Query 025888
Match_columns 246
No_of_seqs 158 out of 355
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 10:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00724 TLC TRAM, LAG1 and 100.0 3.9E-30 8.5E-35 218.4 19.9 196 35-237 1-204 (205)
2 KOG4561 Uncharacterized conser 100.0 1E-32 2.2E-37 242.6 -0.1 200 31-239 61-269 (281)
3 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 5.7E-28 1.2E-32 202.5 20.1 186 39-231 1-198 (198)
4 KOG4474 Uncharacterized conser 99.9 1.9E-23 4.1E-28 180.5 17.3 187 34-233 40-233 (253)
5 KOG1607 Protein transporter of 97.8 0.00086 1.9E-08 60.8 14.5 195 38-244 87-296 (318)
6 COG5058 LAG1 Protein transport 96.8 0.016 3.5E-07 52.5 10.6 187 38-235 155-365 (395)
7 PF11044 TMEMspv1-c74-12: Plec 81.5 2.4 5.1E-05 27.4 3.2 22 224-245 19-41 (49)
8 KOG3966 p53-mediated apoptosis 68.5 25 0.00055 31.7 7.4 77 165-241 95-180 (360)
9 PHA02690 hypothetical protein; 52.2 24 0.00053 25.7 3.6 34 136-182 30-64 (90)
10 COG1114 BrnQ Branched-chain am 36.3 1.5E+02 0.0031 28.5 7.2 91 2-98 109-203 (431)
11 PF14018 DUF4234: Domain of un 29.3 2E+02 0.0043 20.0 7.2 18 219-236 54-71 (75)
12 TIGR02106 cyd_oper_ybgT cyd op 28.1 1E+02 0.0022 18.2 3.0 19 209-227 4-25 (30)
13 PRK14749 hypothetical protein; 26.5 1.2E+02 0.0026 17.8 3.1 18 210-227 5-25 (30)
14 PF05251 UPF0197: Uncharacteri 21.8 3.2E+02 0.0069 19.8 6.6 63 1-63 4-72 (77)
No 1
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.97 E-value=3.9e-30 Score=218.41 Aligned_cols=196 Identities=23% Similarity=0.308 Sum_probs=156.8
Q ss_pred ccccCchhHHHHHhhHHHHHHHHHHHHHh--cCC-cccCCCCChhhHHHHHHHHHHHHHHHHHHHHhc----cCchHHHH
Q 025888 35 KHRAEASSCFISLAHGTPAVLLSSHAAIR--STQ-TTFASPNTTLQDIVLEFSMAYFLMDLLHYIIFT----PRDILFIL 107 (246)
Q Consensus 35 ~~~~ew~nr~vS~~Ha~v~~~la~~~~~~--~~~-~~~~~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~----~~~~~~l~ 107 (246)
+|+.||+||++|.+||++++..+++.... |+. .....++|+.++...++++|||++|+..|+.+. .++++|++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~~~~~ 80 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFKEMLV 80 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 58899999999999999999999887763 331 112368999999999999999999999999653 23899999
Q ss_pred HHHHHHHHHhhhhhhccchhHHHHHHHHHHHhchH-hHHHHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhhchhhhh
Q 025888 108 HHAATLYVFVTCRYVVHYGAFELLILLILAEITSP-CQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILGPLF 186 (246)
Q Consensus 108 HH~~~i~~~~~~~~~~~~~~~~~~~~~ll~E~StP-~~~~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~~~p~~ 186 (246)
||++++.++..+. ..+......+ .+++.|+||| ++.||.+...++++++ ++..|+.+|+++|+++|++.+|+.
T Consensus 81 HHv~~~~~~~~~~-~~~~~~~~~~-~~~l~E~s~~fl~~~~~l~~~~~~~~~----~~~~~~~~f~~~f~~~R~~~~p~~ 154 (205)
T smart00724 81 HHIATLLLISLSY-VLNFTRLGLL-LLLLHELSDPFLHLRKLLNYAGRKKSL----LYDVNFVLFAVVFFVFRLILFPFL 154 (205)
T ss_pred HHHHHHHHHHHHH-HhhhhHHHHH-HHHHHhhhHHHHHHHHHHHHhccccch----hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887533 3444444444 3589999999 6668888888887554 889999999999999999999999
Q ss_pred HHhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025888 187 VYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNL 237 (246)
Q Consensus 187 ~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ni~Wf~ki~~g~~k~~ 237 (246)
.+........ ...+..|.+....+...+....+||++|+.+|.|+..|..
T Consensus 155 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 155 ILTVTVHYAQ-AESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHHHHhhhhh-hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888754332 1222356667777777777788999999999999999864
No 2
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1e-32 Score=242.62 Aligned_cols=200 Identities=19% Similarity=0.238 Sum_probs=150.3
Q ss_pred hcC-CccccCch-hHHHHHhhHHHHHHHHHHHHHhcCCcccC--CCCChhhHHHHHHH--HHHHHHHHHHHHHh--ccCc
Q 025888 31 RGW-PKHRAEAS-SCFISLAHGTPAVLLSSHAAIRSTQTTFA--SPNTTLQDIVLEFS--MAYFLMDLLHYIIF--TPRD 102 (246)
Q Consensus 31 ~~l-~~~~~ew~-nr~vS~~Ha~v~~~la~~~~~~~~~~~~~--~~~t~~~~~~l~~S--~GYFi~Dl~~~l~~--~~~~ 102 (246)
+++ +++|+||| +|+||++|+++++ ++|.++.+|....| ...+......-.-+ .|||+.|+.++.++ ..+|
T Consensus 61 ~~l~~k~~i~wn~~~~Vs~~hslv~~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g~gy~i~dl~~i~~~~~~~~~ 138 (281)
T KOG4561|consen 61 RSLDKKLKIEWNCVRVVSTVHSLVSS--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVGIGYFIPDLTWIIVRYFVLGG 138 (281)
T ss_pred hhhcCcEEEEEecCceeeeehHhhhc--ccceeecCcccchhhhhccceeecceeeccccceEecccceeEEEEeeeecC
Confidence 568 99999999 9999999999998 77877765543223 11111111111111 56999999755443 5799
Q ss_pred hHHHHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHhchH-hHHHHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhhc
Q 025888 103 ILFILHHAATLYVFVTCRYVVHYGAFELLILLILAEITSP-CQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGI 181 (246)
Q Consensus 103 ~~~l~HH~~~i~~~~~~~~~~~~~~~~~~~~~ll~E~StP-~~~~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~ 181 (246)
.+|++||+++.+.. .|....++|.+.. ...+++|+||| +|.||+++++++++|. +|.+||++++++|+++||+
T Consensus 139 ~~fviHh~~s~~~v-~~~~~~~~g~y~~-~~~L~~ElSTPFvnlrw~L~~~~~k~Sl----~~~vNG~lm~~~F~v~RIl 212 (281)
T KOG4561|consen 139 IEFVIHHIASLVFV-GCLLRRGVGQYYA-GTFLMAELSTPFVNLRWFLDKAGQKKSL----FYKVNGLLLLVVFFVARIL 212 (281)
T ss_pred eeEEeeHHHHhhhh-eeeEecCccceee-eeeheeecCCceeeHHHHHHHcCcccch----HHHhhhHHHHHHHHHHHHH
Confidence 99999999993332 2455455555543 44699999999 9999999999999865 8999999999999999999
Q ss_pred hhhhhHHhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 025888 182 LGPLFVYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGY 239 (246)
Q Consensus 182 ~~p~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ni~Wf~ki~~g~~k~~~~ 239 (246)
..|++.++++..+.. ....++|......+.......+++|++||+||.||..|-.++
T Consensus 213 l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~ 269 (281)
T KOG4561|consen 213 LWPYMGWHYYWRYQG-LVLNQVPPFLPLFLLGLNALLLVLNLYWFSKMVRGALKVLKK 269 (281)
T ss_pred HHHHHHHHHHHHHhh-hhhhhhchhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 999999988855543 444567766777777667777889999999999999975443
No 3
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.96 E-value=5.7e-28 Score=202.46 Aligned_cols=186 Identities=20% Similarity=0.334 Sum_probs=138.8
Q ss_pred CchhHHHHHhhHHHHHHHHHHHHHhcCCc-----ccC-CCCChhhHHHHHHHHHHHHHHHHHHHHhc-cC-c-hHHHHHH
Q 025888 39 EASSCFISLAHGTPAVLLSSHAAIRSTQT-----TFA-SPNTTLQDIVLEFSMAYFLMDLLHYIIFT-PR-D-ILFILHH 109 (246)
Q Consensus 39 ew~nr~vS~~Ha~v~~~la~~~~~~~~~~-----~~~-~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~-~~-~-~~~l~HH 109 (246)
||+||++|++|+++++.+|.+++..+|+. +.. .++++.++...++++|||++|+..|+.+. .. | +++++||
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~HH 80 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLHH 80 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHH
Confidence 79999999999999999999999997721 112 33455777899999999999999999964 22 3 9999999
Q ss_pred HHHHHHHhhhhhhccchhHHHHHHHHHHHhchH-hHHHHHHHHccCC--CCchhhhHHHhhhHHHHHHHHHhhhchhhhh
Q 025888 110 AATLYVFVTCRYVVHYGAFELLILLILAEITSP-CQNVWSLSSFWKA--DVPASARLHDLLSAPFYTFYSVVRGILGPLF 186 (246)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~~~~~~~~ll~E~StP-~~~~w~L~~~~~~--~s~~~~~~y~~n~l~f~~~F~v~Ri~~~p~~ 186 (246)
++++.++.. .+..+.+... ....++.|+||| ++.||.+...+++ ++ +.+..|+.+|.++|+++|++.+|+.
T Consensus 81 ~~~l~~~~~-~~~~~~~~~~-~~~~ll~E~st~fl~~r~~l~~~~~~~~~~----~~~~~~~~~f~~~f~~~Ri~~~~~~ 154 (198)
T PF03798_consen 81 VVTLVLFYF-SYFYNFGRFG-IVVFLLHEISTPFLNLRWFLKYLGGYSKKS----SLYRFNGVLFAVTFFVFRIVLFPYL 154 (198)
T ss_pred HHHHHHHHH-hhHHHHhhHH-HHHHHHHhcccHHHHHHHHHHHHhccccch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998864 3334444443 333589999999 6678998888443 33 3789999999999999999999998
Q ss_pred HHhhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025888 187 VYKLWLFYISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWI 231 (246)
Q Consensus 187 ~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ni~Wf~ki~~ 231 (246)
.++....... ......+.+.............++|++|++||+|
T Consensus 155 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 155 IYWVYWDVWP-LPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHHHHHHhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8777643221 1112222334444444555567899999999987
No 4
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=1.9e-23 Score=180.52 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=144.4
Q ss_pred CccccCchhHHHHHhhHHHHHHHHHHHHHhcCCcccC---CCCChhhHHHHHHHHHHHHHHHHHHHHhc--cCchHHHHH
Q 025888 34 PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFA---SPNTTLQDIVLEFSMAYFLMDLLHYIIFT--PRDILFILH 108 (246)
Q Consensus 34 ~~~~~ew~nr~vS~~Ha~v~~~la~~~~~~~~~~~~~---~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~--~~~~~~l~H 108 (246)
+-||.++.|+.||++||++++.+|.+++..+|+. .+ ...+..+..++++|+|||+||+.+|..++ ...++.+.|
T Consensus 40 ~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~-~~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~s~e~LvH 118 (253)
T KOG4474|consen 40 VYQKKRFSNLTVSLLHSTISGLWALLSLLYDPEM-VDDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSELSWEYLVH 118 (253)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHhCccc-ccCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 4458999999999999999999999999999864 33 45667888999999999999999999986 678999999
Q ss_pred HHHHHHHHhhhhhhccchhHHHHHHHHHHHhchHhHHHHHHHHc-cCCCCchhhhHHHhhhHHHHHHHHHhhhchhhhhH
Q 025888 109 HAATLYVFVTCRYVVHYGAFELLILLILAEITSPCQNVWSLSSF-WKADVPASARLHDLLSAPFYTFYSVVRGILGPLFV 187 (246)
Q Consensus 109 H~~~i~~~~~~~~~~~~~~~~~~~~~ll~E~StP~~~~w~L~~~-~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~~~p~~~ 187 (246)
|++++.++..+.+.....+....+ +++|+|||+.|.|.+.++ |.+++. . .++++..++.++|+++|.+..-+++
T Consensus 119 H~v~i~aF~~~lf~~~~~~~~~~~--llmEv~SiFLH~R~il~l~g~s~~~-~--~~rv~v~lN~i~f~~fR~~~~~~l~ 193 (253)
T KOG4474|consen 119 HVVCIIAFVLGLFYSKFLGYVVAA--LLMEVSSIFLHLRSILKLAGLSTTL-P--SFRVVVYLNLITFFFFRLIPQIYLT 193 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHHhCCCCCC-c--hhHHHHHHHHHHHHHHHhccceeEE
Confidence 999999998767656555544333 699999999998887654 444332 1 6899999999999999999888777
Q ss_pred HhhhhhhhccCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 025888 188 YKLWLFYISGAADNLIPIWAWLSWMVVI-TSAILLSLLWVLSNWIGW 233 (246)
Q Consensus 188 ~~~~~~~~~~~~~~~ip~~~~~~~~~~~-~~~~~~ni~Wf~ki~~g~ 233 (246)
++... .....|. ...+..... ....++|++-+.|+++.+
T Consensus 194 ~~~i~------~~~~~~~-~~~~~~~gg~~~l~~~n~~l~~rll~sd 233 (253)
T KOG4474|consen 194 YFLIA------NAPFLHW-YLKLFALGGLLCLAVINTVLTLRLLASD 233 (253)
T ss_pred EEEee------eCCCcce-ehhHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 66652 1222232 211222222 223569999999999998
No 5
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00086 Score=60.83 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=101.2
Q ss_pred cCchhHHHHHhhHHHHHHHHHHHHHhcCCcccC-------CC---CChhhHHHHHHHHHHHHHHHHHHHHhc--cCchHH
Q 025888 38 AEASSCFISLAHGTPAVLLSSHAAIRSTQTTFA-------SP---NTTLQDIVLEFSMAYFLMDLLHYIIFT--PRDILF 105 (246)
Q Consensus 38 ~ew~nr~vS~~Ha~v~~~la~~~~~~~~~~~~~-------~~---~t~~~~~~l~~S~GYFi~Dl~~~l~~~--~~~~~~ 105 (246)
.+.....=..+==.++.+.++|.+..+|+. .+ +| ..+..+..-.+=.|+-.+-+..+..-. .+-++|
T Consensus 87 ~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf-~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~d~~rkDf~~m 165 (318)
T KOG1607|consen 87 KKFCESAWKFLYYLVSWIFGLYVMYHEPWF-YDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFALFLDEKRKDFWEM 165 (318)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhheecchhh-cCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHhhccccHHHHH
Confidence 334444444555566777888877776653 22 23 223334444445666555555554432 345889
Q ss_pred HHHHHHHHHHHhhhhhhc--cchhHHHHHHHHHHHhchHhHHHHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhhchh
Q 025888 106 ILHHAATLYVFVTCRYVV--HYGAFELLILLILAEITSPCQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGILG 183 (246)
Q Consensus 106 l~HH~~~i~~~~~~~~~~--~~~~~~~~~~~ll~E~StP~~~~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~~~ 183 (246)
++||++++.=... .+.. -+.|..+ +.+..+|-++.-.=.+....+.+ .+-+..-.+|+..|+..|+...
T Consensus 166 ~vHHvvTl~Li~l-Sy~~~f~R~G~li---l~lhD~SD~~Le~~K~~nY~~~~-----~~~~~~F~~F~~~wi~~RL~~~ 236 (318)
T KOG1607|consen 166 VVHHVVTLILISL-SYVFNFTRVGTLI---LALHDASDVFLELGKMLNYLQFE-----AIADFVFVLFAFSWIYTRLIYY 236 (318)
T ss_pred HHHHHHHHHHHHH-HHHhhhhccccee---eeeecchHHHHHHHHHHchhhHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999664431 1111 1111111 12344444444322221111111 1333444568899999998888
Q ss_pred hhhHHhhhhh-hhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCcC
Q 025888 184 PLFVYKLWLF-YISGAADNLIPIWAWLSWMVVITSAILLSLLWVLSNWIGWYRNLGYSAGKK 244 (246)
Q Consensus 184 p~~~~~~~~~-~~~~~~~~~ip~~~~~~~~~~~~~~~~~ni~Wf~ki~~g~~k~~~~~~~~~ 244 (246)
|....+.-.. +-+.+..+--|. .....+......+||++|++-|.|...|.-+++.+.|
T Consensus 237 p~wil~st~~~~~~~~~~~~~~~--~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g~~~e 296 (318)
T KOG1607|consen 237 PFWILRSTSREDFSLRQYQPKPS--YYFFNCLLLALQLLHIYWFYLILRMAYRVIKRGMQGE 296 (318)
T ss_pred HHHHHHHhHHHHHHhhccCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 7765444321 122122333332 1122223334557999999999999998666443333
No 6
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.016 Score=52.54 Aligned_cols=187 Identities=12% Similarity=0.104 Sum_probs=92.8
Q ss_pred cCchhHHHHHhhHHHHHHHHHHHHHhcCCccc------C-C---CCChhhHHHHHHHHHHHHHHHHHHHHh--c--cCch
Q 025888 38 AEASSCFISLAHGTPAVLLSSHAAIRSTQTTF------A-S---PNTTLQDIVLEFSMAYFLMDLLHYIIF--T--PRDI 103 (246)
Q Consensus 38 ~ew~nr~vS~~Ha~v~~~la~~~~~~~~~~~~------~-~---~~t~~~~~~l~~S~GYFi~Dl~~~l~~--~--~~~~ 103 (246)
.......=+.+--.+++..++|++...|..-+ + . .++.+-+.---+=.||-+.......+. . .+-+
T Consensus 155 kRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilvLqlEkprkD~~ 234 (395)
T COG5058 155 KRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQLEKPRKDFK 234 (395)
T ss_pred HHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhheeeecchhhhHH
Confidence 44455555666666777777777665443211 1 2 244444444444556665553222222 2 2458
Q ss_pred HHHHHHHHHHHHHhhhhhhccchhHHHHH--HHHHHHhchHhHH-HHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhh
Q 025888 104 LFILHHAATLYVFVTCRYVVHYGAFELLI--LLILAEITSPCQN-VWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRG 180 (246)
Q Consensus 104 ~~l~HH~~~i~~~~~~~~~~~~~~~~~~~--~~ll~E~StP~~~-~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri 180 (246)
+++.||++++.-+.. .+ +-.+.-++ .+..+.+|-|++. .-.+ ++-++.. .+.+-+ .|...|+-.|=
T Consensus 235 elv~HHIVTllLI~l-SY---~fhftr~GlAI~itmDvSD~~Ls~sK~l---nYl~~~l---~~~iF~-iFv~~wIysRH 303 (395)
T COG5058 235 ELVFHHIVTLLLIWL-SY---VFHFTRMGLAIYITMDVSDFFLSLSKTL---NYLNSVL---ATFIFG-IFVFIWIYSRH 303 (395)
T ss_pred HHHHHHHHHHHHHHH-HH---HHHHHhccceEEEEEeccHHHHHHHHHH---HHhhchh---HHHHHH-HHHHHHHHHHH
Confidence 899999999765432 11 12222222 2457889999554 3333 2222222 122222 36666666662
Q ss_pred chhhhhHHhhh-hhhhccCCCCcchhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Q 025888 181 ILGPLFVYKLW-LFYISGAADNLIPIWAWLSWM------VVITSAILLSLLWVLSNWIGWYR 235 (246)
Q Consensus 181 ~~~p~~~~~~~-~~~~~~~~~~~ip~~~~~~~~------~~~~~~~~~ni~Wf~ki~~g~~k 235 (246)
.+.--..+.++ .+-..|.-+-.+|.|..-+|+ +....+.+||++|+.-|.|...|
T Consensus 304 yln~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayR 365 (395)
T COG5058 304 YLNLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYR 365 (395)
T ss_pred HHHHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111121 111111112244555544442 22233457999999999998885
No 7
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=81.53 E-value=2.4 Score=27.40 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhh-cCCccCcCC
Q 025888 224 LWVLSNWIGWYRN-LGYSAGKKV 245 (246)
Q Consensus 224 ~Wf~ki~~g~~k~-~~~~~~~~~ 245 (246)
.|+....-+-+|. |.+|++||+
T Consensus 19 ~~iGl~IyQkikqIrgKkk~KKe 41 (49)
T PF11044_consen 19 AWIGLSIYQKIKQIRGKKKEKKE 41 (49)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Confidence 4555444444442 344455554
No 8
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=68.49 E-value=25 Score=31.70 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=51.2
Q ss_pred HhhhHHHHHHHHHhhhchhhhhHHhhhhhhhccCCCCcchhHHHH--------HHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 025888 165 DLLSAPFYTFYSVVRGILGPLFVYKLWLFYISGAADNLIPIWAWL--------SWMVVITSA-ILLSLLWVLSNWIGWYR 235 (246)
Q Consensus 165 ~~n~l~f~~~F~v~Ri~~~p~~~~~~~~~~~~~~~~~~ip~~~~~--------~~~~~~~~~-~~~ni~Wf~ki~~g~~k 235 (246)
..||-.+.+.++++-=+..|.+-.....+++.....+.+..|+.- -|+.-+-.+ -++|-.||..|....+|
T Consensus 95 ~wngg~~w~s~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~~ls~lfg~iwVlPiF~lSkiV~alWF~DIa~aa~r 174 (360)
T KOG3966|consen 95 LWNGGAMWISFLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHPILSLLFGYIWVLPIFFLSKIVQALWFSDIAGAAMR 174 (360)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHheeccCCccccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888887778887766665566544444556555422 233222223 25899999999999999
Q ss_pred hcCCcc
Q 025888 236 NLGYSA 241 (246)
Q Consensus 236 ~~~~~~ 241 (246)
.+|.|-
T Consensus 175 v~k~~P 180 (360)
T KOG3966|consen 175 VLKLPP 180 (360)
T ss_pred HhcCCC
Confidence 887763
No 9
>PHA02690 hypothetical protein; Provisional
Probab=52.24 E-value=24 Score=25.65 Aligned_cols=34 Identities=38% Similarity=0.597 Sum_probs=25.0
Q ss_pred HHHhchH-hHHHHHHHHccCCCCchhhhHHHhhhHHHHHHHHHhhhch
Q 025888 136 LAEITSP-CQNVWSLSSFWKADVPASARLHDLLSAPFYTFYSVVRGIL 182 (246)
Q Consensus 136 l~E~StP-~~~~w~L~~~~~~~s~~~~~~y~~n~l~f~~~F~v~Ri~~ 182 (246)
=.|=||| +-+.|-+ +|...--.|.+.++++|+++
T Consensus 30 hlEgs~plLR~~~Rl-------------LfDL~lTvfV~myiv~Rl~~ 64 (90)
T PHA02690 30 HLEGSTPLLRQMWRL-------------LFDLLLTVFVVMYIVFRLIW 64 (90)
T ss_pred HHhcCCHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 5688889 6666654 56666667888899999774
No 10
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=36.34 E-value=1.5e+02 Score=28.49 Aligned_cols=91 Identities=18% Similarity=0.284 Sum_probs=54.0
Q ss_pred CcccccchhHHHHHHHHHHHHHHH-HHHHHhcC-CccccCchhHHHHHhhHHHHHHHHHHHHHhcCCcccCCC--CChhh
Q 025888 2 DPFRSNSLNFSTFFLMFYALYVFA-YFVVFRGW-PKHRAEASSCFISLAHGTPAVLLSSHAAIRSTQTTFASP--NTTLQ 77 (246)
Q Consensus 2 ~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~l-~~~~~ew~nr~vS~~Ha~v~~~la~~~~~~~~~~~~~~~--~t~~~ 77 (246)
.|+..+. +.+ ....|+.+|+.. ++++ + +.|-.||--++.+-+=-+....+.+-.+.. |..+...+ ...-+
T Consensus 109 ~p~~~~~-~~~-~l~ifs~ifF~ia~~~s---l~psklid~vGk~LTPilLv~l~il~i~~~~~-p~g~~~~a~~~y~~~ 182 (431)
T COG1114 109 SPLLGDS-SLP-SLFIFSVIFFAIAYLFS---LNPSKLIDRVGKFLTPILLVLLLILVIAAIIP-PAGPISAASGAYQSQ 182 (431)
T ss_pred hcccCCC-cch-HHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCCcccccHHHHhC
Confidence 3666665 333 333455544433 3332 5 777788888877777666666666664444 33222222 22235
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 025888 78 DIVLEFSMAYFLMDLLHYIIF 98 (246)
Q Consensus 78 ~~~l~~S~GYFi~Dl~~~l~~ 98 (246)
-+.-++.=||...|.+.-+.+
T Consensus 183 pf~~GfleGY~TMDaLAal~F 203 (431)
T COG1114 183 PFSKGFLEGYLTMDALAALAF 203 (431)
T ss_pred hHHHHHhcchHHHHHHHHHHH
Confidence 667789999999999887754
No 11
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=29.32 E-value=2e+02 Score=19.95 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 025888 219 ILLSLLWVLSNWIGWYRN 236 (246)
Q Consensus 219 ~~~ni~Wf~ki~~g~~k~ 236 (246)
-+.+++|++|+.+..-++
T Consensus 54 gi~~i~w~~k~~~~i~~~ 71 (75)
T PF14018_consen 54 GIYSIYWAYKLGNRINEE 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 369999999998877543
No 12
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=28.09 E-value=1e+02 Score=18.20 Aligned_cols=19 Identities=21% Similarity=0.651 Sum_probs=13.7
Q ss_pred HHHHHHHHHHH---HHHHHHHH
Q 025888 209 LSWMVVITSAI---LLSLLWVL 227 (246)
Q Consensus 209 ~~~~~~~~~~~---~~ni~Wf~ 227 (246)
..|++.++.+. ++|.+|+-
T Consensus 4 faWilG~~lA~~~~v~~a~w~E 25 (30)
T TIGR02106 4 FAWILGTLLACAFGVLNAMWLE 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777764 48899986
No 13
>PRK14749 hypothetical protein; Provisional
Probab=26.55 E-value=1.2e+02 Score=17.84 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=13.0
Q ss_pred HHHHHHHHHH---HHHHHHHH
Q 025888 210 SWMVVITSAI---LLSLLWVL 227 (246)
Q Consensus 210 ~~~~~~~~~~---~~ni~Wf~ 227 (246)
.|++.++.+. ++|.+|+-
T Consensus 5 aWiLG~~lAc~f~ilna~w~E 25 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLVWLD 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 5766666653 59999986
No 14
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=21.79 E-value=3.2e+02 Score=19.78 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=38.0
Q ss_pred CCcccccchh--HHH--HHHHHHHHHHHHHHHHHhcC--CccccCchhHHHHHhhHHHHHHHHHHHHHh
Q 025888 1 MDPFRSNSLN--FST--FFLMFYALYVFAYFVVFRGW--PKHRAEASSCFISLAHGTPAVLLSSHAAIR 63 (246)
Q Consensus 1 ~~~~~~~~~~--~~~--~~~~f~~~~~~~~~~~~~~l--~~~~~ew~nr~vS~~Ha~v~~~la~~~~~~ 63 (246)
|||+.++.=- .|. .++....+.+.++|+++.-- +++|.--..-.+|.+-++.-+...+..++.
T Consensus 4 m~~Y~sPV~p~~~p~La~vll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~flGfG~lFLlL~ 72 (77)
T PF05251_consen 4 MSRYTSPVNPALYPHLAVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFLGFGSLFLLLW 72 (77)
T ss_pred ccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5566655432 342 23333445667777776543 445555666788888888888877765554
Done!