BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025889
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5TC12|ATPF1_HUMAN ATP synthase mitochondrial F1 complex assembly factor 1 OS=Homo
sapiens GN=ATPAF1 PE=1 SV=1
Length = 328
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 8/219 (3%)
Query: 30 TTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKS 89
+ F P ++ I C K +LG +R GFT + K L SI +IE K+K+
Sbjct: 103 SEFRKQPVGHSRQGDFIKCVEQKTDALGKQSVNR---GFT--KDKTLSSIFNIEMVKEKT 157
Query: 90 AEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLP 149
AE++ IW Y + + A + + + L+ +R+ C F+ L + GY Q
Sbjct: 158 AEEIKQIWQQYFAAKDTVYAVIPAEKFDLIWNRAQSCPTFLCALPRREGYEFFVGQWTGT 217
Query: 150 HILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETI 209
+ T L + + RG AA Y + E K +VL+ ++ T L +EA+ + +
Sbjct: 218 ELHFTALINIQTRGEAAASQLILYHYPELKEEKGIVLMTAEMDSTF-LNVAEAQCIANQV 276
Query: 210 QSFYLNDVR--FKLVERFNKEARNFEFKDVLRALSMPLL 246
Q FY D + + LVE FN F++ V+ L L
Sbjct: 277 QLFYATDRKETYGLVETFNLRPNEFKYMSVIAELEQSGL 315
>sp|Q811I0|ATPF1_MOUSE ATP synthase mitochondrial F1 complex assembly factor 1 OS=Mus
musculus GN=Atpaf1 PE=2 SV=1
Length = 324
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 8/219 (3%)
Query: 30 TTFTVNPTIQKQREKAIPCDFLKWSSLGLYRTSRFATGFTPLQPKPLDSIIDIERAKDKS 89
+ F P ++ I C K +LG S+ GFT + K L S+ ++E KDK+
Sbjct: 99 SEFRKQPVGHSKQSDFIKCMEQKTDALGKQPVSK---GFT--KDKTLSSVFNVEMVKDKT 153
Query: 90 AEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLP 149
AE++ IW Y + + A + + + L+ +R+ C F+ L + GY Q
Sbjct: 154 AEEIKQIWQQYFSAKDTVYAVIPKEKFDLIWNRAQSCPTFLCALPRRDGYEFFVGQWTGT 213
Query: 150 HILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETI 209
+ T L + + RG AA Y + E K +VL+ ++ T L EA+ + +
Sbjct: 214 ELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMTAEMDSTF-LNVVEAQCIANQV 272
Query: 210 QSFYLNDVR--FKLVERFNKEARNFEFKDVLRALSMPLL 246
Q FY D + + LVE FN F++ V+ L L
Sbjct: 273 QLFYATDRKEIYGLVETFNFRPNEFKYMSVIAELEQSGL 311
>sp|Q66JD1|ATPF1_XENTR ATP synthase mitochondrial F1 complex assembly factor 1 OS=Xenopus
tropicalis GN=atpaf1 PE=2 SV=1
Length = 303
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 17/210 (8%)
Query: 51 LKWSSLGLYRTSRFAT------------GFTPLQPKPLDSIIDIERAKDKSAEDLATIWD 98
LK LG + + FA GF+ + K LDSI++IE KDK A+++ IW
Sbjct: 80 LKQQPLGYSKQAEFAKTVEEKVGTASGKGFS--KNKTLDSILNIELIKDKDADEIREIWK 137
Query: 99 DYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLED 158
Y R + A + + + L+ R+ C F+ L + GY Q + T L +
Sbjct: 138 QYFSLRNSVYAVIPGESFELIWRRAKTCPSFLYALPRKEGYEFFVGQWSGSELHFTALIN 197
Query: 159 YKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVR 218
+ G A Y +F + K +VL+ +I T L +A+ L +Q FY +D
Sbjct: 198 IQTAGDAAPSQLILYHYPEFQKDKGIVLMTSEID-TKFLNVQDAQCLANQVQLFYGSDGA 256
Query: 219 --FKLVERFNKEARNFEFKDVLRALSMPLL 246
F LVE+FN ++ F++ V+ L L
Sbjct: 257 ETFGLVEKFNHKSDEFKYMAVVSFLEQSGL 286
>sp|P87127|ATP11_SCHPO Protein atp11, mitochondrial OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=atp11 PE=3 SV=1
Length = 286
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 15/181 (8%)
Query: 76 LDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADCRYFVIPLWK 135
L+ ID+E+ K+ + +W ++G + A + ++Y + R+ YFV+PL +
Sbjct: 106 LNRYIDVEKIKELPTSTIEKLWRARNIGDDILSACIPKEIYEKMLSRARMYPYFVLPLPR 165
Query: 136 G-SGYATMFVQVQLP-----HILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRG 189
G G + F+Q P H+LVT L +YK +G+ AAP+ + D K + L+R
Sbjct: 166 GDKGIESHFLQWNFPNKNEAHLLVTSLLEYKLKGSYAAPHTIMLHFADLLNLKGITLMRC 225
Query: 190 DIVFTSKLTDSEAEWLLETIQSFY-------LNDVRFKLVERFNKEARNFEFKDVLRALS 242
KL+ ++ + L+ IQ FY L R L+ F+K A +F+ V +
Sbjct: 226 QFE-PKKLSANDVQLLVLAIQKFYNASENTPLGKERLALLAAFSKGA-DFDLHKVATHMD 283
Query: 243 M 243
M
Sbjct: 284 M 284
>sp|Q1L987|ATPF1_DANRE ATP synthase mitochondrial F1 complex assembly factor 1 OS=Danio
rerio GN=atpaf1 PE=2 SV=2
Length = 302
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 7/178 (3%)
Query: 67 GFTPLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRSADC 126
GFT + K L SI+++E ++KS ++ +W Y + I A + + + ++ R+ C
Sbjct: 117 GFT--KDKTLGSILNLEMVQEKSGAEITELWMQYFSKKDTISAVIPSSTFDVIFGRAKSC 174
Query: 127 RYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVL 186
F+ L + GY Q + T L + + G A YTD + KD+VL
Sbjct: 175 PTFLYALPQNEGYEFFVGQWAGNELHFTSLINVQTMGENAPSQLILYHYTDLQKDKDIVL 234
Query: 187 IRGDIVFTSK-LTDSEAEWLLETIQSFYLND--VRFKLVERFNKEARNFEFKDVLRAL 241
+ ++ SK +T +A+ L +Q FY + F+LVE FN + F+ V+ L
Sbjct: 235 MTAEM--DSKFVTVHQAQCLANQVQLFYGSQRLETFRLVETFNHKPEEFKHMAVIAEL 290
>sp|P32453|ATP11_YEAST Protein ATP11, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ATP11 PE=1 SV=1
Length = 318
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 69 TPLQP-------KPLDSIIDIERAKDKSAEDLATIWDDYHLGRGH-ICASLKTQLYRLLE 120
+PL P K LDS +D+ + KD S +++ +W + + +CA + +Y +
Sbjct: 109 SPLDPSAPKVPFKTLDSFLDVGKLKDLSKQEVEFLWRARWAQKDNTLCAVIPVSVYDKMM 168
Query: 121 HRSADCRYFVIPLWKG-----------SGYATMFVQ-----VQLPHILVTGLEDYKARGT 164
+ + FV+PL + G ++Q Q H ++T L +YK
Sbjct: 169 ANARNNPIFVLPLPRQVQSEDAKPNEEQGMELHYIQWQFVGPQTTHCMMTSLAEYKLHQE 228
Query: 165 QAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFY 213
A P+ T F++D + K +V + G + + + +A+ LL +Q FY
Sbjct: 229 FARPHTTLQFHSDLVKDKGIVFMNGHVEPDTNVNVQDAQLLLLNVQRFY 277
>sp|Q9US44|YIZG_SCHPO Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1
Length = 499
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 112 KTQLYRLLEHRSADCRY----FVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAA 167
K LY L E C Y F+ + G GY ++ VQ + + G AA
Sbjct: 287 KVYLYALSEFGQDTCLYGFSTFLPAIISGMGYTSLSVQYMTIPVYILG----------AA 336
Query: 168 PYFTASFYTDFAESKDLVLIRGDI 191
Y ASF +D + ++LI G+I
Sbjct: 337 TYIAASFLSDRFHHRGIILIIGNI 360
>sp|P38229|GIP1_YEAST GLC7-interacting protein 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIP1 PE=1 SV=2
Length = 639
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 157 EDYKARGTQAAPYFTASFYTDFA--ESKDLVLIRGDIVFTSKLTDSEAEWLLETIQS 211
E+Y+ RG Q + Y++ + DFA E +D V + DI+ + + T+ L+ I S
Sbjct: 570 ENYRLRGEQLSKYYSEEYPLDFAAVECEDSVNDKSDIILSMRATERNIGRQLKGISS 626
>sp|Q8W4C3|PARNL_ARATH Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana
GN=At3g25430 PE=2 SV=1
Length = 618
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 51/140 (36%), Gaps = 21/140 (15%)
Query: 89 SAEDLATIWDDYHLGRGHICASLKTQLYRLLEH----RSADCRYF-----VIPLWKGSGY 139
S+E+L IW LG+ A LK L + H R D +Y ++ W+
Sbjct: 481 SSENLVFIWG---LGKKMTAAKLKNVLQK--SHPVFAREFDVKYIDRSSAILVFWESGPS 535
Query: 140 ATMFVQVQLPHILVTGLEDYKARGTQAAPYFT-------ASFYTDFAESKDLVLIRGDIV 192
T V L L + A G + A Y T + D AES D L D
Sbjct: 536 ETFLSAVNNEEQLDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSDTD 595
Query: 193 FTSKLTDSEAEWLLETIQSF 212
S SE +W E +F
Sbjct: 596 PDSDTKPSEIDWSNELAINF 615
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,467,297
Number of Sequences: 539616
Number of extensions: 3429531
Number of successful extensions: 9526
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9518
Number of HSP's gapped (non-prelim): 11
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)