BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025891
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic
OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1
Length = 298
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 156/245 (63%), Positives = 187/245 (76%), Gaps = 10/245 (4%)
Query: 1 MAQSCAAALSSTAIF-AAFCNHFPA----ESHSSSLRFSPLRLRKMIVSSNRERKCEKFG 55
MA +C + +S+ F A F + P +S SL F PLR RK + + +
Sbjct: 1 MAHACVSTSASSLRFTAGFVSASPNGSSFDSPKLSLPFEPLRSRKTNKLVSDRKNWKNST 60
Query: 56 VKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNV 115
KA Y+ + + + +G+WSIR+DL+VPSSPY P YAQG+ GPPPM+ RFQ++
Sbjct: 61 PKAVYSGNLWTPEIPSP--QGVWSIRDDLQVPSSPYFPAYAQGQ---GPPPMVQERFQSI 115
Query: 116 LSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDT 175
+SQLFQ+RIIRCGG V+DDMANIIVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMAIFDT
Sbjct: 116 ISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDT 175
Query: 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQV 235
+RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ+DID+Q
Sbjct: 176 MRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQA 235
Query: 236 HIMAY 240
+ M +
Sbjct: 236 NEMLH 240
>sp|Q3MFR5|CLPP1_ANAVT ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3
SV=1
Length = 204
Score = 184 bits (467), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 106/127 (83%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RII G V+ ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IF
Sbjct: 18 DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++HIRPDV T+C GLAASMGAFLLSAGTKGKR SLP+SRIMIHQPLGGAQG +DI++
Sbjct: 78 DTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137
Query: 234 QVHIMAY 240
Q + Y
Sbjct: 138 QAREILY 144
>sp|A6SY74|CLPP_JANMA ATP-dependent Clp protease proteolytic subunit OS=Janthinobacterium
sp. (strain Marseille) GN=clpP PE=3 SV=1
Length = 210
Score = 184 bits (466), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/131 (64%), Positives = 109/131 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII GPV D MAN+IVAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 32 RAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKDISLYINSPGGSVSAGM 91
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+P+VST+C GLAASMGAFLL+AG KGKR+SLPNSRIMIHQPLGGAQG SD
Sbjct: 92 AIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMIHQPLGGAQGQASD 151
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 152 IEIQAREILYL 162
>sp|Q8YXH5|CLPP1_NOSS1 ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP1 PE=3 SV=1
Length = 204
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 105/127 (82%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RI+ G V+ ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IF
Sbjct: 18 DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++HIRPDV T+C GLAASMGAFLLSAG KGKR SLP+SRIMIHQPLGGAQG +DI++
Sbjct: 78 DTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137
Query: 234 QVHIMAY 240
Q + Y
Sbjct: 138 QAREILY 144
>sp|P54416|CLPP1_SYNY3 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpP1 PE=3 SV=1
Length = 198
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 104/131 (79%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RI+ G V D+ AN++VAQLL+L+A DP KDI +Y+NSPGGSV+AG+ IF
Sbjct: 17 DIYSRLLRERIVFLGQEVRDENANLVVAQLLFLEAEDPEKDIYLYINSPGGSVSAGLGIF 76
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT+ IRPDV T+C+GLAASMGAFLLSAG KGKR SLPNSRIMIHQPLGGAQG +DI++
Sbjct: 77 DTMNQIRPDVCTICIGLAASMGAFLLSAGAKGKRMSLPNSRIMIHQPLGGAQGQATDIEI 136
Query: 234 QVHIMAYFLTL 244
Q + Y L
Sbjct: 137 QAKEILYLKAL 147
>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1
Length = 200
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/121 (66%), Positives = 106/121 (87%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RII G V+DD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGMAI+
Sbjct: 17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIY 76
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++HI+PDVST+C+GLAASMGAFLL+ GTKGKR +LP++RIMIHQPLGGAQG +DI++
Sbjct: 77 DTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQGPATDIEI 136
Query: 234 Q 234
Q
Sbjct: 137 Q 137
>sp|Q8YQX8|CLPP2_NOSS1 ATP-dependent Clp protease proteolytic subunit 2 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpP2 PE=3 SV=1
Length = 232
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 103/128 (80%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RII G P++D +AN IVAQLL+LDA D KDI +Y+NSPGGSV AGMAI+
Sbjct: 45 DIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIY 104
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DTI+ IRPDV T+C GLAASMGAFLL+AGTKGKR SLP+SRIMIHQPLGGAQG DI++
Sbjct: 105 DTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEI 164
Query: 234 QVHIMAYF 241
Q + Y
Sbjct: 165 QAREILYI 172
>sp|Q3M726|CLPP3_ANAVT ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=clpP3 PE=3
SV=2
Length = 214
Score = 177 bits (450), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 103/128 (80%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RII G P++D +AN IVAQLL+LDA D KDI +Y+NSPGGSV AGMAI+
Sbjct: 27 DIYSRLLRERIIFLGTPIDDAVANTIVAQLLFLDAEDSEKDIQLYINSPGGSVYAGMAIY 86
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DTI+ IRPDV T+C GLAASMGAFLL+AGTKGKR SLP+SRIMIHQPLGGAQG DI++
Sbjct: 87 DTIQQIRPDVVTICFGLAASMGAFLLTAGTKGKRMSLPDSRIMIHQPLGGAQGQAIDIEI 146
Query: 234 QVHIMAYF 241
Q + Y
Sbjct: 147 QAREILYI 154
>sp|B2UX13|CLPP_CLOBA ATP-dependent Clp protease proteolytic subunit OS=Clostridium
botulinum (strain Alaska E43 / Type E3) GN=clpP PE=3
SV=1
Length = 199
Score = 177 bits (448), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 106/126 (84%), Gaps = 2/126 (1%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G V DD +N+IV+QLL+L++ DP+KDI +Y+NSPGGS+TAGM
Sbjct: 16 RSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGM 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG+AASMGAFLLS+G KGKRY+LPN+ IMIHQPLGG QG +D
Sbjct: 76 AIYDTMQYIKPDVSTICVGMAASMGAFLLSSGAKGKRYALPNAEIMIHQPLGGFQGQATD 135
Query: 231 IDLQVH 236
I Q+H
Sbjct: 136 I--QIH 139
>sp|Q5N665|CLPP1_SYNP6 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpP1 PE=3 SV=1
Length = 197
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 102/128 (79%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RII G PV D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV G+ IF
Sbjct: 17 DIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIF 76
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT+ HIRPDVSTVCVGLAASMGAFLL+AG KGKR SL +SRIMIHQPLGGAQG DI++
Sbjct: 77 DTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEI 136
Query: 234 QVHIMAYF 241
Q + + Y
Sbjct: 137 QANEILYI 144
>sp|P54415|CLPP1_SYNE7 ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus
elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1
Length = 197
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 102/128 (79%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RII G PV D+AN IVAQLL+L+A DP KDI +Y+NSPGGSV G+ IF
Sbjct: 17 DIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIF 76
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT+ HIRPDVSTVCVGLAASMGAFLL+AG KGKR SL +SRIMIHQPLGGAQG DI++
Sbjct: 77 DTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEI 136
Query: 234 QVHIMAYF 241
Q + + Y
Sbjct: 137 QANEILYI 144
>sp|Q3IF46|CLPP_PSEHT ATP-dependent Clp protease proteolytic subunit OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=clpP PE=3 SV=1
Length = 205
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/124 (64%), Positives = 104/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII GPVED+MAN+I+AQ+L+L++ +P+KDI +Y+NSPGGSVTAGM
Sbjct: 25 RSYDIYSRLLKERIIFLTGPVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGM 84
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+ I+PDVST+CVG AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG SD
Sbjct: 85 AIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASD 144
Query: 231 IDLQ 234
++
Sbjct: 145 FEIH 148
>sp|Q2JV68|CLPP2_SYNJA ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain JA-3-3Ab) GN=clpP2 PE=3 SV=1
Length = 200
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 105/121 (86%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + RII G V+DD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGMAI+
Sbjct: 17 DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIY 76
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT++HI+PDVST+C+GLAASMGAFLL+ G KGKR +LP++RIMIHQPLGGAQG +DI++
Sbjct: 77 DTMQHIQPDVSTICIGLAASMGAFLLAGGAKGKRIALPHARIMIHQPLGGAQGPATDIEI 136
Query: 234 Q 234
Q
Sbjct: 137 Q 137
>sp|Q0AWF0|CLPP_SYNWW ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas
wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3
SV=1
Length = 200
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 105/124 (84%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G ++D +AN+++AQLL+L+A DP+KDI +Y+NSPGGS+TAGM
Sbjct: 17 RSYDIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPGGSITAGM 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++IRPDVST+CVGLAASMGAFLL+AG KGKRY+LPN+ IMIHQP GG QG +D
Sbjct: 77 AIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATD 136
Query: 231 IDLQ 234
I++
Sbjct: 137 IEIH 140
>sp|Q88KJ0|CLPP_PSEPK ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain KT2440) GN=clpP PE=3 SV=1
Length = 213
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 115/154 (74%), Gaps = 6/154 (3%)
Query: 89 SPYIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQ 142
+ YI + + GG PM++ R ++ S+L + R+I GPVED MAN++VAQ
Sbjct: 4 NSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQ 63
Query: 143 LLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202
LL+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG
Sbjct: 64 LLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAG 123
Query: 203 TKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVH 236
KGKR+ LPNSR+MIHQPLGG QG +DI++
Sbjct: 124 AKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQ 157
>sp|A5W635|CLPP_PSEP1 ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=clpP PE=3 SV=1
Length = 213
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 115/154 (74%), Gaps = 6/154 (3%)
Query: 89 SPYIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQ 142
+ YI + + GG PM++ R ++ S+L + R+I GPVED MAN++VAQ
Sbjct: 4 NSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQ 63
Query: 143 LLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202
LL+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG
Sbjct: 64 LLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAG 123
Query: 203 TKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVH 236
KGKR+ LPNSR+MIHQPLGG QG +DI++
Sbjct: 124 AKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQ 157
>sp|Q8XYP7|CLPP_RALSO ATP-dependent Clp protease proteolytic subunit OS=Ralstonia
solanacearum (strain GMI1000) GN=clpP PE=3 SV=1
Length = 217
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 124/168 (73%), Gaps = 7/168 (4%)
Query: 80 IRNDLEVPSSPYIPTYAQGEQGGGPPPMLL---GRFQ---NVLSQLFQHRIIRCGGPVED 133
IRN+L + A QG G PM++ GR + ++ S+L + R+I G V D
Sbjct: 2 IRNEL-IDQLARTQASALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVND 60
Query: 134 DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS 193
AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AG+A++DT++ ++PDVST+C+G+AAS
Sbjct: 61 QTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAAS 120
Query: 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYF 241
MGAFLL+AG KGKRY+LPNSRIMIHQPLGGA+G SDI++Q + Y
Sbjct: 121 MGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQAREILYL 168
>sp|B2TPB9|CLPP_CLOBB ATP-dependent Clp protease proteolytic subunit OS=Clostridium
botulinum (strain Eklund 17B / Type B) GN=clpP PE=3 SV=1
Length = 199
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 105/126 (83%), Gaps = 2/126 (1%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G V DD +N+IV+QLL+L++ DP+KDI +Y+NSPGGS+TAGM
Sbjct: 16 RSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGM 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG+AASMGAFLLS+G GKRY+LPN+ IMIHQPLGG QG +D
Sbjct: 76 AIYDTMQYIKPDVSTICVGMAASMGAFLLSSGANGKRYALPNAEIMIHQPLGGFQGQATD 135
Query: 231 IDLQVH 236
I Q+H
Sbjct: 136 I--QIH 139
>sp|B1J692|CLPP_PSEPW ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain W619) GN=clpP PE=3 SV=1
Length = 213
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 115/154 (74%), Gaps = 6/154 (3%)
Query: 89 SPYIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQ 142
+ YI + + GG PM++ R ++ S+L + R+I GPVED MAN++VAQ
Sbjct: 4 NSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQ 63
Query: 143 LLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202
+L+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG
Sbjct: 64 MLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAG 123
Query: 203 TKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVH 236
KGKR+ LPNSR+MIHQPLGG QG +DI++
Sbjct: 124 AKGKRHCLPNSRVMIHQPLGGFQGQATDIEIHAQ 157
>sp|C0QGT0|CLPP_DESAH ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium
autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
GN=clpP PE=3 SV=1
Length = 205
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 105/126 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G ++D++AN+IVAQLL+L++ DP KDI Y+NSPGG VTAGM
Sbjct: 16 RAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPGGVVTAGM 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
A++DT+++I+PDV+TVC+G AASMGA LL+AG KGKR+SLPNSRIMIHQPLGGAQG SD
Sbjct: 76 AVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASD 135
Query: 231 IDLQVH 236
I +Q +
Sbjct: 136 IKIQAN 141
>sp|B0KJG6|CLPP_PSEPG ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain GB-1) GN=clpP PE=3 SV=1
Length = 213
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 116/154 (75%), Gaps = 8/154 (5%)
Query: 89 SPYIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQ 142
+ YI + + GG PM++ R ++ S+L + R+I GPVED MAN++VAQ
Sbjct: 4 NSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQ 63
Query: 143 LLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202
+L+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG
Sbjct: 64 MLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAG 123
Query: 203 TKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVH 236
KGKR+ LPNSR+MIHQPLGG QG +DI Q+H
Sbjct: 124 AKGKRHCLPNSRVMIHQPLGGFQGQATDI--QIH 155
>sp|Q31GF1|CLPP_THICR ATP-dependent Clp protease proteolytic subunit OS=Thiomicrospira
crunogena (strain XCL-2) GN=clpP PE=3 SV=1
Length = 200
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 104/121 (85%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
++ S+L + R+I G VED MAN+IVAQLL+L++ +P+KDI +Y+NSPGGSVTAGMAI+
Sbjct: 26 DIYSRLLKERVIFLVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIY 85
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDL 233
DT+R I+PDVST+C+G AASMG+FLLSAG +GKRY+LPNSR+MIHQPLGG QG SDI++
Sbjct: 86 DTMRFIKPDVSTMCIGQAASMGSFLLSAGAEGKRYALPNSRVMIHQPLGGFQGQASDIEI 145
Query: 234 Q 234
Sbjct: 146 H 146
>sp|Q2RL31|CLPP_MOOTA ATP-dependent Clp protease proteolytic subunit OS=Moorella
thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1
Length = 199
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 105/124 (84%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G ++D +AN+++AQ+L+L+A DP+KDI +Y+NSPGGS++AGM
Sbjct: 17 RAYDIYSRLLKDRIIFLGSAIDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGSISAGM 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AIFDT+++IRPDVST+CVGLAASMGAFLL+AG KGKR++LPNS IMIHQP+GG QG D
Sbjct: 77 AIFDTMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVD 136
Query: 231 IDLQ 234
I++
Sbjct: 137 IEIH 140
>sp|Q5QXN8|CLPP_IDILO ATP-dependent Clp protease proteolytic subunit OS=Idiomarina
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
GN=clpP PE=3 SV=1
Length = 206
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 112/153 (73%), Gaps = 7/153 (4%)
Query: 82 NDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVA 141
+D++ P + +P + G R ++ S+L + R+I C G VED MAN+IVA
Sbjct: 3 SDIQDPMAQLVPMVVEQTSKGE-------RSYDIYSRLLKERVIFCCGQVEDHMANLIVA 55
Query: 142 QLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSA 201
QLL+L++ +P+KDI +Y+NSPGG VTAGMAI+DT+R I+PDVSTVC+G AASMGAFLL+
Sbjct: 56 QLLFLESDNPDKDIYLYINSPGGVVTAGMAIYDTMRFIKPDVSTVCMGQAASMGAFLLAG 115
Query: 202 GTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQ 234
G +GKRY LPNSR+MIHQPLGG QG SD ++
Sbjct: 116 GAQGKRYCLPNSRVMIHQPLGGFQGQASDFEIH 148
>sp|Q0A6A7|CLPP_ALHEH ATP-dependent Clp protease proteolytic subunit OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=clpP PE=3 SV=1
Length = 214
Score = 174 bits (440), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 105/124 (84%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GPVED MAN+IVAQLL+L++ +P+KDI +Y+NSPGG+VTAG+
Sbjct: 31 RAYDIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHIYINSPGGAVTAGL 90
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+PDVSTVC+G AASMGA LL+ GTKGKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 91 AIYDTMQFIKPDVSTVCIGQAASMGALLLTGGTKGKRYALPNSRMMIHQPLGGFQGQATD 150
Query: 231 IDLQ 234
+D+
Sbjct: 151 VDIH 154
>sp|A6Q1C1|CLPP_NITSB ATP-dependent Clp protease proteolytic subunit OS=Nitratiruptor sp.
(strain SB155-2) GN=clpP PE=3 SV=1
Length = 196
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/146 (57%), Positives = 112/146 (76%), Gaps = 7/146 (4%)
Query: 89 SPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDA 148
S YIP Y G G R ++ S+L + RII G + D +A+ IVAQLL+L+A
Sbjct: 2 SYYIP-YVIERTGRGE------RSYDIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEA 54
Query: 149 VDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRY 208
DP+KDI +Y+NSPGG +T+GM+I+DT+ +I+PDVST+C+G AASMGAFLLS+GTKGKRY
Sbjct: 55 EDPDKDIYLYINSPGGVITSGMSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRY 114
Query: 209 SLPNSRIMIHQPLGGAQGGQSDIDLQ 234
+LP++RIMIHQPLGGAQG +DI++Q
Sbjct: 115 ALPHARIMIHQPLGGAQGQATDIEIQ 140
>sp|Q3AF96|CLPP_CARHZ ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3
SV=1
Length = 195
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 104/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R I GGP++D +AN+++AQ+L+L+A DP KDI +Y+NSPGG +TAGM
Sbjct: 17 RSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGM 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+C+G AASMGAFLL+AG KGKR+SLP +RIMIHQPLGG QG +D
Sbjct: 77 AIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATD 136
Query: 231 IDLQ 234
ID+
Sbjct: 137 IDIH 140
>sp|A9IR54|CLPP_BORPD ATP-dependent Clp protease proteolytic subunit OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=clpP
PE=3 SV=1
Length = 217
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 104/126 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GPV D+ AN+IVAQLL+L++ +P+KDI +Y+NSPGGSV AGM
Sbjct: 37 RAYDIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENPDKDISLYINSPGGSVYAGM 96
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PDVST+C GLAASMGAFLL+AG KGKR++LPNSRIMIHQP GGAQG SD
Sbjct: 97 AIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASD 156
Query: 231 IDLQVH 236
I +Q
Sbjct: 157 IQIQAR 162
>sp|Q0ST53|CLPP_CLOPS ATP-dependent Clp protease proteolytic subunit OS=Clostridium
perfringens (strain SM101 / Type A) GN=clpP PE=3 SV=1
Length = 194
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 104/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G V D AN++VAQLL+L++ DP+KDI +Y+NSPGGS+T+GM
Sbjct: 17 RSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGM 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+C+G+AASMGAFLLS+G KGKR++LPN+ IMIHQPLGG QG +D
Sbjct: 77 AIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATD 136
Query: 231 IDLQ 234
ID+
Sbjct: 137 IDIH 140
>sp|Q8XKK1|CLPP_CLOPE ATP-dependent Clp protease proteolytic subunit OS=Clostridium
perfringens (strain 13 / Type A) GN=clpP PE=3 SV=1
Length = 194
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 104/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G V D AN++VAQLL+L++ DP+KDI +Y+NSPGGS+T+GM
Sbjct: 17 RSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGM 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+C+G+AASMGAFLLS+G KGKR++LPN+ IMIHQPLGG QG +D
Sbjct: 77 AIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATD 136
Query: 231 IDLQ 234
ID+
Sbjct: 137 IDIH 140
>sp|Q0TQK2|CLPP_CLOP1 ATP-dependent Clp protease proteolytic subunit OS=Clostridium
perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
GN=clpP PE=3 SV=1
Length = 194
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/124 (61%), Positives = 104/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G V D AN++VAQLL+L++ DP+KDI +Y+NSPGGS+T+GM
Sbjct: 17 RSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGM 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+C+G+AASMGAFLLS+G KGKR++LPN+ IMIHQPLGG QG +D
Sbjct: 77 AIYDTMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATD 136
Query: 231 IDLQ 234
ID+
Sbjct: 137 IDIH 140
>sp|Q2L256|CLPP_BORA1 ATP-dependent Clp protease proteolytic subunit OS=Bordetella avium
(strain 197N) GN=clpP PE=3 SV=2
Length = 201
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/144 (59%), Positives = 109/144 (75%), Gaps = 7/144 (4%)
Query: 91 YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
YIP + + G G R ++ S+L + R+I GPV D AN++VAQLL+L++ +
Sbjct: 8 YIPMVVE-QSGRGE------RAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESEN 60
Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL 210
P+KDI Y+NSPGGSV AGMAIFDT++ ++PDVST+C GLAASMGAFLL+AG KGKR+SL
Sbjct: 61 PDKDISFYINSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSL 120
Query: 211 PNSRIMIHQPLGGAQGGQSDIDLQ 234
PNSRIMIHQP GGAQG SDI +Q
Sbjct: 121 PNSRIMIHQPSGGAQGQASDIQIQ 144
>sp|O30612|CLPP2_MYXXD ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus
xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1
Length = 203
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 104/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RII G PV DD+ANIIVAQLL+L++ DP+K I +Y+NSPGGSVTAG+
Sbjct: 15 RAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLYINSPGGSVTAGL 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++++ VST+CVG AASMGA LL AG KGKRY+LPNSRIMIHQPLGGAQG +D
Sbjct: 75 AIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATD 134
Query: 231 IDLQ 234
ID+Q
Sbjct: 135 IDIQ 138
>sp|Q5H434|CLPP_XANOR ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas
oryzae pv. oryzae (strain KACC10331 / KXO85) GN=clpP
PE=3 SV=1
Length = 208
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 103/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GP++D MAN+IVAQLL+L+A +P KDI +Y+NSPGG VTAGM
Sbjct: 23 RAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGM 82
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG AASMGA LL++G GKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 83 AIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATD 142
Query: 231 IDLQ 234
ID+
Sbjct: 143 IDIH 146
>sp|B2SMI3|CLPP_XANOP ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas
oryzae pv. oryzae (strain PXO99A) GN=clpP PE=3 SV=1
Length = 208
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 103/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GP++D MAN+IVAQLL+L+A +P KDI +Y+NSPGG VTAGM
Sbjct: 23 RAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGM 82
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG AASMGA LL++G GKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 83 AIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATD 142
Query: 231 IDLQ 234
ID+
Sbjct: 143 IDIH 146
>sp|Q2P6Z0|CLPP_XANOM ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas
oryzae pv. oryzae (strain MAFF 311018) GN=clpP PE=3 SV=1
Length = 208
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 103/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GP++D MAN+IVAQLL+L+A +P KDI +Y+NSPGG VTAGM
Sbjct: 23 RAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGM 82
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG AASMGA LL++G GKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 83 AIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATD 142
Query: 231 IDLQ 234
ID+
Sbjct: 143 IDIH 146
>sp|B0RTF7|CLPP_XANCB ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas
campestris pv. campestris (strain B100) GN=clpP PE=3
SV=1
Length = 208
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 103/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GP++D MAN+IVAQLL+L+A +P KDI +Y+NSPGG VTAGM
Sbjct: 23 RAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGM 82
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG AASMGA LL++G GKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 83 AIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATD 142
Query: 231 IDLQ 234
ID+
Sbjct: 143 IDIH 146
>sp|Q3BWQ1|CLPP_XANC5 ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=clpP PE=3
SV=1
Length = 208
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 103/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GP++D MAN+IVAQLL+L+A +P KDI +Y+NSPGG VTAGM
Sbjct: 23 RAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGM 82
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG AASMGA LL++G GKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 83 AIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATD 142
Query: 231 IDLQ 234
ID+
Sbjct: 143 IDIH 146
>sp|Q8PNI5|CLPP_XANAC ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=clpP PE=3 SV=1
Length = 208
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 103/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GP++D MAN+IVAQLL+L+A +P KDI +Y+NSPGG VTAGM
Sbjct: 23 RAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGM 82
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG AASMGA LL++G GKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 83 AIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATD 142
Query: 231 IDLQ 234
ID+
Sbjct: 143 IDIH 146
>sp|Q63V41|CLPP_BURPS ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
pseudomallei (strain K96243) GN=clpP PE=3 SV=1
Length = 217
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 108/131 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PDVST+C+GLAASMGAFLL++G KGKRY+LPN+R+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASD 158
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 159 IEIQAREILYL 169
>sp|A3NAI5|CLPP_BURP6 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
pseudomallei (strain 668) GN=clpP PE=3 SV=1
Length = 217
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 108/131 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PDVST+C+GLAASMGAFLL++G KGKRY+LPN+R+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASD 158
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 159 IEIQAREILYL 169
>sp|A3NWA6|CLPP_BURP0 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
pseudomallei (strain 1106a) GN=clpP PE=3 SV=1
Length = 217
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 108/131 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PDVST+C+GLAASMGAFLL++G KGKRY+LPN+R+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASD 158
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 159 IEIQAREILYL 169
>sp|A1V4X1|CLPP_BURMS ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
mallei (strain SAVP1) GN=clpP PE=3 SV=1
Length = 217
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 108/131 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PDVST+C+GLAASMGAFLL++G KGKRY+LPN+R+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASD 158
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 159 IEIQAREILYL 169
>sp|A2SBG3|CLPP_BURM9 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
mallei (strain NCTC 10229) GN=clpP PE=3 SV=1
Length = 217
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 108/131 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PDVST+C+GLAASMGAFLL++G KGKRY+LPN+R+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASD 158
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 159 IEIQAREILYL 169
>sp|A3MKJ8|CLPP_BURM7 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
mallei (strain NCTC 10247) GN=clpP PE=3 SV=1
Length = 217
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 108/131 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ ++PDVST+C+GLAASMGAFLL++G KGKRY+LPN+R+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASD 158
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 159 IEIQAREILYL 169
>sp|Q39FE8|CLPP_BURS3 ATP-dependent Clp protease proteolytic subunit OS=Burkholderia sp.
(strain 383) GN=clpP PE=3 SV=1
Length = 217
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 108/131 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R++ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+PDVST+C+GLAASMGAFLL++G KGKR++LPNSR+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASD 158
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 159 IEIQAREILYL 169
>sp|Q8PBY6|CLPP_XANCP ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=clpP PE=3 SV=1
Length = 208
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 103/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GP++D MAN+IVAQLL+L+A +P KDI +Y+NSPGG VTAGM
Sbjct: 23 RAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGM 82
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG AASMGA LL++G GKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 83 AIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATD 142
Query: 231 IDLQ 234
ID+
Sbjct: 143 IDIH 146
>sp|Q4URL4|CLPP_XANC8 ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=clpP PE=3
SV=1
Length = 208
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/124 (62%), Positives = 103/124 (83%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R+I GP++D MAN+IVAQLL+L+A +P KDI +Y+NSPGG VTAGM
Sbjct: 23 RAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGM 82
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT+++I+PDVST+CVG AASMGA LL++G GKRY+LPNSR+MIHQPLGG QG +D
Sbjct: 83 AIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQPLGGFQGQATD 142
Query: 231 IDLQ 234
ID+
Sbjct: 143 IDIH 146
>sp|A4XHW0|CLPP_CALS8 ATP-dependent Clp protease proteolytic subunit
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=clpP PE=3 SV=1
Length = 195
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 104/126 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + RI+ G + DD+A++IVAQLL+L+A DP+KDI +Y+NSPGGSVTAG
Sbjct: 17 RAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGF 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DTI++I+PDVST+CVG+AASMGAFLL+AG KGKR++LPNS IMIHQP+GG +G +D
Sbjct: 77 AIYDTIQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGVRGQATD 136
Query: 231 IDLQVH 236
I +
Sbjct: 137 IKIHAE 142
>sp|Q0BEF6|CLPP_BURCM ATP-dependent Clp protease proteolytic subunit OS=Burkholderia
ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1
Length = 217
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/131 (58%), Positives = 108/131 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
R ++ S+L + R++ G V D AN++VAQLL+L++ +P+KDI +Y+NSPGGSV+AGM
Sbjct: 39 RSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISLYINSPGGSVSAGM 98
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSD 230
AI+DT++ I+PDVST+C+GLAASMGAFLL++G KGKR++LPNSR+MIHQPLGGA+G SD
Sbjct: 99 AIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASD 158
Query: 231 IDLQVHIMAYF 241
I++Q + Y
Sbjct: 159 IEIQAREILYL 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,463,749
Number of Sequences: 539616
Number of extensions: 3909843
Number of successful extensions: 8755
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7938
Number of HSP's gapped (non-prelim): 803
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)