Query 025889
Match_columns 246
No_of_seqs 111 out of 200
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:43:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3281 Mitochondrial F1-ATPas 100.0 3E-68 6.5E-73 476.3 15.5 206 40-246 61-273 (273)
2 PF06644 ATP11: ATP11 protein; 100.0 7.9E-69 1.7E-73 486.5 11.1 171 71-241 82-266 (266)
3 KOG2650 Zinc carboxypeptidase 57.7 47 0.001 32.9 7.8 95 95-226 116-214 (418)
4 PF10105 DUF2344: Uncharacteri 44.0 15 0.00033 32.1 1.9 33 71-103 55-87 (187)
5 COG5220 TFB3 Cdk activating ki 37.8 19 0.00041 33.9 1.5 28 216-243 83-115 (314)
6 COG5241 RAD10 Nucleotide excis 36.8 29 0.00062 31.5 2.5 47 196-246 174-224 (224)
7 PRK05218 heat shock protein 90 32.6 81 0.0018 32.4 5.3 101 82-214 349-463 (613)
8 cd07316 terB_like_DjlA N-termi 31.6 1.2E+02 0.0027 22.7 5.0 49 194-242 13-63 (106)
9 PHA02839 Il-24-like protein; P 27.4 20 0.00043 31.0 -0.1 34 180-215 47-80 (156)
10 PF07179 SseB: SseB protein N- 27.3 1.8E+02 0.0039 22.0 5.3 63 116-180 16-94 (124)
11 COG0396 sufC Cysteine desulfur 27.0 45 0.00098 31.1 2.1 72 116-195 152-227 (251)
12 cd07313 terB_like_2 tellurium 24.3 1.2E+02 0.0026 22.9 3.7 48 195-242 14-64 (104)
13 PRK14083 HSP90 family protein; 23.2 1.6E+02 0.0035 30.4 5.5 95 82-215 329-434 (601)
No 1
>KOG3281 consensus Mitochondrial F1-ATPase assembly protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-68 Score=476.28 Aligned_cols=206 Identities=34% Similarity=0.525 Sum_probs=198.0
Q ss_pred hhcccCCC--cccccccccccccccccccCCCCCC---CCCChhhhchhhhccCCHHHHHHHHHHHhcCCCceeEeechH
Q 025889 40 KQREKAIP--CDFLKWSSLGLYRTSRFATGFTPLQ---PKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQ 114 (246)
Q Consensus 40 ~~~~~~~~--~~~~~~~~~~~~~~~~~~sgFs~p~---~K~L~sIvklell~~~s~eeI~~IW~~yH~~k~~i~AvIp~~ 114 (246)
|++++.-+ ++...|...+-+...+|++|+++.+ .|+|||||||++++++|++||++||++||++|+.+|||||++
T Consensus 61 kl~e~~~~~~g~~~~~~~~~~v~~Ks~s~~~~s~~k~~~K~L~simdve~iKeks~eEi~qiW~~~~a~kdtl~Avip~e 140 (273)
T KOG3281|consen 61 KLSEPVKNLLGKSQTKERSKVVPKKSFSAGKQSVGKSPLKTLDSIMDVEKIKEKSAEEIEQIWRARNAGKDTLSAVIPKE 140 (273)
T ss_pred hhhhhhcchhhhhhhhhhhccccccccccccCccCcCCCccHHHHHhHHHHcccCHHHHHHHHHHHhccccceeeeccHH
Confidence 67777777 8999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCceeeeccCCCCeeEEEEeeeCCeEEEeehHHHHhcCCCCCCeEEEEeehhhcccCCeEEEeeeeecC
Q 025889 115 LYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFT 194 (246)
Q Consensus 115 ~Y~~m~~rAk~~P~FVlPlpR~~Gye~~~~Q~q~~~vlfT~L~eYK~~ge~A~P~ltlthytELa~sKgIVLmrGdi~~~ 194 (246)
.|+.|.+||+.||+||+||||++|||++..||..+|||||+|+|||+|||+|+||+|++||+||.++||||||||+++ +
T Consensus 141 ~yd~mmsrAr~~P~FvlpLPR~e~~ef~~~qF~~~hl~fTsLleYk~~ge~Aap~ltl~hyteL~e~KGIVlMrge~e-~ 219 (273)
T KOG3281|consen 141 IYDKMMSRARMYPYFVLPLPRGEGGEFFQWQFPAPHLHFTSLLEYKLRGEYAAPHLTLLHYTELLELKGIVLMRGEVE-P 219 (273)
T ss_pred HHHHHHHHhhcCCeeeeccccccCceEEEEEccCCeeEeeHHHHHHhhccccCcceeeeehhhHhhccCeEEEecccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCCHHHHHHHHHHHHHhccccch--hhHHHHhhCCCCCCCHHHHHHHhCCCCC
Q 025889 195 SKLTDSEAEWLLETIQSFYLNDVR--FKLVERFNKEARNFEFKDVLRALSMPLL 246 (246)
Q Consensus 195 ~~ls~~EAq~Lv~~lQ~FY~~~~r--~~LVe~FN~~p~eFd~~~li~el~~~~~ 246 (246)
++||++|||||++++|+||+.++. ++||++||++|.+|++++||.+++|+-+
T Consensus 220 ~~Lt~qeAQ~l~~~vQ~FY~~~~~~t~~LL~~Fsk~p~dF~~~~vi~~ld~~~l 273 (273)
T KOG3281|consen 220 KKLTAQEAQLLALAVQKFYLADEEETLALLETFSKGPADFKLMKVITELDMLEL 273 (273)
T ss_pred ccccHHHHHHHHHHHHHHHcCCcchHHHHHHHHhcCCCcccHHHHHHHHhhccC
Confidence 699999999999999999998765 9999999999999999999999999854
No 2
>PF06644 ATP11: ATP11 protein; InterPro: IPR010591 This family consists of several eukaryotic ATP11 proteins. The expression of functional F1-ATPase requires two proteins which are encoded by the ATP11 and ATP12 genes []. Atp11p is a molecular chaperone of the mitochondrial matrix that participates in the biogenesis pathway to form F1, which is the catalytic unit of ATP synthase. It binds to the free beta subunits of F1, which prevents the beta subunit from associating with itself in non-productive complex. It also allows for the formation of a (alpha beta)3 hexamer []. ; GO: 0006461 protein complex assembly, 0005739 mitochondrion; PDB: 2P4F_A.
Probab=100.00 E-value=7.9e-69 Score=486.51 Aligned_cols=171 Identities=40% Similarity=0.723 Sum_probs=143.6
Q ss_pred CCCCCChhhhchhhhccCCHHHHHHHHHHHhc-CCCceeEeechHHHHHHHHHhhcCCceeeeccCC-CCeeEEEEeee-
Q 025889 71 LQPKPLDSIIDIERAKDKSAEDLATIWDDYHL-GRGHICASLKTQLYRLLEHRSADCRYFVIPLWKG-SGYATMFVQVQ- 147 (246)
Q Consensus 71 p~~K~L~sIvklell~~~s~eeI~~IW~~yH~-~k~~i~AvIp~~~Y~~m~~rAk~~P~FVlPlpR~-~Gye~~~~Q~q- 147 (246)
+++|+|||||||||+++++++||++||++||. ++++||||||+++|++|..||++||+|||||||+ +|||+||+||+
T Consensus 82 ~~~K~L~~il~lek~~~~~~~eI~~iW~~~h~~~~~~l~AvIp~~~y~~m~~~A~~~P~FVlPlPr~~~Gye~~~~Qw~f 161 (266)
T PF06644_consen 82 SPPKPLDSILKLEKLKDLSPEEIEFIWRAYHANKKDSLCAVIPAETYDKMEARAKKCPQFVLPLPRPDEGYEFHFLQWQF 161 (266)
T ss_dssp -SS--HHHHS-HHHHTTS-HHHHHHHHHHHTTT-SSEEEEEEETTTHHHHHHHHHH--EEEEEEE-----EEEEEEEEEE
T ss_pred CCCCcHHHHhCHHHHccCCHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhCCcceecCCCCCCceEEEEEEEec
Confidence 45799999999999999999999999999999 5679999999999999999999999999999999 99999999999
Q ss_pred ----CCeEEEeehHHHHhcCCCCCCeEEEEeehhhcccCCeEEEeeeeecCCCCCHHHHHHHHHHHHHhc-------ccc
Q 025889 148 ----LPHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFY-------LND 216 (246)
Q Consensus 148 ----~~~vlfT~L~eYK~~ge~A~P~ltlthytELa~sKgIVLmrGdi~~~~~ls~~EAq~Lv~~lQ~FY-------~~~ 216 (246)
++|||||+|+|||+||++|+||+|||||+||+++||||||||+|+++.+||++|||||++++|+|| .++
T Consensus 162 ~~~~~~~~lfT~L~eYK~~~e~A~P~ltlthy~eLa~~KgiVLmrG~i~~~~~ls~~eAq~L~~~lQ~FY~~~~~~~~~~ 241 (266)
T PF06644_consen 162 PGPNTSHVLFTSLAEYKLHGEFAQPHLTLTHYTELAESKGIVLMRGEIDPDSGLSKQEAQLLVNQLQRFYAAGEEGEDDK 241 (266)
T ss_dssp EETTEEEEEEEETTTTTT-HHHHS-SEEEEEE-TTHHHH-EEEEEEEE-TTSS--HHHHHHHHHHHHHHTGGG--SHHHH
T ss_pred CCCCCCEEEEeeHHHHhhCcccCCceEEeeehHhHhhcCCeEEEeeeecCCCCCCHHHHHHHHHHHHHHhcccccccccH
Confidence 889999999999999999999999999999999999999999999877799999999999999999 446
Q ss_pred chhhHHHHhhCCCCCCCHHHHHHHh
Q 025889 217 VRFKLVERFNKEARNFEFKDVLRAL 241 (246)
Q Consensus 217 ~r~~LVe~FN~~p~eFd~~~li~el 241 (246)
++++||++||++|++||+++||++.
T Consensus 242 ~~~~ll~~Fn~~p~~F~~~~li~ea 266 (266)
T PF06644_consen 242 ERYKLLETFNKGPEEFDVEDLIEEA 266 (266)
T ss_dssp HHHHHHHHHHHT-TT--HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHhcC
Confidence 7999999999999999999999974
No 3
>KOG2650 consensus Zinc carboxypeptidase [Function unknown]
Probab=57.65 E-value=47 Score=32.93 Aligned_cols=95 Identities=18% Similarity=0.349 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCceeEeechHHHHHHHHHhhcCC--ceeeeccCC-CCeeEEEEeeeCCeEEEeehHHHHhcCCCCCCeEE
Q 025889 95 TIWDDYHLGRGHICASLKTQLYRLLEHRSADCR--YFVIPLWKG-SGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFT 171 (246)
Q Consensus 95 ~IW~~yH~~k~~i~AvIp~~~Y~~m~~rAk~~P--~FVlPlpR~-~Gye~~~~Q~q~~~vlfT~L~eYK~~ge~A~P~lt 171 (246)
..|..||.-+ +.|+-|..-+.++| ..++.+-+. +|.....+......
T Consensus 116 ~~~~~Y~~le---------~I~~~l~~l~~~~P~~v~~~~IG~s~EgR~i~~lkIs~~~--------------------- 165 (418)
T KOG2650|consen 116 FNWERYHSLE---------EIYEWLDNLAERYPDLVSLIHIGRSYEGRPLKVLKISGGD--------------------- 165 (418)
T ss_pred ccHHHhcCHH---------HHHHHHHHHHHhCCCceEEEEcccccCCceEEEEEecCCC---------------------
Confidence 5588888654 67899999999999 455555554 46555554443221
Q ss_pred EEeehhhcccCCeEEEeeeeecCCCCCHHHHHHHHHHHHHhccccch-hhHHHHhh
Q 025889 172 ASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLNDVR-FKLVERFN 226 (246)
Q Consensus 172 lthytELa~sKgIVLmrGdi~~~~~ls~~EAq~Lv~~lQ~FY~~~~r-~~LVe~FN 226 (246)
..+|..|.|-|=|=.-.=|+.+-|.+++++|..-|+.+.. .++|+.++
T Consensus 166 -------~~~k~~I~id~GiHAREWIspAta~~~i~qLv~~y~~~~~~~~ll~~~d 214 (418)
T KOG2650|consen 166 -------NRNKKAIFIDAGIHAREWISPATALWFINQLVSSYGRDPAVTKLLDKLD 214 (418)
T ss_pred -------CCCCceEEEecchhHHhhccHHHHHHHHHHHHhhhccCHHHHHHHhcCc
Confidence 4678899998887544469999999999999999987654 46777764
No 4
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=44.02 E-value=15 Score=32.08 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=28.6
Q ss_pred CCCCCChhhhchhhhccCCHHHHHHHHHHHhcC
Q 025889 71 LQPKPLDSIIDIERAKDKSAEDLATIWDDYHLG 103 (246)
Q Consensus 71 p~~K~L~sIvklell~~~s~eeI~~IW~~yH~~ 103 (246)
.|.-.+.+++++++.++.+++++.+=.++..-.
T Consensus 55 vGv~S~~E~~di~l~~~~~~~~~~~rLn~~lP~ 87 (187)
T PF10105_consen 55 VGVESLAEYMDIELEEDIDPEEVLERLNAVLPE 87 (187)
T ss_pred CceeeccEEEEEEEecCCCHHHHHHHHHHhCCC
Confidence 477899999999999999999999888876544
No 5
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=37.76 E-value=19 Score=33.87 Aligned_cols=28 Identities=39% Similarity=0.676 Sum_probs=24.3
Q ss_pred cchhhHHHHhhCCCCCCC-----HHHHHHHhCC
Q 025889 216 DVRFKLVERFNKEARNFE-----FKDVLRALSM 243 (246)
Q Consensus 216 ~~r~~LVe~FN~~p~eFd-----~~~li~el~~ 243 (246)
+-|.++++.||++.++|+ |+|++++++.
T Consensus 83 dvRkr~~r~Fnk~~~eF~gdl~~YNdYLEevE~ 115 (314)
T COG5220 83 DVRKRLLRAFNKEEEEFGGDLAKYNDYLEEVEE 115 (314)
T ss_pred hHHHHHHHHhccchhhhCccHHHHHHHHHHHHH
Confidence 347789999999999999 8999998863
No 6
>COG5241 RAD10 Nucleotide excision repair endonuclease NEF1, RAD10 subunit [DNA replication, recombination, and repair]
Probab=36.81 E-value=29 Score=31.45 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHH---HHHHhcccc-chhhHHHHhhCCCCCCCHHHHHHHhCCCCC
Q 025889 196 KLTDSEAEWLLE---TIQSFYLND-VRFKLVERFNKEARNFEFKDVLRALSMPLL 246 (246)
Q Consensus 196 ~ls~~EAq~Lv~---~lQ~FY~~~-~r~~LVe~FN~~p~eFd~~~li~el~~~~~ 246 (246)
++++.+++-+++ .|++|.+.. .-+++++-||.. +.+++|+.++||.|
T Consensus 174 ~Vnksds~~~L~d~g~L~rf~gaSrdE~e~l~g~g~~----ka~~~ieyln~pFm 224 (224)
T COG5241 174 IVNKSDSEDTLNDIGKLCRFNGASRDEFELLLGFGFE----KAAKYIEYLNLPFM 224 (224)
T ss_pred eeccccHHHHHHHHHHHHHHhccchhHHHHHHccCHH----HHHHHHHHhcccCC
Confidence 467778888886 478888863 467888888876 57899999999976
No 7
>PRK05218 heat shock protein 90; Provisional
Probab=32.65 E-value=81 Score=32.44 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=61.2
Q ss_pred hhhhccCCHHHHHHHHHHHhcC-CCceeEeechHHHHHHHHHhhcCCceeeeccCCCCeeEEEEeeeCC-eEEEeehHHH
Q 025889 82 IERAKDKSAEDLATIWDDYHLG-RGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLP-HILVTGLEDY 159 (246)
Q Consensus 82 lell~~~s~eeI~~IW~~yH~~-k~~i~AvIp~~~Y~~m~~rAk~~P~FVlPlpR~~Gye~~~~Q~q~~-~vlfT~L~eY 159 (246)
|..+.+..++.-+++|+.||.. |. +++-..+.++++..-.+ |.+. .--+|+|+||
T Consensus 349 l~~la~~d~~~y~~f~~~~~~~lK~--g~~~D~~~~~~~~~lL~---------------------f~ts~~~~~~sL~ey 405 (613)
T PRK05218 349 LEKLAKNDREKYEKFWKEFGPVLKE--GLYEDFANREKLAKLLR---------------------FASTHEGKYVSLAEY 405 (613)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHh--hhhccHHHHHHHHhhce---------------------eeecCCCCcccHHHH
Confidence 3445567899999999999886 42 23344555665554321 1111 0126899999
Q ss_pred HhcCCCC--CCeEEEEe---------ehhhcccCCe-EEEeeeeecCCCCCHHHHHHHHHHHHHhcc
Q 025889 160 KARGTQA--APYFTASF---------YTDFAESKDL-VLIRGDIVFTSKLTDSEAEWLLETIQSFYL 214 (246)
Q Consensus 160 K~~ge~A--~P~ltlth---------ytELa~sKgI-VLmrGdi~~~~~ls~~EAq~Lv~~lQ~FY~ 214 (246)
..+-..- .-|.+..- |-|.+.+||+ ||.=++..|. .++.++..|.+
T Consensus 406 ~~rm~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~~g~eVl~~~~~~De---------~~l~~l~~~~~ 463 (613)
T PRK05218 406 VERMKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDE---------FWISYLEEFDG 463 (613)
T ss_pred HHhCcCCCceEEEEeCCCHHHHHhChHHHHHHhcCceEEEeCCccHH---------HHHHHHHHhcC
Confidence 7772111 23333333 6678888999 6666665531 47788888874
No 8
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=31.64 E-value=1.2e+02 Score=22.66 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcccc-chhhHHHHhhCCC-CCCCHHHHHHHhC
Q 025889 194 TSKLTDSEAEWLLETIQSFYLND-VRFKLVERFNKEA-RNFEFKDVLRALS 242 (246)
Q Consensus 194 ~~~ls~~EAq~Lv~~lQ~FY~~~-~r~~LVe~FN~~p-~eFd~~~li~el~ 242 (246)
+..++..|.+.+-..+.+++..+ ...++.+.|+..- ..+++.++.+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFR 63 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 35799999999999999988753 4556888888743 3488888877653
No 9
>PHA02839 Il-24-like protein; Provisional
Probab=27.38 E-value=20 Score=31.03 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=30.2
Q ss_pred ccCCeEEEeeeeecCCCCCHHHHHHHHHHHHHhccc
Q 025889 180 ESKDLVLIRGDIVFTSKLTDSEAEWLLETIQSFYLN 215 (246)
Q Consensus 180 ~sKgIVLmrGdi~~~~~ls~~EAq~Lv~~lQ~FY~~ 215 (246)
+.+|+-|++.++.. .++..|-=|+++.+.+||.+
T Consensus 47 ~~~~VRILr~evLq--nIq~aE~CCflr~LLrFYLD 80 (156)
T PHA02839 47 VDHNLRILTPALLN--NITVSETCFFIYDMFELYLN 80 (156)
T ss_pred cccceEEcCHHHHh--cCCccceeHHHHHHHHHHHH
Confidence 45899999999874 79999999999999999976
No 10
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=27.25 E-value=1.8e+02 Score=22.02 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCceeeeccCCCC-----------eeEEEEeeeC---C--eEEEeehHHHHhcCCCCCCeEEEEeehhhc
Q 025889 116 YRLLEHRSADCRYFVIPLWKGSG-----------YATMFVQVQL---P--HILVTGLEDYKARGTQAAPYFTASFYTDFA 179 (246)
Q Consensus 116 Y~~m~~rAk~~P~FVlPlpR~~G-----------ye~~~~Q~q~---~--~vlfT~L~eYK~~ge~A~P~ltlthytELa 179 (246)
...+...-.+ -.|++|+.-+.. -++.+..+.+ . -.+||+.++++.......+++.++ |.+|+
T Consensus 16 ~~~~~~~L~~-a~~lvpv~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~lpvFTs~e~l~~~~~~~~~~~~~~-~~~l~ 93 (124)
T PF07179_consen 16 EEAFLEALLK-AEVLVPVDVDDDDEGGEIEFDDDSEIQFLTLEDPDGERYLPVFTSWEELEKWYPDERPIIVVP-FEDLL 93 (124)
T ss_pred HHHHHHHHhh-CeEEEEEecccccccccccccCCCcceeEEEEcCCCCEEEEEECCHHHHHhhhcccCceeccc-HHHHH
Confidence 3344444433 456666655322 3555555542 2 359999999999999777775554 56665
Q ss_pred c
Q 025889 180 E 180 (246)
Q Consensus 180 ~ 180 (246)
+
T Consensus 94 ~ 94 (124)
T PF07179_consen 94 E 94 (124)
T ss_pred H
Confidence 4
No 11
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.96 E-value=45 Score=31.07 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCceeeeccCCCCeeEEEEeeeCCeEEEeehHHHHhcCCCCCCeEEEEeehhhcc----cCCeEEEeeee
Q 025889 116 YRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYKARGTQAAPYFTASFYTDFAE----SKDLVLIRGDI 191 (246)
Q Consensus 116 Y~~m~~rAk~~P~FVlPlpR~~Gye~~~~Q~q~~~vlfT~L~eYK~~ge~A~P~ltlthytELa~----sKgIVLmrGdi 191 (246)
=..+.+-+--.|-+++==--++|...- .-.++-..+.+|+.. -.-.+++|||.++++ ++--||++|.|
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDId-----alk~V~~~i~~lr~~---~~~~liITHy~rll~~i~pD~vhvl~~GrI 223 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDID-----ALKIVAEGINALREE---GRGVLIITHYQRLLDYIKPDKVHVLYDGRI 223 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHH-----HHHHHHHHHHHHhcC---CCeEEEEecHHHHHhhcCCCEEEEEECCEE
Confidence 344666667777776654444552211 002233334445433 456799999999987 55679999999
Q ss_pred ecCC
Q 025889 192 VFTS 195 (246)
Q Consensus 192 ~~~~ 195 (246)
+...
T Consensus 224 v~sG 227 (251)
T COG0396 224 VKSG 227 (251)
T ss_pred EecC
Confidence 9643
No 12
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=24.25 E-value=1.2e+02 Score=22.91 Aligned_cols=48 Identities=4% Similarity=0.050 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHhcc-c-cchhhHHHHhhCCC-CCCCHHHHHHHhC
Q 025889 195 SKLTDSEAEWLLETIQSFYL-N-DVRFKLVERFNKEA-RNFEFKDVLRALS 242 (246)
Q Consensus 195 ~~ls~~EAq~Lv~~lQ~FY~-~-~~r~~LVe~FN~~p-~eFd~~~li~el~ 242 (246)
..++.+|.+.+-..+++-|. + .++-++++.|+.+- +.+++.++.+.+.
T Consensus 14 G~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 14 GEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred CCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46899999999999998554 4 35667889998865 4588888887764
No 13
>PRK14083 HSP90 family protein; Provisional
Probab=23.18 E-value=1.6e+02 Score=30.39 Aligned_cols=95 Identities=20% Similarity=0.230 Sum_probs=58.0
Q ss_pred hhhhccCCHHHHHHHHHHHhcC-CCceeEeechHHHHHHHHHhhcCCceeeeccCCCCeeEEEEeeeCCeEEEeehHHHH
Q 025889 82 IERAKDKSAEDLATIWDDYHLG-RGHICASLKTQLYRLLEHRSADCRYFVIPLWKGSGYATMFVQVQLPHILVTGLEDYK 160 (246)
Q Consensus 82 lell~~~s~eeI~~IW~~yH~~-k~~i~AvIp~~~Y~~m~~rAk~~P~FVlPlpR~~Gye~~~~Q~q~~~vlfT~L~eYK 160 (246)
|+.+.+..++.-.++|.+|+.. |. +++-..+.++++..-.+ ..-..| .|+|+||-
T Consensus 329 L~~la~~d~e~y~~f~~~~g~~lK~--g~~~D~~~~~~l~~lL~--------f~ss~~--------------~~sL~eY~ 384 (601)
T PRK14083 329 LIGLATTDPERLRRLLAVHHLGVKA--LASHDDELLRLILPWLP--------FETTDG--------------RMTLAEIR 384 (601)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHH--HHhcCHHHHHHHHHhce--------eecCCC--------------CcCHHHHH
Confidence 4555677999999999999876 53 22244555666555331 111112 27999998
Q ss_pred hcCCCCCCeEEEEeehh---------hcccCCe-EEEeeeeecCCCCCHHHHHHHHHHHHHhccc
Q 025889 161 ARGTQAAPYFTASFYTD---------FAESKDL-VLIRGDIVFTSKLTDSEAEWLLETIQSFYLN 215 (246)
Q Consensus 161 ~~ge~A~P~ltlthytE---------La~sKgI-VLmrGdi~~~~~ls~~EAq~Lv~~lQ~FY~~ 215 (246)
.+.. .|.+-+. .+..||+ ||.-++.+| ..++..+...|.+
T Consensus 385 ~r~~------~IyY~~~~~~~~~~~~~~~~kg~eVl~~~~~iD---------e~~l~~l~~~~~~ 434 (601)
T PRK14083 385 RRHG------VIRYTSSVDEFRQLAPIARAQGMGVINGGYTYD---------SELLERLPRLRPG 434 (601)
T ss_pred HhCC------eEEEEcCHHHHHHHHHHHHHCCCeEEEeCCccH---------HHHHHHHHhhCCC
Confidence 8852 2322222 3677898 666666554 1477778776754
Done!