Query 025889
Match_columns 246
No_of_seqs 111 out of 200
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 19:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p4f_A Similar to SP|P32453 sa 100.0 8.7E-68 3E-72 484.8 13.9 174 70-243 96-296 (299)
2 2lv7_A Calcium-binding protein 26.7 97 0.0033 22.4 4.8 48 194-241 50-98 (100)
3 1wlz_A DJBP, CAP-binding prote 22.5 70 0.0024 22.2 3.2 49 194-242 38-87 (105)
4 2kz2_A Calmodulin, CAM; TR2C, 20.4 1.1E+02 0.0038 21.3 3.9 49 194-242 43-92 (94)
5 3li6_A Calcium-binding protein 20.3 1.6E+02 0.0056 18.1 5.0 49 194-242 14-63 (66)
6 1qx2_A Vitamin D-dependent cal 18.9 1.3E+02 0.0043 19.2 3.7 47 195-241 22-71 (76)
7 2lv7_A Calcium-binding protein 16.3 1.9E+02 0.0063 20.8 4.4 52 72-123 14-65 (100)
8 2ou3_A Tellurite resistance pr 15.7 2E+02 0.0068 22.6 4.8 46 194-242 43-88 (161)
9 2lhi_A Calmodulin, serine/thre 14.8 91 0.0031 24.4 2.5 51 192-242 96-146 (176)
10 1ggw_A Protein (CDC4P); light 14.4 2.1E+02 0.0072 20.2 4.3 48 194-241 90-137 (140)
No 1
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs 138}
Probab=100.00 E-value=8.7e-68 Score=484.75 Aligned_cols=174 Identities=28% Similarity=0.447 Sum_probs=165.8
Q ss_pred CCCCCCChhhhchhhhccCCHHHHHHHHHHHhcCC-CceeEeec-hHHHHHHHHHhhcCCceeeeccCC-----------
Q 025889 70 PLQPKPLDSIIDIERAKDKSAEDLATIWDDYHLGR-GHICASLK-TQLYRLLEHRSADCRYFVIPLWKG----------- 136 (246)
Q Consensus 70 ~p~~K~L~sIvklell~~~s~eeI~~IW~~yH~~k-~~i~AvIp-~~~Y~~m~~rAk~~P~FVlPlpR~----------- 136 (246)
.+++|+|+||||||||++++++||++||++||.++ ++|||||| +++|++|.+||++||+|||||||+
T Consensus 96 ~~p~K~L~sil~lekl~~~~~~eI~~IWr~~H~~k~~~l~AvIp~~~~Y~~m~~~Ak~~P~FVLPLPR~~~~~~~~~~~~ 175 (299)
T 2p4f_A 96 DKPYKTLDDYLKLDKIKDLSKQEVEFLWRAKWSNRDDSLVAVVPYVKTFQGMYKYAVKNPLFVLPLPRENAADGNKADKD 175 (299)
T ss_dssp CCSSCCHHHHSCHHHHTTSCHHHHHHHHHHHTTTCSSEEEEEEETTTTHHHHHHHHHHCCEEEEEEEC------------
T ss_pred CCCCCcHHHhhCHHHhccCCHHHHHHHHHHHHcCCCCeEEEecChHHHHHHHHHHHHhCCceEEeCCCCccccccccccc
Confidence 67899999999999999999999999999999998 58999999 999999999999999999999997
Q ss_pred -CCeeEEEEeeeC-----CeEEEeehHHHHhcCCCCCCeEEEEeehhhcccCCeEEEeeeeecCCCCCHHHHHHHHHHHH
Q 025889 137 -SGYATMFVQVQL-----PHILVTGLEDYKARGTQAAPYFTASFYTDFAESKDLVLIRGDIVFTSKLTDSEAEWLLETIQ 210 (246)
Q Consensus 137 -~Gye~~~~Q~q~-----~~vlfT~L~eYK~~ge~A~P~ltlthytELa~sKgIVLmrGdi~~~~~ls~~EAq~Lv~~lQ 210 (246)
+|||+||+||++ .||+||+|+|||+||++|+||+|||||+||+++||||||||+|+++++||++|||||++++|
T Consensus 176 ~~Gye~~flQw~f~~~~t~~vlfT~L~eYK~~ge~A~P~ltlthy~ELa~~KgiVLmrGev~~~~~ls~~eAq~Lv~~lQ 255 (299)
T 2p4f_A 176 SVPVELQYVQWQFAGPNTVHCLITSLAEYKLHQDFAKPHTTIQFHLDLANDKDMVLMNGQVESDSNVSLQDAQLLLLNVQ 255 (299)
T ss_dssp --CEEEEEEEEEEEETTEEEEEEEETTTTTTCHHHHSCSEEEEEECTTHHHHCEEEEEEEECTTSSCCHHHHHHHHHHHH
T ss_pred cCceeEEEEeeeccCCCCCEEEeeeHHHHhhccccCCceEEEEeehhhhhcCCeEEEeeeeccCCCCCHHHHHHHHHHHH
Confidence 799999999998 69999999999999999999999999999999999999999999767999999999999999
Q ss_pred Hhccc--------cchhhHHHHhhCCCCCCCHHHHHHHhCC
Q 025889 211 SFYLN--------DVRFKLVERFNKEARNFEFKDVLRALSM 243 (246)
Q Consensus 211 ~FY~~--------~~r~~LVe~FN~~p~eFd~~~li~el~~ 243 (246)
+||++ +++++||++||++|++|||++||++++.
T Consensus 256 ~FY~~~~~~~~~~~~r~~Lv~~Fn~~p~~F~~~~li~e~e~ 296 (299)
T 2p4f_A 256 RFYGAMGSETSIAKERIQLLEDFNKGSQNFDINKLIQLAQS 296 (299)
T ss_dssp HHTTGGGCCSHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHC
T ss_pred HHhCCccccccchHHHHHHHHHHhCCCCcCCHHHHHHHHHh
Confidence 99987 3589999999999999999999999864
No 2
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=26.70 E-value=97 Score=22.41 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHHhccccchhhHHHHhhC-CCCCCCHHHHHHHh
Q 025889 194 TSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNK-EARNFEFKDVLRAL 241 (246)
Q Consensus 194 ~~~ls~~EAq~Lv~~lQ~FY~~~~r~~LVe~FN~-~p~eFd~~~li~el 241 (246)
+..|+.+|-+.++..+-.-....+..++++.+-. +....+|+++++-|
T Consensus 50 ~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 50 NGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL 98 (100)
T ss_dssp SSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence 4568888877777665433344455567777754 45678888888754
No 3
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=22.51 E-value=70 Score=22.25 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHHhccccchhhHHHHhhC-CCCCCCHHHHHHHhC
Q 025889 194 TSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNK-EARNFEFKDVLRALS 242 (246)
Q Consensus 194 ~~~ls~~EAq~Lv~~lQ~FY~~~~r~~LVe~FN~-~p~eFd~~~li~el~ 242 (246)
+..|+..|-+.++..+-.-....+..++++.+.. +....+|++++..+.
T Consensus 38 ~G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~~ 87 (105)
T 1wlz_A 38 TNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87 (105)
T ss_dssp SSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHHC
T ss_pred CCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHHh
Confidence 3468898888777665322233344567777763 556799999988765
No 4
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=20.42 E-value=1.1e+02 Score=21.29 Aligned_cols=49 Identities=2% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHhccccchhhHHHHhhC-CCCCCCHHHHHHHhC
Q 025889 194 TSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNK-EARNFEFKDVLRALS 242 (246)
Q Consensus 194 ~~~ls~~EAq~Lv~~lQ~FY~~~~r~~LVe~FN~-~p~eFd~~~li~el~ 242 (246)
+..|+.+|-+.++..+..-....+..++++.+.. +....++++++..+.
T Consensus 43 ~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~~ 92 (94)
T 2kz2_A 43 NGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 92 (94)
T ss_dssp CSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 3468999988887765332233445567888854 456799999987653
No 5
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=20.26 E-value=1.6e+02 Score=18.10 Aligned_cols=49 Identities=2% Similarity=0.064 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHhccccchhhHHHHhhC-CCCCCCHHHHHHHhC
Q 025889 194 TSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNK-EARNFEFKDVLRALS 242 (246)
Q Consensus 194 ~~~ls~~EAq~Lv~~lQ~FY~~~~r~~LVe~FN~-~p~eFd~~~li~el~ 242 (246)
+..|+.+|-..++..+..-........+++.+.. +....+++++++.+.
T Consensus 14 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 4579999988888776433333445567777754 456789999988765
No 6
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=18.93 E-value=1.3e+02 Score=19.19 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHhc--cccchhhHHHHhhC-CCCCCCHHHHHHHh
Q 025889 195 SKLTDSEAEWLLETIQSFY--LNDVRFKLVERFNK-EARNFEFKDVLRAL 241 (246)
Q Consensus 195 ~~ls~~EAq~Lv~~lQ~FY--~~~~r~~LVe~FN~-~p~eFd~~~li~el 241 (246)
..|+..|-+.++..+..-. ......++++.+.. +....++++++..+
T Consensus 22 G~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~ 71 (76)
T 1qx2_A 22 NQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMM 71 (76)
T ss_dssp TSEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred CeECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 4688999888888775444 44456678888864 45678999988755
No 7
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=16.27 E-value=1.9e+02 Score=20.82 Aligned_cols=52 Identities=10% Similarity=0.069 Sum_probs=30.9
Q ss_pred CCCCChhhhchhhhccCCHHHHHHHHHHHhcCCCceeEeechHHHHHHHHHh
Q 025889 72 QPKPLDSIIDIERAKDKSAEDLATIWDDYHLGRGHICASLKTQLYRLLEHRS 123 (246)
Q Consensus 72 ~~K~L~sIvklell~~~s~eeI~~IW~~yH~~k~~i~AvIp~~~Y~~m~~rA 123 (246)
+.-+..+++....-.+++.+++++|...+..=+..=...|..+....+....
T Consensus 14 g~~~~~~~~~~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~l 65 (100)
T 2lv7_A 14 GIYTVPNLLSEQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSL 65 (100)
T ss_dssp SCCSCSSTTTTCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHH
T ss_pred ccccCchhhhhcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh
Confidence 3334455555566667778887777777655332224457777766666543
No 8
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=15.72 E-value=2e+02 Score=22.61 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHHHhccccchhhHHHHhhCCCCCCCHHHHHHHhC
Q 025889 194 TSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALS 242 (246)
Q Consensus 194 ~~~ls~~EAq~Lv~~lQ~FY~~~~r~~LVe~FN~~p~eFd~~~li~el~ 242 (246)
+..++.+|-+.+...++.+..++...+.+.. ....+++.++++++.
T Consensus 43 DG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~---~~~~~~l~~~~~~i~ 88 (161)
T 2ou3_A 43 DGVISPEEKDWALGFCASWGVADWVIEDLKT---YEADEALEEVIARSP 88 (161)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH---CCCCSCHHHHHTTCT
T ss_pred cCCCCHHHHHHHHHHHHHcCCCHHHHHHHhh---ccCCCCHHHHHHHHH
Confidence 4579999999999999998777665555555 445788888876643
No 9
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=14.85 E-value=91 Score=24.38 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=34.3
Q ss_pred ecCCCCCHHHHHHHHHHHHHhccccchhhHHHHhhCCCCCCCHHHHHHHhC
Q 025889 192 VFTSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRALS 242 (246)
Q Consensus 192 ~~~~~ls~~EAq~Lv~~lQ~FY~~~~r~~LVe~FN~~p~eFd~~~li~el~ 242 (246)
..+..|+.+|-+.++..+-.-....+.-++++.+..+....+|+++++-|.
T Consensus 96 d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~~~~dd~dG~I~~~EF~~~m~ 146 (176)
T 2lhi_A 96 NGDGLISAAELKHVLTSIGEKLTDAEVDDMLREVSDGSGEINIQQFAALLS 146 (176)
T ss_dssp SCSSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHHTTSSCBCTTHHHHHHT
T ss_pred CCCCcCcHHHHHHHHHHcCcccchHHHHHHHHhhcCCCCeEeHHHHHHHHH
Confidence 334568998877766543222233445567888877788999999998763
No 10
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=14.44 E-value=2.1e+02 Score=20.23 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHHHHhccccchhhHHHHhhCCCCCCCHHHHHHHh
Q 025889 194 TSKLTDSEAEWLLETIQSFYLNDVRFKLVERFNKEARNFEFKDVLRAL 241 (246)
Q Consensus 194 ~~~ls~~EAq~Lv~~lQ~FY~~~~r~~LVe~FN~~p~eFd~~~li~el 241 (246)
+..|+.+|-+.++..+-.-....+.-.+++.+..+....+++++++.+
T Consensus 90 ~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~dg~i~~~eF~~~~ 137 (140)
T 1ggw_A 90 TGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDFVQMI 137 (140)
T ss_dssp SSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTTCSSCCSTTTHHHHHH
T ss_pred CCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhccCCCCcEeHHHHHHHH
Confidence 446999998888766532122233446788887767789999998865
Done!