Q Consensus 74 VkiWFQNR 81 (247)
+..||+.+
T Consensus 9 aE~~y~~K 16 (129)
T 3tnu_B 9 AESWYQTK 16 (129)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33455443
No 173
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.29 E-value=1.8e+02 Score=19.80 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 025886 91 ERDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQNK 132 (247)
Q Consensus 91 e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~~~ 132 (247)
++....||+....|......|+...-....|+..|+.+|+..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666666777777777777777777788888887754
No 174
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.12 E-value=2.2e+02 Score=20.60 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=19.2
Q ss_pred chhhHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 025886 80 NKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQ 121 (247)
Q Consensus 80 NRRaK~Krkq~e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e 121 (247)
+||.+.+-.+...+.++++.--+.|..-...++.....|..+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E 54 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345555554555555555544444444444444333333333
No 175
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=23.05 E-value=65 Score=27.93 Aligned_cols=39 Identities=13% Similarity=0.306 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 92 RDYNILQANFNNLASRFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 92 ~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
..++.+-..++.+..+.+.+..|++.+++++.+|+..+.
T Consensus 141 ~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 141 ETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555666666666666666666666666665543
No 176
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.95 E-value=2.6e+02 Score=21.44 Aligned_cols=18 Identities=6% Similarity=0.049 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025886 111 LKKEKQALVIQLQKTNEL 128 (247)
Q Consensus 111 l~~E~~~L~~e~~~l~~~ 128 (247)
|++|...|+.....|+..
T Consensus 40 Lq~El~~lr~~~~~l~~~ 57 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKY 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 177
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.94 E-value=1.3e+02 Score=23.59 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025886 102 NNLASRFEALKKEKQALVIQLQKTNEL 128 (247)
Q Consensus 102 ~~L~~~~~~l~~E~~~L~~e~~~l~~~ 128 (247)
+.+....+.+.+++..|+.++.+|+.+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444
No 178
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.92 E-value=1.4e+02 Score=18.36 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025886 107 RFEALKKEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 107 ~~~~l~~E~~~L~~e~~~l~~~l~ 130 (247)
.+.+.+++.+.|+.|+..|.++++
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 334455556666666666665554
No 179
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=22.60 E-value=1.8e+02 Score=24.75 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 025886 91 ERDYNILQANFNNLASRFEALKKEKQALVIQLQKTN 126 (247)
Q Consensus 91 e~e~~~lk~~~~~L~~~~~~l~~E~~~L~~e~~~l~ 126 (247)
+.++-..-.+|..|....+++..|+..|+..+.+|+
T Consensus 36 ~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 36 RVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 444444445555555555555555544444444443
No 180
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.24 E-value=2.7e+02 Score=21.82 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=9.1
Q ss_pred cchhhHHhhHHHHHHHHHHH
Q 025886 79 QNKRARWKSKQLERDYNILQ 98 (247)
Q Consensus 79 QNRRaK~Krkq~e~e~~~lk 98 (247)
+|.+.+.....+......+.
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~ 42 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAM 42 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44455544444444444333
No 181
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=21.52 E-value=2.2e+02 Score=22.03 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCc
Q 025886 34 KRRFSDEQIRSLELMFEN-----ETRLEPRKKLQLAKELGLQP 71 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~-----~~~ps~~~r~eLA~~LgLs~ 71 (247)
...++..++..|...|.. +.+++..+...+...+|+.+
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~ 90 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLC 90 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCC
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCC
Confidence 446899999999999976 34788888888888887654
No 182
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=21.50 E-value=1.4e+02 Score=23.56 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHhhHHHHHHHHHHHHhhhhhHHHHHHHH
Q 025886 33 NKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALK 112 (247)
Q Consensus 33 ~Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~Krkq~e~e~~~lk~~~~~L~~~~~~l~ 112 (247)
..+.|+..++..|.. ....+.+|++-.+|+..+......... ....-. ..+......+.
T Consensus 45 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~eI~~~l~~~~~~~~~-~~~~~~-------~ll~~~~~~l~ 103 (154)
T 2zhg_A 45 NQRRYKRDVLRYVAI-------------IKIAQRIGIPLATIGEAFGVLPEGHTL-SAKEWK-------QLSSQWREELD 103 (154)
T ss_dssp SCEEBCTTHHHHHHH-------------HHHHHHHTCCHHHHHHHHCC-----CC-CHHHHH-------HHHHHHHHHHH
T ss_pred CCEEeCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHhccccCcc-cHHHHH-------HHHHHHHHHHH
Confidence 355688888887753 233567788877777666532211100 000001 11222344566
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025886 113 KEKQALVIQLQKTNELLQ 130 (247)
Q Consensus 113 ~E~~~L~~e~~~l~~~l~ 130 (247)
.+...|......|...+.
T Consensus 104 ~qi~~L~~~~~~L~~~~~ 121 (154)
T 2zhg_A 104 RRIHTLVALRDELDGCIG 121 (154)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666666666653
No 183
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=21.46 E-value=36 Score=21.44 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeecc
Q 025886 39 DEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQ 79 (247)
Q Consensus 39 ~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQ 79 (247)
+.+...+...+... . ...+||..||+++..|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555555545322 2 356789999999999987764
No 184
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=21.17 E-value=59 Score=23.98 Aligned_cols=42 Identities=10% Similarity=0.227 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccch
Q 025886 35 RRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNK 81 (247)
Q Consensus 35 t~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNR 81 (247)
..++.++...+...+... . ...++|+.||++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 457888777666666533 2 25678999999999999998653
No 185
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.83 E-value=28 Score=24.61 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHHh
Q 025886 34 KRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~K 86 (247)
-..+++.+..+|...+. .+ ...+||..||+++..|+.+..+-+.|.+
T Consensus 27 l~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 34689999999987543 22 2347899999999999887655444443
No 186
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=20.53 E-value=25 Score=24.38 Aligned_cols=45 Identities=24% Similarity=0.326 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCccceeeec
Q 025886 34 KRRFSDEQIRSLELMFEN-----ETRLEPRKKLQLAKELGLQPRQVAIWF 78 (247)
Q Consensus 34 Rt~fT~~Ql~~LE~~F~~-----~~~ps~~~r~eLA~~LgLs~rQVkiWF 78 (247)
...++.+++..|...|.. +.+++..+...+...+|++..+|..+|
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~ 67 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVF 67 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHH
Confidence 456888999999999865 346888888888888887666655444
No 187
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=20.48 E-value=27 Score=24.65 Aligned_cols=49 Identities=6% Similarity=0.088 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccceeeeccchhhHH
Q 025886 36 RFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARW 85 (247)
Q Consensus 36 ~fT~~Ql~~LE~~F~~~~~ps~~~r~eLA~~LgLs~rQVkiWFQNRRaK~ 85 (247)
.+++.+..+|...|-.... ......+||..+|+++..|+.+...-+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4788888898888742100 112356789999999999987654433333
Done!