Query 025888
Match_columns 246
No_of_seqs 158 out of 355
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 19:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025888.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025888hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54b2 f.17.2.1 (B:1-90) Mito 3.9 2.9E+02 0.021 17.3 2.6 15 6-20 62-77 (90)
2 d1zela1 a.4.5.83 (A:1-82) Hypo 3.5 2.2E+02 0.016 17.2 1.5 14 35-48 9-22 (82)
3 d1js8a1 a.86.1.1 (A:2503-2791) 3.5 1.8E+02 0.013 22.4 1.4 14 99-112 190-203 (289)
4 d1lnla1 a.86.1.1 (A:-3-304) Mo 2.9 1.8E+02 0.013 22.4 0.8 14 99-112 205-218 (307)
5 d1z3aa1 c.97.1.2 (A:13-168) tR 2.9 2.1E+02 0.015 19.8 1.1 13 228-240 142-154 (156)
6 d1rp4a_ a.227.1.1 (A:) Endopla 2.6 3.7E+02 0.027 21.8 2.4 19 42-60 171-189 (374)
7 d1v54l_ f.23.6.1 (L:) Mitochon 2.3 6E+02 0.044 14.0 3.0 30 3-32 11-41 (46)
8 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.3 3.7E+02 0.027 16.6 1.6 16 79-94 48-63 (75)
9 d1bt3a_ a.86.1.2 (A:) Catechol 2.1 3.3E+02 0.024 21.4 1.4 14 99-112 264-277 (341)
10 d1izma_ a.199.1.1 (A:) Hypothe 1.8 4.9E+02 0.036 18.2 1.9 14 45-58 20-33 (170)
No 1
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.91 E-value=2.9e+02 Score=17.34 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=9.7
Q ss_pred ccchh-HHHHHHHHHH
Q 025888 6 SNSLN-FSTFFLMFYA 20 (246)
Q Consensus 6 ~~~~~-~~~~~~~f~~ 20 (246)
|..|+ +|..++.+.+
T Consensus 62 EiiWTiiP~lILi~ia 77 (90)
T d1v54b2 62 ETIWTILPAIILILIA 77 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 45677 6777766655
No 2
>d1zela1 a.4.5.83 (A:1-82) Hypothetical protein Rv2827c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.47 E-value=2.2e+02 Score=17.21 Aligned_cols=14 Identities=14% Similarity=-0.035 Sum_probs=9.9
Q ss_pred ccccCchhHHHHHh
Q 025888 35 KHRAEASSCFISLA 48 (246)
Q Consensus 35 ~~~~ew~nr~vS~~ 48 (246)
++-+.|.+|+||-+
T Consensus 9 rriptwasrvvsgl 22 (82)
T d1zela1 9 RRIPTWASRVVSGL 22 (82)
T ss_dssp CCCCGGGHHHHHHH
T ss_pred cccchHHHHHHhhh
Confidence 44567888888864
No 3
>d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]}
Probab=3.45 E-value=1.8e+02 Score=22.40 Aligned_cols=14 Identities=57% Similarity=0.781 Sum_probs=11.1
Q ss_pred ccCchHHHHHHHHH
Q 025888 99 TPRDILFILHHAAT 112 (246)
Q Consensus 99 ~~~~~~~l~HH~~~ 112 (246)
.+.|+.|.+||.-.
T Consensus 190 S~~DPiF~lHHani 203 (289)
T d1js8a1 190 TSYDPLFYLHHSNT 203 (289)
T ss_dssp GGGSTHHHHHHHHH
T ss_pred CcccHHHHHHHHHH
Confidence 46899999999543
No 4
>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]}
Probab=2.88 E-value=1.8e+02 Score=22.43 Aligned_cols=14 Identities=50% Similarity=0.795 Sum_probs=11.1
Q ss_pred ccCchHHHHHHHHH
Q 025888 99 TPRDILFILHHAAT 112 (246)
Q Consensus 99 ~~~~~~~l~HH~~~ 112 (246)
.+.|+.|.+||.-.
T Consensus 205 S~~DPiF~lHH~ni 218 (307)
T d1lnla1 205 ASYDPVFILHHSNT 218 (307)
T ss_dssp GGSSTHHHHHTTHH
T ss_pred CccchHHHHHHHHH
Confidence 46899999999443
No 5
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]}
Probab=2.88 E-value=2.1e+02 Score=19.75 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=7.6
Q ss_pred HHHHHHHhhcCCc
Q 025888 228 SNWIGWYRNLGYS 240 (246)
Q Consensus 228 ki~~g~~k~~~~~ 240 (246)
.+.+++++++++|
T Consensus 142 ~ll~~Ff~~~r~~ 154 (156)
T d1z3aa1 142 ALLSDFFRMRRQE 154 (156)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC
Confidence 4557777655433
No 6
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.57 E-value=3.7e+02 Score=21.84 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.4
Q ss_pred hHHHHHhhHHHHHHHHHHH
Q 025888 42 SCFISLAHGTPAVLLSSHA 60 (246)
Q Consensus 42 nr~vS~~Ha~v~~~la~~~ 60 (246)
.|+||-.||.+++=+|.-.
T Consensus 171 yrlISGlHsSIs~Hl~~~y 189 (374)
T d1rp4a_ 171 YRLVSGFHASIGTHLSKEY 189 (374)
T ss_dssp HHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4899999999998776543
No 7
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.29 E-value=6e+02 Score=14.03 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=17.2
Q ss_pred ccc-ccchhHHHHHHHHHHHHHHHHHHHHhc
Q 025888 3 PFR-SNSLNFSTFFLMFYALYVFAYFVVFRG 32 (246)
Q Consensus 3 ~~~-~~~~~~~~~~~~f~~~~~~~~~~~~~~ 32 (246)
||. ++.|-|-+-+..|...-+-++|++.|.
T Consensus 11 PFsv~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 11 PFSVENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHhccccchHHHHHH
Confidence 443 456776655555544445566777664
No 8
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.28 E-value=3.7e+02 Score=16.60 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025888 79 IVLEFSMAYFLMDLLH 94 (246)
Q Consensus 79 ~~l~~S~GYFi~Dl~~ 94 (246)
.+--+.++|.+||-..
T Consensus 48 v~PPfi~~Y~iy~W~~ 63 (75)
T d1ppjg_ 48 VAPPFVAFYLVYTWGT 63 (75)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHH
Confidence 3456778999988654
No 9
>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea batatas) [TaxId: 4120]}
Probab=2.09 E-value=3.3e+02 Score=21.45 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=11.2
Q ss_pred ccCchHHHHHHHHH
Q 025888 99 TPRDILFILHHAAT 112 (246)
Q Consensus 99 ~~~~~~~l~HH~~~ 112 (246)
...|..|.+||.-.
T Consensus 264 Sa~DPIF~lHHanI 277 (341)
T d1bt3a_ 264 AGRDIAFYCHHSNV 277 (341)
T ss_dssp GGGSTHHHHHHHHH
T ss_pred CCCChhHHHHHhhH
Confidence 46899999999544
No 10
>d1izma_ a.199.1.1 (A:) Hypothetical protein HI0817 {Haemophilus influenzae [TaxId: 727]}
Probab=1.82 E-value=4.9e+02 Score=18.15 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=11.7
Q ss_pred HHHhhHHHHHHHHH
Q 025888 45 ISLAHGTPAVLLSS 58 (246)
Q Consensus 45 vS~~Ha~v~~~la~ 58 (246)
-|-+||++++.+|.
T Consensus 20 psElHG~L~Gll~~ 33 (170)
T d1izma_ 20 ATELHGFLSGLLCG 33 (170)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 47789999999874
Done!