BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025889
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P4F|A Chain A, Crystal Structure Of Atp11 Functional Domain From Candida
Glabrata
Length = 299
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 16/119 (13%)
Query: 134 WKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVF 193
W+ +G T+ H L+T L +YK A P+ T F+ D A KD+VL+ G +
Sbjct: 186 WQFAGPNTV-------HCLITSLAEYKLHQDFAKPHTTIQFHLDLANDKDMVLMNGQVES 238
Query: 194 TSKLTDSEAEWLLETIQSFY--------LNDVRFKLVERFNKEARNFEFKDVLR-ALSM 243
S ++ +A+ LL +Q FY + R +L+E FNK ++NF+ +++ A SM
Sbjct: 239 DSNVSLQDAQLLLLNVQRFYGAMGSETSIAKERIQLLEDFNKGSQNFDINKLIQLAQSM 297
>pdb|2E5B|A Chain A, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5B|B Chain B, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5C|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5C|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5D|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
pdb|2E5D|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
Length = 499
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 179 AESKDLVLIRGDIVFTSKLTDSEAEWL---LETI--QSFY 213
A + V+ RG+++FT + TD E WL +ETI QS+Y
Sbjct: 126 AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQSWY 165
>pdb|2GVG|A Chain A, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|B Chain B, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|C Chain C, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|D Chain D, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|E Chain E, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
pdb|2GVG|F Chain F, Crystal Structure Of Human Nmprtase And Its Complex With
Nmn
Length = 491
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 179 AESKDLVLIRGDIVFTSKLTDSEAEWL---LETI--QSFY 213
A + V+ RG+++FT + TD E WL +ETI QS+Y
Sbjct: 118 AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQSWY 157
>pdb|3DGR|A Chain A, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DGR|B Chain B, Crystal Structure Of Human Nampt Complexed With Adp
Analogue
pdb|3DHD|A Chain A, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHD|B Chain B, Crystal Structure Of Human Nampt Complexed With
Nicotinamide Mononucleotide And Pyrophosphate
pdb|3DHF|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DHF|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Nicotinamide Mononucleotide And
Pyrophosphate
pdb|3DKJ|A Chain A, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKJ|B Chain B, Crystal Structure Of Human Nampt Complexed With Benzamide
And Phosphoribosyl Pyrophosphate
pdb|3DKL|A Chain A, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
pdb|3DKL|B Chain B, Crystal Structure Of Phosphorylated Mimic Form Of Human
Nampt Complexed With Benzamide And Phosphoribosyl
Pyrophosphate
Length = 484
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 179 AESKDLVLIRGDIVFTSKLTDSEAEWL---LETI--QSFY 213
A + V+ RG+++FT + TD E WL +ETI QS+Y
Sbjct: 118 AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQSWY 157
>pdb|2GVJ|A Chain A, Crystal Structure Of Human Nmprtase In Complex With Fk866
pdb|2GVJ|B Chain B, Crystal Structure Of Human Nmprtase In Complex With Fk866
Length = 491
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 179 AESKDLVLIRGDIVFTSKLTDSEAEWL---LETI--QSFY 213
A + V+ RG+++FT + TD E WL +ETI QS+Y
Sbjct: 118 AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQSWY 157
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 38 IQKQREKAIPCDFLKW 53
+ +KAIPCDF++W
Sbjct: 203 VMSSEDKAIPCDFIRW 218
>pdb|2H3B|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
pdb|2H3B|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
Length = 494
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 185 VLIRGDIVFTSKLTDSEAEWL---LETI--QSFY 213
V+ RG+++FT + TD E WL +ETI QS+Y
Sbjct: 127 VIPRGNVLFTVENTDPECYWLTNWIETILVQSWY 160
>pdb|2G95|A Chain A, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G95|B Chain B, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G96|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G96|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G97|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|2G97|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|3G8E|A Chain A, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
pdb|3G8E|B Chain B, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
Length = 491
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 185 VLIRGDIVFTSKLTDSEAEWL---LETI--QSFY 213
V+ RG+++FT + TD E WL +ETI QS+Y
Sbjct: 124 VIPRGNVLFTVENTDPECYWLTNWIETILVQSWY 157
>pdb|2GVL|A Chain A, Crystal Structure Of Murine Nmprtase
pdb|2GVL|B Chain B, Crystal Structure Of Murine Nmprtase
Length = 491
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 185 VLIRGDIVFTSKLTDSEAEWL---LETI--QSFY 213
V+ RG+++FT + TD E WL +ETI QS+Y
Sbjct: 124 VIPRGNVLFTVENTDPECYWLTNWIETILVQSWY 157
>pdb|2H3D|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
pdb|2H3D|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
Length = 494
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 185 VLIRGDIVFTSKLTDSEAEWL---LETI--QSFY 213
V+ RG+++FT + TD E WL +ETI QS+Y
Sbjct: 127 VIPRGNVLFTVENTDPECYWLTNWIETILVQSWY 160
>pdb|1RY0|A Chain A, Structure Of Prostaglandin F Synthase With Prostaglandin
D2
pdb|1RY0|B Chain B, Structure Of Prostaglandin F Synthase With Prostaglandin
D2
pdb|1RY8|A Chain A, Prostaglandin F Synthase Complexed With Nadph And Rutin
pdb|1RY8|B Chain B, Prostaglandin F Synthase Complexed With Nadph And Rutin
pdb|1XF0|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) Complexed With Delta4-
Androstene-3,17-Dione And Nadp
pdb|2F38|A Chain A, Crystal Structure Of Prostaglandin F Synathase Containing
Bimatoprost
pdb|1ZQ5|A Chain A, Crystal Structure Of Human Androgenic
17beta-Hydroxysteroid Dehydrogenase Type 5 In Complexed
With A Potent Inhibitor Em1404
pdb|2FGB|A Chain A, Crystal Structure Of Human 17bet A-Hydroxysteroid
Dehydrogenase Type 5 In Complexes With Peg And Nadp
pdb|4DBS|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3'-[(4-Nitronaphthalen-1-Yl) Amino]benzoic Acid
pdb|4DBS|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3'-[(4-Nitronaphthalen-1-Yl) Amino]benzoic Acid
pdb|4DBU|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3-((4 -(Trifluoromethyl)phenyl) Amino)benzoic Acid
pdb|4DBU|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 (Akr1c3) In Complex With Nadp+ And
3-((4 -(Trifluoromethyl)phenyl) Amino)benzoic Acid
Length = 323
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 141 TMFVQVQLPHILVTGLEDYKARGTQAA--PYFTASFYTDFAESKDLVLI 187
+ F + QL IL YK Q PYF S DF +SKD+VL+
Sbjct: 166 SNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLV 214
>pdb|1S1P|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase
(Akr1c3) In Complex With The Non-Steroidal Anti-
Inflammatory Drugs Flufenamic Acid And Indomethacin
pdb|1S1R|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase
(Akr1c3) In Complex With The Non-Steroidal Anti-
Inflammatory Drugs Flufenamic Acid And Indomethacin
pdb|1S2A|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase In
Complex With The Non-Steroidal Anti-Inflammatory Drugs
Flufenamic Acid And Indomethacin
pdb|1S2C|A Chain A, Crystal Structures Of Prostaglandin D2 11-Ketoreductase In
Complex With The Non-Steroidal Anti-Inflammatory Drugs
Flufenamic Acid And Indomethacin
Length = 331
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 141 TMFVQVQLPHILVTGLEDYKARGTQAA--PYFTASFYTDFAESKDLVLI 187
+ F + QL IL YK Q PYF S DF +SKD+VL+
Sbjct: 166 SNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLV 214
>pdb|3R43|A Chain A, Akr1c3 Complexed With Mefenamic Acid
pdb|3R58|A Chain A, Akr1c3 Complex With Naproxen
pdb|3R6I|A Chain A, Akr1c3 Complex With Meclofenamic Acid
pdb|3R7M|A Chain A, Akr1c3 Complex With Sulindac
pdb|3R8G|A Chain A, Akr1c3 Complex With Ibuprofen
pdb|3R8H|A Chain A, Akr1c3 Complex With Zomepirac
pdb|3R94|A Chain A, Akr1c3 Complex With Flurbiprofen
pdb|3UFY|A Chain A, Akr1c3 Complex With R-Naproxen
pdb|3UG8|A Chain A, Akr1c3 Complex With Indomethacin At Ph 7.5
pdb|3UGR|A Chain A, Akr1c3 Complex With Indomethacin At Ph 6.8
pdb|4FA3|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
(R)-1-(Naphthalen-2-Ylsulfonyl)piperidine-3- Carboxylic
Acid (86)
pdb|4FAL|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)-N-
Methylbenzamide (80)
pdb|4FAM|A Chain A, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)benzoic
Acid (17)
pdb|4FAM|B Chain B, Crystal Structure Of Human 17beta-Hydroxysteroid
Dehydrogenase Type 5 In Complex With
3-((3,4-Dihydroisoquinolin-2(1h)-Yl)sulfonyl)benzoic
Acid (17)
Length = 331
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 141 TMFVQVQLPHILVTGLEDYKARGTQAA--PYFTASFYTDFAESKDLVLI 187
+ F + QL IL YK Q PYF S DF +SKD+VL+
Sbjct: 166 SNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLV 214
>pdb|3UWE|A Chain A, Akr1c3 Complexed With 3-Phenoxybenzoic Acid
Length = 331
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 141 TMFVQVQLPHILVTGLEDYKARGTQAA--PYFTASFYTDFAESKDLVLI 187
+ F + QL IL YK Q PYF S DF +SKD+VL+
Sbjct: 166 SNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLV 214
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
pdb|2GQ0|B Chain B, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
Length = 303
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 153 VTGLEDYKAR---GTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETI 209
LEDY +R G + Y TA Y S L L+R + L+D EW++ +
Sbjct: 185 TVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYL 244
Query: 210 QSF 212
F
Sbjct: 245 TEF 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,709,697
Number of Sequences: 62578
Number of extensions: 256534
Number of successful extensions: 755
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 19
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)