BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025888
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 35 KHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTF---ASPNTTLQDIVLEFSMAYFLM 90
KHR+ SC ++ HG ++ LS++ F SPNT LQ VL ++ YF+
Sbjct: 28 KHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIF 87
Query: 91 DLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSP 142
DL I F L + HH ++ + + G E+ +L +EIT+P
Sbjct: 88 DLGWCIYFQSEGPLMLAHHTLSILGIIMALALGESGT-EVNAVLFGSEITNP 138
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 35 KHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTF---ASPNTTLQDIVLEFSMAYFLM 90
KHR+ +C ++ HG ++ LS++ F SPNT LQ VL ++ YF+
Sbjct: 28 KHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIF 87
Query: 91 DLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSP 142
DL I F L + HH ++ + + G E+ +L +EIT+P
Sbjct: 88 DLGWCIYFRSEGPLMLAHHTLSILGIIVALVLGESGT-EVNAVLFGSEITNP 138
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 35 KHRAEASSC-FISLAHGTPAVLLSSHAAIRSTQTTF---ASPNTTLQDIVLEFSMAYFLM 90
KHR+ SC ++ HG ++ LS++ F SPNT LQ VL ++ YF+
Sbjct: 28 KHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIF 87
Query: 91 DLLHYIIFTPRDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSP 142
DL + F L + HH ++ + + G E+ +L +E+T+P
Sbjct: 88 DLGWCVYFQSEGALMLAHHTLSILGIIMALVLGESGT-EVNAVLFGSELTNP 138
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 9/149 (6%)
Query: 44 FISLAHGTPAVLLSSHAAIRSTQTTFASP---NTTLQDIVLEFSMAYFLMDLLHYIIFTP 100
++L HG + L+++ + F P NT Q + L S+ YFL D+ + F
Sbjct: 37 LVTLFHGILIICLTAYIGFIAGPWPFTHPGTENTYFQILTLVLSLGYFLFDMAWCVYFRT 96
Query: 101 RDILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSP-CQNVWSLSSFWKADVPA 159
+ + HH +++ + + G E +L +EIT+P Q W L D A
Sbjct: 97 EGPVMLAHHTMSIFGILLALGLGESG-IETCAVLFGSEITNPLLQARWFLKRMGCYDSLA 155
Query: 160 SARLHDLLSAPFYTFYSVVRGILGPLFVY 188
D++ F ++ VR +G +Y
Sbjct: 156 G----DVVDLLFILLFASVRIGVGSRMLY 180
>sp|Q7TT41|MOXD2_MOUSE DBH-like monooxygenase protein 2 OS=Mus musculus GN=Moxd2 PE=2 SV=1
Length = 619
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 19 YALYVFAYFVVFRGWPKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASPNTTLQD 78
Y L F G P S +IS A LL +H A RS Q T LQ
Sbjct: 363 YGLCKTDKFEELNGAP-----VSDIYIS------ACLLHTHLAGRSLQALQYRNGTQLQV 411
Query: 79 IVLEFSMAYFLM---DLLHYIIFTPRDILFILHHAATL 113
+ +FS + L DL H ++ P D L I H TL
Sbjct: 412 VCKDFSYDFNLQESRDLPHPVVIKPGDELLIECHYQTL 449
>sp|P41948|MEP2_YEAST Ammonium transporter MEP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MEP2 PE=1 SV=1
Length = 499
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 170 PFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVL 227
P Y +SV +LG +F++ W+F+ G+A N I AW S M +A L W++
Sbjct: 221 PKYKPHSVTSVVLGTVFLWFGWMFFNGGSAGNAT-IRAWYSIMSTNLAAACGGLTWMV 277
>sp|B9M5U2|ISPE_GEOSF 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Geobacter sp.
(strain FRC-32) GN=ispE PE=3 SV=1
Length = 279
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 184 PLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGK 243
P F++K G D L + A +W+V++ + +S WV Y+NL +AGK
Sbjct: 139 PFFIFKKTALA-EGIGDKLAAVEAAPAWLVIVNPNLAVSTAWV-------YQNLQLTAGK 190
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.141 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,539,937
Number of Sequences: 539616
Number of extensions: 3351896
Number of successful extensions: 9644
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9634
Number of HSP's gapped (non-prelim): 24
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)