Query 025890
Match_columns 246
No_of_seqs 152 out of 1962
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 10:44:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01853 lipid_A_lpxD UDP-3-O 100.0 2.5E-37 5.4E-42 262.3 25.8 221 22-242 98-319 (324)
2 COG1044 LpxD UDP-3-O-[3-hydrox 100.0 3.5E-37 7.6E-42 254.1 22.1 222 20-242 104-326 (338)
3 PRK00892 lpxD UDP-3-O-[3-hydro 100.0 1.6E-35 3.4E-40 254.5 25.8 218 23-241 108-327 (343)
4 PRK12461 UDP-N-acetylglucosami 100.0 2.1E-32 4.5E-37 224.7 22.5 182 37-226 3-187 (255)
5 cd03352 LbH_LpxD UDP-3-O-acyl- 100.0 3.2E-31 7E-36 212.6 25.5 202 28-230 2-204 (205)
6 COG1043 LpxA Acyl-[acyl carrie 100.0 1.2E-32 2.7E-37 215.5 15.0 185 34-226 4-192 (260)
7 PRK05289 UDP-N-acetylglucosami 100.0 2.1E-31 4.6E-36 220.5 21.2 184 36-227 5-192 (262)
8 cd03351 LbH_UDP-GlcNAc_AT UDP- 100.0 5.3E-29 1.1E-33 205.7 22.2 180 39-226 5-188 (254)
9 TIGR01852 lipid_A_lpxA acyl-[a 100.0 9.3E-29 2E-33 204.3 22.6 177 42-226 7-187 (254)
10 cd03353 LbH_GlmU_C N-acetyl-gl 100.0 8.8E-27 1.9E-31 185.1 22.4 175 23-224 11-192 (193)
11 TIGR01173 glmU UDP-N-acetylglu 100.0 7.7E-27 1.7E-31 208.1 19.2 184 24-234 258-449 (451)
12 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 4.6E-26 1E-30 188.2 21.9 197 20-235 4-214 (254)
13 PRK09451 glmU bifunctional N-a 99.9 2.6E-26 5.6E-31 205.0 18.5 203 5-234 229-453 (456)
14 COG1207 GlmU N-acetylglucosami 99.9 4.6E-26 1E-30 192.4 14.1 198 10-233 243-455 (460)
15 PRK14355 glmU bifunctional N-a 99.9 2.6E-25 5.6E-30 198.7 19.5 201 5-232 226-454 (459)
16 PRK14352 glmU bifunctional N-a 99.9 4E-25 8.6E-30 198.5 20.6 183 27-236 265-460 (482)
17 PRK14360 glmU bifunctional N-a 99.9 1.1E-24 2.4E-29 194.2 17.7 177 24-227 252-441 (450)
18 COG1043 LpxA Acyl-[acyl carrie 99.9 1.8E-24 4E-29 169.7 15.5 200 23-241 5-224 (260)
19 TIGR01852 lipid_A_lpxA acyl-[a 99.9 1.4E-23 3E-28 173.4 19.9 200 21-239 4-217 (254)
20 PRK14356 glmU bifunctional N-a 99.9 1.6E-23 3.4E-28 187.2 20.3 177 24-227 266-449 (456)
21 COG1044 LpxD UDP-3-O-[3-hydrox 99.9 7.5E-24 1.6E-28 175.3 16.6 181 20-220 98-288 (338)
22 PRK14357 glmU bifunctional N-a 99.9 8.8E-24 1.9E-28 188.4 18.5 179 23-228 244-435 (448)
23 PRK14353 glmU bifunctional N-a 99.9 1.7E-23 3.7E-28 186.4 20.1 158 44-227 267-431 (446)
24 PRK14354 glmU bifunctional N-a 99.9 3.5E-23 7.7E-28 185.0 21.4 183 28-237 260-455 (458)
25 PRK14358 glmU bifunctional N-a 99.9 3.5E-23 7.6E-28 185.6 20.5 169 25-220 268-443 (481)
26 PRK05289 UDP-N-acetylglucosami 99.9 5.8E-23 1.3E-27 170.1 18.1 200 20-239 7-221 (262)
27 PRK14359 glmU bifunctional N-a 99.9 2E-23 4.4E-28 185.1 16.5 199 4-232 216-424 (430)
28 PRK12461 UDP-N-acetylglucosami 99.9 1.1E-22 2.5E-27 167.1 18.4 200 21-240 5-218 (255)
29 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 3.1E-22 6.6E-27 170.2 20.9 81 117-203 216-296 (324)
30 PRK00892 lpxD UDP-3-O-[3-hydro 99.9 5.3E-22 1.2E-26 170.7 17.4 159 19-197 116-300 (343)
31 cd03352 LbH_LpxD UDP-3-O-acyl- 99.9 4.6E-20 1E-24 147.9 21.7 171 18-204 4-194 (205)
32 COG0663 PaaY Carbonic anhydras 99.8 1.5E-20 3.3E-25 142.7 11.9 75 158-233 72-148 (176)
33 cd05636 LbH_G1P_TT_C_like Puta 99.8 1.2E-19 2.7E-24 140.2 17.3 155 19-210 9-163 (163)
34 TIGR03308 phn_thr-fam phosphon 99.8 1.6E-19 3.5E-24 143.9 17.5 57 174-230 106-162 (204)
35 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 3.9E-20 8.4E-25 150.0 12.8 140 68-241 85-225 (231)
36 PRK13627 carnitine operon prot 99.8 2.5E-19 5.4E-24 141.7 14.3 59 176-234 88-148 (196)
37 cd03350 LbH_THP_succinylT 2,3, 99.8 6.9E-19 1.5E-23 132.4 15.6 65 157-224 74-139 (139)
38 cd03353 LbH_GlmU_C N-acetyl-gl 99.8 1.6E-18 3.5E-23 137.6 18.3 151 41-218 11-170 (193)
39 TIGR01173 glmU UDP-N-acetylglu 99.8 2.7E-19 5.9E-24 159.7 14.5 147 39-212 255-408 (451)
40 PRK14353 glmU bifunctional N-a 99.8 2.7E-18 5.9E-23 153.1 19.4 151 24-203 265-423 (446)
41 PLN02296 carbonate dehydratase 99.8 9.3E-19 2E-23 144.4 13.8 56 177-232 137-194 (269)
42 PRK09527 lacA galactoside O-ac 99.8 1.5E-18 3.3E-23 137.5 13.4 58 174-231 129-186 (203)
43 cd04745 LbH_paaY_like paaY-lik 99.8 3.4E-18 7.3E-23 131.1 13.6 56 177-232 79-136 (155)
44 COG1207 GlmU N-acetylglucosami 99.8 1E-18 2.2E-23 148.2 11.2 176 40-242 263-454 (460)
45 cd04646 LbH_Dynactin_6 Dynacti 99.8 1.2E-17 2.7E-22 128.9 16.1 73 141-214 67-139 (164)
46 PRK14358 glmU bifunctional N-a 99.8 1.6E-17 3.5E-22 149.1 17.7 167 22-218 277-456 (481)
47 PRK10502 putative acyl transfe 99.8 7.2E-18 1.6E-22 132.4 12.5 58 173-230 121-178 (182)
48 PLN02472 uncharacterized prote 99.8 1.4E-17 3E-22 135.8 14.4 102 118-232 98-201 (246)
49 PRK14355 glmU bifunctional N-a 99.8 4.2E-17 9.2E-22 145.9 18.7 158 34-218 256-423 (459)
50 PRK14352 glmU bifunctional N-a 99.8 4.4E-17 9.6E-22 146.6 18.8 164 22-202 266-441 (482)
51 COG0663 PaaY Carbonic anhydras 99.8 2.2E-17 4.8E-22 125.5 13.8 75 140-215 72-147 (176)
52 cd04646 LbH_Dynactin_6 Dynacti 99.8 1.7E-17 3.6E-22 128.2 13.3 129 66-224 2-133 (164)
53 cd00710 LbH_gamma_CA Gamma car 99.8 1.6E-16 3.5E-21 123.2 18.1 76 141-218 65-140 (167)
54 TIGR02287 PaaY phenylacetic ac 99.8 2.2E-17 4.8E-22 130.1 13.1 130 66-231 11-143 (192)
55 PRK09451 glmU bifunctional N-a 99.7 7.6E-17 1.6E-21 144.1 17.6 154 21-203 271-437 (456)
56 PRK14357 glmU bifunctional N-a 99.7 6.1E-17 1.3E-21 144.5 16.0 167 22-205 250-428 (448)
57 TIGR00965 dapD 2,3,4,5-tetrahy 99.7 5.9E-17 1.3E-21 132.0 14.0 66 157-225 172-239 (269)
58 PRK14359 glmU bifunctional N-a 99.7 1.1E-16 2.5E-21 142.0 17.0 146 22-203 254-410 (430)
59 PRK14356 glmU bifunctional N-a 99.7 1.7E-16 3.8E-21 141.8 17.5 182 4-212 226-416 (456)
60 PRK14354 glmU bifunctional N-a 99.7 2E-16 4.4E-21 141.5 17.7 151 40-218 260-419 (458)
61 TIGR03570 NeuD_NnaD sugar O-ac 99.7 1.6E-16 3.6E-21 126.5 14.9 103 118-224 99-201 (201)
62 PRK14360 glmU bifunctional N-a 99.7 2.3E-16 4.9E-21 140.9 17.4 112 64-203 314-433 (450)
63 cd03358 LbH_WxcM_N_like WcxM-l 99.7 6.8E-17 1.5E-21 118.3 11.5 103 118-227 16-118 (119)
64 PRK09677 putative lipopolysacc 99.7 6.2E-17 1.3E-21 128.2 11.8 135 79-232 42-186 (192)
65 PRK10092 maltose O-acetyltrans 99.7 8.2E-17 1.8E-21 126.1 11.9 58 172-229 125-182 (183)
66 cd03357 LbH_MAT_GAT Maltose O- 99.7 9.8E-17 2.1E-21 124.6 12.1 56 172-227 114-169 (169)
67 PRK11830 dapD 2,3,4,5-tetrahyd 99.7 1.5E-16 3.3E-21 130.7 13.6 72 158-232 176-259 (272)
68 cd04645 LbH_gamma_CA_like Gamm 99.7 9.3E-16 2E-20 117.3 16.7 53 178-230 79-133 (153)
69 cd03360 LbH_AT_putative Putati 99.7 4E-16 8.7E-21 123.4 14.8 102 118-223 96-197 (197)
70 cd03359 LbH_Dynactin_5 Dynacti 99.7 3.6E-16 7.9E-21 120.5 13.8 64 178-241 91-156 (161)
71 cd04650 LbH_FBP Ferripyochelin 99.7 4.6E-16 9.9E-21 119.0 13.9 131 66-232 3-136 (154)
72 cd04745 LbH_paaY_like paaY-lik 99.7 1.4E-15 3E-20 116.6 16.6 58 158-215 78-136 (155)
73 TIGR02353 NRPS_term_dom non-ri 99.7 9.5E-16 2.1E-20 142.4 17.8 86 139-224 596-695 (695)
74 TIGR00965 dapD 2,3,4,5-tetrahy 99.7 1.2E-15 2.7E-20 124.3 15.9 96 139-240 172-267 (269)
75 cd04650 LbH_FBP Ferripyochelin 99.7 3E-15 6.4E-20 114.5 16.7 96 81-215 40-136 (154)
76 cd05825 LbH_wcaF_like wcaF-lik 99.7 5.8E-16 1.3E-20 111.2 12.0 55 172-226 52-106 (107)
77 cd05636 LbH_G1P_TT_C_like Puta 99.7 3.7E-15 8E-20 115.2 16.8 145 37-210 9-157 (163)
78 cd03350 LbH_THP_succinylT 2,3, 99.7 3.8E-15 8.3E-20 112.0 16.0 126 23-196 3-128 (139)
79 cd00710 LbH_gamma_CA Gamma car 99.7 2.9E-15 6.2E-20 116.2 14.8 140 66-240 5-153 (167)
80 COG0110 WbbJ Acetyltransferase 99.7 4.3E-16 9.3E-21 123.3 10.0 60 173-232 121-180 (190)
81 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 3.4E-15 7.4E-20 121.1 15.1 47 157-205 159-205 (231)
82 cd04645 LbH_gamma_CA_like Gamm 99.7 3.3E-15 7.1E-20 114.3 14.2 132 66-215 2-135 (153)
83 TIGR02287 PaaY phenylacetic ac 99.7 4.4E-15 9.5E-20 117.1 14.6 134 36-216 11-145 (192)
84 PRK11132 cysE serine acetyltra 99.7 9.6E-16 2.1E-20 126.1 10.7 107 118-230 141-247 (273)
85 PRK13627 carnitine operon prot 99.6 9.7E-15 2.1E-19 115.5 13.8 59 157-215 87-146 (196)
86 PLN02739 serine acetyltransfer 99.6 1.5E-15 3.3E-20 127.3 9.5 107 118-230 205-311 (355)
87 PLN02472 uncharacterized prote 99.6 2.7E-14 5.9E-19 116.5 16.6 102 81-215 99-201 (246)
88 PLN02694 serine O-acetyltransf 99.6 3.8E-15 8.3E-20 122.6 11.2 107 118-230 160-266 (294)
89 cd03359 LbH_Dynactin_5 Dynacti 99.6 3.5E-14 7.5E-19 109.4 15.8 57 159-215 90-147 (161)
90 PRK11830 dapD 2,3,4,5-tetrahyd 99.6 1.7E-14 3.6E-19 118.7 14.4 67 140-211 176-242 (272)
91 TIGR01172 cysE serine O-acetyl 99.6 1.1E-14 2.3E-19 112.3 12.2 81 141-225 82-162 (162)
92 KOG4750 Serine O-acetyltransfe 99.6 1.2E-15 2.6E-20 118.8 6.8 90 140-233 168-257 (269)
93 PRK10191 putative acyl transfe 99.6 8.7E-15 1.9E-19 110.1 10.8 103 118-227 41-143 (146)
94 COG1045 CysE Serine acetyltran 99.6 5.5E-15 1.2E-19 113.7 9.7 105 118-228 67-171 (194)
95 TIGR02353 NRPS_term_dom non-ri 99.6 3.5E-14 7.5E-19 132.1 16.0 59 171-229 396-456 (695)
96 cd03349 LbH_XAT Xenobiotic acy 99.6 2.4E-14 5.2E-19 108.1 12.2 58 174-231 71-128 (145)
97 cd04649 LbH_THP_succinylT_puta 99.6 6.7E-14 1.5E-18 103.8 12.1 87 119-213 14-108 (147)
98 PLN02357 serine acetyltransfer 99.5 4.2E-14 9.1E-19 119.6 10.9 107 118-230 226-332 (360)
99 TIGR03308 phn_thr-fam phosphon 99.5 2.5E-13 5.4E-18 108.4 14.8 150 30-206 5-154 (204)
100 cd03354 LbH_SAT Serine acetylt 99.5 2.9E-13 6.4E-18 96.1 11.8 99 119-223 3-101 (101)
101 cd04647 LbH_MAT_like Maltose O 99.5 3.3E-13 7.1E-18 97.0 11.3 56 172-227 54-109 (109)
102 cd03360 LbH_AT_putative Putati 99.4 3.4E-12 7.3E-17 100.8 14.5 52 151-204 143-194 (197)
103 PLN02296 carbonate dehydratase 99.4 6.5E-12 1.4E-16 103.9 16.5 76 141-217 120-196 (269)
104 KOG1461 Translation initiation 99.4 2.3E-13 4.9E-18 120.4 8.1 109 27-161 315-423 (673)
105 TIGR03570 NeuD_NnaD sugar O-ac 99.4 3.7E-12 8.1E-17 101.3 14.4 56 147-204 142-197 (201)
106 COG2171 DapD Tetrahydrodipicol 99.4 6.8E-13 1.5E-17 106.8 9.2 37 177-214 201-240 (271)
107 PRK05293 glgC glucose-1-phosph 99.4 1.6E-12 3.6E-17 113.6 12.4 127 4-152 240-376 (380)
108 COG1208 GCD1 Nucleoside-diphos 99.4 1.6E-12 3.5E-17 112.4 11.7 104 4-129 217-324 (358)
109 cd03358 LbH_WxcM_N_like WcxM-l 99.4 3.9E-12 8.4E-17 92.9 12.0 19 175-193 84-102 (119)
110 cd04649 LbH_THP_succinylT_puta 99.4 9.6E-12 2.1E-16 92.4 13.7 38 159-198 74-111 (147)
111 TIGR03536 DapD_gpp 2,3,4,5-tet 99.4 5.1E-12 1.1E-16 104.4 12.5 86 118-211 190-283 (341)
112 TIGR03536 DapD_gpp 2,3,4,5-tet 99.4 8.3E-12 1.8E-16 103.1 13.5 39 159-199 251-289 (341)
113 PLN02241 glucose-1-phosphate a 99.4 3.1E-12 6.7E-17 113.8 11.5 169 4-208 263-435 (436)
114 KOG1461 Translation initiation 99.4 2.6E-12 5.6E-17 113.8 9.5 93 44-162 314-406 (673)
115 TIGR03535 DapD_actino 2,3,4,5- 99.3 1.3E-11 2.9E-16 101.4 11.7 86 118-212 165-259 (319)
116 PRK09677 putative lipopolysacc 99.3 5.7E-11 1.2E-15 94.1 14.2 58 157-216 129-187 (192)
117 cd05635 LbH_unknown Uncharacte 99.3 4.9E-11 1.1E-15 84.5 11.4 85 27-134 11-95 (101)
118 PRK10092 maltose O-acetyltrans 99.3 6.6E-11 1.4E-15 92.8 12.5 51 154-206 125-175 (183)
119 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 5.8E-11 1.3E-15 80.7 10.1 64 31-96 3-66 (81)
120 PRK09527 lacA galactoside O-ac 99.3 6.2E-11 1.3E-15 94.2 11.7 56 156-213 129-185 (203)
121 cd03357 LbH_MAT_GAT Maltose O- 99.3 8.6E-11 1.9E-15 91.3 11.9 51 154-206 114-164 (169)
122 PRK10502 putative acyl transfe 99.3 1.1E-10 2.4E-15 91.6 12.4 49 156-206 122-170 (182)
123 TIGR03535 DapD_actino 2,3,4,5- 99.3 1.6E-10 3.5E-15 95.1 13.1 38 159-198 226-263 (319)
124 TIGR01208 rmlA_long glucose-1- 99.2 6.2E-11 1.4E-15 102.7 11.3 16 4-19 217-232 (353)
125 cd05824 LbH_M1P_guanylylT_C Ma 99.2 1.1E-10 2.3E-15 79.2 10.0 64 32-96 4-67 (80)
126 cd05824 LbH_M1P_guanylylT_C Ma 99.2 1.2E-10 2.6E-15 79.0 10.2 66 49-135 3-68 (80)
127 KOG3121 Dynactin, subunit p25 99.2 1.6E-11 3.5E-16 89.2 5.6 96 79-205 53-148 (184)
128 cd03356 LbH_G1P_AT_C_like Left 99.2 1.3E-10 2.7E-15 78.6 9.6 32 64-95 17-48 (79)
129 cd05787 LbH_eIF2B_epsilon eIF- 99.2 1.3E-10 2.8E-15 78.4 9.7 64 31-96 3-66 (79)
130 cd03356 LbH_G1P_AT_C_like Left 99.2 2E-10 4.2E-15 77.7 10.0 65 30-96 2-66 (79)
131 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 2.1E-10 4.5E-15 78.0 9.7 65 48-134 2-66 (81)
132 cd05787 LbH_eIF2B_epsilon eIF- 99.2 1.9E-10 4.2E-15 77.6 9.4 48 48-96 2-49 (79)
133 COG0448 GlgC ADP-glucose pyrop 99.2 1.1E-10 2.4E-15 99.4 8.2 112 4-136 243-363 (393)
134 cd04651 LbH_G1P_AT_C Glucose-1 99.1 8.4E-10 1.8E-14 78.7 10.0 79 34-136 2-80 (104)
135 cd00208 LbetaH Left-handed par 99.1 6E-10 1.3E-14 74.7 8.7 36 175-210 43-78 (78)
136 cd05825 LbH_wcaF_like wcaF-lik 99.1 1.3E-09 2.7E-14 78.2 10.7 48 155-204 53-100 (107)
137 KOG1322 GDP-mannose pyrophosph 99.1 1E-10 2.2E-15 96.7 5.4 120 4-151 226-345 (371)
138 PRK02862 glgC glucose-1-phosph 99.1 4.9E-10 1.1E-14 99.5 9.8 16 4-19 255-270 (429)
139 PRK10191 putative acyl transfe 99.1 6.8E-10 1.5E-14 83.6 9.1 86 23-136 43-128 (146)
140 KOG4042 Dynactin subunit p27/W 99.1 6.2E-10 1.3E-14 81.7 8.0 55 34-96 9-63 (190)
141 PRK00844 glgC glucose-1-phosph 99.1 1.6E-09 3.4E-14 95.7 11.8 109 4-135 258-382 (407)
142 cd03354 LbH_SAT Serine acetylt 99.1 1.9E-09 4.1E-14 76.4 10.0 62 53-134 24-88 (101)
143 TIGR01172 cysE serine O-acetyl 99.0 4E-09 8.6E-14 81.3 11.9 47 157-205 112-158 (162)
144 TIGR02092 glgD glucose-1-phosp 99.0 2E-09 4.3E-14 93.9 11.4 15 4-18 235-249 (369)
145 cd00208 LbetaH Left-handed par 99.0 1.8E-09 3.9E-14 72.3 8.8 34 80-133 44-77 (78)
146 cd04651 LbH_G1P_AT_C Glucose-1 99.0 4.3E-09 9.2E-14 75.0 10.3 76 52-155 2-77 (104)
147 cd05635 LbH_unknown Uncharacte 99.0 4.2E-09 9E-14 74.6 10.1 81 16-96 12-95 (101)
148 PLN02739 serine acetyltransfer 99.0 5.5E-09 1.2E-13 88.2 12.4 106 80-213 205-311 (355)
149 PRK11132 cysE serine acetyltra 99.0 2.3E-09 5E-14 88.5 9.6 99 79-205 140-238 (273)
150 PLN02694 serine O-acetyltransf 99.0 3.7E-09 7.9E-14 87.5 10.1 17 118-134 212-228 (294)
151 cd04647 LbH_MAT_like Maltose O 99.0 8.5E-09 1.8E-13 73.9 10.8 47 156-204 56-102 (109)
152 TIGR02091 glgC glucose-1-phosp 99.0 3.1E-09 6.8E-14 92.3 10.1 14 4-17 240-253 (361)
153 PLN02241 glucose-1-phosphate a 99.0 6.4E-09 1.4E-13 92.6 11.5 48 32-83 304-351 (436)
154 COG2171 DapD Tetrahydrodipicol 99.0 1E-08 2.3E-13 82.8 11.4 39 177-215 183-221 (271)
155 PRK00725 glgC glucose-1-phosph 99.0 6.1E-09 1.3E-13 92.4 11.0 16 4-19 269-284 (425)
156 TIGR01208 rmlA_long glucose-1- 99.0 9.1E-09 2E-13 89.2 11.8 14 82-95 284-297 (353)
157 KOG1460 GDP-mannose pyrophosph 98.9 5.9E-09 1.3E-13 85.3 9.0 68 48-136 291-358 (407)
158 PRK05293 glgC glucose-1-phosph 98.9 1.1E-08 2.4E-13 89.5 11.5 16 118-133 308-323 (380)
159 KOG4042 Dynactin subunit p27/W 98.9 2.7E-09 5.9E-14 78.3 5.6 136 81-243 27-177 (190)
160 cd03349 LbH_XAT Xenobiotic acy 98.9 4.4E-08 9.5E-13 74.0 12.1 49 156-206 71-119 (145)
161 PLN02357 serine acetyltransfer 98.9 2.1E-08 4.5E-13 85.3 10.8 85 29-136 228-314 (360)
162 COG1208 GCD1 Nucleoside-diphos 98.9 3E-08 6.5E-13 85.9 11.6 29 63-91 296-324 (358)
163 KOG1462 Translation initiation 98.8 9.1E-09 2E-13 86.9 7.2 73 40-134 329-401 (433)
164 PRK02862 glgC glucose-1-phosph 98.8 3.1E-08 6.6E-13 88.1 10.4 37 46-84 309-345 (429)
165 COG4801 Predicted acyltransfer 98.8 2.4E-08 5.3E-13 78.7 8.1 103 118-242 33-135 (277)
166 COG1045 CysE Serine acetyltran 98.8 1.1E-07 2.4E-12 73.6 10.7 52 157-209 118-169 (194)
167 KOG3121 Dynactin, subunit p25 98.8 2.1E-08 4.6E-13 73.1 6.2 64 51-135 54-118 (184)
168 KOG1462 Translation initiation 98.7 6.4E-08 1.4E-12 81.9 8.1 84 58-168 329-412 (433)
169 PRK00844 glgC glucose-1-phosph 98.7 1.3E-07 2.8E-12 83.6 10.3 69 26-97 314-382 (407)
170 KOG1460 GDP-mannose pyrophosph 98.7 1.1E-07 2.4E-12 77.9 8.6 71 27-98 288-358 (407)
171 COG0110 WbbJ Acetyltransferase 98.6 2.7E-07 5.8E-12 72.9 9.8 87 118-210 87-175 (190)
172 PRK00725 glgC glucose-1-phosph 98.5 6.5E-07 1.4E-11 79.6 10.7 70 45-137 327-396 (425)
173 KOG1322 GDP-mannose pyrophosph 98.5 2E-07 4.4E-12 77.4 5.5 96 19-135 256-351 (371)
174 TIGR02092 glgD glucose-1-phosp 98.5 1E-06 2.2E-11 76.8 9.9 18 78-95 302-319 (369)
175 TIGR02091 glgC glucose-1-phosp 98.5 1.6E-06 3.4E-11 75.5 10.6 18 78-95 308-325 (361)
176 PF14602 Hexapep_2: Hexapeptid 98.4 6.3E-07 1.4E-11 49.9 4.3 34 176-211 1-34 (34)
177 KOG4750 Serine O-acetyltransfe 98.4 1.4E-06 3.1E-11 68.6 7.3 71 118-196 168-238 (269)
178 COG4801 Predicted acyltransfer 98.2 5.3E-05 1.2E-09 60.1 13.1 71 37-108 43-116 (277)
179 COG0448 GlgC ADP-glucose pyrop 98.2 8.9E-06 1.9E-10 69.8 9.4 55 39-96 273-327 (393)
180 PF00132 Hexapep: Bacterial tr 98.1 3.5E-06 7.5E-11 47.6 3.2 34 177-210 2-35 (36)
181 PF00132 Hexapep: Bacterial tr 97.9 2E-05 4.3E-10 44.5 3.4 33 159-191 2-34 (36)
182 PF14602 Hexapep_2: Hexapeptid 97.7 7.1E-05 1.5E-09 41.6 3.5 16 177-192 18-33 (34)
183 PF07959 Fucokinase: L-fucokin 89.9 0.97 2.1E-05 40.2 6.4 44 71-135 275-318 (414)
184 PF07959 Fucokinase: L-fucokin 86.3 1.1 2.4E-05 39.9 4.4 33 64-96 285-317 (414)
185 PF04519 Bactofilin: Polymer-f 60.2 25 0.00054 24.3 4.8 21 175-195 62-82 (101)
186 PF13720 Acetyltransf_11: Udp 49.3 8.1 0.00018 26.0 0.8 15 212-226 1-15 (83)
187 PRK13412 fkp bifunctional fuco 49.3 36 0.00077 33.9 5.3 36 46-81 337-372 (974)
188 COG1664 CcmA Integral membrane 43.7 1.4E+02 0.003 22.5 7.2 8 36-43 26-33 (146)
189 PRK13412 fkp bifunctional fuco 42.5 48 0.001 33.0 5.1 35 27-61 336-370 (974)
190 KOG2638 UDP-glucose pyrophosph 33.2 57 0.0012 29.1 3.6 9 33-41 453-461 (498)
191 COG1209 RfbA dTDP-glucose pyro 30.9 7 0.00015 32.6 -2.1 16 4-19 218-233 (286)
192 COG1664 CcmA Integral membrane 26.3 2.8E+02 0.0061 20.8 7.5 10 52-61 24-33 (146)
No 1
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=100.00 E-value=2.5e-37 Score=262.32 Aligned_cols=221 Identities=44% Similarity=0.732 Sum_probs=191.7
Q ss_pred ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCc
Q 025890 22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGF 100 (246)
Q Consensus 22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~ 100 (246)
+.+++++.|++++.|++++.|++++.|+++++|+++|+|++++.||++|.|++++.| .++.||++|.|+++++|+.++|
T Consensus 98 a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gf 177 (324)
T TIGR01853 98 AVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGF 177 (324)
T ss_pred CEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCc
Confidence 344555555555555555555555666666666666666667777777777777777 4899999999999999999999
Q ss_pred eeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEEC
Q 025890 101 GFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIG 180 (246)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig 180 (246)
++.....+.+...++.+.+.||+++.|+++++|.++.+.++.||+++.++..+.+++++.||+++.+..++.+.++++||
T Consensus 178 g~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG 257 (324)
T TIGR01853 178 GYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIG 257 (324)
T ss_pred cceeccCCcceecCccceEEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEEC
Confidence 88776666777778888999999999999999999888999999999999999999999999999999999999999999
Q ss_pred CCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhhccc
Q 025890 181 DYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSK 242 (246)
Q Consensus 181 ~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 242 (246)
++|++|+++.|.+++.||++++|+++|.|++|+|++.++.|+||+.++.|.+.+..++||.+
T Consensus 258 ~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~~~G~pa~~~~~~~~~~~~~~~l~~ 319 (324)
T TIGR01853 258 RNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPPPGVYGGIPARPNKEWLRIAAKVKRLPE 319 (324)
T ss_pred CCeEEccccccccCCEECCCCEEccCCEeCCcCCCCcEEEccCccHHHHHHHHHHHHhccHh
Confidence 99999999999999999999999999999999999999999999999999999988888874
No 2
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=100.00 E-value=3.5e-37 Score=254.08 Aligned_cols=222 Identities=47% Similarity=0.782 Sum_probs=202.9
Q ss_pred CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCC
Q 025890 20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 98 (246)
Q Consensus 20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~ 98 (246)
..+.+++++.+.+++.|+++++|++++.||+++.|+++|+|++++.||++++|.+++.| .++.||++|.|+++++|+.+
T Consensus 104 ~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~d 183 (338)
T COG1044 104 PTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGAD 183 (338)
T ss_pred ccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccC
Confidence 44456666777777777888888888888888888888888888888888888888888 56999999999999999999
Q ss_pred CceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceE
Q 025890 99 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT 178 (246)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~ 178 (246)
.|++..-..+ |.+-++.+..+||+++.||.+++|.++.+.++.|++++.++..+.|+++|+||.+|.|..++.+.+.++
T Consensus 184 gFg~a~~~~g-~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~ 262 (338)
T COG1044 184 GFGYAGTAIG-WVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVK 262 (338)
T ss_pred ccccccccCC-ceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccce
Confidence 9999877777 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhhccc
Q 025890 179 IGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSK 242 (246)
Q Consensus 179 Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 242 (246)
||++|.||+.+-+..+..|+|++.|++.+.+.+++|++..+.|.|+.+.++|.|....+.++.+
T Consensus 263 IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~~~gg~P~~p~k~w~k~~a~~~~l~~ 326 (338)
T COG1044 263 IGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPGYSGGIPAQPIKEWLKTAALIRRLPE 326 (338)
T ss_pred ECCeEEECcceeecCceEEcCCCEEecccccccccCCCceeccCCCchHHHHHHHHHHHhhCHH
Confidence 9999999999999999999999999999999999999998888999999999887777766654
No 3
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=100.00 E-value=1.6e-35 Score=254.47 Aligned_cols=218 Identities=45% Similarity=0.708 Sum_probs=184.1
Q ss_pred eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCce
Q 025890 23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFG 101 (246)
Q Consensus 23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~ 101 (246)
.+++++++++++.|++++.|++++.|++++.|+++|+|++++.||++|.|++++.| ..+.|+++|.|++++.|+.++|+
T Consensus 108 ~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~ 187 (343)
T PRK00892 108 VIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFG 187 (343)
T ss_pred EECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcC
Confidence 34444444455555555555555555556666666666666666666777777777 45779999999999999999998
Q ss_pred eEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECC
Q 025890 102 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGD 181 (246)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~ 181 (246)
+. ...+.+..-++.+.+.||+++.|+++++|.++.+.++.||+++.++.++.|+++++||+++.+++++.+.++++||+
T Consensus 188 ~~-~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~ 266 (343)
T PRK00892 188 FA-NDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGR 266 (343)
T ss_pred cc-cCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECC
Confidence 87 55666777788889999999999999999988888999999999999999999999999999999999999999999
Q ss_pred CeEECcCcEECCCcEECCCCEEccCcEEeccCCC-CCeEEccCchhhHHHHHHhhhhhhcc
Q 025890 182 YVTLGGRVAVRDHVSIASKVRLAANSCVFKDITE-PGDYGGFPAVPIHEWRRQVANQIRSS 241 (246)
Q Consensus 182 ~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~-~~~~~g~p~~~~~~~~~~~~~~~~~~ 241 (246)
+|+|+.++.|.++++||++++|+++|.+++|+|+ +.++.|+||+.+++|.+.+..+++|.
T Consensus 267 ~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~~~~~~~G~pa~~~~~~~~~~~~~~~l~ 327 (343)
T PRK00892 267 YCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEPGEYSSGIPAQPNKEWLRTAARLRRLD 327 (343)
T ss_pred ceEECCCCEEcCCCEECCCCEEecCCeeCCccCCCCeEEEeecCchHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999 67889999999999998888777775
No 4
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00 E-value=2.1e-32 Score=224.72 Aligned_cols=182 Identities=27% Similarity=0.396 Sum_probs=146.8
Q ss_pred cCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCc
Q 025890 37 EVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ 115 (246)
Q Consensus 37 ~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~ 115 (246)
.+.|.|++++.|++++.|+++|+|++++.||+++.|++++.| .++.||++|.|++++.|+..+...... ..
T Consensus 3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~--------g~ 74 (255)
T PRK12461 3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYK--------GE 74 (255)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCcccccc--------Cc
Confidence 344444444455555555555555555556666666666666 467778888899999998755432211 12
Q ss_pred ccceEECCCcEECcccEEcCCCc--cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC
Q 025890 116 LLNARIGNHVEIGANSCIDRGSW--RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD 193 (246)
Q Consensus 116 ~~~~~Ig~~~~ig~~~~i~~~~~--~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~ 193 (246)
...+.||+++.|+++++|..+.. ..+.||+++.+..+++++++|+||++++++.++.+.++++|||+++|++++.|.+
T Consensus 75 ~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~ 154 (255)
T PRK12461 75 ESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQ 154 (255)
T ss_pred cceeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECC
Confidence 23689999999999999987654 4689999999999999999999999999999999999999999999999999999
Q ss_pred CcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890 194 HVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 226 (246)
Q Consensus 194 ~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~ 226 (246)
+++||++++|+++|+|++|+||++++.|+||+.
T Consensus 155 ~~~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~ 187 (255)
T PRK12461 155 FCRIGALAMMAGGSRISKDVPPYCMMAGHPTNV 187 (255)
T ss_pred CCEECCCcEECCCceEeccCCCCeEEecCcceE
Confidence 999999999999999999999999999999984
No 5
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=100.00 E-value=3.2e-31 Score=212.58 Aligned_cols=202 Identities=50% Similarity=0.785 Sum_probs=171.1
Q ss_pred cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcC
Q 025890 28 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDE 106 (246)
Q Consensus 28 ~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~ 106 (246)
+.+++++.|.+.+.|++++.|++++.|+++|+|.+++.|++++.|++++.| .++.|+++|.|++++.|+.++|.+....
T Consensus 2 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~ 81 (205)
T cd03352 2 AKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDG 81 (205)
T ss_pred cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecC
Confidence 345566666666666666667777777777777777777777777777777 4488999999999999988777654433
Q ss_pred CCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEEC
Q 025890 107 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLG 186 (246)
Q Consensus 107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig 186 (246)
+.+...+....+.|++++.+++++.+.......+.|++++.++.++.+++++.+++++.++.++.+.++++|+++|+|+
T Consensus 82 -~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig 160 (205)
T cd03352 82 -GGWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIG 160 (205)
T ss_pred -CcEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEc
Confidence 4444555566899999999999999987666789999999999999999999999999999999999999999999999
Q ss_pred cCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890 187 GRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 230 (246)
Q Consensus 187 ~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~ 230 (246)
+++++.++++|+++++|+++|.|++++|++.++.|+||+.++.+
T Consensus 161 ~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~~~G~pa~~~~~~ 204 (205)
T cd03352 161 GQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQPHREW 204 (205)
T ss_pred CCCEEeCCcEECCCCEEcCCCEEeeECCCCCEEEeecCchhhhc
Confidence 99999999999999999999999999999999999999988765
No 6
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=100.00 E-value=1.2e-32 Score=215.51 Aligned_cols=185 Identities=29% Similarity=0.405 Sum_probs=160.7
Q ss_pred cEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceee
Q 025890 34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK 112 (246)
Q Consensus 34 ~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~ 112 (246)
+.|.+.|.|.+.+.|+++++||+.|+|++++.|++++.|+.+++| ..+.||+++.|.+++.|+.+|.+..+
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKy-------- 75 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKY-------- 75 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCccccc--------
Confidence 345566666666677777777788888888888888888888888 67899999999999999987654332
Q ss_pred cCcccceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCc
Q 025890 113 KPQLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV 189 (246)
Q Consensus 113 ~~~~~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~ 189 (246)
..+....+||+++.|.++++|..+.. .-+.||+++.+..++++.++|.||++|++..++++.+++.|||++.||+.+
T Consensus 76 kge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 76 KGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred CCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 23334789999999999999999876 458999999999999999999999999999999999999999999999999
Q ss_pred EECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890 190 AVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 226 (246)
Q Consensus 190 ~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~ 226 (246)
-|.+.++||++++|+..|.+.+|+||+.+..|||++.
T Consensus 156 aVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l 192 (260)
T COG1043 156 AVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARL 192 (260)
T ss_pred eEEEEEEEcchheeccccccccCCCCeEEecCCcccc
Confidence 9999999999999999999999999999888888754
No 7
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00 E-value=2.1e-31 Score=220.48 Aligned_cols=184 Identities=31% Similarity=0.419 Sum_probs=147.7
Q ss_pred EcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecC
Q 025890 36 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKP 114 (246)
Q Consensus 36 I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (246)
|.+.|.|++.+.|++++.|+++|+|++++.||++|.|++++.| .++.||++|.|++++.|+.++.+.... .
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~--------g 76 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYK--------G 76 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeeccc--------C
Confidence 4444444445555555555555555555666666666666666 457788889999999998755432211 1
Q ss_pred cccceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEE
Q 025890 115 QLLNARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV 191 (246)
Q Consensus 115 ~~~~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v 191 (246)
....+.||+++.|+++++|..... ..+.||+++.++.++.++++|.||+++.++.++.+.++++|||+|+||+++.|
T Consensus 77 ~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i 156 (262)
T PRK05289 77 EPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAV 156 (262)
T ss_pred CCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeeccee
Confidence 123789999999999999987642 35899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890 192 RDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227 (246)
Q Consensus 192 ~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~ 227 (246)
.++++||++++|+++|+|++|+||+.++.|+|++..
T Consensus 157 ~~~v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~ 192 (262)
T PRK05289 157 HQFVRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLR 192 (262)
T ss_pred cCCCEECCCCEEeeecceeccCCCCeEEecccCeEe
Confidence 999999999999999999999999999999999863
No 8
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.97 E-value=5.3e-29 Score=205.74 Aligned_cols=180 Identities=31% Similarity=0.406 Sum_probs=137.0
Q ss_pred CcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCccc
Q 025890 39 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLL 117 (246)
Q Consensus 39 ~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 117 (246)
.+.|++.+.|+++++|+++++|++++.|++++.|++++.| .++.||++|.|++++.|++.++.... .....
T Consensus 5 ~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~--------~g~~~ 76 (254)
T cd03351 5 TAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKY--------KGEPT 76 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceee--------cCCCc
Confidence 3334444444444444444444444555555555555555 34667777788888888754322111 11112
Q ss_pred ceEECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCC
Q 025890 118 NARIGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDH 194 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~ 194 (246)
.+.||+++.|+++++|..+.. ..+.||+++.++.++.+.+++.||+++.++.++.+..+++||++|+|+.++.+.++
T Consensus 77 ~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~ 156 (254)
T cd03351 77 RLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF 156 (254)
T ss_pred eEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC
Confidence 788999999999999987543 25899999999999999999999999999999999999999999999999999999
Q ss_pred cEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890 195 VSIASKVRLAANSCVFKDITEPGDYGGFPAVP 226 (246)
Q Consensus 195 ~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~ 226 (246)
++|+++++|+++|+|++++|+++++.|+|++.
T Consensus 157 v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~ 188 (254)
T cd03351 157 CRIGRHAMVGGGSGVVQDVPPYVIAAGNRARL 188 (254)
T ss_pred cEECCCCEECcCCEEeeecCCCeEEEccCCeE
Confidence 99999999999999999999999999998863
No 9
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.97 E-value=9.3e-29 Score=204.29 Aligned_cols=177 Identities=29% Similarity=0.422 Sum_probs=136.7
Q ss_pred ECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceE
Q 025890 42 VHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR 120 (246)
Q Consensus 42 I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (246)
|++.++|++++.|+++++|++++.|++++.|+++|.| .++.||++|.|++++.|+..++.... ......+.
T Consensus 7 I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~--------~g~~~~v~ 78 (254)
T TIGR01852 7 IEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKY--------KGERTELI 78 (254)
T ss_pred eCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceee--------cCccceEE
Confidence 3333333344444444444444444455555555544 34667777888888888654322111 01113789
Q ss_pred ECCCcEECcccEEcCCCc---cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 121 IGNHVEIGANSCIDRGSW---RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 121 Ig~~~~ig~~~~i~~~~~---~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
||+++.|+++++|..+.. .++.||+++.++.++.+.+++.||++++++.++.+..+++|||+|+|+.++.+.++++|
T Consensus 79 IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~I 158 (254)
T TIGR01852 79 IGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRI 158 (254)
T ss_pred ECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEE
Confidence 999999999999987643 36899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVP 226 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~ 226 (246)
+++++|+++|+|++++|+++++.|+|++.
T Consensus 159 g~~~~Ig~~s~V~~~i~~~~~~~G~pa~~ 187 (254)
T TIGR01852 159 GRYAMIGGLSAVSKDVPPYGLVEGNRARL 187 (254)
T ss_pred CCCCEEeeeeeEeeecCCCcEEecCcCee
Confidence 99999999999999999999999999987
No 10
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.96 E-value=8.8e-27 Score=185.14 Aligned_cols=175 Identities=23% Similarity=0.341 Sum_probs=147.4
Q ss_pred eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890 23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF 102 (246)
Q Consensus 23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~ 102 (246)
.+.+.+++++++.|++++.|++++.|++++.|+++|.|.+. .|++++.|++++.|.++.|++++.|++++.|..
T Consensus 11 ~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~----- 84 (193)
T cd03353 11 YIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRP----- 84 (193)
T ss_pred EEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEEeeEECCCCEECCccEEcC-----
Confidence 44556666777777777777777777777777777777643 888889999999899999999999999999975
Q ss_pred EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------
Q 025890 103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG------- 175 (246)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~------- 175 (246)
++.|++++.+++++.+. ++.+++++.++..+.+ .++.||+++.++.++.+..
T Consensus 85 ---------------~~~Ig~~~~Ig~~~~i~-----~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~ 143 (193)
T cd03353 85 ---------------GTVLGEGVHIGNFVEIK-----KSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKH 143 (193)
T ss_pred ---------------ccEECCCCEECCcEEEe-----cceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCcccc
Confidence 78899999999988885 4788888888887777 5788888888888876643
Q ss_pred ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCc
Q 025890 176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA 224 (246)
Q Consensus 176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~ 224 (246)
+++|||+++++.++++.++++|+++++|+++|+|++|+|+++++.|.|.
T Consensus 144 ~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~~ 192 (193)
T cd03353 144 RTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARAR 192 (193)
T ss_pred CCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEeccC
Confidence 6899999999999999999999999999999999999999999999875
No 11
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.95 E-value=7.7e-27 Score=208.13 Aligned_cols=184 Identities=24% Similarity=0.317 Sum_probs=151.8
Q ss_pred eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeE
Q 025890 24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 103 (246)
Q Consensus 24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~ 103 (246)
+++++.|++++.|++++.|++++.||+++.|+++|.|. ++.|+++|.|++++.|.++.|+++|.|++++.|..
T Consensus 258 i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~------ 330 (451)
T TIGR01173 258 IRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRP------ 330 (451)
T ss_pred ECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECC------
Confidence 44555666666666667776677777777777777775 67888899999999998999999999999999974
Q ss_pred EcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------c
Q 025890 104 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------S 176 (246)
Q Consensus 104 ~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------~ 176 (246)
.+.|++++.|++++.+. ++.|++++.++..+.+ .++.||+++.++.++.+.+ +
T Consensus 331 --------------~~~i~~~~~Ig~~~~i~-----~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~ 390 (451)
T TIGR01173 331 --------------GSVLGAGVHIGNFVETK-----NARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHK 390 (451)
T ss_pred --------------CCEECCCcEEccceeec-----CcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCC
Confidence 68999999999998885 4788888888888777 5688888888888777654 5
Q ss_pred eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCc-hhhHHHHHHh
Q 025890 177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPA-VPIHEWRRQV 234 (246)
Q Consensus 177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~-~~~~~~~~~~ 234 (246)
++|||+|+||.++.+.++++||++++|+++|+|++|+|+++++.|.|+ +.++.|.++.
T Consensus 391 ~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~~~ 449 (451)
T TIGR01173 391 TIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQRNIEGWVRPK 449 (451)
T ss_pred CEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCceeecccccccc
Confidence 999999999999999999999999999999999999999999988655 5566665543
No 12
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.95 E-value=4.6e-26 Score=188.22 Aligned_cols=197 Identities=24% Similarity=0.280 Sum_probs=164.1
Q ss_pred CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------ccEECCC
Q 025890 20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDS 86 (246)
Q Consensus 20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~~Ig~~ 86 (246)
....+++++.+++++.|++++.|+++++|+++++|+++|.|.+++.||+++.|++++.|. .+.||++
T Consensus 4 ~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~ 83 (254)
T cd03351 4 PTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDN 83 (254)
T ss_pred CCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCC
Confidence 345677888888888888888888888888888888888888888999999999999884 5889999
Q ss_pred cEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcE
Q 025890 87 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM 166 (246)
Q Consensus 87 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~ 166 (246)
|.|++++.|...... + ...+.||+++.|+++++|. +++.||+++.++.++.+.+++.||++++
T Consensus 84 ~~Ig~~~~I~~~~~~----~---------~~~~~IG~~~~I~~~~~I~----~~~~IG~~~~i~~~~~i~~~v~Igd~~~ 146 (254)
T cd03351 84 NTIREFVTIHRGTAQ----G---------GGVTRIGNNNLLMAYVHVA----HDCVIGNNVILANNATLAGHVEIGDYAI 146 (254)
T ss_pred CEECCccEEeccccC----C---------CCceEECCCCEECCCCEEC----CCCEECCCcEECCCccccCCcEeCCCcE
Confidence 999999999753210 0 0268999999999999997 4699999999999999999999999999
Q ss_pred EccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe-EEccCchhhHHHHHHhh
Q 025890 167 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVA 235 (246)
Q Consensus 167 i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~-~~g~p~~~~~~~~~~~~ 235 (246)
++.++.+.++++||+++.|++++.|.++ |++++++.+.+....+++...+ ..|.|.....++.+.++
T Consensus 147 Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~ 214 (254)
T cd03351 147 IGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIAAGNRARLRGLNLVGLKRRGFSREEIRALKRAYR 214 (254)
T ss_pred ECCcceECCCcEECCCCEECcCCEEeee--cCCCeEEEccCCeEeccceeceeecCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999998 5789998877666555655554 45888877777766664
No 13
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=2.6e-26 Score=204.98 Aligned_cols=203 Identities=20% Similarity=0.316 Sum_probs=164.7
Q ss_pred Eeechhhhhhhccc------CCCce--------eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCC
Q 025890 5 VSDIESRQQFQKWH------NGGGI--------FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQST 70 (246)
Q Consensus 5 ~~~~~~~~~~~~~~------~~~~~--------i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~ 70 (246)
|.++.+.+.|++.. ..+.. +.....+++++.|+++|.|.+++.|++++.|+++|.|. +++|+++|
T Consensus 229 ~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~ 307 (456)
T PRK09451 229 RLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDC 307 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCC
Confidence 55677777766532 21211 22344567788888888888888888888888888885 78999999
Q ss_pred EECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEEC
Q 025890 71 NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKID 150 (246)
Q Consensus 71 ~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~ 150 (246)
.|++++.|.++.|++++.|++++.|.. .+.+++++.|++++.+. ++.+++++.++
T Consensus 308 ~I~~~~~i~~~~ig~~~~Ig~~~~i~~--------------------~~~i~~~~~ig~~~~i~-----~~~i~~~~~~~ 362 (456)
T PRK09451 308 EISPYSVVEDANLGAACTIGPFARLRP--------------------GAELAEGAHVGNFVEMK-----KARLGKGSKAG 362 (456)
T ss_pred EEcCCEEEeCCccCCCcEecCceEEeC--------------------CCEECCCceeccceeee-----ceeeCCCCccC
Confidence 999999999999999999999999975 78899999999998885 46788888887
Q ss_pred CCCEEccCcEECCCcEEccceeEec-------ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE-Ecc
Q 025890 151 NLVQIGHNVAIGKSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGF 222 (246)
Q Consensus 151 ~~~~i~~~~~Ig~~~~i~~~~~~~~-------~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~-~g~ 222 (246)
..+.+ .++.||++|.|+.++.+.. .++|||+|+||.++++.++++|+++++|+++|++++|+|+++.+ .|.
T Consensus 363 ~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~ 441 (456)
T PRK09451 363 HLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRV 441 (456)
T ss_pred ccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEecc
Confidence 77666 4677777777777765542 48999999999999999999999999999999999999999976 569
Q ss_pred CchhhHHHHHHh
Q 025890 223 PAVPIHEWRRQV 234 (246)
Q Consensus 223 p~~~~~~~~~~~ 234 (246)
|++.+.+|.|..
T Consensus 442 ~~~~~~~~~~~~ 453 (456)
T PRK09451 442 PQRHIQGWQRPV 453 (456)
T ss_pred Cceecccccccc
Confidence 999998886654
No 14
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=4.6e-26 Score=192.41 Aligned_cols=198 Identities=22% Similarity=0.320 Sum_probs=165.2
Q ss_pred hhhhhhcccCCCceecc--CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCceEEeccE
Q 025890 10 SRQQFQKWHNGGGIFHQ--SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVALSNCI 82 (246)
Q Consensus 10 ~~~~~~~~~~~~~~i~~--~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~-----~~ig~~~~I~~~~~I~~~~ 82 (246)
.++...+||..++.+.. ..+|+..+.|+.++.|.+++.|.++++||++|+|+++ +.|++++.|...++|+++.
T Consensus 243 q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~ 322 (460)
T COG1207 243 QRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGST 322 (460)
T ss_pred HHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccE
Confidence 44556778888886633 4678888888888888888888777777777777777 5667777777777778899
Q ss_pred ECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEEC
Q 025890 83 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIG 162 (246)
Q Consensus 83 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig 162 (246)
++++|.||+++.|.+ .+.|++++.||.++.+. ++.||+++..+.-+++ .++.||
T Consensus 323 vg~~~~VGPfA~LRP--------------------g~~L~~~~hIGNFVEvK-----~a~ig~gsKa~HLtYl-GDA~iG 376 (460)
T COG1207 323 VGEGATVGPFARLRP--------------------GAVLGADVHIGNFVEVK-----KATIGKGSKAGHLTYL-GDAEIG 376 (460)
T ss_pred ecCCcccCCccccCC--------------------cCcccCCCeEeeeEEEe-----cccccCCccccceeee-ccceec
Confidence 999999999999986 88999999999999886 6789999999888888 777888
Q ss_pred CCcEEccceeEec-------ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE-ccCchhhHHHHHH
Q 025890 163 KSCMLCGQVGIAG-------SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-GFPAVPIHEWRRQ 233 (246)
Q Consensus 163 ~~~~i~~~~~~~~-------~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~-g~p~~~~~~~~~~ 233 (246)
.++-|+.++...+ .++||++++||+++.+...++||+++.+++||++++|+|++++.. +.+.+.++.|.+.
T Consensus 377 ~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~egw~~~ 455 (460)
T COG1207 377 ENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNKEGWVRK 455 (460)
T ss_pred CCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeeccccccc
Confidence 8888877776654 399999999999999999999999999999999999999999755 6778888888765
No 15
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=2.6e-25 Score=198.70 Aligned_cols=201 Identities=21% Similarity=0.322 Sum_probs=137.3
Q ss_pred EeechhhhhhhcccC-------------CCceeccCc-EECCCcEEcCCcEE------CcCcEECCCcEECCCCEECCCc
Q 025890 5 VSDIESRQQFQKWHN-------------GGGIFHQSA-CIDSTVLIEVGAIV------HSKAVLGANVCIGSGTVVGPAV 64 (246)
Q Consensus 5 ~~~~~~~~~~~~~~~-------------~~~~i~~~~-~i~~~~~I~~~a~I------~~~~~i~~~~~Ig~~~~i~~~~ 64 (246)
|.++++++.|.+.+. ....+++++ .+++++.|++++.| ++++.|++++.|+++|.|. ++
T Consensus 226 ~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~ 304 (459)
T PRK14355 226 IMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK-GC 304 (459)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEe-CC
Confidence 777777777654411 111333332 34444444444444 4444444444444444443 45
Q ss_pred EECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890 65 TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 144 (246)
Q Consensus 65 ~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig 144 (246)
+|++++.|++++.+.++.|++++.|++++.+.+ .+.|++++.|+.++.+. ++.+|
T Consensus 305 ~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~--------------------~~~i~~~~~ig~~~~~~-----~~~ig 359 (459)
T PRK14355 305 RIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRP--------------------GTELSAHVKIGNFVETK-----KIVMG 359 (459)
T ss_pred EEcCCCEECCCeEEeCCEECCCCEECCCCEECC--------------------CCEeCCCCEECCCcccc-----CCEEC
Confidence 666666666666667777777777777777764 67788888888777554 46777
Q ss_pred CCCEECCCCEEccCcEECCCcEEccceeEe-------cceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCC
Q 025890 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIA-------GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG 217 (246)
Q Consensus 145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~-------~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~ 217 (246)
+++.+...+.+ .++.||+++.|+.++.+. ..+.||++|+||.++.+.++++||++++|+++|+|++|+|+++
T Consensus 360 ~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~~ 438 (459)
T PRK14355 360 EGSKASHLTYL-GDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPDS 438 (459)
T ss_pred CCceeeeeccc-cCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCCc
Confidence 77777666655 466777777777666542 3589999999999999999999999999999999999999999
Q ss_pred eEEc-cCchhhHHHHH
Q 025890 218 DYGG-FPAVPIHEWRR 232 (246)
Q Consensus 218 ~~~g-~p~~~~~~~~~ 232 (246)
++.| .|+...+.|+.
T Consensus 439 ~~~~~~~~~~~~~~~~ 454 (459)
T PRK14355 439 LAIARSPQVNKEGWKL 454 (459)
T ss_pred EEEeccceeccccccc
Confidence 9887 56666555543
No 16
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=4e-25 Score=198.55 Aligned_cols=183 Identities=20% Similarity=0.292 Sum_probs=138.1
Q ss_pred CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceE-----EeccEECCCcEECCCeEECCCCce
Q 025890 27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVA-----LSNCIIGDSCIIHNGVCIGQDGFG 101 (246)
Q Consensus 27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~-----I~~~~Ig~~~~I~~~~~i~~~~~~ 101 (246)
.+++.+++.|++++.|++++.|++++.||++|.|++++.|. ++.|++++. +.++.|++++.|++++.+..
T Consensus 265 ~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~---- 339 (482)
T PRK14352 265 TTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRP---- 339 (482)
T ss_pred eEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecC----
Confidence 45566666666666666666666666666666666555552 345555554 46777888888888887754
Q ss_pred eEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec------
Q 025890 102 FFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG------ 175 (246)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~------ 175 (246)
.+.||+++.++.++.+. .+.+++++.++....+ .++.||++|.|+.++.+.+
T Consensus 340 ----------------~~vIg~~~~ig~~~~~~-----~~~I~~~~~i~~~~~i-~~~~Ig~~~~IG~~~~i~~~~~~~~ 397 (482)
T PRK14352 340 ----------------GTVLGEEGKLGAFVETK-----NATIGRGTKVPHLTYV-GDADIGEHSNIGASSVFVNYDGVNK 397 (482)
T ss_pred ----------------CcEEcCCCEECCcEEEc-----ccEECCCcEEccCcee-cccEECCCcEECCCcEEeccccccC
Confidence 78888888888887664 4678888888776666 5677777777777766653
Q ss_pred -ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE-EccCchhhHHHHHHhhh
Q 025890 176 -SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY-GGFPAVPIHEWRRQVAN 236 (246)
Q Consensus 176 -~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~-~g~p~~~~~~~~~~~~~ 236 (246)
+++||++|+||.++++.++++||++++|+++|++++|+|+++++ .|+|++.+++|.+.++.
T Consensus 398 ~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~~~~~~~~ 460 (482)
T PRK14352 398 HRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEGWVQRKRP 460 (482)
T ss_pred CCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEecccccccccccccccc
Confidence 49999999999999999999999999999999999999999965 58999999999655543
No 17
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=1.1e-24 Score=194.23 Aligned_cols=177 Identities=24% Similarity=0.353 Sum_probs=133.0
Q ss_pred eccCc-EECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCceEEeccEECCCcEECCCeEECC
Q 025890 24 FHQSA-CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 97 (246)
Q Consensus 24 i~~~~-~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~-----~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~ 97 (246)
+++++ .+.+++.|++++.|++++.|++++.||++|.|++++ .|+++|.|+ .+.+.++.|+++|.|++++.|.+
T Consensus 252 i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~ 330 (450)
T PRK14360 252 IDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRP 330 (450)
T ss_pred ecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECC
Confidence 44443 355555555555555555555555555555555444 455666663 34456788999999999999974
Q ss_pred CCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec--
Q 025890 98 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-- 175 (246)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-- 175 (246)
.+.||+++.|++++.+. ++.+++++.+..++.+ .++.|+++|.|+.++.+..
T Consensus 331 --------------------~~~Ig~~~~Ig~~~~i~-----~~~i~~~~~i~~~~~~-~~~~i~~~~~iG~~~~~~~~~ 384 (450)
T PRK14360 331 --------------------EAQIGSNCRIGNFVEIK-----KSQLGEGSKVNHLSYI-GDATLGEQVNIGAGTITANYD 384 (450)
T ss_pred --------------------CCEEeCceEECCCEEEe-----ccccCCCcEeccceec-CCceecCCcEECccceecccc
Confidence 68999999999999886 3678888888777666 4667777777777766543
Q ss_pred -----ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890 176 -----SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227 (246)
Q Consensus 176 -----~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~ 227 (246)
+++||++|+||.++++.++++||++++|+++|+|++|+|+++++.|+|++.+
T Consensus 385 ~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~ 441 (450)
T PRK14360 385 GVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVI 441 (450)
T ss_pred ccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceee
Confidence 6999999999999999999999999999999999999999999999877654
No 18
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.93 E-value=1.8e-24 Score=169.73 Aligned_cols=200 Identities=27% Similarity=0.346 Sum_probs=152.7
Q ss_pred eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc------EECCCCEECCceEEe-------------ccEE
Q 025890 23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV------TIGQSTNIGFNVALS-------------NCII 83 (246)
Q Consensus 23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~------~ig~~~~I~~~~~I~-------------~~~I 83 (246)
.+||.|.|++.|.|++++.|++.|.|+++++|++++.|.+++ .||.+++|.+.+.|. ...|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 455666666666665555555555555555555555555555 555555555555551 3689
Q ss_pred CCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECC
Q 025890 84 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGK 163 (246)
Q Consensus 84 g~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~ 163 (246)
|++|.|.+++.+..... ...+.+.||+++.+.+++.+. ++|.||++|.+..++.++.++.||+
T Consensus 85 G~~n~IRE~vTi~~GT~-------------~g~g~T~IGdnnl~May~HVA----HDC~iGn~~ilaNnatLAGHV~igD 147 (260)
T COG1043 85 GDNNTIREFVTIHRGTV-------------QGGGVTRIGDNNLIMAYAHVA----HDCVIGNNCILANNATLAGHVEVGD 147 (260)
T ss_pred CCCCeEeeEEEEecccc-------------CCceeEEECCCCEEEEeeeee----ccceecCcEEEecCCeEeccEEECC
Confidence 99999999999975321 112378999999999999999 6799999999999999999999999
Q ss_pred CcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe-EEccCchhhHHHHHHhhhhhhcc
Q 025890 164 SCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD-YGGFPAVPIHEWRRQVANQIRSS 241 (246)
Q Consensus 164 ~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~-~~g~p~~~~~~~~~~~~~~~~~~ 241 (246)
++.+++.+.+...++||++++||+.+-|.+|+ .+++++..+--..+.+.--.+ ..|.+.+.+..++++++.+.+-.
T Consensus 148 ~aiiGG~saVHQFvrIG~~amiGg~S~v~~DV--pPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i~alr~ayk~lfr~~ 224 (260)
T COG1043 148 YAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDV--PPYVIASGNHARLRGLNIVGLKRRGFSREEIHALRKAYKLLFRSG 224 (260)
T ss_pred EEEEcCcceEEEEEEEcchheeccccccccCC--CCeEEecCCcccccccceeeeeccCCCHHHHHHHHHHHHHHeeCC
Confidence 99999999999999999999999999999994 578887777655555555554 56899999999988888776643
No 19
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.92 E-value=1.4e-23 Score=173.42 Aligned_cols=200 Identities=26% Similarity=0.311 Sum_probs=158.3
Q ss_pred CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------ccEECCCc
Q 025890 21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSC 87 (246)
Q Consensus 21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~~Ig~~~ 87 (246)
.+.++++++|++++.|++++.|++++.|++++.|+++|.|.+++.||+++.|++++.|. .+.||++|
T Consensus 4 ~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 83 (254)
T TIGR01852 4 TAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNN 83 (254)
T ss_pred CCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCC
Confidence 45567777777777778888888888888888888888888888889999999999885 58899999
Q ss_pred EECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEE
Q 025890 88 IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCML 167 (246)
Q Consensus 88 ~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i 167 (246)
.|++++.|...... ....+.||+++.|++++++. +++.||+++.++.++.+.++++||+++++
T Consensus 84 ~I~~~~~I~~~~~~-------------~~~~~~IG~~~~I~~~~~I~----~~~~Ig~~~~i~~~~~i~~~~~Igd~~~I 146 (254)
T TIGR01852 84 TIREFVTINRGTAS-------------GGGVTRIGNNNLLMAYSHIA----HDCVVGNHVILANNATLAGHVEVGDYAII 146 (254)
T ss_pred EECCCCEECCcccC-------------CCCcEEECCCCEECCCCEEc----cCCEECCCCEECCCCEECCCcEECCCcEE
Confidence 99999999753210 00278999999999999997 46999999999999999999999999999
Q ss_pred ccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCC-eEEccCchhhHHHHHHhhhhhh
Q 025890 168 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIR 239 (246)
Q Consensus 168 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~-~~~g~p~~~~~~~~~~~~~~~~ 239 (246)
+.++.+.++++|+++++|+++++|.++ |++++++...+...+...... ...+.+.....++.+.++.+.+
T Consensus 147 g~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 217 (254)
T TIGR01852 147 GGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLVEGNRARLRGLNIVGLRRRGFSREDITAIKKAYRLLFR 217 (254)
T ss_pred eccCEECCCcEECCCCEEeeeeeEeee--cCCCcEEecCcCeecccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 889999877655443322112 2345555555555554444443
No 20
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=1.6e-23 Score=187.18 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=140.2
Q ss_pred eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeE
Q 025890 24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFF 103 (246)
Q Consensus 24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~ 103 (246)
+++++.+++++.|..++.|++++.|++++.|+++|.|. +++|+++|.|++++.|.+++|+++|.|++++.|.+
T Consensus 266 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~------ 338 (456)
T PRK14356 266 IGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRP------ 338 (456)
T ss_pred ECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcccceecccEECCceEECC------
Confidence 34445555555555555555566677777777777774 57888888888888888899999999999999864
Q ss_pred EcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe-------cc
Q 025890 104 VDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA-------GS 176 (246)
Q Consensus 104 ~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~-------~~ 176 (246)
++.+|+++.++.++.+. ++.+++++.+...+.++ ++.||+++.++.++... .+
T Consensus 339 --------------~~~ig~~~~ig~~~~i~-----~~~i~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~ 398 (456)
T PRK14356 339 --------------GAVLEEGARVGNFVEMK-----KAVLGKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHR 398 (456)
T ss_pred --------------CCEECCCCEecCCceee-----eeEecCCcEeccccccc-CeEECCCCEECCCceeeccccccCCC
Confidence 67889999999888875 46788888888877774 57888888887776542 35
Q ss_pred eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890 177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227 (246)
Q Consensus 177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~ 227 (246)
++||+++++|.++.+.++++||++++|+++|+|++|+|+++++.|......
T Consensus 399 ~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~~~~~~~~~ 449 (456)
T PRK14356 399 TVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLAIARGRQKN 449 (456)
T ss_pred CEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEEEEecceee
Confidence 899999999999999999999999999999999999999999887765444
No 21
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.92 E-value=7.5e-24 Score=175.28 Aligned_cols=181 Identities=26% Similarity=0.347 Sum_probs=156.3
Q ss_pred CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCC
Q 025890 20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD 98 (246)
Q Consensus 20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~ 98 (246)
....+++.+.+.+.+.+++++.|+++++|++++.||+++.|.++++|++++.||+++.| .+++|+.++.||.+|.|++
T Consensus 98 ~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~- 176 (338)
T COG1044 98 PAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHS- 176 (338)
T ss_pred cccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECC-
Confidence 34567888999999999999999999999999999999999999999999999999988 7888888888888888886
Q ss_pred CceeEEcCCCceeecCcccceEECCCcEECcccEEcCCC---ccCeEECCCCEECCCCEEccC----cEECCCcEEccce
Q 025890 99 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS---WRDTVIGDHSKIDNLVQIGHN----VAIGKSCMLCGQV 171 (246)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~---~~~~~ig~~~~v~~~~~i~~~----~~Ig~~~~i~~~~ 171 (246)
.+.||.+.+....+.+.... .+.+.|++++.+|.|+.|.+. +.|++++.|...+
T Consensus 177 -------------------GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~v 237 (338)
T COG1044 177 -------------------GAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLV 237 (338)
T ss_pred -------------------CCEEccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCcEEccee
Confidence 78888888888776555111 157899999999999999877 9999999999999
Q ss_pred eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEE
Q 025890 172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYG 220 (246)
Q Consensus 172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~ 220 (246)
.+..+|+||++|.|.+++-+.+.+.||++++++..+.+... +-+++.+.
T Consensus 238 qIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~ 288 (338)
T COG1044 238 QIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIG 288 (338)
T ss_pred EEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEe
Confidence 99999999999999999999999999999999999998864 45666554
No 22
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=8.8e-24 Score=188.39 Aligned_cols=179 Identities=20% Similarity=0.268 Sum_probs=142.8
Q ss_pred eeccC-cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-----eccEECCCcEECCCeEEC
Q 025890 23 IFHQS-ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-----SNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 23 ~i~~~-~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-----~~~~Ig~~~~I~~~~~i~ 96 (246)
.++++ +.+++++.|++++.|++++.|++++.||++|+|++++.|. ++.|+++|.| .++.|++++.|++++.|.
T Consensus 244 ~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~ 322 (448)
T PRK14357 244 ILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLR 322 (448)
T ss_pred EeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEEC
Confidence 35553 5788888888888888888888888888888888877664 3666666666 567888888888888886
Q ss_pred CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEe--
Q 025890 97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIA-- 174 (246)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~-- 174 (246)
. .+.||+++.|++++.+. .+.|++++.+...+.+ .++.||+++.|+.++.+.
T Consensus 323 ~--------------------~~~ig~~~~Ig~~~~i~-----~~~ig~~~~~~~~~~~-~~~~Ig~~~~ig~~~~~~~~ 376 (448)
T PRK14357 323 E--------------------GTVLKKSVKIGNFVEIK-----KSTIGENTKAQHLTYL-GDATVGKNVNIGAGTITCNY 376 (448)
T ss_pred C--------------------cccccCCcEecCceeee-----ccEEcCCcCccccccc-cCcEECCCcEECCCcccccc
Confidence 3 68899999999888775 3677777777666555 356666666666665543
Q ss_pred -----cceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890 175 -----GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH 228 (246)
Q Consensus 175 -----~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~ 228 (246)
.+++|||+++||.+++|.++++||+++.|+++|++++|+|+++++.|+|++...
T Consensus 377 ~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~ 435 (448)
T PRK14357 377 DGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVK 435 (448)
T ss_pred cccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEec
Confidence 359999999999999999999999999999999999999999999999997754
No 23
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=1.7e-23 Score=186.41 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=110.2
Q ss_pred cCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECC
Q 025890 44 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN 123 (246)
Q Consensus 44 ~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 123 (246)
+.+.|++++.|+++++|++++.|+++|.|++++.|.++.||++|.|++++.|.+ ++.||+
T Consensus 267 ~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~--------------------~~~ig~ 326 (446)
T PRK14353 267 YDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRP--------------------GAELGE 326 (446)
T ss_pred CceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEec--------------------cceecC
Confidence 333444444444444444444455555555555565666667777777776653 566777
Q ss_pred CcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeE-------ecceEECCCeEECcCcEECCCcE
Q 025890 124 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGI-------AGSATIGDYVTLGGRVAVRDHVS 196 (246)
Q Consensus 124 ~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~-------~~~~~Ig~~~~Ig~~~~v~~~~~ 196 (246)
++.|++++.+. ++.+++++.++.++.+ .++.||+++.++.++.+ ..+++||++|+||+++++.++++
T Consensus 327 ~~~Ig~~~~i~-----~~~i~~~~~i~~~~~i-~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ 400 (446)
T PRK14353 327 GAKVGNFVEVK-----NAKLGEGAKVNHLTYI-GDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVT 400 (446)
T ss_pred CeEEcCceEEe-----ceEECCCCEECCeeEE-cCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCE
Confidence 77777776664 3566666666665555 44566666666665544 23689999999999999999999
Q ss_pred ECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890 197 IASKVRLAANSCVFKDITEPGDYGGFPAVPI 227 (246)
Q Consensus 197 ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~ 227 (246)
||++++|+++|+|++|+|+++++.|.|....
T Consensus 401 Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~~ 431 (446)
T PRK14353 401 IGDGAYIASGSVITEDVPDDALALGRARQET 431 (446)
T ss_pred ECCCCEECCCCEECccCCCCCEEEecCceEe
Confidence 9999999999999999999999999988553
No 24
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=3.5e-23 Score=184.98 Aligned_cols=183 Identities=22% Similarity=0.350 Sum_probs=143.6
Q ss_pred cEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890 28 ACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF 102 (246)
Q Consensus 28 ~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~-----~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~ 102 (246)
+.+.+++.|++++.|++++.|++++.|+++|.|++++ .|+++|.|+ ++.+.++.||++|.|++++.|..
T Consensus 260 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~----- 333 (458)
T PRK14354 260 TYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRP----- 333 (458)
T ss_pred EEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecC-----
Confidence 4566666666666666666665555555555555555 555566665 34456788899999999988874
Q ss_pred EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------
Q 025890 103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG------- 175 (246)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~------- 175 (246)
.+.||+++.++.++.+. ++.+++++.++..+.+ .++.||+++.++.++.+.+
T Consensus 334 ---------------~~~Ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~~~~~~~~~ 392 (458)
T PRK14354 334 ---------------GSVIGEEVKIGNFVEIK-----KSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITVNYDGKNKF 392 (458)
T ss_pred ---------------CCEEeCCcEECCceEEe-----eeEECCCCEecceeee-cCcccCCceEEcCceeeccccccccc
Confidence 78899999999999886 4788999998888777 6788888888888887654
Q ss_pred ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh-hHHHHHHhhhh
Q 025890 176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP-IHEWRRQVANQ 237 (246)
Q Consensus 176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~-~~~~~~~~~~~ 237 (246)
+++|+|++++|.++.+.++++||++++|+++|+|++|+|+++++.|.|+.. ++-|.+...++
T Consensus 393 ~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (458)
T PRK14354 393 KTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARARQVNKEGYVKKLPHK 455 (458)
T ss_pred CCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEeccceecccchhhhhhhh
Confidence 699999999999999999999999999999999999999999999998754 55666655543
No 25
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=3.5e-23 Score=185.60 Aligned_cols=169 Identities=18% Similarity=0.234 Sum_probs=138.0
Q ss_pred ccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEE
Q 025890 25 HQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFV 104 (246)
Q Consensus 25 ~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~ 104 (246)
.+++.|++++.|++++.|.+++.|+++++|+++|.|+ +++|+++|.|++++.|.++.||+++.|++++.+..
T Consensus 268 ~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~------- 339 (481)
T PRK14358 268 EDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRP------- 339 (481)
T ss_pred cCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcC-------
Confidence 4555666666677777777777777777777777774 57888889999998888899999999999998864
Q ss_pred cCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEec-------ce
Q 025890 105 DEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAG-------SA 177 (246)
Q Consensus 105 ~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~-------~~ 177 (246)
.+.||+++.|++++.+. ++.|++++.++..+.+ .+++||++|.++.++++.+ .+
T Consensus 340 -------------~~~Ig~~~~Ig~~~~i~-----~~~i~~~~~ig~~~~~-~~~~ig~~~~ig~~~~i~~~~~~~~~~~ 400 (481)
T PRK14358 340 -------------GTVLGEGVHIGNFVETK-----NARLDAGVKAGHLAYL-GDVTIGAETNVGAGTIVANFDGVNKHQS 400 (481)
T ss_pred -------------CcEECCCCEECCCEEEC-----CceecCCcccCceEEE-CCeEEcCCceEcCCEEEeCCCCccCCCC
Confidence 78999999999988875 4567777777776555 5577777777777766653 47
Q ss_pred EECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE
Q 025890 178 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG 220 (246)
Q Consensus 178 ~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~ 220 (246)
.||++|+||+++++.++++||++++|+++|++++|+|++..+.
T Consensus 401 ~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~ 443 (481)
T PRK14358 401 KVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAV 443 (481)
T ss_pred EECCCeEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEE
Confidence 9999999999999999999999999999999999999999765
No 26
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.91 E-value=5.8e-23 Score=170.12 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=144.3
Q ss_pred CCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------ccEECCC
Q 025890 20 GGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDS 86 (246)
Q Consensus 20 ~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~~Ig~~ 86 (246)
..+.+++++.|++++.|++++.|++++.|++++.|++++.|.++++||++|.|++++.|. .+.||++
T Consensus 7 p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~ 86 (262)
T PRK05289 7 PTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDN 86 (262)
T ss_pred CCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCC
Confidence 344555555555666666666666666666666666666666677777777777777774 4788889
Q ss_pred cEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcE
Q 025890 87 CIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCM 166 (246)
Q Consensus 87 ~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~ 166 (246)
|.|++++.|..... .....+.||+++.|++++.|. +++.+|+++.+..++.+..++.||++++
T Consensus 87 ~~I~e~~~I~~~~~-------------~~~~~t~IG~~~~I~~~~~I~----h~~~IG~~v~i~~~~~i~g~v~Igd~~~ 149 (262)
T PRK05289 87 NTIREFVTINRGTV-------------QGGGVTRIGDNNLLMAYVHVA----HDCVVGNHVILANNATLAGHVEVGDYAI 149 (262)
T ss_pred CEECCCeEEecccc-------------cCCCeeEECCceEECCCCEEC----CeEEECCCeEECCccccccccccCCcEE
Confidence 99998888864210 001257899999999999998 5699999999999999999999999999
Q ss_pred EccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEeccCCCCC-eEEccCchhhHHHHHHhhhhhh
Q 025890 167 LCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIR 239 (246)
Q Consensus 167 i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~~~~~~~-~~~g~p~~~~~~~~~~~~~~~~ 239 (246)
++.++.+..+++||++++|+++++|.++ |.+++++... +.+.. +..-. ...|.+...+..+.++++.+.+
T Consensus 150 Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~~G~pa~~~~-~n~~g~~~~~~~~~~~~~i~~a~~~~~~ 221 (262)
T PRK05289 150 IGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLAEGNPARLRG-LNLVGLKRRGFSREEIHALRRAYKLLYR 221 (262)
T ss_pred EeecceecCCCEECCCCEEeeecceecc--CCCCeEEecccCeEec-cchhhhhhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 4677766443 33321 22111 2345555666655555554444
No 27
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=2e-23 Score=185.10 Aligned_cols=199 Identities=22% Similarity=0.246 Sum_probs=143.4
Q ss_pred EEeechhhhhhhcccCCCc-ee-----ccCc--EECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCc
Q 025890 4 YVSDIESRQQFQKWHNGGG-IF-----HQSA--CIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFN 75 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~i-----~~~~--~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~ 75 (246)
+|.++.+++.+.+...... .+ ..+. ...+.+.+.++++|.+++.|+++++|+++|.|. ++.|+++|+|++
T Consensus 216 ~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~- 293 (430)
T PRK14359 216 NFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEE- 293 (430)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEec-
Confidence 7888888887654432100 00 0111 223455567777777788888888888888887 888888888877
Q ss_pred eEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEE
Q 025890 76 VALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI 155 (246)
Q Consensus 76 ~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i 155 (246)
+.+.++.||+++.|++++.|. ++.||+++.|+... +. ++.++..+.+++ +.|
T Consensus 294 ~~i~~~~ig~~~~i~~~~~i~---------------------~~~ig~~~~i~~~~-~~-----~~~i~~~~~i~d-~~I 345 (430)
T PRK14359 294 SIIENSDVGPLAHIRPKSEIK---------------------NTHIGNFVETKNAK-LN-----GVKAGHLSYLGD-CEI 345 (430)
T ss_pred cEEeCCEECCCCEECCCcEEe---------------------ccEEcCcEEEcccE-ec-----cccccccccccC-CEE
Confidence 667888999999999888885 77888888887743 32 245555555543 444
Q ss_pred ccCcEECCCcEEccceeEec-ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEc-cCchhhHHHHH
Q 025890 156 GHNVAIGKSCMLCGQVGIAG-SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGG-FPAVPIHEWRR 232 (246)
Q Consensus 156 ~~~~~Ig~~~~i~~~~~~~~-~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g-~p~~~~~~~~~ 232 (246)
++++.||.++.+..+....+ .+.||++|+||+++++.++++||++++|+++|+|.+|+|+++++.| .|++.++.|..
T Consensus 346 g~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~~~~ 424 (430)
T PRK14359 346 DEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSLAISRAPQKNIKNFYY 424 (430)
T ss_pred CCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcEEEeccCceehhhHHH
Confidence 44444444444433322222 4899999999999999999999999999999999999999998765 89999988854
No 28
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.91 E-value=1.1e-22 Score=167.14 Aligned_cols=200 Identities=22% Similarity=0.296 Sum_probs=148.7
Q ss_pred CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-------------ccEECCCc
Q 025890 21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-------------NCIIGDSC 87 (246)
Q Consensus 21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-------------~~~Ig~~~ 87 (246)
.+.+++++.|++++.|++++.|++++.|++++.|++++.|.+++.||+++.|++++.|. .+.||++|
T Consensus 5 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~ 84 (255)
T PRK12461 5 TAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN 84 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce
Confidence 34555666666666666666666666666666666666666677777777777777773 36788888
Q ss_pred EECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEE
Q 025890 88 IIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCML 167 (246)
Q Consensus 88 ~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i 167 (246)
.|++++.|....+ ....+.||+++.+.+++.|. +++.||+++.++.++.+..++.||+++++
T Consensus 85 ~I~e~vtI~~gt~--------------~g~~t~IG~~~~i~~~~~I~----hd~~IG~~v~i~~~~~i~g~v~Igd~a~I 146 (255)
T PRK12461 85 VIREGVTIHRGTK--------------GGGVTRIGNDNLLMAYSHVA----HDCQIGNNVILVNGALLAGHVTVGDRAII 146 (255)
T ss_pred EECCccEEecCcc--------------cCCcEEEcccceeccCcEEC----CCCEECCCcEECCCCccCCceEECCCeEE
Confidence 8888888864211 01268889999998888887 46999999999999999999999999999
Q ss_pred ccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCC-eEEccCchhhHHHHHHhhhhhhc
Q 025890 168 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPG-DYGGFPAVPIHEWRRQVANQIRS 240 (246)
Q Consensus 168 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~-~~~g~p~~~~~~~~~~~~~~~~~ 240 (246)
+.++.+..+++||++++|+++++|.++ |++++++.....-...+..-. ...|.+...++.+.++++.+.+-
T Consensus 147 g~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~G~pa~~~~~n~vgl~r~g~~~~~~~~~~~~~~~~~~~ 218 (255)
T PRK12461 147 SGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMAGHPTNVHGLNAVGLRRRGFSSRAIRALKRAYKIIYRS 218 (255)
T ss_pred eCCCEECCCCEECCCcEECCCceEecc--CCCCeEEecCcceEeccchhhhhhcCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999 578887765533222333222 23467777777777777666554
No 29
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.90 E-value=3.1e-22 Score=170.16 Aligned_cols=81 Identities=30% Similarity=0.443 Sum_probs=60.8
Q ss_pred cceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcE
Q 025890 117 LNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS 196 (246)
Q Consensus 117 ~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ 196 (246)
..+.||+++.|+..+.|. +++.||+++.+..++.+.++++||++++++.++.+.+++.||++|+|++++.|.+++
T Consensus 216 ~~t~Ig~~~~I~n~v~I~----~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v- 290 (324)
T TIGR01853 216 DDTIIGEGTKIDNLVQIA----HNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSI- 290 (324)
T ss_pred CcceecCCcEEccCcEEC----CCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEeCCcC-
Confidence 367777777777777776 357788888888888888888888888888888888888888888888888887763
Q ss_pred ECCCCEE
Q 025890 197 IASKVRL 203 (246)
Q Consensus 197 ig~~~~v 203 (246)
++++++
T Consensus 291 -~~~~~~ 296 (324)
T TIGR01853 291 -PPPGVY 296 (324)
T ss_pred -CCCcEE
Confidence 444444
No 30
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.89 E-value=5.3e-22 Score=170.70 Aligned_cols=159 Identities=35% Similarity=0.475 Sum_probs=115.6
Q ss_pred CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-e------------------
Q 025890 19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-S------------------ 79 (246)
Q Consensus 19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~------------------ 79 (246)
..+..+++.+.|++++.|++++.|.+++.|+++++||++|.|++++.|++++.|+++|.| .
T Consensus 116 g~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~ 195 (343)
T PRK00892 116 GEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGW 195 (343)
T ss_pred CCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCce
Confidence 344455555556666666666666666666666666666666655555444444444444 2
Q ss_pred -------ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCC
Q 025890 80 -------NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 152 (246)
Q Consensus 80 -------~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~ 152 (246)
++.||+++.|++++.|.. .....++||+++.++..+.|. +++.||+++.+..+
T Consensus 196 ~~~~~~g~v~Ig~~v~IGa~~~I~~----------------~~~~~t~Ig~~~~i~~~v~I~----~~~~IG~~~~i~~~ 255 (343)
T PRK00892 196 VKIPQLGRVIIGDDVEIGANTTIDR----------------GALDDTVIGEGVKIDNLVQIA----HNVVIGRHTAIAAQ 255 (343)
T ss_pred eeccccccEEECCCcEECCCcEEec----------------CccccceeCCCCEEeCCeEEc----cCCEECCCcEEeee
Confidence 245556666666655542 122378999999999999998 46999999999999
Q ss_pred CEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 153 VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 153 ~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
+.+.+++.||++++++.++.+.++++||++++|++++.+.+++..
T Consensus 256 ~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~ 300 (343)
T PRK00892 256 VGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPE 300 (343)
T ss_pred eeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccCC
Confidence 999999999999999999999999999999999999999988654
No 31
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.87 E-value=4.6e-20 Score=147.87 Aligned_cols=171 Identities=30% Similarity=0.435 Sum_probs=132.5
Q ss_pred cCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECC-----------
Q 025890 18 HNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGD----------- 85 (246)
Q Consensus 18 ~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~----------- 85 (246)
+.+...+++.+++.+++.|+++++|++++.|+++++|+++|+|.+++.|+.++.|++++.| .++.|+.
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ 83 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGG 83 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCc
Confidence 4556778888888888888888888888888888888888888888877777777777777 3355532
Q ss_pred --------CcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEcc
Q 025890 86 --------SCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGH 157 (246)
Q Consensus 86 --------~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~ 157 (246)
.+.|++++.++.... ........+.||+++.++.++.+.. .+.+++++.++.++.+.+
T Consensus 84 ~~~~~~~~~v~Ig~~~~Ig~~~~----------i~~~~~~~~~Ig~~~~i~~~v~I~~----~~~ig~~~~i~~~~~i~~ 149 (205)
T cd03352 84 WVKIPQLGGVIIGDDVEIGANTT----------IDRGALGDTVIGDGTKIDNLVQIAH----NVRIGENCLIAAQVGIAG 149 (205)
T ss_pred EEEcCCcceEEECCCEEECCCCE----------EeccccCCeEECCCCEECCceEEeC----CCEECCCCEECCCCEEcc
Confidence 344555555543210 0111123688999999999999984 589999999999999999
Q ss_pred CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890 158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 204 (246)
Q Consensus 158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~ 204 (246)
++.||++++++.++.+..+++|+++++|++++++.++ ++++.++.
T Consensus 150 ~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~--~~~~~~~~ 194 (205)
T cd03352 150 STTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSI--VPPGEYVS 194 (205)
T ss_pred ccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeE--CCCCCEEE
Confidence 9999999999999999999999999999999999955 55666554
No 32
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.85 E-value=1.5e-20 Score=142.73 Aligned_cols=75 Identities=25% Similarity=0.279 Sum_probs=60.1
Q ss_pred CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHHHHHH
Q 025890 158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRRQ 233 (246)
Q Consensus 158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~~~~~ 233 (246)
.++||+++.|++++++.+ |+|+++|+||.+|+|+.+++||++|+|+++|+|+. .+|+++++.|.|+|.++++.+.
T Consensus 72 p~~IG~~vtIGH~aivHG-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~ 148 (176)
T COG0663 72 PVTIGDDVTIGHGAVVHG-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDE 148 (176)
T ss_pred CeEECCCcEEcCccEEEE-eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChh
Confidence 344444444444445555 88999999999999999999999999999999985 7899999999999999877543
No 33
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.85 E-value=1.2e-19 Score=140.22 Aligned_cols=155 Identities=22% Similarity=0.337 Sum_probs=107.8
Q ss_pred CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCC
Q 025890 19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 98 (246)
Q Consensus 19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~ 98 (246)
..+..+.+.+++++++.|++++.|.++++|++++.|++++.|.++++|+++|.|++++.|.++.|++++.|++++.+.
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~-- 86 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVG-- 86 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEe--
Confidence 334456666777777777777777777777778888888888777788888888888888778888888888777775
Q ss_pred CceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceE
Q 025890 99 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSAT 178 (246)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~ 178 (246)
+++|++++.|++++++....+....+ .+.. .++....+.. ..++.
T Consensus 87 -------------------~siIg~~~~I~~~~~i~~~~~~~~~~----~~~~---~~~~~~~~~~---------~~~~i 131 (163)
T cd05636 87 -------------------DSVLGENVNLGAGTITANLRFDDKPV----KVRL---KGERVDTGRR---------KLGAI 131 (163)
T ss_pred -------------------cCEECCCCEECCCcEEcccCcCCcce----EEEe---cCcceecCCc---------ccCcE
Confidence 67788888888887765431110000 0000 0011111110 12489
Q ss_pred ECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890 179 IGDYVTLGGRVAVRDHVSIASKVRLAANSCVF 210 (246)
Q Consensus 179 Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~ 210 (246)
|+++++||.++.+.+++.|++++.|+++++|.
T Consensus 132 Ig~~~~ig~~~~i~~g~~ig~~~~i~agsvV~ 163 (163)
T cd05636 132 IGDGVKTGINVSLNPGVKIGPGSWVYPGCVVR 163 (163)
T ss_pred EcCCeEECCCcEECCCcEECCCCEECCCcEeC
Confidence 99999999999999999999999999999873
No 34
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.84 E-value=1.6e-19 Score=143.88 Aligned_cols=57 Identities=30% Similarity=0.317 Sum_probs=53.8
Q ss_pred ecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890 174 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 230 (246)
Q Consensus 174 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~ 230 (246)
..++.||++|+||.++++.++++||++++|+++++|++++|+++++.|+||+.++.+
T Consensus 106 ~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~~~~~ 162 (204)
T TIGR03308 106 AKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKLIRRR 162 (204)
T ss_pred CCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchHhhhc
Confidence 356899999999999999999999999999999999999999999999999998765
No 35
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.84 E-value=3.9e-20 Score=150.03 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=99.2
Q ss_pred CCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCC
Q 025890 68 QSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDH 146 (246)
Q Consensus 68 ~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~ 146 (246)
.++.|++++.| .++.||+++.|++++.|.. ++.||+++.|++++.|.. .+.|+++
T Consensus 85 ~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~--------------------~~~IG~~~~I~~~a~I~~----~s~Ig~~ 140 (231)
T TIGR03532 85 INARIEPGAIIRDQVIIGDNAVIMMGAVINI--------------------GAEIGEGTMIDMNAVLGG----RATVGKN 140 (231)
T ss_pred cccEECCCCEEeCCeEECCCCEEecCcccCC--------------------CeEECCCCEEccccccCC----CcEECCC
Confidence 44444444444 4567777777777776653 566777777766665542 2444444
Q ss_pred CEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890 147 SKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 226 (246)
Q Consensus 147 ~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~ 226 (246)
|.++.++.+... ++.. ...++.|+++|+||+++++.+++.|+++++|++++++.+++|+++++.|+||+.
T Consensus 141 ~~Ig~~~~I~~~--~~~~--------~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~ 210 (231)
T TIGR03532 141 VHIGAGAVLAGV--IEPP--------SAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKV 210 (231)
T ss_pred cEEcCCcEEccc--cccc--------cCCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEE
Confidence 444444444220 1100 023689999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhcc
Q 025890 227 IHEWRRQVANQIRSS 241 (246)
Q Consensus 227 ~~~~~~~~~~~~~~~ 241 (246)
++.+++.+..+.+|.
T Consensus 211 i~~~~~~~~~~~~~~ 225 (231)
T TIGR03532 211 IKQVDEKTKDKTELE 225 (231)
T ss_pred eccCChhHhHHHHHH
Confidence 999987766666654
No 36
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.82 E-value=2.5e-19 Score=141.68 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=53.3
Q ss_pred ceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccC--CCCCeEEccCchhhHHHHHHh
Q 025890 176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDI--TEPGDYGGFPAVPIHEWRRQV 234 (246)
Q Consensus 176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~--~~~~~~~g~p~~~~~~~~~~~ 234 (246)
++.|+++|+||.++++.+++.|++++.|+++|+|+++. |+++++.|+||+.++.+.+..
T Consensus 88 g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~ 148 (196)
T PRK13627 88 GCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDE 148 (196)
T ss_pred eEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHH
Confidence 47899999999999999999999999999999999976 889999999999988775543
No 37
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.82 E-value=6.9e-19 Score=132.45 Aligned_cols=65 Identities=11% Similarity=0.161 Sum_probs=54.2
Q ss_pred cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCC-CeEEccCc
Q 025890 157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEP-GDYGGFPA 224 (246)
Q Consensus 157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~-~~~~g~p~ 224 (246)
+++.|+++++++.++.+..+++|++++.|+++++|.++++|+++ +++++|+||+|++ ..++|+|.
T Consensus 74 ~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~~~~~~~~~~g~~~ 139 (139)
T cd03350 74 TPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGRVPPGSVVVAGSLP 139 (139)
T ss_pred CCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecccCCCCEEecccCC
Confidence 44556666666666666777889999999999999999999998 9999999999999 57889983
No 38
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.82 E-value=1.6e-18 Score=137.62 Aligned_cols=151 Identities=26% Similarity=0.421 Sum_probs=113.6
Q ss_pred EECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceE
Q 025890 41 IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNAR 120 (246)
Q Consensus 41 ~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (246)
++.++++|++++.|.+++.|.+++.|+++|.|++++.|.++.|+++|.|++++.|. ++.
T Consensus 11 ~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~---------------------~~~ 69 (193)
T cd03353 11 YIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIE---------------------GAV 69 (193)
T ss_pred EEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEE---------------------eeE
Confidence 33444455555555555555556666666667777777667888999999999886 789
Q ss_pred ECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEEC-------C
Q 025890 121 IGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR-------D 193 (246)
Q Consensus 121 Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~-------~ 193 (246)
+++++.+++++.+.. ++.+++++.++.++.+ +++.|++++.+...+.+ .++.||++|.||+++++. .
T Consensus 70 ig~~~~Ig~~~~I~~----~~~Ig~~~~Ig~~~~i-~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~ 143 (193)
T cd03353 70 IGNGATVGPFAHLRP----GTVLGEGVHIGNFVEI-KKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKH 143 (193)
T ss_pred ECCCCEECCccEEcC----ccEECCCCEECCcEEE-ecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCcccc
Confidence 999999999998874 4788999999988888 57888999988877777 468999999999988774 3
Q ss_pred CcEECCCCEEccCcEEecc--CCCCCe
Q 025890 194 HVSIASKVRLAANSCVFKD--ITEPGD 218 (246)
Q Consensus 194 ~~~ig~~~~v~~~s~v~~~--~~~~~~ 218 (246)
.+.|++++++++++.+... +.+++.
T Consensus 144 ~~vigd~~~ig~~~~i~~~~~Ig~~~~ 170 (193)
T cd03353 144 RTVIGDNVFIGSNSQLVAPVTIGDGAT 170 (193)
T ss_pred CCEECCCeEEccCCEEeCCcEECCCcE
Confidence 6788888888888877642 344443
No 39
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.81 E-value=2.7e-19 Score=159.65 Aligned_cols=147 Identities=22% Similarity=0.350 Sum_probs=127.8
Q ss_pred CcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccc
Q 025890 39 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLN 118 (246)
Q Consensus 39 ~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 118 (246)
.+.+++++.|++++.|++++.|.+++.||+++.|+++|.|.++.|+++|.|++++.+. +
T Consensus 255 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~---------------------~ 313 (451)
T TIGR01173 255 RFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLE---------------------G 313 (451)
T ss_pred eEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEe---------------------c
Confidence 3456777778888888888888888889999999999999999999999999999996 8
Q ss_pred eEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC-----
Q 025890 119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD----- 193 (246)
Q Consensus 119 ~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~----- 193 (246)
+.||+++.|++++.|.. .+.+++++.++.++.+ +++.||+++.+...+.+. ++.||++|+||.++++..
T Consensus 314 ~~ig~~~~Ig~~~~i~~----~~~i~~~~~Ig~~~~i-~~~~ig~~~~i~~~~~i~-~~~Ig~~~~ig~~~~~~~~~~~~ 387 (451)
T TIGR01173 314 SEIGEGCDVGPFARLRP----GSVLGAGVHIGNFVET-KNARIGKGSKAGHLSYLG-DAEIGSNVNIGAGTITCNYDGAN 387 (451)
T ss_pred ccccCCcEECCeeEECC----CCEECCCcEEccceee-cCcEECCCcEecceeeEe-eeEEcCCcEECCCeEEeCccccc
Confidence 89999999999999984 4789999999999998 589999999998888884 699999999999998864
Q ss_pred --CcEECCCCEEccCcEEecc
Q 025890 194 --HVSIASKVRLAANSCVFKD 212 (246)
Q Consensus 194 --~~~ig~~~~v~~~s~v~~~ 212 (246)
++.|+++++|++++.+...
T Consensus 388 ~~~~~Igd~~~ig~~~~i~~~ 408 (451)
T TIGR01173 388 KHKTIIGDGVFIGSNTQLVAP 408 (451)
T ss_pred CCCCEECCCcEECCCCEEECC
Confidence 5889999999999887643
No 40
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.81 E-value=2.7e-18 Score=153.06 Aligned_cols=151 Identities=19% Similarity=0.312 Sum_probs=117.7
Q ss_pred eccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-ccEECCCcEECCCeEECCCCcee
Q 025890 24 FHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGF 102 (246)
Q Consensus 24 i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~ 102 (246)
+++++.|++++.|+++++|++++.|+++++|++++.| .+++||++|.|++++.|. ++.||++|.|++++.+.
T Consensus 265 ~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~------ 337 (446)
T PRK14353 265 FSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHL-EGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVK------ 337 (446)
T ss_pred ECCceEECCCCEECCCCEECCCCEECCCCEECCCeEE-eccEECCCcEECCCeEEeccceecCCeEEcCceEEe------
Confidence 3444555555555555566655666666666665555 368889999999999885 78999999999999885
Q ss_pred EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEE-------ccCcEECCCcEEccceeEec
Q 025890 103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQI-------GHNVAIGKSCMLCGQVGIAG 175 (246)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i-------~~~~~Ig~~~~i~~~~~~~~ 175 (246)
++.|++++.++..+.+. ++.||+++.++.++.+ .+++.||++++++.++.+..
T Consensus 338 ---------------~~~i~~~~~i~~~~~i~-----~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~ 397 (446)
T PRK14353 338 ---------------NAKLGEGAKVNHLTYIG-----DATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVA 397 (446)
T ss_pred ---------------ceEECCCCEECCeeEEc-----CcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeC
Confidence 78889998888887775 4688888888888766 45799999999999999999
Q ss_pred ceEECCCeEECcCcEECCCcEECCCCEE
Q 025890 176 SATIGDYVTLGGRVAVRDHVSIASKVRL 203 (246)
Q Consensus 176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v 203 (246)
+++||++++||++++|.+++. +++++
T Consensus 398 ~~~Ig~~~~ig~~s~v~~~v~--~~~~~ 423 (446)
T PRK14353 398 PVTIGDGAYIASGSVITEDVP--DDALA 423 (446)
T ss_pred CCEECCCCEECCCCEECccCC--CCCEE
Confidence 999999999999999998744 44444
No 41
>PLN02296 carbonate dehydratase
Probab=99.80 E-value=9.3e-19 Score=144.40 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=49.2
Q ss_pred eEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEEccCchhhHHHHH
Q 025890 177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVPIHEWRR 232 (246)
Q Consensus 177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~g~p~~~~~~~~~ 232 (246)
++|+++|+||.++++.+++.|+++++|+++|+|.++ +|+++++.|+||+.++.+..
T Consensus 137 ~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~ 194 (269)
T PLN02296 137 CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTE 194 (269)
T ss_pred CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCCH
Confidence 678889999999999999999999999999999987 89999999999988776643
No 42
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.79 E-value=1.5e-18 Score=137.49 Aligned_cols=58 Identities=31% Similarity=0.358 Sum_probs=55.1
Q ss_pred ecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHH
Q 025890 174 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR 231 (246)
Q Consensus 174 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~ 231 (246)
..+++||++||||.+++|.++++||++++|+++|+|++|+|+++++.|+||+.++.+.
T Consensus 129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~ 186 (203)
T PRK09527 129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN 186 (203)
T ss_pred cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence 4579999999999999999999999999999999999999999999999999998875
No 43
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.79 E-value=3.4e-18 Score=131.06 Aligned_cols=56 Identities=27% Similarity=0.231 Sum_probs=48.9
Q ss_pred eEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHHHHH
Q 025890 177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEWRR 232 (246)
Q Consensus 177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~~~~ 232 (246)
+.||++|+|+.++++.+++.|+++++|++++++.+ ++|+++++.|+|++.++.+.+
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~ 136 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSD 136 (155)
T ss_pred CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCH
Confidence 67888888888888888889999999999998887 789999999999999887654
No 44
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=1e-18 Score=148.19 Aligned_cols=176 Identities=20% Similarity=0.347 Sum_probs=146.5
Q ss_pred cEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccce
Q 025890 40 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA 119 (246)
Q Consensus 40 a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 119 (246)
.+|.+.+.|+.++.|.++++|.+++.||++|+|+++|.|.++.|++++.|.++++|. .+
T Consensus 263 ~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie---------------------~s 321 (460)
T COG1207 263 TYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIE---------------------GS 321 (460)
T ss_pred EEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceee---------------------cc
Confidence 477888889999999999999999999999999999999999999999999999997 89
Q ss_pred EECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC------
Q 025890 120 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD------ 193 (246)
Q Consensus 120 ~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~------ 193 (246)
.+|+++.|||++.+.++ +.+++++.+|..+.+ +++.||+++...+-+++++ +.||++|.||++++...
T Consensus 322 ~vg~~~~VGPfA~LRPg----~~L~~~~hIGNFVEv-K~a~ig~gsKa~HLtYlGD-A~iG~~~NiGAGtItcNYDG~nK 395 (460)
T COG1207 322 TVGEGATVGPFARLRPG----AVLGADVHIGNFVEV-KKATIGKGSKAGHLTYLGD-AEIGENVNIGAGTITCNYDGKNK 395 (460)
T ss_pred EecCCcccCCccccCCc----CcccCCCeEeeeEEE-ecccccCCccccceeeecc-ceecCCceeccceEEEcCCCccc
Confidence 99999999999999965 899999999999999 9999999999998888877 89999999999998743
Q ss_pred -CcEECCCCEEccCcEEecc--CCCCCe------EE-ccCchhhHHHHHHhhhhhhccc
Q 025890 194 -HVSIASKVRLAANSCVFKD--ITEPGD------YG-GFPAVPIHEWRRQVANQIRSSK 242 (246)
Q Consensus 194 -~~~ig~~~~v~~~s~v~~~--~~~~~~------~~-g~p~~~~~~~~~~~~~~~~~~~ 242 (246)
-+.||+++.|+++|.+... +.++++ +. -.|...+.--+.+++++.-+.+
T Consensus 396 ~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~RarQ~~~egw~~ 454 (460)
T COG1207 396 FKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAISRARQTNKEGWVR 454 (460)
T ss_pred ceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEeecceeecccccc
Confidence 2899999999999987643 334443 22 2465555444455555555544
No 45
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.78 E-value=1.2e-17 Score=128.87 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=49.7
Q ss_pred eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCC
Q 025890 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDIT 214 (246)
Q Consensus 141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~ 214 (246)
+.||+++.+..++.+.+ +.||++|+++.++.+.++++||++|+||++++|.+++.++++++++++..+.++..
T Consensus 67 v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~~ 139 (164)
T cd04646 67 MIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQT 139 (164)
T ss_pred eEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEecC
Confidence 33444444444444422 66666666666667777788888888888888888888888888888777776443
No 46
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.77 E-value=1.6e-17 Score=149.08 Aligned_cols=167 Identities=17% Similarity=0.298 Sum_probs=112.8
Q ss_pred ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCC-----cEECCCCEECCceEE-eccEECCCcEECCCeEE
Q 025890 22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPA-----VTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCI 95 (246)
Q Consensus 22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~-----~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i 95 (246)
..+++++.|.+++.|++++.|+++|.| .++.|+++|.|+++ ++|++++.|++++.+ .++.||+++.|++++.|
T Consensus 277 ~~I~~~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 277 VTIEPGVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CEEeCCcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 344444444444445555555555444 22344444444433 455566666666666 35777777777777777
Q ss_pred CCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEEc
Q 025890 96 GQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLC 168 (246)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i~ 168 (246)
. ++.|++++.++..+.+. ++.||++|.++.++.+. +++.||++++++
T Consensus 356 ~---------------------~~~i~~~~~ig~~~~~~-----~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig 409 (481)
T PRK14358 356 K---------------------NARLDAGVKAGHLAYLG-----DVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIG 409 (481)
T ss_pred C---------------------CceecCCcccCceEEEC-----CeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEc
Confidence 5 67777777777776664 47888888888887774 468999999999
Q ss_pred cceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe
Q 025890 169 GQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 218 (246)
Q Consensus 169 ~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~ 218 (246)
.++.+.++++||++++|++++++.+++. +++++... .+++++.....
T Consensus 410 ~~~~i~~~~~Ig~~~~i~~gs~v~~~v~--~~~~~~~~-~~~~~~~~~~~ 456 (481)
T PRK14358 410 SNTTLIAPRVVGDAAFIAAGSAVHDDVP--EGAMAVAR-GKQRNLEGWSR 456 (481)
T ss_pred CCCEEcCCcEECCCCEECCCCEEecccC--CCCEEEec-ccceeccchhh
Confidence 9999999999999999999999998754 45544433 36677776654
No 47
>PRK10502 putative acyl transferase; Provisional
Probab=99.77 E-value=7.2e-18 Score=132.38 Aligned_cols=58 Identities=33% Similarity=0.362 Sum_probs=54.3
Q ss_pred EecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890 173 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 230 (246)
Q Consensus 173 ~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~ 230 (246)
...+++|||+|+||.+++|.++++|+++++|+++|++++++|+++++.|+||+.++++
T Consensus 121 ~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ik~r 178 (182)
T PRK10502 121 NTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVPIRPR 178 (182)
T ss_pred ccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceEeccc
Confidence 3467999999999999999999999999999999999999999999999999988765
No 48
>PLN02472 uncharacterized protein
Probab=99.76 E-value=1.4e-17 Score=135.75 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=69.7
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
.+.||+++.|+++|+|......+..+ ..++.||+++.|++++.+. +++|+++|+||.+++|.+++.|
T Consensus 98 ~I~IG~~t~Ig~~~vI~~~~~~~~~i------------~~~tvIG~~v~IG~~s~L~-~~~Igd~v~IG~~svI~~gavI 164 (246)
T PLN02472 98 KITVGFCSNVQERCVLHAAWNSPTGL------------PAETLIDRYVTIGAYSLLR-SCTIEPECIIGQHSILMEGSLV 164 (246)
T ss_pred ceEECCCCEECCCCEEeecCccccCC------------CCCcEECCCCEECCCcEEC-CeEEcCCCEECCCCEECCCCEE
Confidence 45666666666666665321000111 1223333333333333333 4789999999999999999999
Q ss_pred CCCCEEccCcEEe--ccCCCCCeEEccCchhhHHHHH
Q 025890 198 ASKVRLAANSCVF--KDITEPGDYGGFPAVPIHEWRR 232 (246)
Q Consensus 198 g~~~~v~~~s~v~--~~~~~~~~~~g~p~~~~~~~~~ 232 (246)
+++++|++++++. +++|+++++.|+||+.++.|.+
T Consensus 165 g~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~ 201 (246)
T PLN02472 165 ETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN 201 (246)
T ss_pred CCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence 9999999999998 6799999999999999877754
No 49
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.76 E-value=4.2e-17 Score=145.87 Aligned_cols=158 Identities=22% Similarity=0.387 Sum_probs=131.0
Q ss_pred cEEcCCc-EECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceee
Q 025890 34 VLIEVGA-IVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLK 112 (246)
Q Consensus 34 ~~I~~~a-~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~ 112 (246)
..+++.+ .|++++.|++++.|+++|.|+++++||++|.|++++.|.++.||++|.|++++.+.
T Consensus 256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~---------------- 319 (459)
T PRK14355 256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLE---------------- 319 (459)
T ss_pred EEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEe----------------
Confidence 3566654 68888888899999999999999999999999999999999999999999999996
Q ss_pred cCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEEC
Q 025890 113 KPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVR 192 (246)
Q Consensus 113 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~ 192 (246)
+++|++++.|++++++.. ++.+++++.++.++.+ +++.||+++.+...+.+ +++.||++|.||.++++.
T Consensus 320 -----~~~i~~~~~ig~~~~i~~----~~~i~~~~~ig~~~~~-~~~~ig~~~~~~~~~~i-g~~~ig~~~~ig~~~~~~ 388 (459)
T PRK14355 320 -----DSVVGDDVAIGPMAHLRP----GTELSAHVKIGNFVET-KKIVMGEGSKASHLTYL-GDATIGRNVNIGCGTITC 388 (459)
T ss_pred -----CCEECCCCEECCCCEECC----CCEeCCCCEECCCccc-cCCEECCCceeeeeccc-cCCEECCCCEEccceeec
Confidence 889999999999999985 4889999999998877 68888888888777666 468999999999987663
Q ss_pred -------CCcEECCCCEEccCcEEecc--CCCCCe
Q 025890 193 -------DHVSIASKVRLAANSCVFKD--ITEPGD 218 (246)
Q Consensus 193 -------~~~~ig~~~~v~~~s~v~~~--~~~~~~ 218 (246)
.++.||+++.+++++.+... +.+++.
T Consensus 389 ~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~ 423 (459)
T PRK14355 389 NYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSL 423 (459)
T ss_pred CcCCccccCcEecCCeEEcCCCEEeCCcEECCCCE
Confidence 35778888888888877643 344443
No 50
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.76 E-value=4.4e-17 Score=146.55 Aligned_cols=164 Identities=21% Similarity=0.352 Sum_probs=107.7
Q ss_pred ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEE----CCceEE-eccEECCCcEECCCeEEC
Q 025890 22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNI----GFNVAL-SNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I----~~~~~I-~~~~Ig~~~~I~~~~~i~ 96 (246)
..+++++.|++++.|++++.|.++++|+++++|+++|.|. +++|++++.| -++++| .++.||+++.+.+++.|+
T Consensus 266 ~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg 344 (482)
T PRK14352 266 TWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLG 344 (482)
T ss_pred EEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEc
Confidence 4567777777777777777777777777777777777764 4555555444 224444 344444444444444444
Q ss_pred CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEEcc
Q 025890 97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCG 169 (246)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i~~ 169 (246)
.+.... .+ .....+.|++++.++..+.+. ++.||+++.++.++.+. .++.||++++++.
T Consensus 345 ~~~~ig------~~---~~~~~~~I~~~~~i~~~~~i~-----~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~ 410 (482)
T PRK14352 345 EEGKLG------AF---VETKNATIGRGTKVPHLTYVG-----DADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGS 410 (482)
T ss_pred CCCEEC------Cc---EEEcccEECCCcEEccCceec-----ccEECCCcEECCCcEEeccccccCCCCeECCCcEECC
Confidence 311000 00 000156666666666665553 57888888888887764 4589999999999
Q ss_pred ceeEecceEECCCeEECcCcEECCCcEECCCCE
Q 025890 170 QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR 202 (246)
Q Consensus 170 ~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ 202 (246)
++.+.++++||++++|++++++.+++ .++++
T Consensus 411 ~~~i~~~~~Ig~~~~igags~v~~~v--~~~~~ 441 (482)
T PRK14352 411 DTMFVAPVTVGDGAYTGAGTVIREDV--PPGAL 441 (482)
T ss_pred CCEEeCCCEECCCcEECCCCEEcCCC--CCCcE
Confidence 99999999999999999999999885 45553
No 51
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.76 E-value=2.2e-17 Score=125.52 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=57.8
Q ss_pred CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890 140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE 215 (246)
Q Consensus 140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~ 215 (246)
++.||+++.++.++.+ |+|+|+++|+|+.++.+.++++||++|.||++++|.++.+++++..+ +..+.+.+.+.+
T Consensus 72 p~~IG~~vtIGH~aiv-HGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~ 147 (176)
T COG0663 72 PVTIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDD 147 (176)
T ss_pred CeEECCCcEEcCccEE-EEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCCh
Confidence 3444444444444455 66888999999999999999999999999999999999999998844 666666666654
No 52
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.76 E-value=1.7e-17 Score=128.18 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=95.1
Q ss_pred ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890 66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 144 (246)
Q Consensus 66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig 144 (246)
|++++.|.+.+.| .++.||++|.|++++.|..+. ..+.||+++.|+++++|........
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~-----------------~~i~IG~~~~I~~~~~I~~~~~~~~--- 61 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEA-----------------GPIIIGENNIIEEQVTIVNKKPKDP--- 61 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCC-----------------CCeEECCCCEECCCcEEecCCCCCC---
Confidence 3455555555555 578888888888888885321 1678888888888887764311000
Q ss_pred CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEEcc
Q 025890 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGF 222 (246)
Q Consensus 145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~g~ 222 (246)
..+.++.||+++.+..++.+.. ++|||+|+||.++.+.+++.|+++++|++++++.++ +|+++++.|+
T Consensus 62 ---------~~~~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~ 131 (164)
T cd04646 62 ---------AEPKPMIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGA 131 (164)
T ss_pred ---------CCCCCeEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCC
Confidence 1223455555555555555555 999999999999999999999999999999999998 9999999998
Q ss_pred Cc
Q 025890 223 PA 224 (246)
Q Consensus 223 p~ 224 (246)
|+
T Consensus 132 ~~ 133 (164)
T cd04646 132 DC 133 (164)
T ss_pred ce
Confidence 75
No 53
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.75 E-value=1.6e-16 Score=123.16 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=56.9
Q ss_pred eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe
Q 025890 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 218 (246)
Q Consensus 141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~ 218 (246)
+.+|+++.++.++.+..++.||++|+++.++.+. +++||++|+|+.++.+. ++.|++++.+++++++.++.++..+
T Consensus 65 v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~ 140 (167)
T cd00710 65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADAL 140 (167)
T ss_pred EEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCccccc
Confidence 4455555555555555666777777777776665 58999999999999994 6899999999999999888776443
No 54
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.75 E-value=2.2e-17 Score=130.15 Aligned_cols=130 Identities=16% Similarity=0.198 Sum_probs=93.7
Q ss_pred ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890 66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 144 (246)
Q Consensus 66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig 144 (246)
|++++.|.+.+.| .++.||++|.|+++|.|..+ .+.++||+++.|+++|+|....
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd-----------------~g~i~Ig~~t~Ig~~~~I~~~~------- 66 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGD-----------------FGRIVLKEGANIQDNCVMHGFP------- 66 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEcc-----------------CCceEECCCCEECCCeEEeccC-------
Confidence 4555666666655 67889999999999888632 1267888888888888775321
Q ss_pred CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEcc
Q 025890 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGF 222 (246)
Q Consensus 145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~ 222 (246)
..++.|++++.|++++.+. ++.|+++|+||.++++.+++.|++++.|++++++.+ ++|+++++.|+
T Consensus 67 -----------~~~siIg~~~~Ig~~a~I~-~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~ 134 (192)
T TIGR02287 67 -----------GQDTVVEENGHVGHGAILH-GCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGS 134 (192)
T ss_pred -----------CCCCeECCCCEECCCCEEc-CCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEcc
Confidence 1233333333333333333 378888888888888888899999999999998887 67899999999
Q ss_pred CchhhHHHH
Q 025890 223 PAVPIHEWR 231 (246)
Q Consensus 223 p~~~~~~~~ 231 (246)
|+|.++.+.
T Consensus 135 Pak~i~~~~ 143 (192)
T TIGR02287 135 PAKVIRELS 143 (192)
T ss_pred CCEEeccCC
Confidence 999887653
No 55
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.75 E-value=7.6e-17 Score=144.14 Aligned_cols=154 Identities=21% Similarity=0.299 Sum_probs=101.5
Q ss_pred CceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCc-----EECCCCEECCceEE-eccEECCCcEECCCeE
Q 025890 21 GGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAV-----TIGQSTNIGFNVAL-SNCIIGDSCIIHNGVC 94 (246)
Q Consensus 21 ~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~-----~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~ 94 (246)
+..+++++.|.+++.|++++.|++++.|. ++.|+++|.|++++ +|++++.|++++.| .++.+++++.|++++.
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~ 349 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVE 349 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecccee
Confidence 34455555555555555555555555542 34445555554444 34455666666655 3566666666666666
Q ss_pred ECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEE
Q 025890 95 IGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCML 167 (246)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i 167 (246)
|. .+.|++++.++..+.+. ++.||+++.++.++.+. ..+.||+++++
T Consensus 350 i~---------------------~~~i~~~~~~~~~~~~g-----~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 403 (456)
T PRK09451 350 MK---------------------KARLGKGSKAGHLTYLG-----DAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFV 403 (456)
T ss_pred ee---------------------ceeeCCCCccCcccccc-----ccEECCCCEEcCCeEEecccCcccCCCEECCCcEE
Confidence 54 67777777777665553 47888888888877663 25789999999
Q ss_pred ccceeEecceEECCCeEECcCcEECCCcEECCCCEE
Q 025890 168 CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203 (246)
Q Consensus 168 ~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v 203 (246)
+.++.+..+++|+++++|+++++|.+++ ++++++
T Consensus 404 g~~~~i~~~~~ig~~~~i~~gs~v~~~v--~~~~~~ 437 (456)
T PRK09451 404 GSDTQLVAPVTVGKGATIGAGTTVTRDV--AENELV 437 (456)
T ss_pred CCCCEEeCCcEECCCCEECCCCEEcccc--CCCCEE
Confidence 9999999999999999999999998874 455544
No 56
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=6.1e-17 Score=144.46 Aligned_cols=167 Identities=13% Similarity=0.191 Sum_probs=102.6
Q ss_pred ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECC----ceEE-eccEECCCcEECCCeEEC
Q 025890 22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGF----NVAL-SNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~----~~~I-~~~~Ig~~~~I~~~~~i~ 96 (246)
+.+++++.|++++.|++++.|++++.||+++.|+++|.|. +++|+++|.|.. +++| .++.|++++.|..++.|+
T Consensus 250 ~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig 328 (448)
T PRK14357 250 TYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLK 328 (448)
T ss_pred EEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCccccc
Confidence 4677777777777777777777777777777777777664 355555555432 3333 333333333333333333
Q ss_pred CCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEEcc
Q 025890 97 QDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCG 169 (246)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i~~ 169 (246)
..... ++ .....++.||+++.+...+.+. ++.||+++.++.++.+. +.+.||+++++++
T Consensus 329 ~~~~I----g~-----~~~i~~~~ig~~~~~~~~~~~~-----~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~ 394 (448)
T PRK14357 329 KSVKI----GN-----FVEIKKSTIGENTKAQHLTYLG-----DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGS 394 (448)
T ss_pred CCcEe----cC-----ceeeeccEEcCCcCcccccccc-----CcEECCCcEECCCcccccccccccCCcEECCCCEECC
Confidence 20000 00 0000144555555555544443 46777888887776653 4688899999999
Q ss_pred ceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890 170 QVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 205 (246)
Q Consensus 170 ~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~ 205 (246)
++.+..+++||++++|+++++|.++ +.+++++..
T Consensus 395 ~~~i~~gv~Ig~~~~i~ag~~v~~~--v~~~~~~~g 428 (448)
T PRK14357 395 NSSLVAPVRIGKGALIGAGSVITED--VPPYSLALG 428 (448)
T ss_pred CCEEeCCcEECCCCEEcCCCEECCc--CCCCcEEEc
Confidence 9988888999999999999999887 445555544
No 57
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.74 E-value=5.9e-17 Score=132.01 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=54.5
Q ss_pred cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE-c-cCch
Q 025890 157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-G-FPAV 225 (246)
Q Consensus 157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~-g-~p~~ 225 (246)
+++.||++|+|+.++.+.++++|+++|.||++++|.++++|.+.. +++++.+++|+++.+. | .|.+
T Consensus 172 ~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~~vp~~svv~~g~~p~~ 239 (269)
T TIGR00965 172 NPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYGRVPAGSVVVSGNLPSK 239 (269)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc---CCceeeeecCCCcEEecCCeecC
Confidence 667777777777777778888999999999999999999999977 8888899999999775 4 6743
No 58
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=1.1e-16 Score=141.98 Aligned_cols=146 Identities=20% Similarity=0.231 Sum_probs=100.2
Q ss_pred ceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECC----CcEECCCCEECCceEEeccEECCCcEECCCeEECC
Q 025890 22 GIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP----AVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 97 (246)
Q Consensus 22 ~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~----~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~ 97 (246)
..+++++.+.+++.|++++.|++++.|+ ++.|+++|.|++ +++|++++.|++++.|. ++.|++++.++
T Consensus 254 ~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~------~~~ig~~~~i~- 325 (430)
T PRK14359 254 IYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIK------NTHIGNFVETK- 325 (430)
T ss_pred eEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEe------ccEEcCcEEEc-
Confidence 3456677777777778888888777776 777788887765 33444444444444444 45555555554
Q ss_pred CCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEc-------cCcEECCCcEEccc
Q 025890 98 DGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIG-------HNVAIGKSCMLCGQ 170 (246)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~-------~~~~Ig~~~~i~~~ 170 (246)
++++ +++.+++.+.+. ++.||+++.++.++.+. ..+.||++++++.+
T Consensus 326 --------------------~~~~-~~~~i~~~~~i~-----d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~ 379 (430)
T PRK14359 326 --------------------NAKL-NGVKAGHLSYLG-----DCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSD 379 (430)
T ss_pred --------------------ccEe-cccccccccccc-----CCEECCCCEECCCceEccccCccCcCCEECCCeEEcCC
Confidence 3333 455555555553 35666666666666553 35899999999999
Q ss_pred eeEecceEECCCeEECcCcEECCCcEECCCCEE
Q 025890 171 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203 (246)
Q Consensus 171 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v 203 (246)
+.+..+++||++++|+++++|.+++ .+++.+
T Consensus 380 ~~i~~~~~ig~~~~i~~g~~v~~~v--~~~~~~ 410 (430)
T PRK14359 380 TQLVAPVNIEDNVLIAAGSTVTKDV--PKGSLA 410 (430)
T ss_pred CEEeCCcEECCCCEECCCCEEcccc--CCCcEE
Confidence 9999999999999999999999884 455544
No 59
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=1.7e-16 Score=141.85 Aligned_cols=182 Identities=14% Similarity=0.203 Sum_probs=136.5
Q ss_pred EEeechhhhhhhcccCCCceeccCcEECCCcEEc--CCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEecc
Q 025890 4 YVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIE--VGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 81 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~--~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~ 81 (246)
+|.++.+++.+.+.......--....+.+++.|. +++++++++.|++++.|..+|.|++++.||++|.|+++|.|.++
T Consensus 226 ~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~ 305 (456)
T PRK14356 226 NLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDA 305 (456)
T ss_pred eEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEee
Confidence 4567777776654433111000011222333332 34566666777777777777888888899999999999999999
Q ss_pred EECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEE
Q 025890 82 IIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI 161 (246)
Q Consensus 82 ~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~I 161 (246)
+|+++|.|++++.|. +++||+++.|+++++|.+ ++.+++++.+++++.+ .++.|
T Consensus 306 ~i~~~~~I~~~~~i~---------------------~~~ig~~~~Ig~~~~i~~----~~~ig~~~~ig~~~~i-~~~~i 359 (456)
T PRK14356 306 VVSSGATIHSFSHLE---------------------GAEVGDGCSVGPYARLRP----GAVLEEGARVGNFVEM-KKAVL 359 (456)
T ss_pred EECCCCEEeeeEEEc---------------------ccceecccEECCceEECC----CCEECCCCEecCCcee-eeeEe
Confidence 999999999999996 899999999999999984 4789999999999888 66889
Q ss_pred CCCcEEccceeEecceEECCCeEECcCcEEC-------CCcEECCCCEEccCcEEecc
Q 025890 162 GKSCMLCGQVGIAGSATIGDYVTLGGRVAVR-------DHVSIASKVRLAANSCVFKD 212 (246)
Q Consensus 162 g~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~-------~~~~ig~~~~v~~~s~v~~~ 212 (246)
++++.+.+...+. ++.||+++.|+.++++. .++.|++++.+++++.+...
T Consensus 360 ~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~ 416 (456)
T PRK14356 360 GKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP 416 (456)
T ss_pred cCCcEeccccccc-CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC
Confidence 9998888887765 58999999999987652 35788888888888877653
No 60
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=2e-16 Score=141.48 Aligned_cols=151 Identities=24% Similarity=0.432 Sum_probs=126.2
Q ss_pred cEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccce
Q 025890 40 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA 119 (246)
Q Consensus 40 a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 119 (246)
+.|++++.|++++.|++++.|.+++.||++|.|++++.|.++.|+++|.|++ +.+. ++
T Consensus 260 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~---------------------~~ 317 (458)
T PRK14354 260 TYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIE---------------------ES 317 (458)
T ss_pred EEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEE-EEEe---------------------CC
Confidence 4677777888888888888888888999999999999999999999999985 4443 78
Q ss_pred EECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECC------
Q 025890 120 RIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRD------ 193 (246)
Q Consensus 120 ~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~------ 193 (246)
.||+++.|++++.|.. ++.||+++.++.++.+ +++.|++++.+...+.+ ++++||++|.|+.++.+..
T Consensus 318 ~ig~~~~Ig~~~~i~~----~~~Ig~~~~i~~~~~i-~~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~~~~~~~~ 391 (458)
T PRK14354 318 KVGDNVTVGPFAHLRP----GSVIGEEVKIGNFVEI-KKSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITVNYDGKNK 391 (458)
T ss_pred EECCCcEECCceEecC----CCEEeCCcEECCceEE-eeeEECCCCEecceeee-cCcccCCceEEcCceeecccccccc
Confidence 9999999999999984 4889999999999998 57889999998888776 5589999999999988753
Q ss_pred -CcEECCCCEEccCcEEecc--CCCCCe
Q 025890 194 -HVSIASKVRLAANSCVFKD--ITEPGD 218 (246)
Q Consensus 194 -~~~ig~~~~v~~~s~v~~~--~~~~~~ 218 (246)
++.|++++++++++.+... +.++++
T Consensus 392 ~~~~igd~~~ig~~s~i~~~~~ig~~~~ 419 (458)
T PRK14354 392 FKTIIGDNAFIGCNSNLVAPVTVGDNAY 419 (458)
T ss_pred cCCEECCCcEEccCCEEeCCcEECCCCE
Confidence 6889999999999988754 344443
No 61
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.73 E-value=1.6e-16 Score=126.49 Aligned_cols=103 Identities=30% Similarity=0.435 Sum_probs=91.0
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
++.||+++.|+++++|.. ++.|++++.++.++.+++++.|+++++++.++.+.++++|+++|+|+.++.+.+++.|
T Consensus 99 ~~~ig~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i 174 (201)
T TIGR03570 99 SASIGEGTVIMAGAVINP----DVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTI 174 (201)
T ss_pred CCEECCCCEECCCCEECC----CCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEE
Confidence 556666666666666663 4778888888888888888999999999999999999999999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCc
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPA 224 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~ 224 (246)
+++++|++++++.+++|+++++.|+||
T Consensus 175 ~~~~~i~~~~~v~~~~~~~~~~~g~pa 201 (201)
T TIGR03570 175 GAGAIVGAGAVVTKDIPDGGVVVGVPA 201 (201)
T ss_pred CCCCEECCCCEECCcCCCCCEEEeccC
Confidence 999999999999999999999999997
No 62
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.73 E-value=2.3e-16 Score=140.87 Aligned_cols=112 Identities=22% Similarity=0.343 Sum_probs=78.1
Q ss_pred cEECCCCEECCceEEe-ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeE
Q 025890 64 VTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTV 142 (246)
Q Consensus 64 ~~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ 142 (246)
++|++++.|++++.|. ++.|+++|.|++++.+. ++.|++++.+..++.+. ++.
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~---------------------~~~i~~~~~i~~~~~~~-----~~~ 367 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK---------------------KSQLGEGSKVNHLSYIG-----DAT 367 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEe---------------------ccccCCCcEeccceecC-----Cce
Confidence 4456666666666663 56777777777777664 56677777776665543 466
Q ss_pred ECCCCEECCCCEEc-------cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE
Q 025890 143 IGDHSKIDNLVQIG-------HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL 203 (246)
Q Consensus 143 ig~~~~v~~~~~i~-------~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v 203 (246)
|+++|.++.++.+. ..++||++++++.++.+..+++||+++.|+++++|.++ |++++++
T Consensus 368 i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~--~~~~~~~ 433 (450)
T PRK14360 368 LGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKD--VPDNSLA 433 (450)
T ss_pred ecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECcc--CCCCCEE
Confidence 77777777776652 36788888888888888888888888888888888775 4555544
No 63
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.72 E-value=6.8e-17 Score=118.25 Aligned_cols=103 Identities=22% Similarity=0.223 Sum_probs=71.5
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
++.||+++.|++++.+.. ++.|++++.++.++.+.. ..+.... +.... ...+++|+++|+|+.++.+.+++.|
T Consensus 16 ~~~Ig~~~~I~~~~~i~~----~~~Ig~~~~I~~~~~i~~-~~~~~~~-~~~~~-~~~~~~Ig~~~~Ig~~~~v~~~~~i 88 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYE----GVTIEDDVFIGPNVVFTN-DLYPRSK-IYRKW-ELKGTTVKRGASIGANATILPGVTI 88 (119)
T ss_pred CcEECCCcEECCCcEEeC----CeEECCCcEEcCCeEEec-CCCCccc-ccccc-ccCCcEECCCcEECcCCEEeCCcEE
Confidence 466666666666665542 345555555544444422 1111111 11111 1356899999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPI 227 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~ 227 (246)
++++.|++++++++++|+++++.|+|||.+
T Consensus 89 g~~~~i~~~~~v~~~i~~~~~~~G~pa~~~ 118 (119)
T cd03358 89 GEYALVGAGAVVTKDVPPYALVVGNPARII 118 (119)
T ss_pred CCCCEEccCCEEeCcCCCCeEEecCcceec
Confidence 999999999999999999999999999875
No 64
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.72 E-value=6.2e-17 Score=128.17 Aligned_cols=135 Identities=23% Similarity=0.222 Sum_probs=104.8
Q ss_pred eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890 79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN 158 (246)
Q Consensus 79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~ 158 (246)
.+..+|+++.++.++.+... ......||+++.|++++.|... .++.||+++.++.++.+..+
T Consensus 42 ~~I~iG~~v~i~~~~ri~~~----------------~~~~i~IG~~v~Ig~~v~I~~~--~~v~IG~~v~Ig~~v~I~~~ 103 (192)
T PRK09677 42 GSINFGEGFTSGVGLRLDAF----------------GRGKLFFGDNVQVNDYVHIACI--ESITIGRDTLIASKVFITDH 103 (192)
T ss_pred CeEEECCceEECCCeEEEec----------------CCCeEEECCCCEECCCcEEccC--ceEEECCCCEECCCeEEECC
Confidence 56778888888888888431 1127899999999999998854 46788888888888877543
Q ss_pred cEECC----CcE----E--ccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890 159 VAIGK----SCM----L--CGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIH 228 (246)
Q Consensus 159 ~~Ig~----~~~----i--~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~ 228 (246)
.. +. ..+ + .......++++||++|+||.++.+.++++|+++++|+++|+|++++|+++++.|+||+.++
T Consensus 104 ~h-g~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik 182 (192)
T PRK09677 104 NH-GSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIK 182 (192)
T ss_pred CC-ccccccccccccccChhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEe
Confidence 21 10 000 1 0111224569999999999999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 025890 229 EWRR 232 (246)
Q Consensus 229 ~~~~ 232 (246)
.+..
T Consensus 183 ~~~~ 186 (192)
T PRK09677 183 KYNH 186 (192)
T ss_pred ccCc
Confidence 8765
No 65
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.72 E-value=8.2e-17 Score=126.07 Aligned_cols=58 Identities=33% Similarity=0.489 Sum_probs=53.9
Q ss_pred eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHH
Q 025890 172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHE 229 (246)
Q Consensus 172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~ 229 (246)
.+.+++.||++||||++++|.+++.||++++|+++|+|++|+|+++++.|+||+.++.
T Consensus 125 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i~~G~PAr~i~~ 182 (183)
T PRK10092 125 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK 182 (183)
T ss_pred eecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccccCCCcEEEecCcEEeec
Confidence 3456799999999999999999999999999999999999999999999999998764
No 66
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.72 E-value=9.8e-17 Score=124.63 Aligned_cols=56 Identities=38% Similarity=0.395 Sum_probs=52.1
Q ss_pred eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890 172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227 (246)
Q Consensus 172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~ 227 (246)
....+++||++|+||.+++|.++++||++++|+++|+|++++|+++++.|+|||.+
T Consensus 114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~vp~~~vv~G~PAkvi 169 (169)
T cd03357 114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARVI 169 (169)
T ss_pred eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccccCCCcEEEccccEEC
Confidence 34567999999999999999999999999999999999999999999999999853
No 67
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.72 E-value=1.5e-16 Score=130.75 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=54.1
Q ss_pred CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE-c-----------cCch
Q 025890 158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG-G-----------FPAV 225 (246)
Q Consensus 158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~-g-----------~p~~ 225 (246)
++.|+++|+|+.++.+..+++||++|.|+++++|.+++.|++.+ +++++.+++|+++.+. | .||+
T Consensus 176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~---~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~~~ 252 (272)
T PRK11830 176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE---TGEVHYGRVPAGSVVVPGSLPSKDGGYSLYCAV 252 (272)
T ss_pred CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC---CCcEEeeecCCCcEEecCcccccCCCcCCcCcE
Confidence 45666666666666667778888888888888888888888873 7788888899988765 6 3777
Q ss_pred hhHHHHH
Q 025890 226 PIHEWRR 232 (246)
Q Consensus 226 ~~~~~~~ 232 (246)
.++++..
T Consensus 253 i~~~~~~ 259 (272)
T PRK11830 253 IVKKVDA 259 (272)
T ss_pred EEEEccc
Confidence 7766644
No 68
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.71 E-value=9.3e-16 Score=117.30 Aligned_cols=53 Identities=30% Similarity=0.261 Sum_probs=27.1
Q ss_pred EECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHHH
Q 025890 178 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHEW 230 (246)
Q Consensus 178 ~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~~ 230 (246)
.|+++++|+.++.+.+++.|+++++|++++.+.+ .+|+++++.|.|++..+++
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~ 133 (153)
T cd04645 79 TIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVREL 133 (153)
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccC
Confidence 4444444444444444444444444444444443 3455666666666665555
No 69
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.71 E-value=4e-16 Score=123.38 Aligned_cols=102 Identities=29% Similarity=0.413 Sum_probs=89.1
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
.+.+++++.|+++++|.. ++.||+++.++.++.+++++.||+++.++.++.+.+++.|+++|+|+.++.+.+++.|
T Consensus 96 ~~~ig~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i 171 (197)
T cd03360 96 SAVIGEGCVIMAGAVINP----DARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTI 171 (197)
T ss_pred CCEECCCCEEcCCCEECC----CCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEE
Confidence 455666666666666663 4677788888888888888999999999999999999999999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccC
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFP 223 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p 223 (246)
++++.|+++|++.+++|+++++.|+|
T Consensus 172 g~~~~v~~~~~v~~~~~~~~~~~g~p 197 (197)
T cd03360 172 GAGAIIGAGAVVTKDVPDGSVVVGNP 197 (197)
T ss_pred CCCCEECCCCEEcCCCCCCCEEEecC
Confidence 99999999999999999999999998
No 70
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.71 E-value=3.6e-16 Score=120.49 Aligned_cols=64 Identities=23% Similarity=0.291 Sum_probs=40.2
Q ss_pred EECCCeEECcCcEECCCcEECCCCEEccCcEEecc--CCCCCeEEccCchhhHHHHHHhhhhhhcc
Q 025890 178 TIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKD--ITEPGDYGGFPAVPIHEWRRQVANQIRSS 241 (246)
Q Consensus 178 ~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~--~~~~~~~~g~p~~~~~~~~~~~~~~~~~~ 241 (246)
.|+++++|+.++.+..++.|++++.|++++++..+ +|+++++.|+|++.++.+.+..+.+.+..
T Consensus 91 ~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~~~~~ 156 (161)
T cd03359 91 QIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQELMEEE 156 (161)
T ss_pred EEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHHHHhh
Confidence 34444444444444444444445555555544443 68899999999999998887777766554
No 71
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.70 E-value=4.6e-16 Score=118.96 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=94.0
Q ss_pred ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890 66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 144 (246)
Q Consensus 66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig 144 (246)
+.+++.|.+.+.| .++.||++|.|++++.|..+. ..+.||+++.|+++|.|.....
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~-----------------~~i~Ig~~~~Ig~~~~I~~~~~------ 59 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDN-----------------DSIYIGKYSNVQENVSIHTDHG------ 59 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCC-----------------CcEEECCCCEECCCCEEEeCCC------
Confidence 3455556666656 678888888888888886421 1468888888888887764211
Q ss_pred CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEcc
Q 025890 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGF 222 (246)
Q Consensus 145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~ 222 (246)
.++.|++++.++.++.+ .++.|+++|+|+.++.+.+++.|++++++++++.+.+ +++++.++.|+
T Consensus 60 ------------~~~~Ig~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~ 126 (154)
T cd04650 60 ------------YPTEIGDYVTIGHNAVV-HGAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGV 126 (154)
T ss_pred ------------CCeEECCCCEECCCcEE-ECcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEecc
Confidence 12333333333333333 2467888888888888888899999999999998884 78999999999
Q ss_pred CchhhHHHHH
Q 025890 223 PAVPIHEWRR 232 (246)
Q Consensus 223 p~~~~~~~~~ 232 (246)
|++.++.+..
T Consensus 127 pa~~~~~~~~ 136 (154)
T cd04650 127 PAKVVRKLTE 136 (154)
T ss_pred CceEeccCCH
Confidence 9999887765
No 72
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.70 E-value=1.4e-15 Score=116.57 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=42.2
Q ss_pred CcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc-cCcEEeccCCC
Q 025890 158 NVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITE 215 (246)
Q Consensus 158 ~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~~~ 215 (246)
++.||++++++.++.+..+++|+++|+|++++++.+++.|++++++. ..+.+.+.+++
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~ 136 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSD 136 (155)
T ss_pred CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCH
Confidence 35556666666666666778899999999999999999999998764 34555555443
No 73
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.70 E-value=9.5e-16 Score=142.42 Aligned_cols=86 Identities=29% Similarity=0.322 Sum_probs=70.0
Q ss_pred cCeEECCCCEECCCCEEccC-cEECCCcEEccceeE-----------ecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890 139 RDTVIGDHSKIDNLVQIGHN-VAIGKSCMLCGQVGI-----------AGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 206 (246)
Q Consensus 139 ~~~~ig~~~~v~~~~~i~~~-~~Ig~~~~i~~~~~~-----------~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~ 206 (246)
.+++||+++.++.....+++ +.||++|.|+.++.+ .++++||++|+||.++++.+++.||+++.|+++
T Consensus 596 lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~ 675 (695)
T TIGR02353 596 LGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPD 675 (695)
T ss_pred CCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence 45778888888776444333 355555555555554 457999999999999999999999999999999
Q ss_pred cEEec--cCCCCCeEEccCc
Q 025890 207 SCVFK--DITEPGDYGGFPA 224 (246)
Q Consensus 207 s~v~~--~~~~~~~~~g~p~ 224 (246)
|++.+ ++|+++.+.|+|+
T Consensus 676 SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 676 SLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred CEEcCCcccCCCCEEEeccC
Confidence 99998 7999999999996
No 74
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.69 E-value=1.2e-15 Score=124.30 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=51.4
Q ss_pred cCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCe
Q 025890 139 RDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGD 218 (246)
Q Consensus 139 ~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~ 218 (246)
+++.|+++|+++.++.|.+++.||++++|+.++.+..+++|.+.. .+..+.+ .|+++++|.||+...++ .++++
T Consensus 172 ~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~--~vp~~svv~~g~~p~~~-g~~~~ 245 (269)
T TIGR00965 172 NPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYG--RVPAGSVVVSGNLPSKD-GKYSL 245 (269)
T ss_pred CCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc---CCceeee--ecCCCcEEecCCeecCC-Ccccc
Confidence 345555556666666666666666666666666556666666644 3333322 37788888888777654 23333
Q ss_pred EEccCchhhHHHHHHhhhhhhc
Q 025890 219 YGGFPAVPIHEWRRQVANQIRS 240 (246)
Q Consensus 219 ~~g~p~~~~~~~~~~~~~~~~~ 240 (246)
..-.-.|..+...+.+..++.+
T Consensus 246 ~~a~ivk~~d~~t~~k~~~~~~ 267 (269)
T TIGR00965 246 YCAVIVKKVDAKTRGKVSINEL 267 (269)
T ss_pred ceeEEEEEechhhhhhhhhHHh
Confidence 3222223333444444444433
No 75
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.69 E-value=3e-15 Score=114.47 Aligned_cols=96 Identities=25% Similarity=0.335 Sum_probs=63.3
Q ss_pred cEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcE
Q 025890 81 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA 160 (246)
Q Consensus 81 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~ 160 (246)
++||++|.|+++|.|..+. ..++.||+++.|+.++.+. ++.
T Consensus 40 i~Ig~~~~Ig~~~~I~~~~----------------~~~~~Ig~~~~I~~~~~i~-----------------------~~~ 80 (154)
T cd04650 40 IYIGKYSNVQENVSIHTDH----------------GYPTEIGDYVTIGHNAVVH-----------------------GAK 80 (154)
T ss_pred EEECCCCEECCCCEEEeCC----------------CCCeEECCCCEECCCcEEE-----------------------CcE
Confidence 3555666666666664210 0146677777777666553 234
Q ss_pred ECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCE-EccCcEEeccCCC
Q 025890 161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVR-LAANSCVFKDITE 215 (246)
Q Consensus 161 Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~-v~~~s~v~~~~~~ 215 (246)
|+++++++.++.+..+++|++++++++++.+.++..++++++ .+..+.+.+++++
T Consensus 81 Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~ 136 (154)
T cd04650 81 VGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTE 136 (154)
T ss_pred ECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCH
Confidence 444445555555566788999999999999999999999998 5666777666654
No 76
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.69 E-value=5.8e-16 Score=111.22 Aligned_cols=55 Identities=31% Similarity=0.370 Sum_probs=51.9
Q ss_pred eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchh
Q 025890 172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVP 226 (246)
Q Consensus 172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~ 226 (246)
...++++||++|+|+.++.+.++++|+++++|+++|++++++|+++++.|+||+.
T Consensus 52 ~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa~~ 106 (107)
T cd05825 52 LITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRDLPAWTVYAGNPAVP 106 (107)
T ss_pred eecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCcCCCCCEEECCccEe
Confidence 4457799999999999999999999999999999999999999999999999985
No 77
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.68 E-value=3.7e-15 Score=115.17 Aligned_cols=145 Identities=21% Similarity=0.337 Sum_probs=92.7
Q ss_pred cCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe-ccEECCCcEECCCeEECCCCceeEEcCCCceeecCc
Q 025890 37 EVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS-NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ 115 (246)
Q Consensus 37 ~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~ 115 (246)
.+++.+.++++|+++++|++++.|.+++.|+++|.|++++.|. ++.|+++|.|++++.|.
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~------------------- 69 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK------------------- 69 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe-------------------
Confidence 4445555556666666666666666667777777777777774 58888999999999886
Q ss_pred ccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEEC---CCeEECcCcEEC
Q 025890 116 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIG---DYVTLGGRVAVR 192 (246)
Q Consensus 116 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig---~~~~Ig~~~~v~ 192 (246)
++.|++++.+++++.+. ++.+++++.+++++.+. +..+++.. +... ........+ .++.|+.++.+.
T Consensus 70 --~siig~~~~I~~~~~i~-----~siIg~~~~I~~~~~i~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~iIg~~~~ig 139 (163)
T cd05636 70 --NSIIMDGTKVPHLNYVG-----DSVLGENVNLGAGTITA-NLRFDDKP-VKVR-LKGERVDTGRRKLGAIIGDGVKTG 139 (163)
T ss_pred --eeEecCCCEeccCCEEe-----cCEECCCCEECCCcEEc-ccCcCCcc-eEEE-ecCcceecCCcccCcEEcCCeEEC
Confidence 78899999998888775 35667766666666652 22222211 0000 001111222 257777777777
Q ss_pred CCcEECCCCEEccCcEEe
Q 025890 193 DHVSIASKVRLAANSCVF 210 (246)
Q Consensus 193 ~~~~ig~~~~v~~~s~v~ 210 (246)
.++.|.+++.|++++++.
T Consensus 140 ~~~~i~~g~~ig~~~~i~ 157 (163)
T cd05636 140 INVSLNPGVKIGPGSWVY 157 (163)
T ss_pred CCcEECCCcEECCCCEEC
Confidence 777777777777777763
No 78
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.68 E-value=3.8e-15 Score=112.04 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=73.8
Q ss_pred eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890 23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF 102 (246)
Q Consensus 23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~ 102 (246)
.+++.+++++++.|++++.|.+++++..+++|+++++|.+++.|+++ +.|+++|.|++++.++...
T Consensus 3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~-----------~~IG~~~~I~~~~~igg~~--- 68 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSC-----------AQIGKNVHLSAGAVIGGVL--- 68 (139)
T ss_pred ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCC-----------CEECCCCEECCCCEECCcc---
Confidence 34555555555555555555555555555555554444444444333 3344555555555554210
Q ss_pred EEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCC
Q 025890 103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDY 182 (246)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~ 182 (246)
......++.|++++.++.++.+.+++.|++++.++.++.+.++++|+++
T Consensus 69 -------------------------------~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 69 -------------------------------EPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred -------------------------------cccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence 0001134556666666666666677777777888888888888888888
Q ss_pred eEECcCcEECCCcE
Q 025890 183 VTLGGRVAVRDHVS 196 (246)
Q Consensus 183 ~~Ig~~~~v~~~~~ 196 (246)
++++++.+++.
T Consensus 118 ---~~~~~v~~~~~ 128 (139)
T cd03350 118 ---ETGEIYYGRVP 128 (139)
T ss_pred ---CcccEEecccC
Confidence 99999988854
No 79
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.67 E-value=2.9e-15 Score=116.19 Aligned_cols=140 Identities=22% Similarity=0.228 Sum_probs=91.1
Q ss_pred ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890 66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 144 (246)
Q Consensus 66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig 144 (246)
|++++.|.+++.| .++.||++|.|++++.|..+. ...+.||+++.|++++.+...
T Consensus 5 ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~----------------~~~v~IG~~~~I~~~~~i~~~-------- 60 (167)
T cd00710 5 IDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADE----------------GTPIIIGANVNIQDGVVIHAL-------- 60 (167)
T ss_pred eCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCC----------------CCcEEECCCCEECCCeEEEec--------
Confidence 3444444444444 356666666666666664311 013455555555555544311
Q ss_pred CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec-cCCCCCe-----
Q 025890 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK-DITEPGD----- 218 (246)
Q Consensus 145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~-~~~~~~~----- 218 (246)
....+.||+++.+++++.+.++++||++|+||.++.+. ++.|++++.|+++|.+.+ .++++..
T Consensus 61 ----------~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~ 129 (167)
T cd00710 61 ----------EGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVDGVEIPPGRYVPAGA 129 (167)
T ss_pred ----------CCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEeCCEeCCCCEECCCC
Confidence 03567888888888888888899999999999999986 799999999999999874 4555443
Q ss_pred -EE-ccCchhhHHHHHHhhhhhhc
Q 025890 219 -YG-GFPAVPIHEWRRQVANQIRS 240 (246)
Q Consensus 219 -~~-g~p~~~~~~~~~~~~~~~~~ 240 (246)
+. +.|++.+..+.++.++|.+-
T Consensus 130 ~v~~~~~~~~~~~~~~~~~~~~~~ 153 (167)
T cd00710 130 VITSQTQADALPDVTDSAREFNEK 153 (167)
T ss_pred EEcCCCcccccccCChhHHHHHHH
Confidence 32 45666666666666655543
No 80
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.66 E-value=4.3e-16 Score=123.34 Aligned_cols=60 Identities=32% Similarity=0.353 Sum_probs=55.2
Q ss_pred EecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHHH
Q 025890 173 IAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRR 232 (246)
Q Consensus 173 ~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~ 232 (246)
..++++||++||||.+++|+++++||++++|+++|+|+||+|+++++.|+||+.+++...
T Consensus 121 ~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~~iv~G~Pa~vir~~~~ 180 (190)
T COG0110 121 GAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPYGIVAGNPARVIRKRDV 180 (190)
T ss_pred ecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCCeEEeCCcceEEEecch
Confidence 345799999999999999999999999999999999999999999999999998866543
No 81
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.66 E-value=3.4e-15 Score=121.15 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=33.8
Q ss_pred cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890 157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 205 (246)
Q Consensus 157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~ 205 (246)
..+.|+++++++.++.+..+++|+++++|+++++|.++ +++++++..
T Consensus 159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~d--i~~~~vv~G 205 (231)
T TIGR03532 159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED--VPPNTVVAG 205 (231)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--cCCCcEEEe
Confidence 34556666666666666777888999999999998875 667766553
No 82
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.66 E-value=3.3e-15 Score=114.26 Aligned_cols=132 Identities=21% Similarity=0.303 Sum_probs=112.0
Q ss_pred ECCCCEECCceEE-eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEEC
Q 025890 66 IGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIG 144 (246)
Q Consensus 66 ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig 144 (246)
++++++|.+++.| .++.||+++.|++++.|.... ..++||+++.|+++++|......++.|+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~-----------------~~~~IG~~~~I~~~~~I~~~~~~~~~Ig 64 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDV-----------------NPIRIGERTNIQDGSVLHVDPGYPTIIG 64 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCC-----------------CceEECCCCEECCCcEEecCCCCCeEEc
Confidence 4566667777777 689999999999999986421 2689999999999999986544568999
Q ss_pred CCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890 145 DHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE 215 (246)
Q Consensus 145 ~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~ 215 (246)
+++.++.++.+ .++.|+++++++.++.+..+++|+++|+|+.++.+.+++.+++++++ +..+.+.++++.
T Consensus 65 ~~~~I~~~~~i-~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~ 135 (153)
T cd04645 65 DNVTVGHGAVL-HGCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTD 135 (153)
T ss_pred CCcEECCCcEE-eeeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCH
Confidence 99999999999 56999999999999999999999999999999999999999999888 566666666665
No 83
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.66 E-value=4.4e-15 Score=117.13 Aligned_cols=134 Identities=15% Similarity=0.294 Sum_probs=87.2
Q ss_pred EcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCc
Q 025890 36 IEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQ 115 (246)
Q Consensus 36 I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~ 115 (246)
|++++.|++.+.|.+++.|+++|.|.++++|..+ +..++||++|.|+++|.|+...
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd--------~g~i~Ig~~t~Ig~~~~I~~~~---------------- 66 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGD--------FGRIVLKEGANIQDNCVMHGFP---------------- 66 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEcc--------CCceEECCCCEECCCeEEeccC----------------
Confidence 4555555555555555555555555555544332 1346788888888888884211
Q ss_pred ccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCc
Q 025890 116 LLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHV 195 (246)
Q Consensus 116 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~ 195 (246)
..++.|++++.|++++.+. ++.|++++.++.++.+..+++||++|.|++++.+.+++
T Consensus 67 ~~~siIg~~~~Ig~~a~I~-----------------------~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~ 123 (192)
T TIGR02287 67 GQDTVVEENGHVGHGAILH-----------------------GCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGA 123 (192)
T ss_pred CCCCeECCCCEECCCCEEc-----------------------CCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCC
Confidence 0156777777777666553 45555555555555666678899999999999999999
Q ss_pred EECCCCEEc-cCcEEeccCCCC
Q 025890 196 SIASKVRLA-ANSCVFKDITEP 216 (246)
Q Consensus 196 ~ig~~~~v~-~~s~v~~~~~~~ 216 (246)
.|++++.+. ..+.+.+.+.+.
T Consensus 124 ~ip~~~l~~G~Pak~i~~~~~~ 145 (192)
T TIGR02287 124 EMPAQYLVVGSPAKVIRELSEQ 145 (192)
T ss_pred EECCCeEEEccCCEEeccCCHH
Confidence 999988754 446666666553
No 84
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.65 E-value=9.6e-16 Score=126.10 Aligned_cols=107 Identities=21% Similarity=0.302 Sum_probs=74.6
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
.+.|+..+.||+++.|..+ .++.||+++.|++++.|.++++||....-. -..+.+||++|+||+++.|.++++|
T Consensus 141 gidI~~~a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~~~----~~~~p~IGd~V~IGaga~Ilggv~I 214 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGKTS----GDRHPKIREGVMIGAGAKILGNIEV 214 (273)
T ss_pred eeEecCcceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcccC----CCcCCEECCCcEEcCCCEEcCCCEE
Confidence 3444444444444444432 234555555555555555555555321110 0124799999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 230 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~ 230 (246)
|++++|+++|+|++|+|+++++.|+||+.++..
T Consensus 215 G~~a~IGAgSvV~~dVp~~~~v~G~PArvi~~~ 247 (273)
T PRK11132 215 GRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKP 247 (273)
T ss_pred CCCCEECCCCEECcccCCCcEEEecCcEEeCcc
Confidence 999999999999999999999999999987654
No 85
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.63 E-value=9.7e-15 Score=115.55 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=46.0
Q ss_pred cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCC
Q 025890 157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITE 215 (246)
Q Consensus 157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~ 215 (246)
+++.||++++++.++.+..+++||+++.|+++++|.+++.+++++++ +..+...+++.+
T Consensus 87 ~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~ 146 (196)
T PRK13627 87 HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSD 146 (196)
T ss_pred eeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCH
Confidence 45566666666666777778899999999999999999999888754 555777777765
No 86
>PLN02739 serine acetyltransferase
Probab=99.63 E-value=1.5e-15 Score=127.32 Aligned_cols=107 Identities=30% Similarity=0.351 Sum_probs=82.7
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
.+.|+..+.||.++.|..+ .++.||+++.|++++.|.++++||....- .-..+++||++|+||++++|.++++|
T Consensus 205 GidI~p~A~IG~Gv~IdHg--~GVVIG~~avIGdnv~I~~gVTIGg~g~~----~g~r~p~IGd~V~IGagA~IlG~V~I 278 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHG--TGVVIGETAVIGDRVSILHGVTLGGTGKE----TGDRHPKIGDGALLGACVTILGNISI 278 (355)
T ss_pred CcccCCCccccCceEEecC--CceEECCCCEECCCCEEcCCceeCCcCCc----CCCCCcEECCCCEEcCCCEEeCCeEE
Confidence 5567777777777777643 35667776666666666666666642110 00235899999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 230 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~ 230 (246)
|++++|+++|+|++|+|+++++.|+||+.++..
T Consensus 279 Gd~aiIGAGSVV~kDVP~~stvvG~PAriI~~~ 311 (355)
T PLN02739 279 GAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFV 311 (355)
T ss_pred CCCCEECCCCEECCCCCCCcEEEecCCEEeccC
Confidence 999999999999999999999999999988755
No 87
>PLN02472 uncharacterized protein
Probab=99.63 E-value=2.7e-14 Score=116.47 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=62.6
Q ss_pred cEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcE
Q 025890 81 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA 160 (246)
Q Consensus 81 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~ 160 (246)
..||+++.|+++|.|+...... ..-...++||+++.|++++.+ ++|.
T Consensus 99 I~IG~~t~Ig~~~vI~~~~~~~----------~~i~~~tvIG~~v~IG~~s~L-----------------------~~~~ 145 (246)
T PLN02472 99 ITVGFCSNVQERCVLHAAWNSP----------TGLPAETLIDRYVTIGAYSLL-----------------------RSCT 145 (246)
T ss_pred eEECCCCEECCCCEEeecCccc----------cCCCCCcEECCCCEECCCcEE-----------------------CCeE
Confidence 4677777777777775311000 000014555555555555544 3445
Q ss_pred ECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc-cCcEEeccCCC
Q 025890 161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDITE 215 (246)
Q Consensus 161 Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~~~ 215 (246)
|++++.|+.++.+..+++|+++|.|++++++.++..++++.++. ..+...+++.+
T Consensus 146 Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~ 201 (246)
T PLN02472 146 IEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN 201 (246)
T ss_pred EcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence 55555555555556678889999999999999999998888764 34555555554
No 88
>PLN02694 serine O-acetyltransferase
Probab=99.62 E-value=3.8e-15 Score=122.62 Aligned_cols=107 Identities=27% Similarity=0.362 Sum_probs=85.1
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
.+.|+..+.||+++.|..+ .++.||+++.|++++.|.+++++|.... ... ..+++||++|+||+++.|.++++|
T Consensus 160 gvdI~p~A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g~---~~~-~r~piIGd~V~IGagA~Ilggi~I 233 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTGK---ACG-DRHPKIGDGVLIGAGATILGNVKI 233 (294)
T ss_pred eEEeCCcceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCccc---ccC-CCccEECCCeEECCeeEECCCCEE
Confidence 5667777777777777653 3577777777777777777777765311 111 246899999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 230 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~ 230 (246)
|+++.|+++++|++|+|+++++.|+|++.+...
T Consensus 234 Gd~a~IGAgSVV~kdVP~~~~v~G~PAkiv~~~ 266 (294)
T PLN02694 234 GEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGK 266 (294)
T ss_pred CCCCEECCCCEECCcCCCCcEEEccCcEEEccC
Confidence 999999999999999999999999999988753
No 89
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.62 E-value=3.5e-14 Score=109.45 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=43.3
Q ss_pred cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc-CcEEeccCCC
Q 025890 159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA-NSCVFKDITE 215 (246)
Q Consensus 159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~-~s~v~~~~~~ 215 (246)
+.|++++.++.++.+..++.|+++++|+.++.+.+++.++++++++. .+.+.+++++
T Consensus 90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~ 147 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPE 147 (161)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecch
Confidence 44445555555555556778888899999999999999999999876 7888888876
No 90
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.62 E-value=1.7e-14 Score=118.75 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=43.7
Q ss_pred CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec
Q 025890 140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK 211 (246)
Q Consensus 140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~ 211 (246)
++.|+++|.++.++.+..++.||+++.++.++.+..++.|.+.. .++++.+. |++++++.+++...+
T Consensus 176 ~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~---~g~v~~g~--vp~~svvv~g~~~~~ 242 (272)
T PRK11830 176 PVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE---TGEVHYGR--VPAGSVVVPGSLPSK 242 (272)
T ss_pred CeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC---CCcEEeee--cCCCcEEecCccccc
Confidence 45666666666666666677777777776666666666666652 44555433 778888887877665
No 91
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.61 E-value=1.1e-14 Score=112.29 Aligned_cols=81 Identities=30% Similarity=0.455 Sum_probs=60.0
Q ss_pred eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEE
Q 025890 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYG 220 (246)
Q Consensus 141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~ 220 (246)
+.|++++.+++++.|++++.|+....-.. ....+||++|+|+.++.+.++++||+++.|+++|+|.+|+|+++++.
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~----~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~ 157 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLGGTGKEKG----KRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVV 157 (162)
T ss_pred EEECCCCEECCCCEEcCCCEECCCccccC----CcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEEE
Confidence 34444444444444444444443211000 23479999999999999999999999999999999999999999999
Q ss_pred ccCch
Q 025890 221 GFPAV 225 (246)
Q Consensus 221 g~p~~ 225 (246)
|+|||
T Consensus 158 G~Par 162 (162)
T TIGR01172 158 GVPAR 162 (162)
T ss_pred eecCC
Confidence 99986
No 92
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.61 E-value=1.2e-15 Score=118.75 Aligned_cols=90 Identities=30% Similarity=0.384 Sum_probs=71.3
Q ss_pred CeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeE
Q 025890 140 DTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDY 219 (246)
Q Consensus 140 ~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~ 219 (246)
+++||+-..+++++.+.|++.+|.-- .++.-+ +-+|||++|||++++|.+++.||.+++|++||+|.||+|++++.
T Consensus 168 gvvigeTAvvg~~vSilH~Vtlggtg---k~~gdr-hP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~A 243 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILHPVTLGGTG---KGSGDR-HPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLA 243 (269)
T ss_pred ceeecceeEeccceeeecceeecccc---cccccc-CCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCcee
Confidence 45666666666666666777776422 122222 34999999999999999999999999999999999999999999
Q ss_pred EccCchhhHHHHHH
Q 025890 220 GGFPAVPIHEWRRQ 233 (246)
Q Consensus 220 ~g~p~~~~~~~~~~ 233 (246)
.|+|||.++...+.
T Consensus 244 vGnPAklIg~~~e~ 257 (269)
T KOG4750|consen 244 VGNPAKLIGKIDEK 257 (269)
T ss_pred cCCchhhccccccc
Confidence 99999999866543
No 93
>PRK10191 putative acyl transferase; Provisional
Probab=99.60 E-value=8.7e-15 Score=110.13 Aligned_cols=103 Identities=24% Similarity=0.284 Sum_probs=81.8
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
.+.|...+.+++++.|..+ ..+.++.++.+++++.+++++.||++... ..+.++|||+|+||+++.+.+++.|
T Consensus 41 g~~I~~~a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~~-----~~~~~~IGd~~~Ig~~~~I~~~v~I 113 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGAD-----NMACPHIGNGVELGANVIILGDITI 113 (146)
T ss_pred CcccCCCCEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCcC-----CCCCCEECCCcEEcCCCEEeCCCEE
Confidence 4556666666666666543 34677777777777777777777766432 1245799999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPI 227 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~ 227 (246)
++++++++++++.+|+|+++++.|.||+.+
T Consensus 114 G~~~~Igags~V~~dv~~~~~v~G~pA~~~ 143 (146)
T PRK10191 114 GNNVTVGAGSVVLDSVPDNALVVGEKARVK 143 (146)
T ss_pred CCCCEECCCCEECCccCCCcEEEccCcEEE
Confidence 999999999999999999999999999754
No 94
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.60 E-value=5.5e-15 Score=113.67 Aligned_cols=105 Identities=30% Similarity=0.434 Sum_probs=85.5
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
.+.|...+.||++..|..+ .+++||+.+.+++++.|.++++||..-.-.+ ..+-+||+++.||+++.|..+.+|
T Consensus 67 gieIhp~A~IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g----~RhPtIg~~V~IGagAkILG~I~I 140 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG----KRHPTIGNGVYIGAGAKILGNIEI 140 (194)
T ss_pred ceeeCCCCeECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC----CCCCccCCCeEECCCCEEEcceEE
Confidence 5566666666666666655 4677888888888778878888875433222 346799999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchhhH
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIH 228 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~ 228 (246)
|+++.|+++|+|.+|+|+++++.|.||+.+.
T Consensus 141 Gd~akIGA~sVVlkdVP~~~tvvGvPArii~ 171 (194)
T COG1045 141 GDNAKIGAGSVVLKDVPPNATVVGVPARVIG 171 (194)
T ss_pred CCCCEECCCceEccCCCCCceEecCcceEec
Confidence 9999999999999999999999999999986
No 95
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.59 E-value=3.5e-14 Score=132.07 Aligned_cols=59 Identities=20% Similarity=0.127 Sum_probs=52.3
Q ss_pred eeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEec--cCCCCCeEEccCchhhHH
Q 025890 171 VGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK--DITEPGDYGGFPAVPIHE 229 (246)
Q Consensus 171 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~--~~~~~~~~~g~p~~~~~~ 229 (246)
.+..+.++||++++||.++++.+|++|++++.++..|.+.+ .+++++.+.|+|+..+..
T Consensus 396 ~l~~~~i~IG~~afVGn~~vv~pG~~ig~~~llg~~S~~p~~~~~~~g~~w~GSPa~~l~~ 456 (695)
T TIGR02353 396 WFRLGRTRIGRRSFLGNSGYYPPGAKTGDNVLLGVLSMTPKDGKVREGVGWLGSPPFELPR 456 (695)
T ss_pred eEEEeeEEECCCcEEcCceeECCCCEeCCCCEEeecccCCCCccCCCCCEEeCCCCeeCCc
Confidence 34445699999999999999999999999999999999987 588889999999977663
No 96
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.59 E-value=2.4e-14 Score=108.12 Aligned_cols=58 Identities=29% Similarity=0.327 Sum_probs=54.8
Q ss_pred ecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhhHHHH
Q 025890 174 AGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWR 231 (246)
Q Consensus 174 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~ 231 (246)
..+++||++|+||.++.+.+++.|+++++|+++|+|++++|+++++.|+||+.++.+.
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~~ 128 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYRF 128 (145)
T ss_pred cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhhC
Confidence 4579999999999999999999999999999999999999999999999999998764
No 97
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.56 E-value=6.7e-14 Score=103.77 Aligned_cols=87 Identities=14% Similarity=0.232 Sum_probs=65.3
Q ss_pred eEECCCcEECcccEEcCCCccCeEECCCCEEC----CCCEEccCcEECCCcEEccceeEecc----eEECCCeEECcCcE
Q 025890 119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKID----NLVQIGHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRVA 190 (246)
Q Consensus 119 ~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~----~~~~i~~~~~Ig~~~~i~~~~~~~~~----~~Ig~~~~Ig~~~~ 190 (246)
+.||+++.|.+++.+.. ++.+|+++.+. .++.|+++|.|++++.+. +.+.++ ++||++|+||.+++
T Consensus 14 a~IG~GtvI~~gavV~~----~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~--~~l~G~~~~pV~IG~~~~IG~ga~ 87 (147)
T cd04649 14 AYLAEGTTVMHEGFVNF----NAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM--GTLSGGGNNVISIGKRCLLGANSG 87 (147)
T ss_pred CEECCCcEECCCCEEcc----CCEECCCeEECCcccCCEEECCCCEECCCCEEE--EECCCCcccCEEECCCCEECCCCE
Confidence 34444444444444443 25555555555 778888888888888888 556666 99999999999999
Q ss_pred ECCCcEECCCCEEccCcEEeccC
Q 025890 191 VRDHVSIASKVRLAANSCVFKDI 213 (246)
Q Consensus 191 v~~~~~ig~~~~v~~~s~v~~~~ 213 (246)
| ++.||++++|+++++|+|.-
T Consensus 88 I--gv~IG~~~vIGaGsvV~k~t 108 (147)
T cd04649 88 I--GISLGDNCIVEAGLYVTAGT 108 (147)
T ss_pred E--eEEECCCCEECCCCEEeCCe
Confidence 9 79999999999999998753
No 98
>PLN02357 serine acetyltransferase
Probab=99.55 E-value=4.2e-14 Score=119.62 Aligned_cols=107 Identities=28% Similarity=0.389 Sum_probs=84.8
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
.+.|+.++.||.++.|... .++.||+++.|++++.|.++++||....-.. ..+++||++|+||+++.|.++++|
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~~~g----~~~piIGd~V~IGagA~IlggV~I 299 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGKQSG----DRHPKIGDGVLIGAGTCILGNITI 299 (360)
T ss_pred ceeeCCCCEECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccccCC----ccCceeCCCeEECCceEEECCeEE
Confidence 4567777777777777643 3467777777777777777777765321111 235899999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchhhHHH
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEW 230 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~ 230 (246)
|+++.|+++++|.+|+|+++++.|+||+.+...
T Consensus 300 Gdga~IGAgSVV~~dVP~~~~v~G~PArvv~~~ 332 (360)
T PLN02357 300 GEGAKIGAGSVVLKDVPPRTTAVGNPARLIGGK 332 (360)
T ss_pred CCCCEECCCCEECcccCCCcEEECCCeEEEccC
Confidence 999999999999999999999999999988754
No 99
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.54 E-value=2.5e-13 Score=108.35 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=89.4
Q ss_pred ECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCc
Q 025890 30 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGN 109 (246)
Q Consensus 30 i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~ 109 (246)
+++++.|+++|.|. ++.|++++.|+++|.|. +++||++++|+.++.+.++.||++|.|++++.|....-.
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~-------- 74 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHP-------- 74 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCC--------
Confidence 34555666666664 46777777777777775 677888888888888877888888888888877631100
Q ss_pred eeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCc
Q 025890 110 MLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRV 189 (246)
Q Consensus 110 ~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~ 189 (246)
-++....+.+......+... .+..... .-....++.||++++++.++.+..+++||+++.|++++
T Consensus 75 ------------~~~~s~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs 139 (204)
T TIGR03308 75 ------------MERPTLHHFTYRAAMYFDDA--SDDADFF-AWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGA 139 (204)
T ss_pred ------------CCcccccccccccccccccc--ccccccc-ccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCC
Confidence 00000000000000000000 0000000 00123567777777777777778888999999999999
Q ss_pred EECCCcEECCCCEEccC
Q 025890 190 AVRDHVSIASKVRLAAN 206 (246)
Q Consensus 190 ~v~~~~~ig~~~~v~~~ 206 (246)
+|.++ ++++++++..
T Consensus 140 ~v~~~--i~~~~~~~G~ 154 (204)
T TIGR03308 140 VVTKD--VAPYTIVAGV 154 (204)
T ss_pred EECCC--CCCCcEEEec
Confidence 99876 6677766443
No 100
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.52 E-value=2.9e-13 Score=96.10 Aligned_cols=99 Identities=29% Similarity=0.437 Sum_probs=71.6
Q ss_pred eEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEEC
Q 025890 119 ARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 198 (246)
Q Consensus 119 ~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig 198 (246)
+.|++++.|++++.+... ..+.+++++.+++++.+..++.|+.++.+ ....++.|+++|+|+.++.+.++++|+
T Consensus 3 ~~i~~~~~ig~~~~i~~~--~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~----~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig 76 (101)
T cd03354 3 IDIHPGAKIGPGLFIDHG--TGIVIGETAVIGDNCTIYQGVTLGGKGKG----GGKRHPTIGDNVVIGAGAKILGNITIG 76 (101)
T ss_pred eEeCCCCEECCCEEECCC--CeEEECCCCEECCCCEEcCCCEECCCccC----CcCCCCEECCCcEEcCCCEEECcCEEC
Confidence 445555555555555432 23445555555555555555555555432 135668999999999999999999999
Q ss_pred CCCEEccCcEEeccCCCCCeEEccC
Q 025890 199 SKVRLAANSCVFKDITEPGDYGGFP 223 (246)
Q Consensus 199 ~~~~v~~~s~v~~~~~~~~~~~g~p 223 (246)
+++++++++.+.+++|+++++.|+|
T Consensus 77 ~~~~i~~~~~i~~~~~~~~~~~G~P 101 (101)
T cd03354 77 DNVKIGANAVVTKDVPANSTVVGVP 101 (101)
T ss_pred CCCEECCCCEECcccCCCCEEEeCC
Confidence 9999999999999999999999998
No 101
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.50 E-value=3.3e-13 Score=97.02 Aligned_cols=56 Identities=30% Similarity=0.343 Sum_probs=51.5
Q ss_pred eEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCCCCeEEccCchhh
Q 025890 172 GIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITEPGDYGGFPAVPI 227 (246)
Q Consensus 172 ~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~~~~~~g~p~~~~ 227 (246)
....++.||++|+|+.++.+.+++.|++++.+++++.+.+++|+++++.|.||+.+
T Consensus 54 ~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~i~~~~i~~g~pa~~~ 109 (109)
T cd04647 54 VTSAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTKDVPPNSIVAGNPAKVI 109 (109)
T ss_pred cccCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEeeECCCCCEEEccccEeC
Confidence 44567999999999999999999999999999999999999999999999999864
No 102
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.45 E-value=3.4e-12 Score=100.83 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=34.1
Q ss_pred CCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890 151 NLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 204 (246)
Q Consensus 151 ~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~ 204 (246)
.++.+.+++.||++|+++.++.+..+++|++++.++++++|.++ +++++++.
T Consensus 143 ~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~ 194 (197)
T cd03360 143 PGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVVTKD--VPDGSVVV 194 (197)
T ss_pred CCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEEcCC--CCCCCEEE
Confidence 33344445555666666666666667888888888888888876 44555543
No 103
>PLN02296 carbonate dehydratase
Probab=99.45 E-value=6.5e-12 Score=103.88 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=56.6
Q ss_pred eEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCCCC
Q 025890 141 TVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEPG 217 (246)
Q Consensus 141 ~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~~~ 217 (246)
+.||+++.|+.++.+ +++.|+++|+|+.++.+..+++|+++|.|+++++|.++++|++++++ +..+.+.+++++..
T Consensus 120 siIG~~v~IG~~avI-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~ 196 (269)
T PLN02296 120 TIIGDNVTIGHSAVL-HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEE 196 (269)
T ss_pred cEeCCCCEECCCcee-cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHHH
Confidence 333444444444444 45677777777777777888999999999999999999999999975 66677878887654
No 104
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.3e-13 Score=120.42 Aligned_cols=109 Identities=27% Similarity=0.407 Sum_probs=85.6
Q ss_pred CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcC
Q 025890 27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 106 (246)
Q Consensus 27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~ 106 (246)
+.+-++.+.+.+.+.++.++.||..+.||.++.|. |++||.+|.||.|+.|.+++|+.+|+|+++|.|+
T Consensus 315 ~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~---------- 383 (673)
T KOG1461|consen 315 NIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRID---------- 383 (673)
T ss_pred ccccCccceehhhccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEe----------
Confidence 34556777777778888888888888888888884 8888999999999999999999999999999987
Q ss_pred CCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEE
Q 025890 107 HGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAI 161 (246)
Q Consensus 107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~I 161 (246)
+++|++++.|++++++.++ ++++.++.++.+..+..++.+
T Consensus 384 -----------~aii~d~v~i~~~~~l~~g----~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 384 -----------HAIICDDVKIGEGAILKPG----SVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred -----------eeEeecCcEeCCCcccCCC----cEEeeeeEeCCCccccccccc
Confidence 8888888888888888754 566666666665555555444
No 105
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.44 E-value=3.7e-12 Score=101.30 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=34.4
Q ss_pred CEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890 147 SKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 204 (246)
Q Consensus 147 ~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~ 204 (246)
+.++.++.+..++.++++++++.++.+..+++|+++|+|++++++.++ +++++++.
T Consensus 142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~--~~~~~~~~ 197 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTKD--IPDGGVVV 197 (201)
T ss_pred CEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECCc--CCCCCEEE
Confidence 333333444445555555555566666667788888888888888765 55655443
No 106
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.43 E-value=6.8e-13 Score=106.77 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=18.7
Q ss_pred eEECCCeEECcCcEECCCcEECCCC--EEccCcEE-eccCC
Q 025890 177 ATIGDYVTLGGRVAVRDHVSIASKV--RLAANSCV-FKDIT 214 (246)
Q Consensus 177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~--~v~~~s~v-~~~~~ 214 (246)
+.+||+|.|.++++|.++++|..-. .+ +++++ .+++|
T Consensus 201 V~vGdg~VV~aGv~I~~~tki~~~~~g~~-~~svv~~~~lp 240 (271)
T COG2171 201 VIVGDGCVVAAGVFITQDTKIYDRVAGRV-AGSVVVAGTLP 240 (271)
T ss_pred eEeCCCcEEecceEEeCCcceEEeecccc-ccceEeecccC
Confidence 4555555555566666665554421 22 44443 34566
No 107
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.43 E-value=1.6e-12 Score=113.64 Aligned_cols=127 Identities=22% Similarity=0.177 Sum_probs=72.0
Q ss_pred EEeechhhhhhhcccCCCc-------eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECC---CcEECCCCEEC
Q 025890 4 YVSDIESRQQFQKWHNGGG-------IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGP---AVTIGQSTNIG 73 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-------~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~---~~~ig~~~~I~ 73 (246)
||.++++.+.+.+...... .+++...+...+.+...+.|++++.| .++.|+++|.|.+ +++|+++|.|+
T Consensus 240 ~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~ 318 (380)
T PRK05293 240 YWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVG 318 (380)
T ss_pred EEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEEC
Confidence 7999999999876543111 11122222233333333444444444 2344444444432 46677777777
Q ss_pred CceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCC
Q 025890 74 FNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL 152 (246)
Q Consensus 74 ~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~ 152 (246)
++|.|.++.|++++.|++++.|. +++|++++.|++++.+..+...+..+|+++.+.+.
T Consensus 319 ~~~~i~~svi~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~ 376 (380)
T PRK05293 319 EGSVVKDSVIMPGAKIGENVVIE---------------------RAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVG 376 (380)
T ss_pred CCCEEECCEEeCCCEECCCeEEe---------------------EEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCC
Confidence 77777777777777777777775 67777777777777666554333444444444443
No 108
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.6e-12 Score=112.38 Aligned_cols=104 Identities=31% Similarity=0.468 Sum_probs=78.0
Q ss_pred EEeechhhhhhhcccCCCceec---cCcEECCCc-EEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEe
Q 025890 4 YVSDIESRQQFQKWHNGGGIFH---QSACIDSTV-LIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALS 79 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~---~~~~i~~~~-~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~ 79 (246)
||.|+++++.+.+.......-. ....+...+ .+.. +.|.++++|++++.|++++.|+++++||++|.|++++.|.
T Consensus 217 ~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~ 295 (358)
T COG1208 217 YWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIK 295 (358)
T ss_pred eEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEE
Confidence 8999999999876665322111 111111111 1445 7888888999999999999999999999999999999999
Q ss_pred ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECc
Q 025890 80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 129 (246)
Q Consensus 80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~ 129 (246)
+|.|.++|.|++++.|. +++|++++.|++
T Consensus 296 ~Sii~~~~~i~~~~~i~---------------------~sIi~~~~~ig~ 324 (358)
T COG1208 296 NSIIMDNVVIGHGSYIG---------------------DSIIGENCKIGA 324 (358)
T ss_pred eeEEEcCCEECCCCEEe---------------------eeEEcCCcEECC
Confidence 99999999999999886 677777777765
No 109
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.42 E-value=3.9e-12 Score=92.92 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=8.9
Q ss_pred cceEECCCeEECcCcEECC
Q 025890 175 GSATIGDYVTLGGRVAVRD 193 (246)
Q Consensus 175 ~~~~Ig~~~~Ig~~~~v~~ 193 (246)
.+++|++++.|++++++.+
T Consensus 84 ~~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 84 PGVTIGEYALVGAGAVVTK 102 (119)
T ss_pred CCcEECCCCEEccCCEEeC
Confidence 3344444444445555444
No 110
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.41 E-value=9.6e-12 Score=92.35 Aligned_cols=38 Identities=26% Similarity=0.558 Sum_probs=25.5
Q ss_pred cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEEC
Q 025890 159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 198 (246)
Q Consensus 159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig 198 (246)
+.||++|+|+.++.+ ++.||++|.||++++|.++++|-
T Consensus 74 V~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i~ 111 (147)
T cd04649 74 ISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAGTKVT 111 (147)
T ss_pred EEECCCCEECCCCEE--eEEECCCCEECCCCEEeCCeEEE
Confidence 444444444444444 37888889988888888887763
No 111
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.40 E-value=5.1e-12 Score=104.36 Aligned_cols=86 Identities=16% Similarity=0.312 Sum_probs=64.4
Q ss_pred ceEECCCcEECcccEEcCCCccCeE-ECCCCE---ECCCCEEccCcEECCCcEEccceeEecc----eEECCCeEECcCc
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTV-IGDHSK---IDNLVQIGHNVAIGKSCMLCGQVGIAGS----ATIGDYVTLGGRV 189 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~-ig~~~~---v~~~~~i~~~~~Ig~~~~i~~~~~~~~~----~~Ig~~~~Ig~~~ 189 (246)
.+.||+++.|.+++.|+. ++. +|+.+. +..++.|+++|.||+++.| ...+.++ +.||++|+||.++
T Consensus 190 gA~LGeGT~IM~~a~Vn~----nAgtiG~~~IEgrInsGavIGhds~IG~gasI--g~tLsGg~~~~V~IGe~~lIGagA 263 (341)
T TIGR03536 190 GAYVGEGTTVMHEGFINF----NAGTEGPSMVEGRISAGVMVGKGSDLGGGCST--MGTLSGGGNIVISVGEGCLLGANA 263 (341)
T ss_pred CcEECCCCEEecCCEECc----CcEecCCceEecccccCCEECCCCEECCCCEE--eEEEeCCCceeEEECCCcEECCCC
Confidence 455555555555555553 233 566666 6667788888888888888 4466777 9999999999999
Q ss_pred EECCCcEECCCCEEccCcEEec
Q 025890 190 AVRDHVSIASKVRLAANSCVFK 211 (246)
Q Consensus 190 ~v~~~~~ig~~~~v~~~s~v~~ 211 (246)
.| ++.||++++|++|++|+.
T Consensus 264 ~I--GI~IGd~~iIGAGavVta 283 (341)
T TIGR03536 264 GI--GIPLGDRCTVEAGLYITA 283 (341)
T ss_pred EE--eeEECCCCEECCCCEEeC
Confidence 99 999999999999998863
No 112
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.39 E-value=8.3e-12 Score=103.13 Aligned_cols=39 Identities=23% Similarity=0.549 Sum_probs=27.3
Q ss_pred cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECC
Q 025890 159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIAS 199 (246)
Q Consensus 159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~ 199 (246)
+.||++|+++.++.+ ++.||++|.|+++++|.++++|.-
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~~ 289 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAV 289 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEEE
Confidence 444555555555554 588899999999988888888743
No 113
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.39 E-value=3.1e-12 Score=113.77 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=96.7
Q ss_pred EEeechhhhhhhcccCCCceecc-CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccE
Q 025890 4 YVSDIESRQQFQKWHNGGGIFHQ-SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCI 82 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~~-~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~ 82 (246)
||.|+++.+.|.+.......-.+ .....+...|.......++ +.+ .++.+.+ +.|+++|.|+ ++.|.++.
T Consensus 263 yw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~------~~~-~~~~i~~-s~I~~~~~I~-~~~I~~sv 333 (436)
T PLN02241 263 YWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPP------SKI-EDCRITD-SIISHGCFLR-ECKIEHSV 333 (436)
T ss_pred EEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCC------cEe-cCCeEEE-eEEcCCcEEc-CeEEEeeE
Confidence 89999999998766653221111 1122222222222222222 333 3444443 6667777777 77777778
Q ss_pred ECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECccc---EEcCCCccCeEECCCCEECCCCEEccCc
Q 025890 83 IGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS---CIDRGSWRDTVIGDHSKIDNLVQIGHNV 159 (246)
Q Consensus 83 Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~---~i~~~~~~~~~ig~~~~v~~~~~i~~~~ 159 (246)
|+++|.|+++|.|.. .+++|.+ ....+. .+......++.|++++.+. ++.+++++
T Consensus 334 I~~~~~Ig~~~~I~~--------------------sii~g~~-~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~vI~~~v 391 (436)
T PLN02241 334 VGLRSRIGEGVEIED--------------------TVMMGAD-YYETEEEIASLLAEGKVPIGIGENTKIR-NAIIDKNA 391 (436)
T ss_pred EcCCCEECCCCEEEE--------------------eEEECCC-ccccccccccccccCCcceEECCCCEEc-ceEecCCC
Confidence 888888888887762 3333422 111111 1110000013566666665 57778888
Q ss_pred EECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcE
Q 025890 160 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSC 208 (246)
Q Consensus 160 ~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~ 208 (246)
+||+++.+.....+.+..++|++|.++++. +.|++++.++++|+
T Consensus 392 ~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ 435 (436)
T PLN02241 392 RIGKNVVIINKDGVQEADREEEGYYIRSGI-----VVILKNAVIPDGTV 435 (436)
T ss_pred EECCCcEEecccccCCccccccccEEeCCE-----EEEcCCcEeCCCCC
Confidence 888888888777778888888888888774 45555666666554
No 114
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.6e-12 Score=113.83 Aligned_cols=93 Identities=33% Similarity=0.491 Sum_probs=75.3
Q ss_pred cCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECC
Q 025890 44 SKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGN 123 (246)
Q Consensus 44 ~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 123 (246)
.+.+-++++.+.+.|.++.++.||.++.|+.++.|.++.||.+|.||.+++|. +++|++
T Consensus 314 ~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~---------------------~S~iw~ 372 (673)
T KOG1461|consen 314 RNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIK---------------------NSFIWN 372 (673)
T ss_pred cccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEe---------------------eeeeec
Confidence 34566788888888999999999999999999999999999999999999997 899999
Q ss_pred CcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEEC
Q 025890 124 HVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIG 162 (246)
Q Consensus 124 ~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig 162 (246)
+|.|+.||.|.. +.|++++.++.++.+.+++.|+
T Consensus 373 ~v~Igdnc~I~~-----aii~d~v~i~~~~~l~~g~vl~ 406 (673)
T KOG1461|consen 373 NVTIGDNCRIDH-----AIICDDVKIGEGAILKPGSVLG 406 (673)
T ss_pred CcEECCCceEee-----eEeecCcEeCCCcccCCCcEEe
Confidence 999999999973 4555555555544444444444
No 115
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.34 E-value=1.3e-11 Score=101.40 Aligned_cols=86 Identities=16% Similarity=0.312 Sum_probs=71.4
Q ss_pred ceEECCCcEECcccEEcCCCccCe-EECCCCEECCCCEEccCcEECCCcEEcccee----Eecc----eEECCCeEECcC
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDT-VIGDHSKIDNLVQIGHNVAIGKSCMLCGQVG----IAGS----ATIGDYVTLGGR 188 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~-~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~----~~~~----~~Ig~~~~Ig~~ 188 (246)
.+.||+++.|.+.+.|..+ + .+|+. .+ ++.|+++|.||+++.|++++. +.++ +.||++|+||.+
T Consensus 165 GAyLGeGtvVm~~a~VN~n----AgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGag 237 (319)
T TIGR03535 165 GAHLAEGTTVMHEGFVNFN----AGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGAN 237 (319)
T ss_pred ccEECCCCEEcCCCEEccC----ceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCC
Confidence 5667777777777777743 5 57775 55 578899999999999999998 5557 999999999999
Q ss_pred cEECCCcEECCCCEEccCcEEecc
Q 025890 189 VAVRDHVSIASKVRLAANSCVFKD 212 (246)
Q Consensus 189 ~~v~~~~~ig~~~~v~~~s~v~~~ 212 (246)
+.| ++.||++|+|++|++|++.
T Consensus 238 A~I--GI~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 238 SGL--GISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred CEE--CeEECCCCEECCCCEEeCC
Confidence 999 9999999999999999864
No 116
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.33 E-value=5.7e-11 Score=94.11 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=45.9
Q ss_pred cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEE-ccCcEEeccCCCC
Q 025890 157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRL-AANSCVFKDITEP 216 (246)
Q Consensus 157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v-~~~s~v~~~~~~~ 216 (246)
..+.||++++++.++.+.++++||++|+|+++++|.++ +++++++ +..+.+.+...+.
T Consensus 129 ~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~~ 187 (192)
T PRK09677 129 SAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNHE 187 (192)
T ss_pred CCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCcc
Confidence 56778888888888888889999999999999999985 6777765 4556666666543
No 117
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=4.9e-11 Score=84.48 Aligned_cols=85 Identities=20% Similarity=0.303 Sum_probs=67.8
Q ss_pred CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcC
Q 025890 27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 106 (246)
Q Consensus 27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~ 106 (246)
..++++++.|++++.+.++++|+++++|++++.|++++.|+++|.|+. .|.++.|++++.+.+++.|+
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg---------- 78 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG---------- 78 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe----------
Confidence 466777777777777877788888888888888888888888888865 46778888888888888886
Q ss_pred CCceeecCcccceEECCCcEECcccEEc
Q 025890 107 HGNMLKKPQLLNARIGNHVEIGANSCID 134 (246)
Q Consensus 107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~ 134 (246)
+++||+++.|++++...
T Consensus 79 -----------~siIg~~v~ig~~~~~~ 95 (101)
T cd05635 79 -----------HSYLGSWCNLGAGTNNS 95 (101)
T ss_pred -----------eeEECCCCEECCCceec
Confidence 78888888888887765
No 118
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.29 E-value=6.6e-11 Score=92.77 Aligned_cols=51 Identities=27% Similarity=0.478 Sum_probs=38.6
Q ss_pred EEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890 154 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 206 (246)
Q Consensus 154 ~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~ 206 (246)
.+...+.||++++|+.++.+..+++||++|+|+++++|.++ ++++++++..
T Consensus 125 ~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~ 175 (183)
T PRK10092 125 ELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGN 175 (183)
T ss_pred eecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEec
Confidence 34456677777777777777788999999999999999886 5677766543
No 119
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.28 E-value=5.8e-11 Score=80.74 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=40.6
Q ss_pred CCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890 31 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 31 ~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 96 (246)
++++.|++++.|. ++.|++++.|+++|.|. +++|++++.|++++.|.++.+++++.|++++.+.
T Consensus 3 g~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~ 66 (81)
T cd04652 3 GENTQVGEKTSIK-RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK 66 (81)
T ss_pred cCCCEECCCCEEe-CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc
Confidence 4455555555554 35566666666666664 3666667777777777777777777777777764
No 120
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.28 E-value=6.2e-11 Score=94.16 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=42.7
Q ss_pred ccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC-cEEeccC
Q 025890 156 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN-SCVFKDI 213 (246)
Q Consensus 156 ~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~-s~v~~~~ 213 (246)
.+.+.||++++|+.++.+..+++||++|+|+++++|.++ ++++++++.. +.+.+.+
T Consensus 129 ~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--vp~~~v~~G~PAk~i~~~ 185 (203)
T PRK09527 129 SFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--IPPNVVAAGVPCRVIREI 185 (203)
T ss_pred cCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCcEEEeeCCEEeccC
Confidence 456778888888888888889999999999999999986 5677766433 4444444
No 121
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.27 E-value=8.6e-11 Score=91.26 Aligned_cols=51 Identities=29% Similarity=0.416 Sum_probs=41.5
Q ss_pred EEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890 154 QIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 206 (246)
Q Consensus 154 ~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~ 206 (246)
...+++.||++|+|+.++.+.++++||++|+||++++|.++ +++++++...
T Consensus 114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~ 164 (169)
T cd03357 114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGN 164 (169)
T ss_pred eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEcc
Confidence 44577888888888888888899999999999999999986 6677765443
No 122
>PRK10502 putative acyl transferase; Provisional
Probab=99.26 E-value=1.1e-10 Score=91.63 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=37.2
Q ss_pred ccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890 156 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 206 (246)
Q Consensus 156 ~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~ 206 (246)
...+.||++++|+.++.+..+++||+++.|++++++.++ ++++++++..
T Consensus 122 ~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~ 170 (182)
T PRK10502 122 TAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGN 170 (182)
T ss_pred cCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECC
Confidence 355677777777777777788899999999999998875 6677766544
No 123
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.25 E-value=1.6e-10 Score=95.12 Aligned_cols=38 Identities=21% Similarity=0.523 Sum_probs=26.1
Q ss_pred cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEEC
Q 025890 159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIA 198 (246)
Q Consensus 159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig 198 (246)
+.||++|+|+.++.+ ++.||++|.||++++|.++++|.
T Consensus 226 V~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v~ 263 (319)
T TIGR03535 226 ISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKVT 263 (319)
T ss_pred EEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEEE
Confidence 444444444444444 47888899999998888888774
No 124
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.25 E-value=6.2e-11 Score=102.70 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=12.3
Q ss_pred EEeechhhhhhhcccC
Q 025890 4 YVSDIESRQQFQKWHN 19 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (246)
||.++++++.+.+...
T Consensus 217 ~w~digt~~dl~~a~~ 232 (353)
T TIGR01208 217 WWKDTGKPEDLLDANR 232 (353)
T ss_pred EEEeCCCHHHHHHHHH
Confidence 7999999988765444
No 125
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=1.1e-10 Score=79.24 Aligned_cols=64 Identities=19% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890 32 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 32 ~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 96 (246)
+++.|++++.|++++.|+++++|+++|.|. ++++++++.|++++.|.++.+++++.+++++.+.
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~ 67 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLE 67 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEe
Confidence 344444444444445555555555555553 4455555555555555555555555555555553
No 126
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=1.2e-10 Score=78.98 Aligned_cols=66 Identities=23% Similarity=0.451 Sum_probs=51.0
Q ss_pred CCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEEC
Q 025890 49 GANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIG 128 (246)
Q Consensus 49 ~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig 128 (246)
+++++|++++.|++++.|+++|.|++++.|.++.+++++.|++++.|. ++++++++.++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~---------------------~sii~~~~~v~ 61 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVK---------------------SSIVGWNSTVG 61 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEe---------------------CCEEeCCCEEC
Confidence 445566666666666667777777778888888899999999999886 78888888888
Q ss_pred cccEEcC
Q 025890 129 ANSCIDR 135 (246)
Q Consensus 129 ~~~~i~~ 135 (246)
+++.+..
T Consensus 62 ~~~~~~~ 68 (80)
T cd05824 62 RWTRLEN 68 (80)
T ss_pred CCcEEec
Confidence 8877763
No 127
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.23 E-value=1.6e-11 Score=89.18 Aligned_cols=96 Identities=20% Similarity=0.378 Sum_probs=50.5
Q ss_pred eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890 79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN 158 (246)
Q Consensus 79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~ 158 (246)
.+..+|..|.++..++|.+.. ..+.+.+...+.-||++++|++.|++.+. .+++.++++.+
T Consensus 53 AnVr~GryCV~ksrsvIRPp~--------K~FSKg~affp~hiGdhVFieE~cVVnAA-----------qIgsyVh~Gkn 113 (184)
T KOG3121|consen 53 ANVRIGRYCVLKSRSVIRPPM--------KIFSKGPAFFPVHIGDHVFIEEECVVNAA-----------QIGSYVHLGKN 113 (184)
T ss_pred ccceEcceEEeccccccCCch--------HHhcCCceeeeeeecceEEEecceEeehh-----------hheeeeEeccc
Confidence 356677777777777776531 11222222336677888888877777652 22333333333
Q ss_pred cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890 159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 205 (246)
Q Consensus 159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~ 205 (246)
+.||+ .+++.|-|.|-.++++.+.+.+++++.+++
T Consensus 114 aviGr------------rCVlkdCc~ild~tVlPpet~vppy~~~~g 148 (184)
T KOG3121|consen 114 AVIGR------------RCVLKDCCRILDDTVLPPETLVPPYSTIGG 148 (184)
T ss_pred eeEcC------------ceEhhhheeccCCcccCcccccCCceEEcC
Confidence 33333 334455555555555555555444444433
No 128
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.23 E-value=1.3e-10 Score=78.59 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=15.1
Q ss_pred cEECCCCEECCceEEeccEECCCcEECCCeEE
Q 025890 64 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCI 95 (246)
Q Consensus 64 ~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i 95 (246)
+.|+++|+|++++.|.++.|++++.|++++.|
T Consensus 17 s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i 48 (79)
T cd03356 17 SVIGDNVRIGDGVTITNSILMDNVTIGANSVI 48 (79)
T ss_pred CEECCCCEECCCCEEeCCEEeCCCEECCCCEE
Confidence 34444444444444444445555555555544
No 129
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.23 E-value=1.3e-10 Score=78.42 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=32.3
Q ss_pred CCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890 31 DSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 31 ~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 96 (246)
++++.|++++.|. ++.|++++.|++++.|. ++.++++++|++++.|.++.|++++.|++++.+.
T Consensus 3 g~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 66 (79)
T cd05787 3 GRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP 66 (79)
T ss_pred cCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence 3444444444443 34455555555555553 4455555555555555555555555555555443
No 130
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.21 E-value=2e-10 Score=77.66 Aligned_cols=65 Identities=31% Similarity=0.525 Sum_probs=54.8
Q ss_pred ECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890 30 IDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 30 i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 96 (246)
+++++.|++++.|.+ +.|+++++|++++.|. +++|+++++|++++.|.++.+++++.|++++.+.
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~ 66 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIVDSIIGDNAVIGENVRVV 66 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEECCEECCCCEECCCCEEc
Confidence 456677777777775 7888888888888886 6788999999999999999999999999998886
No 131
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.20 E-value=2.1e-10 Score=77.99 Aligned_cols=65 Identities=32% Similarity=0.568 Sum_probs=44.3
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEE
Q 025890 48 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 127 (246)
Q Consensus 48 i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i 127 (246)
|++++.|++++.|. ++.|++++.|++++.|.++.+++++.|++++.|. ++.+++++.+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~---------------------~svi~~~~~i 59 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLE---------------------NCIIGNGAVI 59 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEe---------------------ccEEeCCCEE
Confidence 34455555555554 4566666777777777777777888888888775 6777777777
Q ss_pred CcccEEc
Q 025890 128 GANSCID 134 (246)
Q Consensus 128 g~~~~i~ 134 (246)
++++.+.
T Consensus 60 ~~~~~v~ 66 (81)
T cd04652 60 GEKCKLK 66 (81)
T ss_pred CCCCEEc
Confidence 7777664
No 132
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.20 E-value=1.9e-10 Score=77.58 Aligned_cols=48 Identities=35% Similarity=0.585 Sum_probs=30.7
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890 48 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 48 i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 96 (246)
|+++++|++++.|. ++.|++++.|++++.|.++.+++++.|++++.|.
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~ 49 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH 49 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe
Confidence 44555555555554 4566666666666666666777777777776664
No 133
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=1.1e-10 Score=99.45 Aligned_cols=112 Identities=17% Similarity=0.157 Sum_probs=74.6
Q ss_pred EEeechhhhhhhcccCCCceeccCc-EECCCcEEcCCcEECcCcEEC-----CCcEECCCCEECC---CcEECCCCEECC
Q 025890 4 YVSDIESRQQFQKWHNGGGIFHQSA-CIDSTVLIEVGAIVHSKAVLG-----ANVCIGSGTVVGP---AVTIGQSTNIGF 74 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~~~~-~i~~~~~I~~~a~I~~~~~i~-----~~~~Ig~~~~i~~---~~~ig~~~~I~~ 74 (246)
||+|+++.++|.++..+.....+.. ..+++..|.......|++++. .++.|+.||+|.+ +++|+.+++|++
T Consensus 243 Yw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G~V~nSVL~~~v~I~~ 322 (393)
T COG0448 243 YWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISGTVENSVLFRGVRIGK 322 (393)
T ss_pred hhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEeEEEeeEEecCeEECC
Confidence 9999999999987777555433322 223333443333333444333 3456677777764 447777888888
Q ss_pred ceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCC
Q 025890 75 NVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 136 (246)
Q Consensus 75 ~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 136 (246)
+|.|++|.|.++|.||++|.|. +++|.+++.|+++..|...
T Consensus 323 gs~i~~svim~~~~IG~~~~l~---------------------~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 323 GSVIENSVIMPDVEIGEGAVLR---------------------RAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred CCEEEeeEEeCCcEECCCCEEE---------------------EEEeCCCcEeCCCcEEcCC
Confidence 8888888888888888888885 7778888777777777654
No 134
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.12 E-value=8.4e-10 Score=78.66 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=53.5
Q ss_pred cEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeec
Q 025890 34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKK 113 (246)
Q Consensus 34 ~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 113 (246)
+.|++++.|. ++.|++++.|+ ++.|. ++.+++++.|++++.|.++.|++++.|++++.+.
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~----------------- 61 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR----------------- 61 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-----------------
Confidence 3455555553 45566666666 66663 5667777777777777777777777777777774
Q ss_pred CcccceEECCCcEECcccEEcCC
Q 025890 114 PQLLNARIGNHVEIGANSCIDRG 136 (246)
Q Consensus 114 ~~~~~~~Ig~~~~ig~~~~i~~~ 136 (246)
++.|++++.+++++.+...
T Consensus 62 ----~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 62 ----RAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred ----eEEECCCCEECCCCEECCC
Confidence 6777777777777766654
No 135
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.11 E-value=6e-10 Score=74.69 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=32.1
Q ss_pred cceEECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890 175 GSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF 210 (246)
Q Consensus 175 ~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~ 210 (246)
.++.|+++|+++.++++.+++.|++++.|++++.++
T Consensus 43 ~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v~ 78 (78)
T cd00208 43 NPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred CCcEECCCcEECCCCEEeCCCEECCCCEECcCcEeC
Confidence 348999999999999999999999999999998873
No 136
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.11 E-value=1.3e-09 Score=78.18 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=36.9
Q ss_pred EccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890 155 IGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 204 (246)
Q Consensus 155 i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~ 204 (246)
+...+.||++|+++.++.+..+++|+++|.|++++++.++ +.+++++.
T Consensus 53 ~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~ 100 (107)
T cd05825 53 ITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD--LPAWTVYA 100 (107)
T ss_pred ecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc--CCCCCEEE
Confidence 4466777888888888888888999999999999999875 45555543
No 137
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.10 E-value=1e-10 Score=96.66 Aligned_cols=120 Identities=21% Similarity=0.305 Sum_probs=74.4
Q ss_pred EEeechhhhhhhcccCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEE
Q 025890 4 YVSDIESRQQFQKWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCII 83 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~I 83 (246)
||.|+++++.|+..+. ...........-+.-+++.|..++.+.+-+.+|++|.|+++++||.+++|++++.|.++.+
T Consensus 226 fWmDIGqpkdf~~g~~---~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~i 302 (371)
T KOG1322|consen 226 FWMDIGQPKDFLTGFS---FYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTI 302 (371)
T ss_pred hhhhcCCHHHHHHHHH---HHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEE
Confidence 8999999999876644 1222222233333333344444444545556666667766777777777777777777777
Q ss_pred CCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECC
Q 025890 84 GDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDN 151 (246)
Q Consensus 84 g~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~ 151 (246)
-....+..++.+. .+.+|.++.||.+++|. +.+++|+++.+.+
T Consensus 303 l~~~~~~~~s~i~---------------------s~ivg~~~~IG~~~~id----~~a~lG~nV~V~d 345 (371)
T KOG1322|consen 303 LGADYYETHSEIS---------------------SSIVGWNVPIGIWARID----KNAVLGKNVIVAD 345 (371)
T ss_pred EccceechhHHHH---------------------hhhccccccccCceEEe----cccEeccceEEec
Confidence 7777777777775 66777777777776555 2344444444433
No 138
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.09 E-value=4.9e-10 Score=99.51 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.5
Q ss_pred EEeechhhhhhhcccC
Q 025890 4 YVSDIESRQQFQKWHN 19 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (246)
||.|+++.+.|.+...
T Consensus 255 ~w~digt~~~y~~an~ 270 (429)
T PRK02862 255 YWEDIGTIEAFYEANL 270 (429)
T ss_pred EEEeCCCHHHHHHHHH
Confidence 7999999999887654
No 139
>PRK10191 putative acyl transferase; Provisional
Probab=99.09 E-value=6.8e-10 Score=83.63 Aligned_cols=86 Identities=27% Similarity=0.337 Sum_probs=50.0
Q ss_pred eeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCcee
Q 025890 23 IFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGF 102 (246)
Q Consensus 23 ~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~ 102 (246)
.+++++.+++++.|+++ .++.|+++++||++|.|+.+++|++..... ...+.||++|.|++++.+..
T Consensus 43 ~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~----~~~~~IGd~~~Ig~~~~I~~----- 109 (146)
T PRK10191 43 EIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGADN----MACPHIGNGVELGANVIILG----- 109 (146)
T ss_pred ccCCCCEECCCeEECCC----CeEEECCCcEECCCCEECCCCEECCCCcCC----CCCCEECCCcEEcCCCEEeC-----
Confidence 34444444444444432 034444445555544444444444332111 13457888888888888864
Q ss_pred EEcCCCceeecCcccceEECCCcEECcccEEcCC
Q 025890 103 FVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRG 136 (246)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 136 (246)
++.||+++.+++++++...
T Consensus 110 ---------------~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 110 ---------------DITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred ---------------CCEECCCCEECCCCEECCc
Confidence 7889999999999988853
No 140
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.08 E-value=6.2e-10 Score=81.66 Aligned_cols=55 Identities=27% Similarity=0.330 Sum_probs=29.3
Q ss_pred cEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890 34 VLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 34 ~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 96 (246)
+.|.+.|.+--.+.|.++++|+++|++++.+++=..+ .+.+||+++.|.+.+.|.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~a--------GPI~iGEnniiEEyA~i~ 63 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATA--------GPIYIGENNIIEEYAVIR 63 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEccc--------CCEEEccCchhhhHHHHH
Confidence 3444555554445555666666666666555442211 345566666666665554
No 141
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.07 E-value=1.6e-09 Score=95.73 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=66.9
Q ss_pred EEeechhhhhhhcccCCCce------e-ccC------cEECCCcE-EcCC--cEECcCcEECCCcEECCCCEECCCcEEC
Q 025890 4 YVSDIESRQQFQKWHNGGGI------F-HQS------ACIDSTVL-IEVG--AIVHSKAVLGANVCIGSGTVVGPAVTIG 67 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~------i-~~~------~~i~~~~~-I~~~--a~I~~~~~i~~~~~Ig~~~~i~~~~~ig 67 (246)
||.|+++.+.|.+....... + .+. ....+++. ++.. +.+.+++.|++++.|+ ++.|. +++|+
T Consensus 258 ~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg 335 (407)
T PRK00844 258 YWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLS 335 (407)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEEC
Confidence 79999999998775432110 0 000 00111222 2221 1233456666666666 66665 47777
Q ss_pred CCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcC
Q 025890 68 QSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 135 (246)
Q Consensus 68 ~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~ 135 (246)
++|.|+++|.|.+++|+++|.|+++|.|. +++|++++.|++++++..
T Consensus 336 ~~~~I~~~~~i~~sii~~~~~i~~~~~i~---------------------~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 336 PNVVVESGAEVEDSVLMDGVRIGRGAVVR---------------------RAILDKNVVVPPGATIGV 382 (407)
T ss_pred CCCEECCCCEEeeeEECCCCEECCCCEEE---------------------eeEECCCCEECCCCEECC
Confidence 77777777777777788888888877775 677777777777776653
No 142
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.07 E-value=1.9e-09 Score=76.44 Aligned_cols=62 Identities=35% Similarity=0.493 Sum_probs=34.2
Q ss_pred EECCCCEECCCcEECCCCEECCceE---EeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECc
Q 025890 53 CIGSGTVVGPAVTIGQSTNIGFNVA---LSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 129 (246)
Q Consensus 53 ~Ig~~~~i~~~~~ig~~~~I~~~~~---I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~ 129 (246)
.|++++.|++++.|+.++.|++++. +..+.|+++|.|+.++.+.. .+.||+++.+++
T Consensus 24 ~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~--------------------~~~Ig~~~~i~~ 83 (101)
T cd03354 24 VIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG--------------------NITIGDNVKIGA 83 (101)
T ss_pred EECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC--------------------cCEECCCCEECC
Confidence 3344444444444444444444443 45566667777766666653 456666666666
Q ss_pred ccEEc
Q 025890 130 NSCID 134 (246)
Q Consensus 130 ~~~i~ 134 (246)
++.+.
T Consensus 84 ~~~i~ 88 (101)
T cd03354 84 NAVVT 88 (101)
T ss_pred CCEEC
Confidence 66655
No 143
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.05 E-value=4e-09 Score=81.28 Aligned_cols=47 Identities=13% Similarity=0.367 Sum_probs=37.8
Q ss_pred cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890 157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 205 (246)
Q Consensus 157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~ 205 (246)
....||++|+++.++.+.++++||++|+|+++++|.++ +++++++..
T Consensus 112 ~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d--vp~~~~~~G 158 (162)
T TIGR01172 112 RHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD--VPPGATVVG 158 (162)
T ss_pred cCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC--CCCCCEEEe
Confidence 44677777778788888889999999999999999987 567776543
No 144
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.05 E-value=2e-09 Score=93.87 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=12.7
Q ss_pred EEeechhhhhhhccc
Q 025890 4 YVSDIESRQQFQKWH 18 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (246)
||.|+++++.|.+..
T Consensus 235 ~w~dIgt~~~l~~a~ 249 (369)
T TIGR02092 235 YLANINSVKSYYKAN 249 (369)
T ss_pred ceeEcCCHHHHHHHH
Confidence 799999999987665
No 145
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.04 E-value=1.8e-09 Score=72.34 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=21.4
Q ss_pred ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEE
Q 025890 80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCI 133 (246)
Q Consensus 80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i 133 (246)
+..|+++|.++.++.+.. ++.|++++.+++++.+
T Consensus 44 ~~~ig~~~~v~~~~~i~~--------------------~~~ig~~~~i~~~s~v 77 (78)
T cd00208 44 PTIIGDNVEIGANAVIHG--------------------GVKIGDNAVIGAGAVV 77 (78)
T ss_pred CcEECCCcEECCCCEEeC--------------------CCEECCCCEECcCcEe
Confidence 356666666666666643 5667777777666654
No 146
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.02 E-value=4.3e-09 Score=75.02 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=52.6
Q ss_pred cEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECccc
Q 025890 52 VCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANS 131 (246)
Q Consensus 52 ~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~ 131 (246)
+.|++++.|. ++.||++|.|+ ++.|.++.+++++.|++++.|. ++.|++++.|++++
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~---------------------~siI~~~~~Ig~~~ 58 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVE---------------------DSVIMPNVGIGRNA 58 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEE---------------------EeEEcCCCEECCCC
Confidence 3455555553 56677778887 7888888888888888888885 77888888888887
Q ss_pred EEcCCCccCeEECCCCEECCCCEE
Q 025890 132 CIDRGSWRDTVIGDHSKIDNLVQI 155 (246)
Q Consensus 132 ~i~~~~~~~~~ig~~~~v~~~~~i 155 (246)
.+. ++.+++++.+++++.+
T Consensus 59 ~i~-----~siig~~~~Ig~~~~v 77 (104)
T cd04651 59 VIR-----RAIIDKNVVIPDGVVI 77 (104)
T ss_pred EEE-----eEEECCCCEECCCCEE
Confidence 775 2455554444444444
No 147
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.02 E-value=4.2e-09 Score=74.58 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=57.4
Q ss_pred cccCCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEEC---CCcEECCCCEECCceEEeccEECCCcEECCC
Q 025890 16 KWHNGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG---PAVTIGQSTNIGFNVALSNCIIGDSCIIHNG 92 (246)
Q Consensus 16 ~~~~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~---~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~ 92 (246)
-++.....+.+++.+.+++.|++++.|++.+.|.+++.|+++|.|+ +++.|.+++.+.+++.|.++.||+++.|+++
T Consensus 12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~ 91 (101)
T cd05635 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGGEVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAG 91 (101)
T ss_pred EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECCEECccEEcCCCEecCcCEEeeeEECCCCEECCC
Confidence 3444556666666676777777777777777777777777777776 5667777777777777777788888888777
Q ss_pred eEEC
Q 025890 93 VCIG 96 (246)
Q Consensus 93 ~~i~ 96 (246)
+...
T Consensus 92 ~~~~ 95 (101)
T cd05635 92 TNNS 95 (101)
T ss_pred ceec
Confidence 7653
No 148
>PLN02739 serine acetyltransferase
Probab=99.02 E-value=5.5e-09 Score=88.18 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=69.8
Q ss_pred ccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCc
Q 025890 80 NCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNV 159 (246)
Q Consensus 80 ~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~ 159 (246)
++-|+..+.||.++.|.... .++||+++.||.++.|..+ +.+|....- .-.++.
T Consensus 205 GidI~p~A~IG~Gv~IdHg~------------------GVVIG~~avIGdnv~I~~g----VTIGg~g~~----~g~r~p 258 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGT------------------GVVIGETAVIGDRVSILHG----VTLGGTGKE----TGDRHP 258 (355)
T ss_pred CcccCCCccccCceEEecCC------------------ceEECCCCEECCCCEEcCC----ceeCCcCCc----CCCCCc
Confidence 34566666666666664311 5666666666666655532 333322100 002467
Q ss_pred EECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc-cCcEEeccC
Q 025890 160 AIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA-ANSCVFKDI 213 (246)
Q Consensus 160 ~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~-~~s~v~~~~ 213 (246)
+||++++|+.++.+.++++||+++.||++++|.++ +++++++. ..+.+.+..
T Consensus 259 ~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kD--VP~~stvvG~PAriI~~~ 311 (355)
T PLN02739 259 KIGDGALLGACVTILGNISIGAGAMVAAGSLVLKD--VPSHSMVAGNPAKLIGFV 311 (355)
T ss_pred EECCCCEEcCCCEEeCCeEECCCCEECCCCEECCC--CCCCcEEEecCCEEeccC
Confidence 89999999999999999999999999999999986 66777654 345554433
No 149
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.01 E-value=2.3e-09 Score=88.51 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=68.8
Q ss_pred eccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccC
Q 025890 79 SNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHN 158 (246)
Q Consensus 79 ~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~ 158 (246)
.++.|++.+.||+++.|+... .++||+++.||.++.|.. ++.+|....- .. ..+
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~------------------givIG~~a~IGdnv~I~~----~VtiGg~~~~---~~-~~~ 193 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHAT------------------GIVIGETAVIENDVSILQ----SVTLGGTGKT---SG-DRH 193 (273)
T ss_pred eeeEecCcceECCCeEEcCCC------------------CeEECCCCEECCCCEEcC----CcEEecCccc---CC-CcC
Confidence 455666777777777776421 567777777777776653 2444432110 00 134
Q ss_pred cEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEcc
Q 025890 159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAA 205 (246)
Q Consensus 159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~ 205 (246)
.+||++++|+.++.+.++++||++|.||++++|.++ |++++++..
T Consensus 194 p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~d--Vp~~~~v~G 238 (273)
T PRK11132 194 PKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQP--VPPHTTAAG 238 (273)
T ss_pred CEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEe
Confidence 688888888888888999999999999999999986 777776643
No 150
>PLN02694 serine O-acetyltransferase
Probab=98.99 E-value=3.7e-09 Score=87.50 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=7.6
Q ss_pred ceEECCCcEECcccEEc
Q 025890 118 NARIGNHVEIGANSCID 134 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~ 134 (246)
+.+||+++.|+++++|.
T Consensus 212 ~piIGd~V~IGagA~Il 228 (294)
T PLN02694 212 HPKIGDGVLIGAGATIL 228 (294)
T ss_pred ccEECCCeEECCeeEEC
Confidence 34444444444444443
No 151
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.98 E-value=8.5e-09 Score=73.85 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=31.2
Q ss_pred ccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEc
Q 025890 156 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLA 204 (246)
Q Consensus 156 ~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~ 204 (246)
..++.||++++++.++.+..++.|+++|+++.++.+.+ .+++++++.
T Consensus 56 ~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~ 102 (109)
T cd04647 56 SAPIVIGDDVWIGANVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA 102 (109)
T ss_pred cCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence 35566666666666666666777888888888877773 455665543
No 152
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.98 E-value=3.1e-09 Score=92.34 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.8
Q ss_pred EEeechhhhhhhcc
Q 025890 4 YVSDIESRQQFQKW 17 (246)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (246)
||.|+++.+.|.+.
T Consensus 240 ~w~digt~~~~~~a 253 (361)
T TIGR02091 240 YWRDVGTIDSFWEA 253 (361)
T ss_pred EEEECCCHHHHHHH
Confidence 79999999987655
No 153
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.96 E-value=6.4e-09 Score=92.62 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=33.1
Q ss_pred CCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEE
Q 025890 32 STVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCII 83 (246)
Q Consensus 32 ~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~I 83 (246)
+++.+ .++.|.+ +.|+++|+|+ +|.|. +++|+++|.|+++|.|.++++
T Consensus 304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii 351 (436)
T PLN02241 304 PPSKI-EDCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVM 351 (436)
T ss_pred CCcEe-cCCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEE
Confidence 44444 3455554 6777778777 77774 578888888888888866665
No 154
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.96 E-value=1e-08 Score=82.84 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=18.8
Q ss_pred eEECCCeEECcCcEECCCcEECCCCEEccCcEEeccCCC
Q 025890 177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFKDITE 215 (246)
Q Consensus 177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~~~~~ 215 (246)
+.|||+|+||+++.+..|+.+|++|+|++|.+++++.|.
T Consensus 183 v~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 183 VIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred eEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 444444444444444444444444444444444444443
No 155
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.95 E-value=6.1e-09 Score=92.43 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=13.8
Q ss_pred EEeechhhhhhhcccC
Q 025890 4 YVSDIESRQQFQKWHN 19 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (246)
||.|+++.+.|.+...
T Consensus 269 yw~digt~~~y~~an~ 284 (425)
T PRK00725 269 YWRDVGTLDAYWQANL 284 (425)
T ss_pred eEEECCCHHHHHHHHH
Confidence 8999999999987654
No 156
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.95 E-value=9.1e-09 Score=89.20 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=5.2
Q ss_pred EECCCcEECCCeEE
Q 025890 82 IIGDSCIIHNGVCI 95 (246)
Q Consensus 82 ~Ig~~~~I~~~~~i 95 (246)
.|+++|.|+++|.|
T Consensus 284 ~i~~~~~Ig~~~~i 297 (353)
T TIGR01208 284 YIGPYTSIGEGVVI 297 (353)
T ss_pred EECCCCEECCCCEE
Confidence 33333333333333
No 157
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.9e-09 Score=85.26 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=45.0
Q ss_pred ECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEE
Q 025890 48 LGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEI 127 (246)
Q Consensus 48 i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i 127 (246)
|.+.+++.+.+.|++|+.||.+++||+++.|..++|-+++.|.+++++- +++||..+.|
T Consensus 291 IhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl---------------------~sIigw~s~i 349 (407)
T KOG1460|consen 291 IHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVL---------------------HSIIGWKSSI 349 (407)
T ss_pred EcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEE---------------------eeeecccccc
Confidence 3333333333334444444555566666666777788888888887774 8888998888
Q ss_pred CcccEEcCC
Q 025890 128 GANSCIDRG 136 (246)
Q Consensus 128 g~~~~i~~~ 136 (246)
|.++.++.-
T Consensus 350 GrWaRVe~~ 358 (407)
T KOG1460|consen 350 GRWARVEGI 358 (407)
T ss_pred cceeeeccc
Confidence 888888764
No 158
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.93 E-value=1.1e-08 Score=89.54 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=7.4
Q ss_pred ceEECCCcEECcccEE
Q 025890 118 NARIGNHVEIGANSCI 133 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i 133 (246)
+++||+++.|+++|.|
T Consensus 308 ~s~ig~~~~I~~~~~i 323 (380)
T PRK05293 308 HSVLFQGVQVGEGSVV 323 (380)
T ss_pred ceEEcCCCEECCCCEE
Confidence 3444444444444444
No 159
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.90 E-value=2.7e-09 Score=78.31 Aligned_cols=136 Identities=20% Similarity=0.213 Sum_probs=72.7
Q ss_pred cEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcE
Q 025890 81 CIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVA 160 (246)
Q Consensus 81 ~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~ 160 (246)
.+|+++|.+++.+.+-. ..+.++||+++.|.++++|... ..++..-..+- ..-.
T Consensus 27 vti~~gcVvHP~a~~iA-----------------~aGPI~iGEnniiEEyA~i~n~------~~~~~~~d~~~---~pmi 80 (190)
T KOG4042|consen 27 VTIKEGCVVHPFAVFIA-----------------TAGPIYIGENNIIEEYAVIRNR------LEPGAVWDSDG---QPMI 80 (190)
T ss_pred eEecCCcEecceEEEEc-----------------ccCCEEEccCchhhhHHHHHhh------cCCCCccCCCC---CeEE
Confidence 44456666666666543 2348999999999999877641 11111111100 1223
Q ss_pred ECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEEe--ccCCCCCeEEccCc-------------h
Q 025890 161 IGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF--KDITEPGDYGGFPA-------------V 225 (246)
Q Consensus 161 Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~--~~~~~~~~~~g~p~-------------~ 225 (246)
||.+.+..-++.... .++||+-.|+..+++.+++.+.++|+|++...+. +++|++..++|... -
T Consensus 81 IGt~NvFeVgc~s~A-~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYga~~L~R~~~~~~~~qtl 159 (190)
T KOG4042|consen 81 IGTWNVFEVGCKSSA-KKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYGATNLSRTTKTPNMTQTL 159 (190)
T ss_pred EeccceEEeechhhh-hhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceEEccccccceecCCCCCccc
Confidence 333333333332222 4566666666666666666666666666665554 45666665554321 2
Q ss_pred hhHHHHHHhhhhhhcccc
Q 025890 226 PIHEWRRQVANQIRSSKK 243 (246)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ 243 (246)
.+++|++.+++.-.|.++
T Consensus 160 QidFLrKiLPnYHHL~k~ 177 (190)
T KOG4042|consen 160 QIDFLRKILPNYHHLYKK 177 (190)
T ss_pred hHHHHHHHccchhhhhcc
Confidence 355666666666555543
No 160
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.89 E-value=4.4e-08 Score=73.98 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=39.8
Q ss_pred ccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccC
Q 025890 156 GHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAAN 206 (246)
Q Consensus 156 ~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~ 206 (246)
..++.||++|+++.++.+..+++||++|.|+++++|.++ ++++++++..
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~ 119 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGN 119 (145)
T ss_pred cCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEec
Confidence 467788888888888888889999999999999999986 5677766544
No 161
>PLN02357 serine acetyltransferase
Probab=98.87 E-value=2.1e-08 Score=85.34 Aligned_cols=85 Identities=27% Similarity=0.406 Sum_probs=48.8
Q ss_pred EECCCcEEcCCcEECc--CcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcC
Q 025890 29 CIDSTVLIEVGAIVHS--KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDE 106 (246)
Q Consensus 29 ~i~~~~~I~~~a~I~~--~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~ 106 (246)
.|.+++.||+++.|.. +++|+++++||++|.|..+++||..- ...-...++||++|.|+.++.|..
T Consensus 228 dI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g---~~~g~~~piIGd~V~IGagA~Ilg--------- 295 (360)
T PLN02357 228 DIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTG---KQSGDRHPKIGDGVLIGAGTCILG--------- 295 (360)
T ss_pred eeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCcc---ccCCccCceeCCCeEECCceEEEC---------
Confidence 3444444444444442 23444444444444444444443320 111123578888888888877753
Q ss_pred CCceeecCcccceEECCCcEECcccEEcCC
Q 025890 107 HGNMLKKPQLLNARIGNHVEIGANSCIDRG 136 (246)
Q Consensus 107 ~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~ 136 (246)
++.||+++.|++++++...
T Consensus 296 -----------gV~IGdga~IGAgSVV~~d 314 (360)
T PLN02357 296 -----------NITIGEGAKIGAGSVVLKD 314 (360)
T ss_pred -----------CeEECCCCEECCCCEECcc
Confidence 7889999999999988853
No 162
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=3e-08 Score=85.94 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=16.1
Q ss_pred CcEECCCCEECCceEEeccEECCCcEECC
Q 025890 63 AVTIGQSTNIGFNVALSNCIIGDSCIIHN 91 (246)
Q Consensus 63 ~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~ 91 (246)
+++|.++|.|++++.|.+++|+++|.|++
T Consensus 296 ~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 296 NSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred eeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 34445555555555555555555555555
No 163
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.1e-09 Score=86.88 Aligned_cols=73 Identities=32% Similarity=0.535 Sum_probs=57.1
Q ss_pred cEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccce
Q 025890 40 AIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNA 119 (246)
Q Consensus 40 a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 119 (246)
+.++..+.++++++|++++.|. .++||.+|.||+.++|.++.+.+++.|++++.|. ++
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~Ie---------------------ns 386 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIE---------------------NS 386 (433)
T ss_pred eccchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCccee---------------------cc
Confidence 4445555566666677666663 6788888888888888888888999999988886 88
Q ss_pred EECCCcEECcccEEc
Q 025890 120 RIGNHVEIGANSCID 134 (246)
Q Consensus 120 ~Ig~~~~ig~~~~i~ 134 (246)
+||.++.|++++.+.
T Consensus 387 IIg~gA~Ig~gs~L~ 401 (433)
T KOG1462|consen 387 IIGMGAQIGSGSKLK 401 (433)
T ss_pred eecccceecCCCeee
Confidence 888888888888775
No 164
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.81 E-value=3.1e-08 Score=88.09 Aligned_cols=37 Identities=8% Similarity=0.248 Sum_probs=19.2
Q ss_pred cEECCCcEECCCCEECCCcEECCCCEECCceEEeccEEC
Q 025890 46 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIG 84 (246)
Q Consensus 46 ~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig 84 (246)
+.|++++.| +++.|. +++|+++|.|++++.|.+++|+
T Consensus 309 ~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~ 345 (429)
T PRK02862 309 SIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVM 345 (429)
T ss_pred CEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEe
Confidence 455555555 455553 3455555555555555555553
No 165
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.80 E-value=2.4e-08 Score=78.68 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=80.5
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSI 197 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~i 197 (246)
..++++.+.+++++.|.. ..++.++.|+.+|.+.+++...++++||+++.|.+..++..+..+
T Consensus 33 ~~V~g~~iivge~v~i~G-----------------diva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdi 95 (277)
T COG4801 33 YGVVGEEIIVGERVRIYG-----------------DIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDI 95 (277)
T ss_pred eeeeeeeEEeccCcEEee-----------------eEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEeccccc
Confidence 445556666666655553 244578888888888888888899999999999999999999999
Q ss_pred CCCCEEccCcEEeccCCCCCeEEccCchhhHHHHHHhhhhhhccc
Q 025890 198 ASKVRLAANSCVFKDITEPGDYGGFPAVPIHEWRRQVANQIRSSK 242 (246)
Q Consensus 198 g~~~~v~~~s~v~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 242 (246)
|+++.|..+ ++ ..++++..||...+..+.-+...+.++.+
T Consensus 96 g~dV~Iegg-fv----a~g~Ivirnpvpvl~fl~lyl~vllrlGr 135 (277)
T COG4801 96 GADVIIEGG-FV----AKGWIVIRNPVPVLEFLFLYLSVLLRLGR 135 (277)
T ss_pred ccceEEecC-ee----ecceEEEcCCccEEEEEhhHHHHHHhccc
Confidence 999988766 33 24667889999998888888888888764
No 166
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.77 E-value=1.1e-07 Score=73.64 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=37.5
Q ss_pred cCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcEECCCCEEccCcEE
Q 025890 157 HNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVSIASKVRLAANSCV 209 (246)
Q Consensus 157 ~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v 209 (246)
.+-+||+++.|+.++.+.++++|||++.||+|++|.+++.- .-++++-.+.+
T Consensus 118 RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~-~~tvvGvPAri 169 (194)
T COG1045 118 RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPP-NATVVGVPARV 169 (194)
T ss_pred CCCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCC-CceEecCcceE
Confidence 44566777777777777889999999999999999999653 22233444433
No 167
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.76 E-value=2.1e-08 Score=73.12 Aligned_cols=64 Identities=31% Similarity=0.412 Sum_probs=40.1
Q ss_pred CcEECCCCEECCCcEECCCCEE-CCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECc
Q 025890 51 NVCIGSGTVVGPAVTIGQSTNI-GFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGA 129 (246)
Q Consensus 51 ~~~Ig~~~~i~~~~~ig~~~~I-~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~ 129 (246)
+++||..|++..+++|.+.-.+ ..+...-+..||++++|+++|++. .+.||.++.+|.
T Consensus 54 nVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVn---------------------AAqIgsyVh~Gk 112 (184)
T KOG3121|consen 54 NVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVN---------------------AAQIGSYVHLGK 112 (184)
T ss_pred cceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEee---------------------hhhheeeeEecc
Confidence 3444444444444444332211 222223467899999999999996 678888888888
Q ss_pred ccEEcC
Q 025890 130 NSCIDR 135 (246)
Q Consensus 130 ~~~i~~ 135 (246)
+++|++
T Consensus 113 naviGr 118 (184)
T KOG3121|consen 113 NAVIGR 118 (184)
T ss_pred ceeEcC
Confidence 876653
No 168
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=6.4e-08 Score=81.86 Aligned_cols=84 Identities=26% Similarity=0.482 Sum_probs=53.0
Q ss_pred CEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcCCC
Q 025890 58 TVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDRGS 137 (246)
Q Consensus 58 ~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~ 137 (246)
..++..++++++|.|++++.|..++||.+|.||+.+.+. ++.+=+++.++.++.|+
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~---------------------nSilm~nV~vg~G~~Ie--- 384 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVA---------------------NSILMDNVVVGDGVNIE--- 384 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEE---------------------eeEeecCcEecCCccee---
Confidence 334445555666666666677777777777777777775 66667777777777665
Q ss_pred ccCeEECCCCEECCCCEEccCcEECCCcEEc
Q 025890 138 WRDTVIGDHSKIDNLVQIGHNVAIGKSCMLC 168 (246)
Q Consensus 138 ~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~ 168 (246)
++.||.++.|++++.+ .+|.||.+-++.
T Consensus 385 --nsIIg~gA~Ig~gs~L-~nC~Ig~~yvVe 412 (433)
T KOG1462|consen 385 --NSIIGMGAQIGSGSKL-KNCIIGPGYVVE 412 (433)
T ss_pred --cceecccceecCCCee-eeeEecCCcEEc
Confidence 4566666666665555 555555444443
No 169
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.69 E-value=1.3e-07 Score=83.59 Aligned_cols=69 Identities=26% Similarity=0.446 Sum_probs=59.6
Q ss_pred cCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECC
Q 025890 26 QSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQ 97 (246)
Q Consensus 26 ~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~ 97 (246)
+++.+++++.|+ ++.|. ++.|+++|+|+++|.|. +++|+++|.|+++|.|.+++|++++.|++++.++.
T Consensus 314 ~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 314 QDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred EeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 456777777777 77776 48889999999999996 78899999999999999999999999999999975
No 170
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.1e-07 Score=77.91 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=52.3
Q ss_pred CcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCC
Q 025890 27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 98 (246)
Q Consensus 27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~ 98 (246)
+++|.+.+++.+.|.|+||+.|+++++||+|+.+. .++|-+++.|.+|+.+-+++||-++.||..+.+...
T Consensus 288 dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~-~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 288 DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLR-ESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred eeEEcCcceeCCccccCCCceecCCceecCCceee-eeeeccCcEeeccceEEeeeecccccccceeeeccc
Confidence 45555555555556666666666666666666664 456678899999999999999999999999999754
No 171
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.64 E-value=2.7e-07 Score=72.89 Aligned_cols=87 Identities=24% Similarity=0.277 Sum_probs=55.7
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCC-CEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNL-VQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS 196 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~-~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ 196 (246)
...||+++.+++++.+....+ ..+....... ......+.||++++|+.++++..+++||++++||+++++.++
T Consensus 87 ~i~ig~~~~i~~~v~i~~~~h----~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkd-- 160 (190)
T COG0110 87 GITIGDNVVVGPNVTIYTNSH----PGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKD-- 160 (190)
T ss_pred CeEECCCceECCCcEEecCCC----CCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCc--
Confidence 455666666666666654311 1111111111 233356888888888888888999999999999999999995
Q ss_pred ECCCCEEccC-cEEe
Q 025890 197 IASKVRLAAN-SCVF 210 (246)
Q Consensus 197 ig~~~~v~~~-s~v~ 210 (246)
++++++++.. +.+.
T Consensus 161 vp~~~iv~G~Pa~vi 175 (190)
T COG0110 161 VPPYGIVAGNPARVI 175 (190)
T ss_pred cCCCeEEeCCcceEE
Confidence 5677765443 4444
No 172
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.55 E-value=6.5e-07 Score=79.58 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=56.6
Q ss_pred CcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCC
Q 025890 45 KAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNH 124 (246)
Q Consensus 45 ~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 124 (246)
+++|+++|.| ++|.|. +++|+++|.|+++|.|.+++|+++|.|+++|.|. +++|+++
T Consensus 327 ~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~---------------------~~ii~~~ 383 (425)
T PRK00725 327 NSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR---------------------RCVIDRG 383 (425)
T ss_pred eCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEe---------------------eEEECCC
Confidence 5677777777 677775 6888888888888888888888888888888885 7888888
Q ss_pred cEECcccEEcCCC
Q 025890 125 VEIGANSCIDRGS 137 (246)
Q Consensus 125 ~~ig~~~~i~~~~ 137 (246)
+.|++++.|....
T Consensus 384 ~~i~~~~~i~~~~ 396 (425)
T PRK00725 384 CVIPEGMVIGEDP 396 (425)
T ss_pred CEECCCCEECCCC
Confidence 8888888887654
No 173
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.49 E-value=2e-07 Score=77.44 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=74.0
Q ss_pred CCCceeccCcEECCCcEEcCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEECCC
Q 025890 19 NGGGIFHQSACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIGQD 98 (246)
Q Consensus 19 ~~~~~i~~~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~ 98 (246)
..+..+..+..+++-+.+|++|.|++++.||++++|++|+.|.+ +.+-.+.+++.++.|..+.+|-++.||.++.|..
T Consensus 256 ~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~-s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~- 333 (371)
T KOG1322|consen 256 LPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQD-STILGADYYETHSEISSSIVGWNVPIGIWARIDK- 333 (371)
T ss_pred cCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEe-eEEEccceechhHHHHhhhccccccccCceEEec-
Confidence 33455666677777788888888888888888888888888864 4444567888888899999999999999998874
Q ss_pred CceeEEcCCCceeecCcccceEECCCcEECcccEEcC
Q 025890 99 GFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 135 (246)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~ 135 (246)
.++||+++.|...-.++.
T Consensus 334 -------------------~a~lG~nV~V~d~~~vn~ 351 (371)
T KOG1322|consen 334 -------------------NAVLGKNVIVADEDYVNE 351 (371)
T ss_pred -------------------ccEeccceEEeccccccc
Confidence 788888888877665554
No 174
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.47 E-value=1e-06 Score=76.85 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=7.7
Q ss_pred EeccEECCCcEECCCeEE
Q 025890 78 LSNCIIGDSCIIHNGVCI 95 (246)
Q Consensus 78 I~~~~Ig~~~~I~~~~~i 95 (246)
|.++.|+++|.|+++|.|
T Consensus 302 v~~s~i~~~~~I~~~~~i 319 (369)
T TIGR02092 302 VENSILSRGVHVGKDALI 319 (369)
T ss_pred EeCCEECCCCEECCCCEE
Confidence 334444444444444444
No 175
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.46 E-value=1.6e-06 Score=75.46 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=8.1
Q ss_pred EeccEECCCcEECCCeEE
Q 025890 78 LSNCIIGDSCIIHNGVCI 95 (246)
Q Consensus 78 I~~~~Ig~~~~I~~~~~i 95 (246)
+.++.|+++|.|+++|.|
T Consensus 308 v~~s~i~~~~~I~~~~~i 325 (361)
T TIGR02091 308 VSHSVLGIRVRIGSGSTV 325 (361)
T ss_pred EEccEECCCCEECCCCEE
Confidence 334444444444444444
No 176
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.40 E-value=6.3e-07 Score=49.94 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=23.9
Q ss_pred ceEECCCeEECcCcEECCCcEECCCCEEccCcEEec
Q 025890 176 SATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVFK 211 (246)
Q Consensus 176 ~~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~~ 211 (246)
+++||++|+|+.++++ ++.|++++.|++++++++
T Consensus 1 pv~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp TEEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred CeEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 3678888888888888 589999999999888764
No 177
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.37 E-value=1.4e-06 Score=68.57 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=47.4
Q ss_pred ceEECCCcEECcccEEcCCCccCeEECCCCEECCCCEEccCcEECCCcEEccceeEecceEECCCeEECcCcEECCCcE
Q 025890 118 NARIGNHVEIGANSCIDRGSWRDTVIGDHSKIDNLVQIGHNVAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAVRDHVS 196 (246)
Q Consensus 118 ~~~Ig~~~~ig~~~~i~~~~~~~~~ig~~~~v~~~~~i~~~~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v~~~~~ 196 (246)
..+||+-+.+|.++.+.. ++.+|..- ..+--.+. .||++++|+.++.+.+++.||+++.|+++++|.+++.
T Consensus 168 gvvigeTAvvg~~vSilH----~Vtlggtg---k~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP 238 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILH----PVTLGGTG---KGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVP 238 (269)
T ss_pred ceeecceeEeccceeeec----ceeecccc---ccccccCC-cccCCeEEccccEEeCCeeECCCcEEeccceEEeccC
Confidence 445555555555555442 23333211 11122233 8889999999999999999999999999999999853
No 178
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.23 E-value=5.3e-05 Score=60.14 Aligned_cols=71 Identities=15% Similarity=0.089 Sum_probs=43.1
Q ss_pred cCCcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEE-eccEECCCcEECCCeEECCC--CceeEEcCCC
Q 025890 37 EVGAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVAL-SNCIIGDSCIIHNGVCIGQD--GFGFFVDEHG 108 (246)
Q Consensus 37 ~~~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I-~~~~Ig~~~~I~~~~~i~~~--~~~~~~~~~~ 108 (246)
++++.|.+... ..+++|+.+|-+.+|+....+++||+.+.| ...++..+-.|++++.|... +.++..++|.
T Consensus 43 ge~v~i~Gdiv-a~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Ieggfva~g~Ivirnp 116 (277)
T COG4801 43 GERVRIYGDIV-AKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGGFVAKGWIVIRNP 116 (277)
T ss_pred ccCcEEeeeEE-ecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecCeeecceEEEcCC
Confidence 44444443322 366777777888778778888888888777 44555555566666666542 3344444444
No 179
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=8.9e-06 Score=69.82 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=30.5
Q ss_pred CcEECcCcEECCCcEECCCCEECCCcEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890 39 GAIVHSKAVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 39 ~a~I~~~~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 96 (246)
+..|.......+.+++.+++.+ .++.++++|.|.. .|.+|.|+.++.|+.+|.|.
T Consensus 273 ~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~ 327 (393)
T COG0448 273 NWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIE 327 (393)
T ss_pred CCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEE
Confidence 3344444444455555555554 3555555555554 45666666666666666664
No 180
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=98.10 E-value=3.5e-06 Score=47.65 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred eEECCCeEECcCcEECCCcEECCCCEEccCcEEe
Q 025890 177 ATIGDYVTLGGRVAVRDHVSIASKVRLAANSCVF 210 (246)
Q Consensus 177 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~v~~~s~v~ 210 (246)
++|+++++|+.++.|.+++.|++++.|++++.+.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~ 35 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIG 35 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEEC
Confidence 4566666666666666666666666666666653
No 181
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.86 E-value=2e-05 Score=44.46 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=18.8
Q ss_pred cEECCCcEEccceeEecceEECCCeEECcCcEE
Q 025890 159 VAIGKSCMLCGQVGIAGSATIGDYVTLGGRVAV 191 (246)
Q Consensus 159 ~~Ig~~~~i~~~~~~~~~~~Ig~~~~Ig~~~~v 191 (246)
++||+++++++++.+.++++||++|.|+++++|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 445555555555555566666666666666655
No 182
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.66 E-value=7.1e-05 Score=41.61 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=9.0
Q ss_pred eEECCCeEECcCcEEC
Q 025890 177 ATIGDYVTLGGRVAVR 192 (246)
Q Consensus 177 ~~Ig~~~~Ig~~~~v~ 192 (246)
+.|||+|.|++++++.
T Consensus 18 i~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 18 ITIGDGVIIGAGVVIT 33 (34)
T ss_dssp SEE-TTEEE-TTEEEE
T ss_pred CEEcCCCEECCCCEEc
Confidence 6667777666666653
No 183
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=89.88 E-value=0.97 Score=40.21 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=28.3
Q ss_pred EECCceEEeccEECCCcEECCCeEECCCCceeEEcCCCceeecCcccceEECCCcEECcccEEcC
Q 025890 71 NIGFNVALSNCIIGDSCIIHNGVCIGQDGFGFFVDEHGNMLKKPQLLNARIGNHVEIGANSCIDR 135 (246)
Q Consensus 71 ~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~ 135 (246)
.+.+.+.|.++.+..++.++++++|. ++.++.++.||++|+|..
T Consensus 275 ~~~~~~~VinSil~~~~~vg~~svIe---------------------~s~l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 275 DSEASSCVINSILEGGVSVGPGSVIE---------------------HSHLGGPWSIGSNCIISG 318 (414)
T ss_pred ccCCCeeEEEeEecCCceECCCCEEE---------------------eeecCCCCEECCCCEEEC
Confidence 44555566666666667777776665 666666666666666653
No 184
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=86.32 E-value=1.1 Score=39.89 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=15.6
Q ss_pred cEECCCCEECCceEEeccEECCCcEECCCeEEC
Q 025890 64 VTIGQSTNIGFNVALSNCIIGDSCIIHNGVCIG 96 (246)
Q Consensus 64 ~~ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~ 96 (246)
+++..++.++++++|+++.++.++.||++|.|.
T Consensus 285 Sil~~~~~vg~~svIe~s~l~~~~~IG~~cIis 317 (414)
T PF07959_consen 285 SILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS 317 (414)
T ss_pred eEecCCceECCCCEEEeeecCCCCEECCCCEEE
Confidence 334444444444444445555555555555543
No 185
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=60.17 E-value=25 Score=24.26 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=9.1
Q ss_pred cceEECCCeEECcCcEECCCc
Q 025890 175 GSATIGDYVTLGGRVAVRDHV 195 (246)
Q Consensus 175 ~~~~Ig~~~~Ig~~~~v~~~~ 195 (246)
+.+...+...|...+.+..++
T Consensus 62 G~v~a~~~v~i~~~~~v~G~i 82 (101)
T PF04519_consen 62 GNVEASGKVEIYGTARVEGDI 82 (101)
T ss_pred EEEEECceEEEeCCEEEEEEE
Confidence 334443444444444444433
No 186
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=49.35 E-value=8.1 Score=25.98 Aligned_cols=15 Identities=27% Similarity=0.100 Sum_probs=11.9
Q ss_pred cCCCCCeEEccCchh
Q 025890 212 DITEPGDYGGFPAVP 226 (246)
Q Consensus 212 ~~~~~~~~~g~p~~~ 226 (246)
|+||+.++.|+|++.
T Consensus 1 DVpPf~~~~G~~a~~ 15 (83)
T PF13720_consen 1 DVPPFMLVAGNPARI 15 (83)
T ss_dssp BB-TTEEEETTTTEE
T ss_pred CCCCeEEecCCccEE
Confidence 789999999999854
No 187
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=49.27 E-value=36 Score=33.88 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=15.0
Q ss_pred cEECCCcEECCCCEECCCcEECCCCEECCceEEecc
Q 025890 46 AVLGANVCIGSGTVVGPAVTIGQSTNIGFNVALSNC 81 (246)
Q Consensus 46 ~~i~~~~~Ig~~~~i~~~~~ig~~~~I~~~~~I~~~ 81 (246)
+++..++.++++...-+++.|+.+..|+++++|.++
T Consensus 337 s~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 337 AVLSGKLTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred eEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 333344444444222234444444444445544333
No 188
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=43.73 E-value=1.4e+02 Score=22.46 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=2.9
Q ss_pred EcCCcEEC
Q 025890 36 IEVGAIVH 43 (246)
Q Consensus 36 I~~~a~I~ 43 (246)
|+.++.+.
T Consensus 26 i~~g~~f~ 33 (146)
T COG1664 26 IGAGTTFK 33 (146)
T ss_pred EecCCEEE
Confidence 33333333
No 189
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=42.52 E-value=48 Score=33.04 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=21.1
Q ss_pred CcEECCCcEEcCCcEECcCcEECCCcEECCCCEEC
Q 025890 27 SACIDSTVLIEVGAIVHSKAVLGANVCIGSGTVVG 61 (246)
Q Consensus 27 ~~~i~~~~~I~~~a~I~~~~~i~~~~~Ig~~~~i~ 61 (246)
++.+..++.++++...-++++|+++++|+++|+|-
T Consensus 336 ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iis 370 (974)
T PRK13412 336 NAVLSGKLTAENATLWIENSHVGEGWKLASRSIIT 370 (974)
T ss_pred eeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEe
Confidence 45555666666655444556666666666666663
No 190
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=33.19 E-value=57 Score=29.07 Aligned_cols=9 Identities=11% Similarity=-0.001 Sum_probs=3.2
Q ss_pred CcEEcCCcE
Q 025890 33 TVLIEVGAI 41 (246)
Q Consensus 33 ~~~I~~~a~ 41 (246)
++.+|+++.
T Consensus 453 dV~FGknV~ 461 (498)
T KOG2638|consen 453 DVWFGKNVS 461 (498)
T ss_pred cEEeccceE
Confidence 333333333
No 191
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=30.93 E-value=7 Score=32.59 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=10.9
Q ss_pred EEeechhhhhhhcccC
Q 025890 4 YVSDIESRQQFQKWHN 19 (246)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (246)
.|.|.++.+.+.+...
T Consensus 218 ~WlDtGt~~slleA~~ 233 (286)
T COG1209 218 WWLDTGTPESLLEANN 233 (286)
T ss_pred eEEecCChhhHHHHHH
Confidence 5778888777655444
No 192
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=26.26 E-value=2.8e+02 Score=20.78 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=4.0
Q ss_pred cEECCCCEEC
Q 025890 52 VCIGSGTVVG 61 (246)
Q Consensus 52 ~~Ig~~~~i~ 61 (246)
+.|++++.+.
T Consensus 24 tli~~g~~f~ 33 (146)
T COG1664 24 TLIGAGTTFK 33 (146)
T ss_pred eEEecCCEEE
Confidence 3334444433
Done!