Query 025891
Match_columns 246
No_of_seqs 231 out of 1375
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 10:44:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 3E-52 6.6E-57 375.0 16.7 199 26-243 15-213 (275)
2 COG0740 ClpP Protease subunit 100.0 1.3E-45 2.9E-50 322.9 15.1 134 111-244 16-149 (200)
3 PRK12552 ATP-dependent Clp pro 100.0 5.4E-43 1.2E-47 310.8 16.9 150 84-244 3-171 (222)
4 PRK14514 ATP-dependent Clp pro 100.0 3.1E-43 6.6E-48 312.1 15.0 134 111-244 43-176 (221)
5 PRK14513 ATP-dependent Clp pro 100.0 7.7E-43 1.7E-47 305.6 16.1 134 111-244 16-149 (201)
6 CHL00028 clpP ATP-dependent Cl 100.0 1.5E-42 3.3E-47 303.0 17.0 134 111-244 19-153 (200)
7 PRK12551 ATP-dependent Clp pro 100.0 4.9E-42 1.1E-46 299.2 15.2 133 112-244 15-147 (196)
8 TIGR00493 clpP ATP-dependent C 100.0 2.7E-38 5.8E-43 273.5 15.2 134 111-244 15-148 (191)
9 PRK14512 ATP-dependent Clp pro 100.0 2E-37 4.3E-42 269.8 16.2 131 114-244 15-145 (197)
10 PRK00277 clpP ATP-dependent Cl 100.0 3.4E-36 7.4E-41 261.8 15.8 134 111-244 20-153 (200)
11 PF00574 CLP_protease: Clp pro 100.0 2.2E-36 4.8E-41 255.7 11.5 135 110-244 4-138 (182)
12 PRK12553 ATP-dependent Clp pro 100.0 1.2E-35 2.7E-40 259.7 14.4 132 113-244 26-159 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 1.4E-34 3.1E-39 244.7 13.1 131 114-244 1-131 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 7.9E-33 1.7E-37 233.1 14.9 122 123-244 1-122 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 3E-24 6.4E-29 178.3 14.0 115 124-243 2-119 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.9 1.1E-22 2.3E-27 174.6 13.9 118 124-245 3-128 (172)
17 cd00394 Clp_protease_like Case 99.9 6.3E-21 1.4E-25 157.5 13.0 117 124-242 1-119 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.8 2.4E-19 5.3E-24 153.6 13.6 99 124-225 3-104 (187)
19 cd07021 Clp_protease_NfeD_like 99.8 2.5E-18 5.5E-23 147.8 13.4 119 124-245 3-121 (178)
20 COG0616 SppA Periplasmic serin 99.5 1.9E-14 4.2E-19 133.4 9.1 103 124-232 63-174 (317)
21 TIGR00706 SppA_dom signal pept 99.4 3E-12 6.5E-17 111.4 10.5 91 124-217 4-96 (207)
22 cd07023 S49_Sppa_N_C Signal pe 99.3 5.1E-12 1.1E-16 109.4 10.2 92 123-216 3-100 (208)
23 TIGR00705 SppA_67K signal pept 99.3 1.6E-11 3.5E-16 122.3 9.2 90 124-215 312-411 (584)
24 PF01972 SDH_sah: Serine dehyd 99.2 4.3E-11 9.3E-16 110.1 9.4 90 129-223 70-159 (285)
25 cd07022 S49_Sppa_36K_type Sign 99.2 8.8E-11 1.9E-15 102.6 10.6 92 124-217 4-108 (214)
26 PRK11778 putative inner membra 99.2 9.1E-11 2E-15 110.2 9.8 92 124-217 94-189 (330)
27 cd07014 S49_SppA Signal peptid 99.2 1.4E-10 3.1E-15 98.1 9.6 87 135-223 23-112 (177)
28 COG1030 NfeD Membrane-bound se 99.2 1.3E-10 2.9E-15 112.3 10.0 98 123-223 29-129 (436)
29 PRK10949 protease 4; Provision 99.2 1E-10 2.2E-15 117.5 9.4 91 124-216 330-430 (618)
30 cd07019 S49_SppA_1 Signal pept 99.1 3.6E-10 7.8E-15 98.7 10.0 92 124-217 4-105 (211)
31 cd07018 S49_SppA_67K_type Sign 98.9 8E-09 1.7E-13 90.9 9.0 89 129-220 24-115 (222)
32 COG3904 Predicted periplasmic 98.3 3.7E-06 8E-11 75.5 8.7 100 119-223 71-173 (245)
33 TIGR00705 SppA_67K signal pept 97.8 6.3E-05 1.4E-09 75.6 8.5 84 134-220 76-163 (584)
34 cd06558 crotonase-like Crotona 97.8 0.00014 3E-09 61.1 8.9 92 131-224 23-135 (195)
35 PRK10949 protease 4; Provision 97.7 0.00012 2.6E-09 74.2 8.1 86 133-221 94-183 (618)
36 PRK06688 enoyl-CoA hydratase; 97.3 0.0017 3.8E-08 57.8 10.1 91 131-223 29-137 (259)
37 PRK08258 enoyl-CoA hydratase; 97.2 0.003 6.5E-08 57.2 10.5 92 131-224 41-155 (277)
38 TIGR00513 accA acetyl-CoA carb 97.2 0.0028 6.2E-08 59.8 9.9 99 121-223 122-230 (316)
39 PRK06072 enoyl-CoA hydratase; 97.2 0.0039 8.5E-08 55.6 10.4 98 124-223 12-130 (248)
40 PRK06495 enoyl-CoA hydratase; 97.2 0.004 8.7E-08 55.8 10.5 100 124-227 16-142 (257)
41 PRK05724 acetyl-CoA carboxylas 97.2 0.0032 6.9E-08 59.5 10.2 99 121-223 122-230 (319)
42 PRK07511 enoyl-CoA hydratase; 97.1 0.0039 8.5E-08 55.8 10.0 95 125-223 16-139 (260)
43 CHL00198 accA acetyl-CoA carbo 97.1 0.0033 7.3E-08 59.5 9.6 98 122-223 126-233 (322)
44 PRK06210 enoyl-CoA hydratase; 97.1 0.004 8.6E-08 56.1 9.7 49 173-223 101-149 (272)
45 PRK05981 enoyl-CoA hydratase; 97.1 0.0043 9.4E-08 55.7 9.8 50 172-223 95-144 (266)
46 PRK05869 enoyl-CoA hydratase; 97.1 0.0057 1.2E-07 54.0 10.3 95 125-223 21-140 (222)
47 PRK03580 carnitinyl-CoA dehydr 97.1 0.0042 9E-08 55.8 9.6 94 125-220 16-132 (261)
48 PRK06143 enoyl-CoA hydratase; 97.0 0.005 1.1E-07 55.3 9.6 91 131-223 31-141 (256)
49 PRK07509 enoyl-CoA hydratase; 97.0 0.006 1.3E-07 54.5 10.0 89 131-223 27-143 (262)
50 PRK06190 enoyl-CoA hydratase; 97.0 0.0067 1.5E-07 54.8 10.3 89 131-221 28-133 (258)
51 PF00378 ECH: Enoyl-CoA hydrat 97.0 0.0057 1.2E-07 53.9 9.7 89 131-223 22-131 (245)
52 TIGR03189 dienoyl_CoA_hyt cycl 97.0 0.0062 1.3E-07 54.6 10.0 97 125-223 14-130 (251)
53 PRK09674 enoyl-CoA hydratase-i 97.0 0.0066 1.4E-07 54.3 10.1 91 131-223 26-133 (255)
54 PRK07468 enoyl-CoA hydratase; 97.0 0.0071 1.5E-07 54.3 10.0 91 131-223 29-141 (262)
55 PLN03229 acetyl-coenzyme A car 96.9 0.0037 8.1E-08 64.7 9.2 70 152-223 242-321 (762)
56 PLN02600 enoyl-CoA hydratase 96.9 0.0067 1.5E-07 54.2 9.8 89 131-221 19-127 (251)
57 PLN02664 enoyl-CoA hydratase/d 96.9 0.0063 1.4E-07 55.1 9.7 89 131-223 32-152 (275)
58 TIGR03210 badI 2-ketocyclohexa 96.9 0.0072 1.6E-07 54.2 9.9 91 131-223 26-135 (256)
59 PRK05864 enoyl-CoA hydratase; 96.9 0.0078 1.7E-07 54.5 10.2 89 131-221 34-148 (276)
60 PRK07854 enoyl-CoA hydratase; 96.9 0.006 1.3E-07 54.4 9.3 84 131-219 24-123 (243)
61 PRK07110 polyketide biosynthes 96.9 0.0048 1E-07 55.1 8.7 91 131-223 29-135 (249)
62 PRK06023 enoyl-CoA hydratase; 96.9 0.0081 1.8E-07 53.6 10.1 91 131-223 30-138 (251)
63 PRK12319 acetyl-CoA carboxylas 96.9 0.0097 2.1E-07 54.6 10.8 99 121-223 69-177 (256)
64 PRK08138 enoyl-CoA hydratase; 96.9 0.008 1.7E-07 54.0 9.9 91 131-223 32-139 (261)
65 PRK08260 enoyl-CoA hydratase; 96.9 0.0073 1.6E-07 55.3 9.8 50 172-223 105-154 (296)
66 PRK05809 3-hydroxybutyryl-CoA 96.9 0.008 1.7E-07 53.7 9.7 89 131-223 28-138 (260)
67 PRK09076 enoyl-CoA hydratase; 96.9 0.0079 1.7E-07 53.9 9.5 89 131-223 26-136 (258)
68 PRK11423 methylmalonyl-CoA dec 96.9 0.018 3.9E-07 51.9 11.8 90 131-223 28-137 (261)
69 TIGR02280 PaaB1 phenylacetate 96.8 0.01 2.2E-07 53.1 9.8 88 131-221 23-132 (256)
70 PRK08150 enoyl-CoA hydratase; 96.8 0.012 2.6E-07 52.9 10.1 89 131-223 26-133 (255)
71 PLN03230 acetyl-coenzyme A car 96.8 0.007 1.5E-07 59.3 9.1 90 129-222 200-299 (431)
72 TIGR01929 menB naphthoate synt 96.8 0.01 2.2E-07 53.3 9.6 51 171-223 88-138 (259)
73 PRK05980 enoyl-CoA hydratase; 96.8 0.0088 1.9E-07 53.5 9.1 89 131-221 27-139 (260)
74 PLN03214 probable enoyl-CoA hy 96.8 0.0092 2E-07 54.4 9.4 91 131-223 35-148 (278)
75 PRK05995 enoyl-CoA hydratase; 96.8 0.014 3E-07 52.2 10.3 50 172-223 91-140 (262)
76 PRK06142 enoyl-CoA hydratase; 96.7 0.0095 2.1E-07 53.7 9.2 50 172-223 101-150 (272)
77 PLN02921 naphthoate synthase 96.7 0.013 2.9E-07 55.0 10.4 91 131-223 91-202 (327)
78 PRK07260 enoyl-CoA hydratase; 96.7 0.014 3E-07 52.2 10.1 85 131-219 26-135 (255)
79 PLN02851 3-hydroxyisobutyryl-C 96.7 0.014 3E-07 56.8 10.6 99 123-223 53-179 (407)
80 PLN02888 enoyl-CoA hydratase 96.7 0.015 3.2E-07 52.6 10.0 87 131-221 34-138 (265)
81 PRK07658 enoyl-CoA hydratase; 96.7 0.013 2.7E-07 52.3 9.4 89 131-221 25-133 (257)
82 TIGR03134 malonate_gamma malon 96.7 0.02 4.3E-07 52.0 10.7 107 131-239 45-168 (238)
83 PRK07327 enoyl-CoA hydratase; 96.7 0.017 3.6E-07 52.2 10.1 91 131-223 36-147 (268)
84 PRK09245 enoyl-CoA hydratase; 96.7 0.012 2.7E-07 52.7 9.2 50 172-223 95-144 (266)
85 PRK07938 enoyl-CoA hydratase; 96.7 0.017 3.8E-07 51.6 10.1 94 131-226 25-138 (249)
86 PRK05870 enoyl-CoA hydratase; 96.6 0.013 2.8E-07 52.3 9.2 50 172-223 87-136 (249)
87 PRK08140 enoyl-CoA hydratase; 96.6 0.02 4.4E-07 51.3 10.4 88 131-221 28-138 (262)
88 PRK09120 p-hydroxycinnamoyl Co 96.6 0.016 3.5E-07 52.6 9.8 89 131-221 32-143 (275)
89 PRK07657 enoyl-CoA hydratase; 96.6 0.019 4.2E-07 51.4 10.0 89 131-223 28-138 (260)
90 PRK08272 enoyl-CoA hydratase; 96.6 0.018 4E-07 52.8 10.1 45 172-218 119-163 (302)
91 PRK06127 enoyl-CoA hydratase; 96.6 0.022 4.7E-07 51.5 10.3 89 131-223 35-147 (269)
92 PRK05674 gamma-carboxygeranoyl 96.6 0.017 3.7E-07 52.1 9.4 89 131-221 30-140 (265)
93 PRK07396 dihydroxynaphthoic ac 96.5 0.021 4.6E-07 51.7 10.0 91 131-223 37-148 (273)
94 PRK08290 enoyl-CoA hydratase; 96.5 0.017 3.6E-07 53.0 9.3 52 172-225 110-161 (288)
95 PRK06144 enoyl-CoA hydratase; 96.5 0.017 3.6E-07 52.0 9.1 87 131-219 32-139 (262)
96 PRK08321 naphthoate synthase; 96.5 0.024 5.1E-07 52.4 10.2 89 131-221 49-175 (302)
97 PRK06494 enoyl-CoA hydratase; 96.5 0.027 5.9E-07 50.5 10.4 91 131-223 28-135 (259)
98 PRK05862 enoyl-CoA hydratase; 96.5 0.024 5.2E-07 50.7 9.9 89 131-221 28-133 (257)
99 PRK08139 enoyl-CoA hydratase; 96.5 0.028 6.1E-07 50.8 10.4 90 131-224 35-146 (266)
100 PF01343 Peptidase_S49: Peptid 96.5 0.0035 7.7E-08 52.2 4.3 42 176-219 2-43 (154)
101 PLN02988 3-hydroxyisobutyryl-C 96.5 0.023 5E-07 54.6 10.2 98 124-223 21-146 (381)
102 PRK05617 3-hydroxyisobutyryl-C 96.4 0.02 4.2E-07 54.0 9.3 48 172-221 92-139 (342)
103 PRK06563 enoyl-CoA hydratase; 96.4 0.027 5.9E-07 50.3 9.7 47 175-223 87-133 (255)
104 PLN02267 enoyl-CoA hydratase/i 96.4 0.048 1E-06 48.7 11.0 91 131-223 23-136 (239)
105 PRK12478 enoyl-CoA hydratase; 96.3 0.016 3.6E-07 53.4 8.2 48 172-221 104-151 (298)
106 PRK07827 enoyl-CoA hydratase; 96.3 0.028 6.2E-07 50.3 9.4 48 172-221 93-140 (260)
107 TIGR03200 dearomat_oah 6-oxocy 96.3 0.03 6.5E-07 53.9 10.0 91 131-223 52-165 (360)
108 PLN02157 3-hydroxyisobutyryl-C 96.3 0.033 7.2E-07 54.0 10.3 98 124-223 49-174 (401)
109 PRK06213 enoyl-CoA hydratase; 96.2 0.049 1.1E-06 47.9 10.3 87 131-223 26-133 (229)
110 PRK07659 enoyl-CoA hydratase; 96.2 0.039 8.5E-07 49.5 9.7 88 131-223 30-139 (260)
111 PRK08788 enoyl-CoA hydratase; 96.2 0.025 5.5E-07 52.2 8.6 44 178-223 119-162 (287)
112 COG1024 CaiD Enoyl-CoA hydrata 96.2 0.022 4.9E-07 50.8 7.9 91 131-223 29-139 (257)
113 PRK07112 polyketide biosynthes 96.2 0.039 8.3E-07 49.5 9.4 51 172-224 88-138 (255)
114 PRK08252 enoyl-CoA hydratase; 96.1 0.053 1.1E-06 48.5 10.1 91 131-223 27-132 (254)
115 PLN02874 3-hydroxyisobutyryl-C 96.1 0.038 8.2E-07 52.9 9.4 96 124-223 23-146 (379)
116 PRK07799 enoyl-CoA hydratase; 95.8 0.08 1.7E-06 47.5 9.9 91 131-223 29-141 (263)
117 PRK08259 enoyl-CoA hydratase; 95.8 0.081 1.8E-06 47.5 9.8 88 131-220 27-131 (254)
118 TIGR02437 FadB fatty oxidation 95.6 0.084 1.8E-06 54.5 10.3 91 131-223 31-143 (714)
119 TIGR03133 malonate_beta malona 95.5 0.12 2.6E-06 48.1 9.8 93 126-221 70-177 (274)
120 KOG1680 Enoyl-CoA hydratase [L 95.3 0.057 1.2E-06 50.6 7.2 91 131-223 61-168 (290)
121 TIGR03222 benzo_boxC benzoyl-C 95.3 0.097 2.1E-06 52.8 9.3 85 131-217 45-156 (546)
122 TIGR01117 mmdA methylmalonyl-C 95.3 0.13 2.9E-06 51.3 10.2 91 128-222 328-432 (512)
123 TIGR02440 FadJ fatty oxidation 95.3 0.12 2.6E-06 53.2 10.1 90 131-223 26-139 (699)
124 PRK08184 benzoyl-CoA-dihydrodi 95.2 0.085 1.8E-06 53.2 8.7 85 131-217 49-160 (550)
125 PRK11730 fadB multifunctional 95.0 0.11 2.5E-06 53.5 9.0 91 131-223 31-143 (715)
126 PRK07189 malonate decarboxylas 94.9 0.16 3.5E-06 47.8 9.1 93 126-221 79-186 (301)
127 PF01039 Carboxyl_trans: Carbo 94.9 0.062 1.3E-06 53.1 6.6 93 129-223 308-412 (493)
128 PRK11154 fadJ multifunctional 94.8 0.24 5.3E-06 51.0 10.8 89 131-223 31-144 (708)
129 COG0825 AccA Acetyl-CoA carbox 94.0 0.12 2.6E-06 48.8 5.8 88 152-241 150-257 (317)
130 TIGR02441 fa_ox_alpha_mit fatt 93.9 0.3 6.5E-06 50.7 9.2 88 131-221 38-149 (737)
131 PRK05654 acetyl-CoA carboxylas 93.4 0.66 1.4E-05 43.4 9.6 91 127-221 133-234 (292)
132 TIGR00515 accD acetyl-CoA carb 93.1 0.59 1.3E-05 43.7 8.9 91 127-221 132-233 (285)
133 PLN02820 3-methylcrotonyl-CoA 91.5 1.9 4.2E-05 43.9 10.9 92 129-222 380-483 (569)
134 TIGR03222 benzo_boxC benzoyl-C 91.0 3.1 6.7E-05 42.2 11.8 90 131-224 295-416 (546)
135 PF06833 MdcE: Malonate decarb 90.4 2.6 5.6E-05 38.6 9.6 68 148-219 60-141 (234)
136 PLN02820 3-methylcrotonyl-CoA 88.6 3.4 7.4E-05 42.1 10.0 90 127-220 141-244 (569)
137 PRK08184 benzoyl-CoA-dihydrodi 88.4 2 4.3E-05 43.5 8.1 50 172-223 361-419 (550)
138 CHL00174 accD acetyl-CoA carbo 85.9 5.3 0.00012 37.7 8.9 91 127-221 145-247 (296)
139 TIGR01117 mmdA methylmalonyl-C 85.2 5 0.00011 40.3 9.0 92 126-221 93-194 (512)
140 PF08496 Peptidase_S49_N: Pept 84.0 1.7 3.6E-05 37.3 4.3 44 124-167 102-146 (155)
141 KOG1681 Enoyl-CoA isomerase [L 80.8 0.48 1E-05 43.9 -0.1 54 170-225 116-169 (292)
142 KOG1679 Enoyl-CoA hydratase [L 79.6 3.4 7.4E-05 38.2 4.9 84 136-221 60-163 (291)
143 PF01039 Carboxyl_trans: Carbo 78.8 4.1 9E-05 40.4 5.7 91 127-221 69-171 (493)
144 COG4799 Acetyl-CoA carboxylase 70.8 18 0.00039 36.9 7.8 91 128-220 337-439 (526)
145 cd06567 Peptidase_S41 C-termin 70.5 32 0.0007 29.6 8.5 77 126-204 65-168 (224)
146 KOG1682 Enoyl-CoA isomerase [L 67.6 23 0.00051 32.6 7.2 44 171-216 116-159 (287)
147 cd07560 Peptidase_S41_CPP C-te 65.8 38 0.00083 29.7 8.1 88 114-204 41-155 (211)
148 KOG1684 Enoyl-CoA hydratase [L 65.6 23 0.0005 34.8 7.1 92 122-215 48-168 (401)
149 TIGR00225 prc C-terminal pepti 56.4 50 0.0011 30.7 7.5 73 131-204 161-258 (334)
150 PF03808 Glyco_tran_WecB: Glyc 55.8 79 0.0017 26.7 8.0 62 122-190 49-111 (172)
151 cd06533 Glyco_transf_WecG_TagA 48.9 1.2E+02 0.0027 25.6 8.2 64 122-191 47-110 (171)
152 TIGR02886 spore_II_AA anti-sig 47.4 35 0.00077 25.7 4.2 78 123-204 10-93 (106)
153 PF03572 Peptidase_S41: Peptid 45.1 1.3E+02 0.0028 24.1 7.4 70 134-204 15-114 (169)
154 cd07041 STAS_RsbR_RsbS_like Su 44.8 1.3E+02 0.0029 22.6 7.5 82 123-204 12-95 (109)
155 COG0793 Prc Periplasmic protea 44.3 82 0.0018 30.8 7.1 71 132-203 214-310 (406)
156 PLN00049 carboxyl-terminal pro 44.3 1.2E+02 0.0026 29.1 8.2 80 122-202 194-301 (389)
157 cd01834 SGNH_hydrolase_like_2 43.3 74 0.0016 25.5 5.8 65 122-189 2-70 (191)
158 COG0757 AroQ 3-dehydroquinate 43.2 50 0.0011 28.4 4.8 29 157-186 70-98 (146)
159 smart00245 TSPc tail specific 42.3 1.5E+02 0.0032 25.3 7.7 73 131-204 38-136 (192)
160 TIGR00377 ant_ant_sig anti-ant 42.1 1.4E+02 0.0031 22.2 7.4 75 124-202 15-95 (108)
161 cd07561 Peptidase_S41_CPP_like 41.0 1.7E+02 0.0037 26.5 8.3 71 132-203 75-183 (256)
162 PRK11186 carboxy-terminal prot 40.0 1.2E+02 0.0026 31.8 7.9 72 132-204 364-461 (667)
163 PLN00125 Succinyl-CoA ligase [ 39.7 1.2E+02 0.0025 28.7 7.2 65 123-192 179-245 (300)
164 COG3904 Predicted periplasmic 36.4 87 0.0019 28.9 5.5 67 128-198 54-128 (245)
165 COG0447 MenB Dihydroxynaphthoi 36.0 47 0.001 31.0 3.8 52 170-223 106-157 (282)
166 PF14566 PTPlike_phytase: Inos 35.9 1.1E+02 0.0025 25.3 5.8 55 122-177 91-149 (149)
167 cd06844 STAS Sulphate Transpor 34.6 56 0.0012 24.6 3.5 35 123-157 10-44 (100)
168 cd05014 SIS_Kpsf KpsF-like pro 33.1 2.2E+02 0.0049 21.8 7.7 37 152-189 47-83 (128)
169 TIGR01579 MiaB-like-C MiaB-lik 33.0 1.6E+02 0.0036 28.1 7.2 71 124-194 1-77 (414)
170 KOG3093 5-formyltetrahydrofola 32.5 69 0.0015 28.9 4.2 45 136-180 31-75 (200)
171 TIGR00282 metallophosphoestera 32.4 1E+02 0.0022 28.5 5.5 65 123-187 2-66 (266)
172 TIGR00661 MJ1255 conserved hyp 32.3 78 0.0017 28.8 4.7 36 154-190 1-37 (321)
173 cd07563 Peptidase_S41_IRBP Int 31.3 3.1E+02 0.0067 24.2 8.2 52 153-204 96-181 (250)
174 cd01844 SGNH_hydrolase_like_6 30.5 1.2E+02 0.0027 24.7 5.2 18 172-189 49-66 (177)
175 cd07562 Peptidase_S41_TRI Tric 29.6 3.3E+02 0.0071 24.4 8.2 84 116-204 81-187 (266)
176 cd01455 vWA_F11C1-5a_type Von 28.5 2.7E+02 0.0059 24.7 7.2 84 104-190 65-152 (191)
177 TIGR00696 wecB_tagA_cpsF bacte 28.1 3.9E+02 0.0085 23.0 8.6 62 123-191 50-111 (177)
178 TIGR00615 recR recombination p 27.2 2.1E+02 0.0045 25.6 6.3 85 107-192 82-175 (195)
179 KOG0069 Glyoxylate/hydroxypyru 25.1 2.1E+02 0.0045 27.7 6.3 73 103-180 195-271 (336)
180 COG1366 SpoIIAA Anti-anti-sigm 24.4 1.8E+02 0.0038 22.7 4.8 77 124-202 16-96 (117)
181 COG0779 Uncharacterized protei 24.2 1.7E+02 0.0037 25.1 5.1 41 125-165 41-85 (153)
182 COG1512 Beta-propeller domains 24.1 1.7E+02 0.0037 27.3 5.4 57 119-175 31-89 (271)
183 cd05009 SIS_GlmS_GlmD_2 SIS (S 24.1 3.5E+02 0.0076 21.1 8.8 37 152-188 61-97 (153)
184 COG0074 SucD Succinyl-CoA synt 23.7 2.1E+02 0.0045 27.3 5.9 89 114-216 160-254 (293)
185 PTZ00187 succinyl-CoA syntheta 23.7 2.3E+02 0.005 27.1 6.3 66 122-192 197-264 (317)
186 PRK13170 hisH imidazole glycer 23.6 68 0.0015 27.6 2.5 29 162-190 45-80 (196)
187 COG4098 comFA Superfamily II D 22.6 1.9E+02 0.004 28.9 5.5 59 182-246 373-435 (441)
188 PRK11557 putative DNA-binding 22.6 5.5E+02 0.012 22.8 9.0 82 114-196 120-218 (278)
189 cd07382 MPP_DR1281 Deinococcus 22.4 2E+02 0.0044 26.3 5.5 62 123-187 1-65 (255)
190 PF01740 STAS: STAS domain; I 22.1 3.5E+02 0.0076 20.4 7.1 80 123-202 11-100 (117)
191 PRK14640 hypothetical protein; 21.9 1.8E+02 0.004 24.5 4.8 61 125-186 39-103 (152)
192 PRK14635 hypothetical protein; 21.8 1.8E+02 0.0039 24.8 4.7 36 130-165 49-85 (162)
193 PRK14643 hypothetical protein; 21.7 1.9E+02 0.004 25.0 4.8 56 129-185 52-109 (164)
194 cd01452 VWA_26S_proteasome_sub 21.2 4E+02 0.0088 23.3 6.9 40 152-191 107-147 (187)
195 PF13607 Succ_CoA_lig: Succiny 21.0 3.3E+02 0.0072 22.5 6.1 60 123-190 30-91 (138)
196 PF02310 B12-binding: B12 bind 20.9 3.8E+02 0.0082 20.3 6.8 67 123-198 30-97 (121)
197 KOG0540 3-Methylcrotonyl-CoA c 20.8 3.4E+02 0.0074 27.8 7.0 85 129-218 363-461 (536)
198 PRK14639 hypothetical protein; 20.6 2.1E+02 0.0046 23.9 4.8 61 125-186 30-94 (140)
199 cd01825 SGNH_hydrolase_peri1 S 20.2 3.7E+02 0.0081 21.5 6.2 59 123-191 1-67 (189)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-52 Score=374.96 Aligned_cols=199 Identities=47% Similarity=0.733 Sum_probs=181.1
Q ss_pred ccccccccchhhhhhhhhcccccccccccceeeeecCCCccccCCCCCCccceeeccCCCCCCCCCcccccCCCCCCCCC
Q 025891 26 SHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPP 105 (246)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (246)
+.++...+.|...++|.+....+|..++++-++++++.-|++ +.|+++.+..+|..++.. .+ +|
T Consensus 15 ~~~~~~~l~P~~~~~~~~~~~~~r~~~~~~~~s~~sg~~~~~--------~~~~~~~~~~~p~~~~~~---~~---rG-- 78 (275)
T KOG0840|consen 15 SPKRFSGLNPASTSNFPKQRNVRRQLKSSTPKSLRSGGSSNS--------RGWSLRAPILVPRFPIES---PG---RG-- 78 (275)
T ss_pred ccchhcccCchhhhhccccccchhhhhccCcccccccCCCCC--------CcccccccccCCcceeec---cc---cC--
Confidence 666777888888899998888888888888899999988773 279999999999443333 22 23
Q ss_pred CccchhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEE
Q 025891 106 PMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 185 (246)
Q Consensus 106 p~~~~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~T 185 (246)
.|+++|++++||++|||||+++|||++++.+++||+||+++|++|+|++|||||||++++|++|||+|+++++||.|
T Consensus 79 ---~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~T 155 (275)
T KOG0840|consen 79 ---RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVST 155 (275)
T ss_pred ---CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCcee
Confidence 36677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891 186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT 243 (246)
Q Consensus 186 vv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~ 243 (246)
+|.|+|||||++||+||.||+|+++||+++|||||.++++|++.||.++|+|+.+++.
T Consensus 156 ic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~ 213 (275)
T KOG0840|consen 156 ICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKE 213 (275)
T ss_pred eehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999875
No 2
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-45 Score=322.92 Aligned_cols=134 Identities=59% Similarity=0.965 Sum_probs=130.5
Q ss_pred hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
+.+|+|++|+++|+|||+|+|++.+++.+++||++|+++++.|+|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus 16 ~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G~ 95 (200)
T COG0740 16 RSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMGQ 95 (200)
T ss_pred ChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEecH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
|||||++|++||++|||+++|||++|||||+++++|+++||+++|+||++++..
T Consensus 96 AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~ 149 (200)
T COG0740 96 AASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKER 149 (200)
T ss_pred HHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998764
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=5.4e-43 Score=310.77 Aligned_cols=150 Identities=41% Similarity=0.674 Sum_probs=136.6
Q ss_pred CCCCCCCCcccccCCCCCCCCCCccchhhccHhhhhccCcEEEeccccChh----------HHHHHHHHHHhhhhcCCCC
Q 025891 84 LEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDD----------MANIIVAQLLYLDAVDPNK 153 (246)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dv~s~L~~~RIIfL~G~Idd~----------~A~~iiaqLl~L~~~d~~k 153 (246)
..+|..||..... .+.+|| |++++|+++|||||+++||++ +++.+++||++|+.+++.+
T Consensus 3 ~~~~~~~~~~~~~----~~~~~~-------d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k 71 (222)
T PRK12552 3 IMAVQAPYYGDAV----MRTPPP-------DLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEK 71 (222)
T ss_pred CCcccccccCCCC----CCCCCc-------CHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCC
Confidence 4556666655421 233444 699999999999999999999 9999999999999999999
Q ss_pred CeEEEEeCCCCC---------HHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891 154 DIIMYLNSPGGS---------VTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA 224 (246)
Q Consensus 154 ~I~L~INSPGGs---------V~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~ 224 (246)
+|+||||||||+ |++|++|||+|++++++|+|+|.|+|||||++|+++|++|||+++|||++|||||++++
T Consensus 72 ~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~ 151 (222)
T PRK12552 72 PIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA 151 (222)
T ss_pred CEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc
Confidence 999999999988 77889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 025891 225 QGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 225 ~G~a~Di~i~A~eL~k~~~~ 244 (246)
+|+++||+++|+||+++|+.
T Consensus 152 ~G~A~di~~~a~el~~~r~~ 171 (222)
T PRK12552 152 RGQATDIQIRAKEVLHNKRT 171 (222)
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=3.1e-43 Score=312.09 Aligned_cols=134 Identities=55% Similarity=0.868 Sum_probs=130.4
Q ss_pred hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.|++++||++|||||+|+||+.+++.+++||++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus 43 ~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G~ 122 (221)
T PRK14514 43 TQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTGM 122 (221)
T ss_pred cccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
|||||++|+++|++|||+|+|||++|||||++++.|+++|++++++||+++++.
T Consensus 123 AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~ 176 (221)
T PRK14514 123 AASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKE 176 (221)
T ss_pred ehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998864
No 5
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=7.7e-43 Score=305.58 Aligned_cols=134 Identities=51% Similarity=0.862 Sum_probs=130.3
Q ss_pred hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.|++++|+++|||||+++||+++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus 16 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G~ 95 (201)
T PRK14513 16 RMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVGI 95 (201)
T ss_pred cccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEee
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
|||||++|++||++|||++.|||++|||||++++.|++.|++++|+||+++++.
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~ 149 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDT 149 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998764
No 6
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=1.5e-42 Score=303.01 Aligned_cols=134 Identities=37% Similarity=0.756 Sum_probs=130.5
Q ss_pred hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
+|.|++++|+++|||||+++||+++++.+++||++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+
T Consensus 19 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv~~G~ 98 (200)
T CHL00028 19 TWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTICLGL 98 (200)
T ss_pred ccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEe
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC-CCCCHHHHHHHHHHHHHHhhh
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG-AQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g-~~G~a~Di~i~A~eL~k~~~~ 244 (246)
|||||++|+++|++|+|++.|||++|||||+++ ..|+++|+++++++|+++++.
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~ 153 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRET 153 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 899999999999999998864
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4.9e-42 Score=299.17 Aligned_cols=133 Identities=61% Similarity=0.961 Sum_probs=129.4
Q ss_pred hccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcccc
Q 025891 112 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLA 191 (246)
Q Consensus 112 ~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~A 191 (246)
+.|++++|+++|||||+++||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+|
T Consensus 15 ~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~A 94 (196)
T PRK12551 15 AFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGLA 94 (196)
T ss_pred ccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEEe
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
||||++|+++|++|+|+|.|||++|||||+++..|+++|+++++++|+++++.
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~ 147 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKER 147 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=2.7e-38 Score=273.53 Aligned_cols=134 Identities=63% Similarity=1.021 Sum_probs=129.7
Q ss_pred hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.|++++|+++|||||+|+||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus 15 ~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G~ 94 (191)
T TIGR00493 15 RSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIGQ 94 (191)
T ss_pred ccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
|||||++|+++|++++|+|.|||++|||||+++..|++.|+++++++|.++++.
T Consensus 95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~ 148 (191)
T TIGR00493 95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGL 148 (191)
T ss_pred eccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998999999999999999998864
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=2e-37 Score=269.82 Aligned_cols=131 Identities=36% Similarity=0.671 Sum_probs=126.8
Q ss_pred cHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccch
Q 025891 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 114 dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AAS 193 (246)
+++++|+++|+|||+|+||+++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+|||
T Consensus 15 ~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~AaS 94 (197)
T PRK14512 15 KSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVAS 94 (197)
T ss_pred hHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeHh
Confidence 58999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
||++|+++|++|+|++.|||++|||||++++.|+++|+++++++|+++++.
T Consensus 95 aaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~ 145 (197)
T PRK14512 95 AAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSE 145 (197)
T ss_pred HHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988753
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=3.4e-36 Score=261.84 Aligned_cols=134 Identities=62% Similarity=1.019 Sum_probs=129.8
Q ss_pred hhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 111 ~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
.|.|++++|+++|||||+|+||+++++.++++|++++.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|.
T Consensus 20 ~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~ 99 (200)
T PRK00277 20 RSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTICIGQ 99 (200)
T ss_pred ccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEEEeE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
|+|+|++|+++|++++|++.||+++|||||+++..|++.|++++++++.++++.
T Consensus 100 aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~ 153 (200)
T PRK00277 100 AASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKR 153 (200)
T ss_pred eccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998753
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=2.2e-36 Score=255.66 Aligned_cols=135 Identities=44% Similarity=0.747 Sum_probs=127.9
Q ss_pred hhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 110 ~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G 189 (246)
++|+||+++|+++|+|||.|+||+++++.++++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|
T Consensus 4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G 83 (182)
T PF00574_consen 4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG 83 (182)
T ss_dssp EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence 47899999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
.|+|+|++|+++|++++|++.|+|+||+|+|+.+..|++.|+++++++|.++++.
T Consensus 84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~ 138 (182)
T PF00574_consen 84 LAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNER 138 (182)
T ss_dssp EEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred ccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998753
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.2e-35 Score=259.74 Aligned_cols=132 Identities=55% Similarity=0.911 Sum_probs=127.4
Q ss_pred ccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccc
Q 025891 113 QNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (246)
Q Consensus 113 ~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AA 192 (246)
.|++++|+++|+|||+|+||+++++.|+++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|.|+
T Consensus 26 ~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~aa 105 (207)
T PRK12553 26 SDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQAA 105 (207)
T ss_pred ccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeehh
Confidence 58999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred hHHHHHHccCCCCcEEecCCcEEEEEcCC--CCCCCCHHHHHHHHHHHHHHhhh
Q 025891 193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPL--GGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~--~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
|||++|+++|++|+|++.|||++|||||+ ++..|++.|+++++++|.++++.
T Consensus 106 Saa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~ 159 (207)
T PRK12553 106 SAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRER 159 (207)
T ss_pred hHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 66899999999999999998753
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=1.4e-34 Score=244.70 Aligned_cols=131 Identities=62% Similarity=1.042 Sum_probs=126.8
Q ss_pred cHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccch
Q 025891 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 114 dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AAS 193 (246)
|++++|+++|+|||+|+|++++++.|+++|++++.+++.++|+|+||||||+|++|++|||+|++++.+|+|+|.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 68999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
+|++|+++|++|+|++.|+|++|+|+|+++..|+++|+++.+++|.++++.
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~ 131 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRR 131 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999988899999999999999999999999999999999998764
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=7.9e-33 Score=233.07 Aligned_cols=122 Identities=52% Similarity=0.797 Sum_probs=118.4
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccC
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AG 202 (246)
|+|||+|+|++.+++.|+++|++++.+++.++|+|+||||||+|+++++|||+|+.++.+|+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 79999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhh
Q 025891 203 TKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTL 244 (246)
Q Consensus 203 dkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~ 244 (246)
++|+|++.|++++|||||+++..|++.|+++.++++.++++.
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~ 122 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGN 122 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.92 E-value=3e-24 Score=178.31 Aligned_cols=115 Identities=30% Similarity=0.415 Sum_probs=107.7
Q ss_pred EEEeccccCh---hHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHc
Q 025891 124 IIRCGGPVED---DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS 200 (246)
Q Consensus 124 IIfL~G~Idd---~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~ 200 (246)
-|||+|+||+ .+++.+.++|.+++.+ ++|.|+||||||++.++++|++.|+.++.||+|++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 4899999999 7999999999877643 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhh
Q 025891 201 AGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLT 243 (246)
Q Consensus 201 AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~ 243 (246)
+||+ |++.|+++||+|+|.++..|+..++++..++++++++
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 119 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDE 119 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHH
Confidence 9998 9999999999999999999999999999998887654
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.89 E-value=1.1e-22 Score=174.63 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=107.4
Q ss_pred EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEc---cccchHHHHHHc
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS 200 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~---G~AASaAslIl~ 200 (246)
+|.+.|.|++.....+...|...+ +++.+.|.|+||||||+++++++|||+|++.+.||.|+|. |+|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 578999999998888877776544 3568999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCcEEecCCcEEEEEcCCCCCCCC-----HHHHHHHHHHHHHHhhhc
Q 025891 201 AGTKGKRYSLPNSRIMIHQPLGGAQGG-----QSDIDLQVHIMAYFLTLA 245 (246)
Q Consensus 201 AGdkgkR~a~pnS~iMIHqP~~g~~G~-----a~Di~i~A~eL~k~~~~~ 245 (246)
+|++ |+|.|++++|.|+|..+ .|+ ..|.+++++++.++|++|
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~~A 128 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKSLA 128 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHHHH
Confidence 9999 99999999999999865 366 789999999999999876
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.86 E-value=6.3e-21 Score=157.48 Aligned_cols=117 Identities=33% Similarity=0.545 Sum_probs=106.5
Q ss_pred EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCC
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 203 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGd 203 (246)
||+|+|+|++.+.+.++++|..++.+++.+.|.|++|||||++.++..|+++|+.++.||++++.|.|+|+|++|+++||
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCcEEEEEcCCCCCCCCH--HHHHHHHHHHHHHh
Q 025891 204 KGKRYSLPNSRIMIHQPLGGAQGGQ--SDIDLQVHIMAYFL 242 (246)
Q Consensus 204 kgkR~a~pnS~iMIHqP~~g~~G~a--~Di~i~A~eL~k~~ 242 (246)
+ |++.|++++++|+|..+..|.. .++++..+++..+.
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFI 119 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHH
Confidence 8 9999999999999997766544 67776666665543
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.81 E-value=2.4e-19 Score=153.57 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=92.1
Q ss_pred EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEc---cccchHHHHHHc
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS 200 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~---G~AASaAslIl~ 200 (246)
+|.|.|.|++..++.+.++|..++.+ +.+.|.|+||||||+++++..|++.|+.++.||.+.|. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 68899999999999999999988754 48999999999999999999999999999999999998 999999999999
Q ss_pred cCCCCcEEecCCcEEEEEcCCCCCC
Q 025891 201 AGTKGKRYSLPNSRIMIHQPLGGAQ 225 (246)
Q Consensus 201 AGdkgkR~a~pnS~iMIHqP~~g~~ 225 (246)
+||. |++.|+++|++|+|..+..
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~ 104 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGG 104 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCC
Confidence 9999 9999999999999985433
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.78 E-value=2.5e-18 Score=147.78 Aligned_cols=119 Identities=23% Similarity=0.317 Sum_probs=102.0
Q ss_pred EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCC
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 203 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGd 203 (246)
+|.+.|.|++..+..+...|.....+ +.+.|.|+||||||.++++..|++.|+.++.||++++.|.|+|+|++|+++||
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 67899999999888888877665544 47899999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecCCcEEEEEcCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 025891 204 KGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLA 245 (246)
Q Consensus 204 kgkR~a~pnS~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~~ 245 (246)
+ ++|.|++.++.|.|.....++..+-+.......+++.+|
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~~K~~~~~~~~~~~~A 121 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAADEKVQSYWRAKMRAAA 121 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchhHHHHHHHHHHHHHHH
Confidence 9 999999999999999766555555555555555555554
No 20
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.54 E-value=1.9e-14 Score=133.36 Aligned_cols=103 Identities=27% Similarity=0.319 Sum_probs=86.6
Q ss_pred EEEeccccChhH-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCC--CeEEEEccccchH
Q 025891 124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRP--DVSTVCVGLAASM 194 (246)
Q Consensus 124 IIfL~G~Idd~~-------A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~--~V~Tvv~G~AASa 194 (246)
+|.+.|.|.... .+.+.+.|..+..+++.+.|.|+||||||+|.++..||++|+.++. ||++++.++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 677888887533 5566677777788888999999999999999999999999999987 5999999999999
Q ss_pred HHHHHccCCCCcEEecCCcEEEEEcCCCCCCCCHHHHH
Q 025891 195 GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDID 232 (246)
Q Consensus 195 AslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~a~Di~ 232 (246)
|++|+|+||+ ++|.|+|.+. +-|+.++..++.
T Consensus 143 GY~IA~aAd~--I~a~p~si~G----SIGVi~~~~~~~ 174 (317)
T COG0616 143 GYYIALAADK--IVADPSSITG----SIGVISGAPNFE 174 (317)
T ss_pred hhhhhccCCE--EEecCCceee----eceeEEecCCHH
Confidence 9999999999 9999999987 444444444443
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.38 E-value=3e-12 Score=111.40 Aligned_cols=91 Identities=21% Similarity=0.338 Sum_probs=82.9
Q ss_pred EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC--CCeEEEEccccchHHHHHHcc
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAASMGAFLLSA 201 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k--~~V~Tvv~G~AASaAslIl~A 201 (246)
+|.|.|.|+ .+.+.+.+.|..+..++..+.|.|++|||||++..+..|++.|+.++ .||++++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 788999998 55677888888887777789999999999999999999999999998 899999999999999999999
Q ss_pred CCCCcEEecCCcEEEE
Q 025891 202 GTKGKRYSLPNSRIMI 217 (246)
Q Consensus 202 GdkgkR~a~pnS~iMI 217 (246)
||+ |+|.|++.++.
T Consensus 83 aD~--i~a~p~a~vg~ 96 (207)
T TIGR00706 83 ADE--IVANPGTITGS 96 (207)
T ss_pred CCE--EEECCCCeEEe
Confidence 999 99999998654
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.35 E-value=5.1e-12 Score=109.44 Aligned_cols=92 Identities=28% Similarity=0.379 Sum_probs=84.4
Q ss_pred cEEEeccccC---hhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhh---CCCeEEEEccccchHHH
Q 025891 123 RIIRCGGPVE---DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGA 196 (246)
Q Consensus 123 RIIfL~G~Id---d~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~---k~~V~Tvv~G~AASaAs 196 (246)
-+|+|.|.|+ +.+...+..+|..+..++..+.|.|++|||||++..+..|+++|+.+ +.||++++.|.|+|+|+
T Consensus 3 ~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~ 82 (208)
T cd07023 3 AVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGY 82 (208)
T ss_pred EEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHH
Confidence 3789999999 78899999999999887789999999999999999999999988766 46999999999999999
Q ss_pred HHHccCCCCcEEecCCcEEE
Q 025891 197 FLLSAGTKGKRYSLPNSRIM 216 (246)
Q Consensus 197 lIl~AGdkgkR~a~pnS~iM 216 (246)
+|+++||+ |++.|++.+.
T Consensus 83 ~lA~aaD~--i~a~~~s~~g 100 (208)
T cd07023 83 YIAAAADK--IVANPTTITG 100 (208)
T ss_pred HHHhhCCE--EEECCCCeEE
Confidence 99999999 9999999883
No 23
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.26 E-value=1.6e-11 Score=122.29 Aligned_cols=90 Identities=28% Similarity=0.335 Sum_probs=79.0
Q ss_pred EEEeccccChh-------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC---CCeEEEEccccch
Q 025891 124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAAS 193 (246)
Q Consensus 124 IIfL~G~Idd~-------~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k---~~V~Tvv~G~AAS 193 (246)
+|++.|+|.+. ..+.+.++|..+..++..+.|.|+||||||++.++..|+++|+..+ .||++.+.|+|||
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 89999999752 2456777777777666789999999999999999999999998664 7899999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEE
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRI 215 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~i 215 (246)
+|++|+++||+ ++|.|++.+
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~ 411 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTIT 411 (584)
T ss_pred HHHHHHHhCCE--EEECCCCee
Confidence 99999999999 999999987
No 24
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.22 E-value=4.3e-11 Score=110.09 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=79.4
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEE
Q 025891 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRY 208 (246)
Q Consensus 129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~ 208 (246)
..||.+.++.+...+. ..++.++|.|.||||||.|.++..|.+.|+.++.+++++|...|.|+|++|+++||+ ++
T Consensus 70 ~~I~i~dse~v~raI~---~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe--Iv 144 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIR---EAPKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE--IV 144 (285)
T ss_pred eeEcHhhHHHHHHHHH---hcCCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe--EE
Confidence 4477777888877664 334567899999999999999999999999999999999999999999999999999 99
Q ss_pred ecCCcEEEEEcCCCC
Q 025891 209 SLPNSRIMIHQPLGG 223 (246)
Q Consensus 209 a~pnS~iMIHqP~~g 223 (246)
|.|+|.++--.|..+
T Consensus 145 M~p~a~LGpiDPqi~ 159 (285)
T PF01972_consen 145 MGPGAVLGPIDPQIG 159 (285)
T ss_pred ECCCCccCCCCcccc
Confidence 999999997777643
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.21 E-value=8.8e-11 Score=102.57 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=80.7
Q ss_pred EEEeccccCh-----------hHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC--CCeEEEEccc
Q 025891 124 IIRCGGPVED-----------DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGL 190 (246)
Q Consensus 124 IIfL~G~Idd-----------~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k--~~V~Tvv~G~ 190 (246)
+|.+.|.|.+ .+...+.++|..++.++..+.|.|.+|||||++.....|+++|+.++ .||++++.|.
T Consensus 4 vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~ 83 (214)
T cd07022 4 VIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGL 83 (214)
T ss_pred EEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4555566654 45678889999888877889999999999999999999999999998 9999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEE
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMI 217 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMI 217 (246)
|+|+|++|+++||+ +++.|++.+..
T Consensus 84 a~s~gy~lA~~aD~--i~a~~~a~~g~ 108 (214)
T cd07022 84 AASAAYWIASAADR--IVVTPTAGVGS 108 (214)
T ss_pred hhhHHHHHHhcCCE--EEEcCCCeEEe
Confidence 99999999999998 99999999643
No 26
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.18 E-value=9.1e-11 Score=110.24 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=71.1
Q ss_pred EEEeccccChhHHHHHHHHHHhh-hhcCCCCCeEEEEeCCCCCHHHHHHHHHH---HhhhCCCeEEEEccccchHHHHHH
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYL-DAVDPNKDIIMYLNSPGGSVTAGMAIFDT---IRHIRPDVSTVCVGLAASMGAFLL 199 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L-~~~d~~k~I~L~INSPGGsV~aGlaIyD~---Ir~~k~~V~Tvv~G~AASaAslIl 199 (246)
+|.+.|.|+......+.+++..+ +...+.+.|.|.||||||+|.+.-.++.. ++..+.||++++.++|||+|++|+
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 67789999976554444444432 22333478999999999999875555544 444557999999999999999999
Q ss_pred ccCCCCcEEecCCcEEEE
Q 025891 200 SAGTKGKRYSLPNSRIMI 217 (246)
Q Consensus 200 ~AGdkgkR~a~pnS~iMI 217 (246)
|+||+ +++.|.+.++.
T Consensus 174 saAD~--I~A~P~a~vGS 189 (330)
T PRK11778 174 CVADK--IIAAPFAIVGS 189 (330)
T ss_pred HhCCE--EEECCCCeEEe
Confidence 99999 99999999874
No 27
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.17 E-value=1.4e-10 Score=98.09 Aligned_cols=87 Identities=25% Similarity=0.210 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhh---CCCeEEEEccccchHHHHHHccCCCCcEEecC
Q 025891 135 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLP 211 (246)
Q Consensus 135 ~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~---k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~p 211 (246)
+.+.+.++|..++.++..+.|.|.+|||||++.....|+++++.+ +.||.+++.|.|+|+|+.|+++||. |+|.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 356788888888877778999999999999999888887766554 6899999999999999999999999 99999
Q ss_pred CcEEEEEcCCCC
Q 025891 212 NSRIMIHQPLGG 223 (246)
Q Consensus 212 nS~iMIHqP~~g 223 (246)
++.|++|....+
T Consensus 101 ~a~~~~~G~~~~ 112 (177)
T cd07014 101 STLVGSIGIFGV 112 (177)
T ss_pred CCeEEEechHhh
Confidence 999999977654
No 28
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.3e-10 Score=112.31 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=87.6
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEc---cccchHHHHHH
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLL 199 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~---G~AASaAslIl 199 (246)
.++.+.|+||+.+++.+...|..-+. +....+.|.+|+|||-+++...|..+|...+.||+.++. ++|+|+|++|+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence 46889999999999999988875544 346899999999999999999999999999999887764 48999999999
Q ss_pred ccCCCCcEEecCCcEEEEEcCCCC
Q 025891 200 SAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 200 ~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
++++. .+|.|++.+.--+|-.+
T Consensus 108 m~~hi--aaMAPgT~iGaa~Pi~~ 129 (436)
T COG1030 108 MATHI--AAMAPGTNIGAATPIAG 129 (436)
T ss_pred HhcCh--hhhCCCCcccccceecC
Confidence 99999 99999999999999854
No 29
>PRK10949 protease 4; Provisional
Probab=99.16 E-value=1e-10 Score=117.52 Aligned_cols=91 Identities=27% Similarity=0.299 Sum_probs=80.5
Q ss_pred EEEeccccChh-------HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC---CCeEEEEccccch
Q 025891 124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAAS 193 (246)
Q Consensus 124 IIfL~G~Idd~-------~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k---~~V~Tvv~G~AAS 193 (246)
||++.|.|.+. ..+.+.++|.....++..|.|.|+||||||++.+...|++.|+..+ .||++.+.++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 78999999752 2567888888888788899999999999999999999999997664 6899999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEE
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIM 216 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iM 216 (246)
+|++|+++||+ +++.|.+.++
T Consensus 410 ggY~iA~aad~--I~a~p~t~tG 430 (618)
T PRK10949 410 GGYWISTPANY--IVASPSTLTG 430 (618)
T ss_pred HHHHHHHhcCE--EEECCCCcee
Confidence 99999999999 9999988765
No 30
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.12 E-value=3.6e-10 Score=98.67 Aligned_cols=92 Identities=25% Similarity=0.259 Sum_probs=79.6
Q ss_pred EEEeccccChhH-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhh---hCCCeEEEEccccch
Q 025891 124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH---IRPDVSTVCVGLAAS 193 (246)
Q Consensus 124 IIfL~G~Idd~~-------A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~---~k~~V~Tvv~G~AAS 193 (246)
||.+.|+|.+.. ...+.+.|..+..++..+.|.|.+|||||++.+...|+++|+. .+.||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 688888887643 3678888888888777899999999999999999999887654 567999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEE
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMI 217 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMI 217 (246)
+|++|+++||+ +++.|++++..
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~gs 105 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTGS 105 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEEE
Confidence 99999999999 99999998853
No 31
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.88 E-value=8e-09 Score=90.87 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=77.9
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhh---CCCeEEEEccccchHHHHHHccCCCC
Q 025891 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKG 205 (246)
Q Consensus 129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~---k~~V~Tvv~G~AASaAslIl~AGdkg 205 (246)
+..+......++++|..+..++..+.|.|.+|||||.+.+...|++.|+.. +.||++++.| |+|+|++|+++||+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~- 101 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE- 101 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE-
Confidence 344556677889999988887779999999999999999999999999765 4799999997 99999999999999
Q ss_pred cEEecCCcEEEEEcC
Q 025891 206 KRYSLPNSRIMIHQP 220 (246)
Q Consensus 206 kR~a~pnS~iMIHqP 220 (246)
++|.|++.+++.-.
T Consensus 102 -I~a~p~~~vg~iGv 115 (222)
T cd07018 102 -IYLNPSGSVELTGL 115 (222)
T ss_pred -EEECCCceEEeecc
Confidence 99999999998643
No 32
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.28 E-value=3.7e-06 Score=75.51 Aligned_cols=100 Identities=22% Similarity=0.199 Sum_probs=76.8
Q ss_pred hccCcE--EEeccccChhHHHHHHHHHHhhhhcCCCCCeE-EEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHH
Q 025891 119 LFQHRI--IRCGGPVEDDMANIIVAQLLYLDAVDPNKDII-MYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMG 195 (246)
Q Consensus 119 L~~~RI--IfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~-L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaA 195 (246)
.++.|. |.+.+++-+..+....+.|. + ..+..-++ +.+|||||+|..++++-..|+..+.++..--..+|+|++
T Consensus 71 ~~dgr~l~VvVse~~a~~da~sal~~li--r-~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaC 147 (245)
T COG3904 71 TLDGRQLPVVVSEPGANVDAASALGRLI--R-KAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASAC 147 (245)
T ss_pred hccCceeeEEEcCCCCCccHHHHHHHHH--h-ccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccc
Confidence 455665 44566665544443444442 2 22333444 789999999999999999999999887777778999999
Q ss_pred HHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 196 AFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 196 slIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.++|++|.. |++.+.+.+.+||+...
T Consensus 148 pl~fagGvr--Rvve~~ayiGVHq~~~~ 173 (245)
T COG3904 148 PLMFAGGVR--RVVEDFAYIGVHQITTT 173 (245)
T ss_pred hhhhhccee--eeecccceeeeeecccc
Confidence 999999998 99999999999999853
No 33
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.82 E-value=6.3e-05 Score=75.55 Aligned_cols=84 Identities=12% Similarity=0.022 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHhhhhcCCCCCeEEEEeC-CCCCHHHHHHHHHHHhhhC---CCeEEEEccccchHHHHHHccCCCCcEEe
Q 025891 134 DMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKRYS 209 (246)
Q Consensus 134 ~~A~~iiaqLl~L~~~d~~k~I~L~INS-PGGsV~aGlaIyD~Ir~~k---~~V~Tvv~G~AASaAslIl~AGdkgkR~a 209 (246)
.....++.+|.....++..+.|.|.||+ |||.+.....|+++|+..+ .||+++..+. +|.+++|++++|+ +++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD~--I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFADE--IIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCCE--EEE
Confidence 4566788999888888889999999996 6778888889999998775 6899987764 7999999999999 999
Q ss_pred cCCcEEEEEcC
Q 025891 210 LPNSRIMIHQP 220 (246)
Q Consensus 210 ~pnS~iMIHqP 220 (246)
.|.+.++++-.
T Consensus 153 ~p~G~v~~~G~ 163 (584)
T TIGR00705 153 NPMGSVDLHGF 163 (584)
T ss_pred CCCceEEeece
Confidence 99999987643
No 34
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=97.80 E-value=0.00014 Score=61.12 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=70.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHH-----------------HHHHHHHHHhhhCCCeEEEEcc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----------------AGMAIFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~-----------------aGlaIyD~Ir~~k~~V~Tvv~G 189 (246)
+|.++.+.+.+.|..++.++..+-|.|.-+ |.|+++. ....++..|..++.||.+.+.|
T Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 23 LSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 567788888888888876555555555444 4455543 2244566777888999999999
Q ss_pred ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA 224 (246)
Q Consensus 190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~ 224 (246)
.|.+.|+.++++||. |++.++++|.+.....|.
T Consensus 103 ~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~ 135 (195)
T cd06558 103 AALGGGLELALACDI--RIAAEDAKFGLPEVKLGL 135 (195)
T ss_pred eeecHHHHHHHhCCE--EEecCCCEEechhhhcCC
Confidence 999999999999999 999999999988876553
No 35
>PRK10949 protease 4; Provisional
Probab=97.68 E-value=0.00012 Score=74.19 Aligned_cols=86 Identities=19% Similarity=0.130 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHH-HHHHHHHhhhC---CCeEEEEccccchHHHHHHccCCCCcEE
Q 025891 133 DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-MAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKRY 208 (246)
Q Consensus 133 d~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aG-laIyD~Ir~~k---~~V~Tvv~G~AASaAslIl~AGdkgkR~ 208 (246)
+....+++++|.....++..+.|.|.||+|||...+. ..|+++|+..+ .||+++ ...+++.+++|+++||+ ++
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence 3445678888888888888999999999999876655 68999998775 588886 55567999999999999 99
Q ss_pred ecCCcEEEEEcCC
Q 025891 209 SLPNSRIMIHQPL 221 (246)
Q Consensus 209 a~pnS~iMIHqP~ 221 (246)
+.|.+.+.++-..
T Consensus 171 l~P~G~v~~~G~~ 183 (618)
T PRK10949 171 LSPQGVVDLHGFA 183 (618)
T ss_pred ECCCceEEEeeee
Confidence 9999999877544
No 36
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=97.35 E-value=0.0017 Score=57.78 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=66.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHH--------------HHHHHHHHhhhCCCeEEEEccccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLAA 192 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~a--------------GlaIyD~Ir~~k~~V~Tvv~G~AA 192 (246)
++.++.+.+.+.|..++.++..+-|.|. .=|.|+++.+ ...+++.|..++.||.+.+.|.|.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~ 108 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV 108 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence 6778888888888777654434434332 1134444322 234666788889999999999999
Q ss_pred hHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+.|..|+++||- |++.++++|.+....-|
T Consensus 109 GgG~~lal~cD~--ria~~~a~f~~pe~~~G 137 (259)
T PRK06688 109 GVGVSLALACDL--VYASESAKFSLPFAKLG 137 (259)
T ss_pred cHHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence 999999999999 99999999988665544
No 37
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=97.24 E-value=0.003 Score=57.24 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=66.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-------------------HHHHHHHhhhCCCeEEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-------------------laIyD~Ir~~k~~V~Tvv 187 (246)
++.++...+.+.|..++.++..+-|.|.=+ |-|+++.+. ..+++.|..++.||.+.+
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 120 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV 120 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 677777778877776664333332222111 344554321 135667788899999999
Q ss_pred ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA 224 (246)
Q Consensus 188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~ 224 (246)
.|.|.+.|.-|+++||- |++.++++|.+.....|.
T Consensus 121 ~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl 155 (277)
T PRK08258 121 DGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGL 155 (277)
T ss_pred CCeeehHHHHHHHhCCE--EEecCCCEEeccccccCc
Confidence 99999999999999999 999999999987776554
No 38
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.17 E-value=0.0028 Score=59.80 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=72.5
Q ss_pred cCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHH-------HHHHHHHHh---hhCCCeEEEEccc
Q 025891 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGL 190 (246)
Q Consensus 121 ~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a-------GlaIyD~Ir---~~k~~V~Tvv~G~ 190 (246)
++++-...|.++++....... +..+-. .-.-||.-.|||||..+.. +.+|...+. ..+.|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~-~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALR-LMKMAE-RFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 455555667788866554433 332322 2267999999999987322 334555554 5568999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|+|+|++.+..+|. ++|.|++.+.+-.|.+.
T Consensus 200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~ 230 (316)
T TIGR00513 200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGC 230 (316)
T ss_pred cccHHHhhhccCCE--EEEecCceEEecCHHHH
Confidence 99999999988988 99999999999988764
No 39
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=97.17 E-value=0.0039 Score=55.63 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=67.9
Q ss_pred EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH------------HHHHHHHHhhhCCC
Q 025891 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------GMAIFDTIRHIRPD 182 (246)
Q Consensus 124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a------------GlaIyD~Ir~~k~~ 182 (246)
+|.|+-| ++.++.+.+.+.+..++.++..+-|.|.= =|.|+++.+ ...++..|..++.|
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kP 91 (248)
T PRK06072 12 IVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKI 91 (248)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCC
Confidence 3455543 67788888888887776543333232221 134455532 12245567778899
Q ss_pred eEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 183 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 183 V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.+.+.|.|.++|..|+++||- |++.++++|.+.....|
T Consensus 92 vIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~G 130 (248)
T PRK06072 92 YISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLG 130 (248)
T ss_pred EEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcC
Confidence 9999999999999999999999 99999999987655544
No 40
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=97.17 E-value=0.004 Score=55.76 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=70.4
Q ss_pred EEEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHHH-----------------HHHHHHH
Q 025891 124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTAG-----------------MAIFDTI 176 (246)
Q Consensus 124 IIfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~aG-----------------laIyD~I 176 (246)
+|.|+.| ++.++.+.+.+.|..++.++..+-|.| .+.| +++.+- ..+++.|
T Consensus 16 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl--~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (257)
T PRK06495 16 VVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVL--TGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAI 93 (257)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEE--ECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHH
Confidence 3556655 677778888888877765443333333 3333 333220 2245667
Q ss_pred hhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCCC
Q 025891 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGG 227 (246)
Q Consensus 177 r~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G~ 227 (246)
..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+-...-|..|.
T Consensus 94 ~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~ 142 (257)
T PRK06495 94 RECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGG 142 (257)
T ss_pred HhCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCcccc
Confidence 7888999999999999999999999999 999999999876666555443
No 41
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.16 E-value=0.0032 Score=59.54 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=70.4
Q ss_pred cCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHH-------HHHHHHHHh---hhCCCeEEEEccc
Q 025891 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGL 190 (246)
Q Consensus 121 ~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a-------GlaIyD~Ir---~~k~~V~Tvv~G~ 190 (246)
++++-..+|.++++....... +..+-. .-.-||.-.|||||..+.. +.+|...+. ..+.|+.+++.|-
T Consensus 122 ~e~~~~~~G~~~peg~rKa~R-~m~lA~-~f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe 199 (319)
T PRK05724 122 KEKIRRNFGMPRPEGYRKALR-LMKMAE-KFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE 199 (319)
T ss_pred cccccccCCCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 444445567777765544432 222221 2267999999999966421 234444444 5668999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|+|++.+..+|. .+|.|++.+.+-.|.+.
T Consensus 200 g~sGGAla~~~aD~--v~m~~~A~~svisPEg~ 230 (319)
T PRK05724 200 GGSGGALAIGVGDR--VLMLEYSTYSVISPEGC 230 (319)
T ss_pred ccHHHHHHHhccCe--eeeecCceEeecCHHHH
Confidence 99999999999998 99999999999888754
No 42
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=97.13 E-value=0.0039 Score=55.75 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=67.0
Q ss_pred EEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC------CCCCHHHH------------------HHHHHH
Q 025891 125 IRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTAG------------------MAIFDT 175 (246)
Q Consensus 125 IfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS------PGGsV~aG------------------laIyD~ 175 (246)
|.|+.+ ++.++.+.+.+.|..++.++..+- |.|.+ .|+++.+. ..++..
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~--vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (260)
T PRK07511 16 LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRA--VVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRA 93 (260)
T ss_pred EEECCcccccCCCHHHHHHHHHHHHHhccCCCeEE--EEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 455555 677777778777776664433332 23333 34443321 235566
Q ss_pred HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|..++.||.+.+.|.|.+.|..|+++||- |++.++++|.+..-.-|
T Consensus 94 l~~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 139 (260)
T PRK07511 94 IRAFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVG 139 (260)
T ss_pred HHcCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccC
Confidence 77888999999999999999999999999 99999999987665544
No 43
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.09 E-value=0.0033 Score=59.50 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=69.8
Q ss_pred CcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHH-------HHHHHHHHH---hhhCCCeEEEEcccc
Q 025891 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLA 191 (246)
Q Consensus 122 ~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------aGlaIyD~I---r~~k~~V~Tvv~G~A 191 (246)
+++-..+|..+++-...... +..+-. .-.-||.-.|||||..+. .+.+|...+ ...+.|+.+++.|-|
T Consensus 126 e~~~~~~G~~~p~g~rKa~R-lm~lA~-~f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeg 203 (322)
T CHL00198 126 ENVLRNFGMPSPGGYRKALR-LMKHAN-KFGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEG 203 (322)
T ss_pred hhhhhcCCCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence 34433456666765544432 222222 226799999999997642 233555544 455789999999999
Q ss_pred chHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|+|++.++.+|. ++|.+++.+.+-.|.+.
T Consensus 204 gsGGAlal~~aD~--V~m~e~a~~sVisPEg~ 233 (322)
T CHL00198 204 GSGGALGIGIGDS--IMMLEYAVYTVATPEAC 233 (322)
T ss_pred cHHHHHhhhcCCe--EEEeCCeEEEecCHHHH
Confidence 9999999999998 99999999999999653
No 44
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=97.09 E-value=0.004 Score=56.05 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=43.5
Q ss_pred HHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 173 yD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
++.|..++.||.+.+.|.|.+.|.-|+++||- |++.++++|.+....-|
T Consensus 101 ~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 149 (272)
T PRK06210 101 YHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRG 149 (272)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcC
Confidence 46677889999999999999999999999999 99999999987766544
No 45
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=97.08 E-value=0.0043 Score=55.65 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
++..|..++.||.+.+.|.|.++|..|+++||- |++.++++|.+..+.-|
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG 144 (266)
T PRK05981 95 FLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIG 144 (266)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcC
Confidence 556778889999999999999999999999999 99999999987776644
No 46
>PRK05869 enoyl-CoA hydratase; Validated
Probab=97.07 E-value=0.0057 Score=54.00 Aligned_cols=95 Identities=21% Similarity=0.183 Sum_probs=68.8
Q ss_pred EEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCCHHHH---------------HHHHHHHhhh
Q 025891 125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTAG---------------MAIFDTIRHI 179 (246)
Q Consensus 125 IfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP------GGsV~aG---------------laIyD~Ir~~ 179 (246)
|.++.+ ++.++...+.+.|..++.++..+-|.| .+. |+++... ..+++.|..+
T Consensus 21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (222)
T PRK05869 21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVIL--YGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI 98 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence 445555 677778888888887776544443333 333 3443221 2356678888
Q ss_pred CCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 180 RPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 180 k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+.||.+.+.|.|.++|..|+++||. |++.++++|.+-...-|
T Consensus 99 ~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 140 (222)
T PRK05869 99 PKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAG 140 (222)
T ss_pred CCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccC
Confidence 9999999999999999999999999 99999999887655544
No 47
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=97.07 E-value=0.0042 Score=55.78 Aligned_cols=94 Identities=18% Similarity=0.140 Sum_probs=64.0
Q ss_pred EEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEE-----EeCCCCCHHH--------------HHHHHHHHhhhCC
Q 025891 125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMY-----LNSPGGSVTA--------------GMAIFDTIRHIRP 181 (246)
Q Consensus 125 IfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~-----INSPGGsV~a--------------GlaIyD~Ir~~k~ 181 (246)
|.|+-+ ++.++.+.+.+.|..++.++..+-|.|. .=|.|+++.+ ...++..|..++.
T Consensus 16 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 95 (261)
T PRK03580 16 ITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDK 95 (261)
T ss_pred EEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCC
Confidence 445554 5667777777777766654323323321 1133444432 1234566778899
Q ss_pred CeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcC
Q 025891 182 DVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQP 220 (246)
Q Consensus 182 ~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP 220 (246)
||.+.+.|.|.++|.-|+++||- |++.++++|.+=..
T Consensus 96 PvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~ 132 (261)
T PRK03580 96 PVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEA 132 (261)
T ss_pred CEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCccc
Confidence 99999999999999999999999 99999998865433
No 48
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=97.02 E-value=0.005 Score=55.31 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=64.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHH---------------HHHHHHHHhhhCCCeEEEEccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.++.+.+.+.|..++.++..+-|.|.= =|.|+++.+ ...+++.|..++.||.+.+.|.
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 110 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGW 110 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence 67788888888887776544333333321 123344322 1235667778899999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.+.|.-|+++||- |++.++++|.+=....|
T Consensus 111 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 141 (256)
T PRK06143 111 CLGGGLELAAACDL--RIAAHDAQFGMPEVRVG 141 (256)
T ss_pred EeehhHHHHHhCCE--EEecCCCEEeCCccccC
Confidence 99999999999999 99999998876444433
No 49
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=97.01 E-value=0.006 Score=54.51 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=63.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe------CCCCCHHHH----------------------HHHHHHHhhhCCC
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTAG----------------------MAIFDTIRHIRPD 182 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN------SPGGsV~aG----------------------laIyD~Ir~~k~~ 182 (246)
++.++.+.+.+.|..++.++..+-|. |. |.|+++..- ..++..|+.++.|
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vv--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp 104 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDRGIRAVI--LSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP 104 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEE--EECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 67788888888887776543333233 33 334444321 1133456778999
Q ss_pred eEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 183 VSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 183 V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.+.+.|.|.++|.-|+++||- |++.++++|.+.....|
T Consensus 105 vIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 143 (262)
T PRK07509 105 VIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWG 143 (262)
T ss_pred EEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccC
Confidence 9999999999999999999999 99999999988765544
No 50
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=97.00 E-value=0.0067 Score=54.77 Aligned_cols=89 Identities=16% Similarity=0.035 Sum_probs=64.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS 193 (246)
++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++.+ ...+++.|..++.||.+.+.|.|.+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G 107 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT 107 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence 677788888888877765433333333211 44555432 1245677888899999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
+|.-|+++||- |++.++++|.+=...
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~ 133 (258)
T PRK06190 108 GGLELALACDI--LIASERARFADTHAR 133 (258)
T ss_pred HHHHHHHhCCE--EEEeCCCEEECcccc
Confidence 99999999999 999999998754443
No 51
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=97.00 E-value=0.0057 Score=53.86 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=67.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCH---------------HHHHHHHHHHhhhCCCeEEEEcc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSV---------------TAGMAIFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV---------------~aGlaIyD~Ir~~k~~V~Tvv~G 189 (246)
++.++.+.+.+.|..++.++..+ .|.|.+.| +++ .....++..|..++.||.+.+.|
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G 99 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG 99 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence 67888889999998888765444 44444444 443 23345677888889999999999
Q ss_pred ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|.+.|..++++||- |++.+++.|.+-...-|
T Consensus 100 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 131 (245)
T PF00378_consen 100 HAVGGGFELALACDF--RIAAEDAKFGFPEVRLG 131 (245)
T ss_dssp EEETHHHHHHHHSSE--EEEETTTEEETGGGGGT
T ss_pred cccccccccccccce--EEeecccceeeeecccC
Confidence 999999999999999 99999999766554444
No 52
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=97.00 E-value=0.0062 Score=54.62 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=67.5
Q ss_pred EEeccc----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------HHHHHHHHhhhCCCeE
Q 025891 125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------GMAIFDTIRHIRPDVS 184 (246)
Q Consensus 125 IfL~G~----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------GlaIyD~Ir~~k~~V~ 184 (246)
|.++.+ ++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++.+ ...++..|..++.||.
T Consensus 14 itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 93 (251)
T TIGR03189 14 LRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPIL 93 (251)
T ss_pred EEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 456655 777888888888877765443333333211 33444432 0134556778889999
Q ss_pred EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+.+.|.|.++|.-|+++||- |++.++++|.+=...-|
T Consensus 94 aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 130 (251)
T TIGR03189 94 VAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLG 130 (251)
T ss_pred EEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcC
Confidence 99999999999999999999 99999998877544433
No 53
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=96.98 E-value=0.0066 Score=54.31 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=64.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS 193 (246)
++.++.+.+.+.+..++.++..+-|.|.= =|.|+++.+ ...+++.|..++.||.+.+.|.|.+
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G 105 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG 105 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence 56777777877777666543333233211 133444432 1235667888899999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+|.-|+++||- |++.++++|.+-...-|
T Consensus 106 gG~~lalacD~--~ia~~~a~f~~pe~~~G 133 (255)
T PRK09674 106 AGCELALLCDI--VIAGENARFGLPEITLG 133 (255)
T ss_pred HHHHHHHhCCE--EEecCCCEEeCchhhcC
Confidence 99999999999 99999999987665544
No 54
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=96.95 E-value=0.0071 Score=54.32 Aligned_cols=91 Identities=13% Similarity=0.117 Sum_probs=61.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++...+.+.|..++.++..+-|.|.=+ |-|+++.+ ...+++.|+.++.||.+.+.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 108 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 566666777776665554332233333211 22344321 01256778888999999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|.+.|.-|+++||- |++.++++|.+-...-|
T Consensus 109 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~G 141 (262)
T PRK07468 109 GQAFGGGVGLISVCDV--AIAVSGARFGLTETRLG 141 (262)
T ss_pred CEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccC
Confidence 9999999999999999 99999998876554433
No 55
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.95 E-value=0.0037 Score=64.66 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=58.2
Q ss_pred CCCeEEEEeCCCCCHH-------HHHHHHHHHh---hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 152 NKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 152 ~k~I~L~INSPGGsV~-------aGlaIyD~Ir---~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
.-||.-.|||||..+. .+-+|...+. ....|+.+++.|-|+|+|++.++.||. ++|.+++.+.+-.|-
T Consensus 242 gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~--VlMle~A~~sVisPE 319 (762)
T PLN03229 242 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANK--LLMLENAVFYVASPE 319 (762)
T ss_pred CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCE--EEEecCCeEEecCHH
Confidence 6799999999998752 3445655555 456899999999999999999999999 999999999988887
Q ss_pred CC
Q 025891 222 GG 223 (246)
Q Consensus 222 ~g 223 (246)
+.
T Consensus 320 ga 321 (762)
T PLN03229 320 AC 321 (762)
T ss_pred HH
Confidence 54
No 56
>PLN02600 enoyl-CoA hydratase
Probab=96.95 E-value=0.0067 Score=54.24 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=62.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH---------------HHHHHHHHhhhCCCeEEEEccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.++.+.+.+.+..++.++..+-|.|.=. |.|+++.+ ...+++.|..++.||.+.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 677777888877777765443333333210 33444432 1124556777889999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
|.++|.-|+++||- |++.++++|.+-...
T Consensus 99 a~GgG~~lala~D~--~ia~~~a~f~~pe~~ 127 (251)
T PLN02600 99 ALGGGLELALSCDL--RICGEEAVFGLPETG 127 (251)
T ss_pred ecchhHHHHHhCCE--EEeeCCCEEeCcccc
Confidence 99999999999999 999999999874433
No 57
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=96.94 E-value=0.0063 Score=55.13 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=63.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC------CCCCHHHH--------------------------HHHHHHHhh
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTAG--------------------------MAIFDTIRH 178 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS------PGGsV~aG--------------------------laIyD~Ir~ 178 (246)
++.++.+.+.+.|..++.++..+-| .|-+ -|+++.+- ..+++.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vrvv--Vltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (275)
T PLN02664 32 LSLDFFTEFPKALSSLDQNPNVSVI--ILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQ 109 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEE--EEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 6777788888877777654433322 2232 33444311 134566788
Q ss_pred hCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 179 IRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 179 ~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
++.||.+.+.|.|.++|..|+++||- |++.++++|.+-...-|
T Consensus 110 ~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 152 (275)
T PLN02664 110 CRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLA 152 (275)
T ss_pred CCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhC
Confidence 89999999999999999999999999 99999999987554444
No 58
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=96.94 E-value=0.0072 Score=54.19 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=63.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHHH--------------HHHHHHHhhhCCCeEEEEcccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAG--------------MAIFDTIRHIRPDVSTVCVGLA 191 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~aG--------------laIyD~Ir~~k~~V~Tvv~G~A 191 (246)
++.++.+.+.+.|..++.++..+-|.|.= =|.|+++.+- ..+++.|..++.||.+.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 56677777777777666544333333321 1334554321 2356678888999999999999
Q ss_pred chHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.++|.-|+++||- |++.++++|.+=.+.-|
T Consensus 106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 135 (256)
T TIGR03210 106 IGGGNVLVTICDL--TIASEKAQFGQVGPKVG 135 (256)
T ss_pred ehhhHHHHHhCCE--EEEeCCCEEeccccccc
Confidence 9999999999999 99999999987544433
No 59
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=96.93 E-value=0.0078 Score=54.54 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=60.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH----------------------HHHHHHHhhhCCCeE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------------MAIFDTIRHIRPDVS 184 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG----------------------laIyD~Ir~~k~~V~ 184 (246)
++.++.+.+.+.|..++.++..+-|.|.= =|.|+++.+. ..+++.|..++.||.
T Consensus 34 l~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 113 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVI 113 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 66777777777777666443233222211 1334444321 124556778899999
Q ss_pred EEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 185 TVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 185 Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
+.+.|.|.++|.-|+++||- |++.++++|.+-...
T Consensus 114 aav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~ 148 (276)
T PRK05864 114 AAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGIN 148 (276)
T ss_pred EEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccc
Confidence 99999999999999999999 999999988754433
No 60
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=96.93 E-value=0.006 Score=54.38 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=61.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC------CCCCHHH----------HHHHHHHHhhhCCCeEEEEccccchH
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTA----------GMAIFDTIRHIRPDVSTVCVGLAASM 194 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS------PGGsV~a----------GlaIyD~Ir~~k~~V~Tvv~G~AASa 194 (246)
++.++..++.+.+..++. +..+ .|.|-+ .|+++.+ ...+++.|..++.||.+.+.|.|.++
T Consensus 24 l~~~~~~~l~~al~~~~~-~~vr--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~Gg 100 (243)
T PRK07854 24 LNAELCEELREAVRKAVD-ESAR--AIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGA 100 (243)
T ss_pred CCHHHHHHHHHHHHHHhc-CCce--EEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCccccc
Confidence 788888888888876663 2232 233333 3455431 12356677788999999999999999
Q ss_pred HHHHHccCCCCcEEecCCcEEEEEc
Q 025891 195 GAFLLSAGTKGKRYSLPNSRIMIHQ 219 (246)
Q Consensus 195 AslIl~AGdkgkR~a~pnS~iMIHq 219 (246)
|..|+++||- |++.++++|.+=.
T Consensus 101 G~~lal~cD~--~ia~~~a~f~~pe 123 (243)
T PRK07854 101 GLQLAMACDL--RVVAPEAYFQFPV 123 (243)
T ss_pred HHHHHHhCCE--EEEcCCCEEeccc
Confidence 9999999999 9999999987533
No 61
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=96.92 E-value=0.0048 Score=55.09 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=65.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH------------HHHHHHHhhhCCCeEEEEccccchH
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAASM 194 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG------------laIyD~Ir~~k~~V~Tvv~G~AASa 194 (246)
++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++.+- ..++..|..++.||.+.+.|.|.++
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 108 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGG 108 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceech
Confidence 667777888877777665433333333211 344554321 2466778888999999999999999
Q ss_pred HHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 195 GAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 195 AslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|..|+++||- |++.++++|.+....-|
T Consensus 109 G~~lal~cD~--~ia~~~a~f~~pe~~~G 135 (249)
T PRK07110 109 GLVLGLYADI--VVLSRESVYTANFMKYG 135 (249)
T ss_pred HHHHHHhCCE--EEEeCCCEecCchhccC
Confidence 9999999999 99999998876554433
No 62
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=96.92 E-value=0.0081 Score=53.61 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=62.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH--------------HHHHHHHHhhhCCCeEEEEccccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLAA 192 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a--------------GlaIyD~Ir~~k~~V~Tvv~G~AA 192 (246)
++.++.+.+.+.|..++.++..+-|.|.= =|.|+++.+ ...++..|..++.||.+.+.|.|.
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~ 109 (251)
T PRK06023 30 ITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAI 109 (251)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCcee
Confidence 56677777777776665433222222210 133344321 124566788889999999999999
Q ss_pred hHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.+|..|+++||- |++.++++|.+-....|
T Consensus 110 GgG~~la~acD~--ria~~~a~f~~pe~~~G 138 (251)
T PRK06023 110 GIGTTIHLHCDL--TFASPRSLFRTPFVDLA 138 (251)
T ss_pred cHHHHHHHhCCE--EEEeCCCEecCcccccC
Confidence 999999999999 99999999987665544
No 63
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=96.92 E-value=0.0097 Score=54.57 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=72.4
Q ss_pred cCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHH-------HHHHHHHHh---hhCCCeEEEEccc
Q 025891 121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGL 190 (246)
Q Consensus 121 ~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~a-------GlaIyD~Ir---~~k~~V~Tvv~G~ 190 (246)
++++...+|.++++-...... +..+-. .-.-||.-.+||||..+.. +..|...+. ..+.|+.+++.|-
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R-~~~lA~-~~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALR-LMKQAE-KFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 445566678888876555543 332322 2257999999999986421 234555544 3467999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|+|++.+..+|. .+|.|++.+.+-.|.+.
T Consensus 147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~ 177 (256)
T PRK12319 147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGF 177 (256)
T ss_pred cCcHHHHHhhcCCE--EEEecCceEEEcCHHHH
Confidence 99999999999998 99999999999888753
No 64
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=96.91 E-value=0.008 Score=53.97 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=63.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS 193 (246)
++.++.+.+.+.|..++.++..+-|.|.= =|.|+++.. ...+++.|..++.||.+.+.|.|.+
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 67777888888887776543333333321 133444432 1235566778889999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+|.-|+++||- |++.++++|.+=...-|
T Consensus 112 gG~~lalacD~--ria~~~a~f~~pe~~~G 139 (261)
T PRK08138 112 GGCELAMHADI--IVAGESASFGQPEIKVG 139 (261)
T ss_pred HHHHHHHhCCE--EEecCCCEeeCcccccc
Confidence 99999999999 99999998876444433
No 65
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=96.89 E-value=0.0073 Score=55.33 Aligned_cols=50 Identities=20% Similarity=0.066 Sum_probs=43.9
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+++.|..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+.....|
T Consensus 105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~G 154 (296)
T PRK08260 105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRG 154 (296)
T ss_pred HHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcC
Confidence 456677888999999999999999999999999 99999999988766544
No 66
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=96.88 E-value=0.008 Score=53.74 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=63.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC-------CCHHH---------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG-------GsV~a---------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++...+.+.+..++.++..+ .|.|-+.| +++.+ ...+++.|..++.||.+.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~--~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVY--AVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcE--EEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 67777777877777666433232 23344444 33321 12356678888999999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|.++|.-|+++||- |++.++++|.+-...-|
T Consensus 106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~G 138 (260)
T PRK05809 106 GFALGGGCELSMACDI--RIASEKAKFGQPEVGLG 138 (260)
T ss_pred CeeecHHHHHHHhCCE--EEeeCCCEEeCcccccC
Confidence 9999999999999999 99999999987555444
No 67
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=96.86 E-value=0.0079 Score=53.91 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=63.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-------CCCHHH---------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-------GGSVTA---------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP-------GGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++...+.+.|..++.++..+- |.|.+- |+++.. ...+++.|..++.||.+.+.
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vrv--vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVYA--LVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN 103 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 677777888877777765433332 333333 344322 12245667788999999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|.++|.-|+++||- |++.++++|.+-...-|
T Consensus 104 G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 136 (258)
T PRK09076 104 GYAMGGGLECALACDI--RIAEEQAQMALPEASVG 136 (258)
T ss_pred CEEecHHHHHHHhCCE--EEecCCCEeeCcccccC
Confidence 9999999999999999 99999999877554434
No 68
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=96.86 E-value=0.018 Score=51.87 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=63.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe------CCCCCHHHH--------------HHHHHHHhhhCCCeEEEEccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTAG--------------MAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN------SPGGsV~aG--------------laIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.++.+.+.+.+..++.++ .+-|.|.=+ |-|+++... ..+++.|..++.||.+.+.|.
T Consensus 28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~ 106 (261)
T PRK11423 28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS 106 (261)
T ss_pred CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence 67777888888887766433 433333211 334444321 235667788899999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.++|.-|+++||- |++.+.++|.+=....|
T Consensus 107 a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 137 (261)
T PRK11423 107 VWGGAFELIMSCDL--IIAASTSTFAMTPANLG 137 (261)
T ss_pred EechHHHHHHhCCE--EEecCCCEecCchhhcC
Confidence 99999999999999 99999999876554433
No 69
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=96.82 E-value=0.01 Score=53.09 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=62.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------H-----HHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------G-----MAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------G-----laIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++.+.+.+.|..++.++ .+-|.|.=+ |.|+++.+ . ..+++.|..++.||.+.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 101 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN 101 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67777888888887776543 443333211 33344321 0 1234567788999999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
|.|.++|..|+++||- |++.+++.|.+-...
T Consensus 102 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~ 132 (256)
T TIGR02280 102 GVAAGAGANLALACDI--VLAAESARFIQAFAK 132 (256)
T ss_pred CeeehHHHHHHHhCCE--EEecCCCEEeChhhh
Confidence 9999999999999999 999999998764444
No 70
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=96.78 E-value=0.012 Score=52.86 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=61.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH---------------HHHHHHHHhhhCCCeEEEEcccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGLA 191 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a---------------GlaIyD~Ir~~k~~V~Tvv~G~A 191 (246)
++.++.+.+.+.|..++ +..+-|.|.=+ |.|+++.+ ...+++.|..++.||.+.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 56667777777776655 22333333211 23444422 12356677788999999999999
Q ss_pred chHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 192 ASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 192 ASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.++|.-|+++||- |++.++++|.+=....|
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 133 (255)
T PRK08150 104 VGGGLELASAAHI--RVADESTYFALPEGQRG 133 (255)
T ss_pred EcHHHHHHHhCCE--EEEeCCCEEeccccccC
Confidence 9999999999999 99999999876544433
No 71
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=96.78 E-value=0.007 Score=59.30 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=64.9
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHH-------HHHHHHHHH---hhhCCCeEEEEccccchHHHHH
Q 025891 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLAASMGAFL 198 (246)
Q Consensus 129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~-------aGlaIyD~I---r~~k~~V~Tvv~G~AASaAslI 198 (246)
|.++++-...... +..+-. .-.-||.-+|||||..+. .+.+|...| -..+.|+.+++.|-+.|+|++.
T Consensus 200 G~~~peGyRKAlR-~mklAe-kf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla 277 (431)
T PLN03230 200 AMPQPNGYRKALR-FMRHAE-KFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA 277 (431)
T ss_pred CCCCHHHHHHHHH-HHHHHH-HcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence 5566655444332 222221 226799999999997642 234565555 4556899999999999999999
Q ss_pred HccCCCCcEEecCCcEEEEEcCCC
Q 025891 199 LSAGTKGKRYSLPNSRIMIHQPLG 222 (246)
Q Consensus 199 l~AGdkgkR~a~pnS~iMIHqP~~ 222 (246)
+..||. .+|.+++.+.+-.|.+
T Consensus 278 lg~aD~--VlMle~A~ysVisPEg 299 (431)
T PLN03230 278 IGCGNR--MLMMENAVYYVASPEA 299 (431)
T ss_pred hhcCCE--EEEecCCEEEecCHHH
Confidence 999998 9999999999888864
No 72
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=96.78 E-value=0.01 Score=53.29 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=44.6
Q ss_pred HHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 171 aIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.+++.|..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+-...-|
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 138 (259)
T TIGR01929 88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVG 138 (259)
T ss_pred HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccc
Confidence 3566788889999999999999999999999999 99999999988666544
No 73
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=96.78 E-value=0.0088 Score=53.49 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=61.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH-------------------HHHHHHHHhhhCCCeEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-------------------GMAIFDTIRHIRPDVSTV 186 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a-------------------GlaIyD~Ir~~k~~V~Tv 186 (246)
++.++.+.+.+.|..++.++..+-|.|.=+ |-|+++.+ ...+++.|..++.||.+.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 106 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAA 106 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 677777888877777665443333333211 22344321 012455677788999999
Q ss_pred EccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 187 v~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
+.|.|.++|.-|+++||- |++.++++|.+=...
T Consensus 107 v~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~ 139 (260)
T PRK05980 107 VNGLAFGGGCEITEAVHL--AIASERALFAKPEIR 139 (260)
T ss_pred EcCEEEhhhhHHhHhCCE--EEecCCCEecCcccc
Confidence 999999999999999999 999999988764433
No 74
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=96.77 E-value=0.0092 Score=54.44 Aligned_cols=91 Identities=10% Similarity=0.065 Sum_probs=63.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE------eCCCCCHHHH-----------------HHHHHHHhhhCCCeEEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL------NSPGGSVTAG-----------------MAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I------NSPGGsV~aG-----------------laIyD~Ir~~k~~V~Tvv 187 (246)
++.++...+.+.|..++.++..+-|.|.= =|.|+++.+- ..+++.|..++.+|.+.+
T Consensus 35 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV 114 (278)
T PLN03214 35 MTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAI 114 (278)
T ss_pred CCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 66777777888777776544333333321 1333443220 114456778889999999
Q ss_pred ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|.|.++|..|+++||. |++.++++|.+-....|
T Consensus 115 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lG 148 (278)
T PLN03214 115 RGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALG 148 (278)
T ss_pred cCcccchHHHHHHhCCE--EEecCCCEecCcHHHhC
Confidence 99999999999999999 99999999887554444
No 75
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=96.76 E-value=0.014 Score=52.25 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=43.0
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
++..|..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+-....|
T Consensus 91 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 140 (262)
T PRK05995 91 MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLG 140 (262)
T ss_pred HHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccc
Confidence 455677888999999999999999999999999 99999999877555444
No 76
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=96.75 E-value=0.0095 Score=53.71 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=43.3
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+++.|..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+....-|
T Consensus 101 ~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G 150 (272)
T PRK06142 101 AINAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLG 150 (272)
T ss_pred HHHHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhC
Confidence 455677889999999999999999999999999 99999999876655544
No 77
>PLN02921 naphthoate synthase
Probab=96.73 E-value=0.013 Score=54.98 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=65.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHHH----------------HHHHHHHhhhCCCeEEEEcc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~aG----------------laIyD~Ir~~k~~V~Tvv~G 189 (246)
++.++.+.|.+.|..++.++..+-|.|.= =|.||++..- ..++..|+.++.||.+.+.|
T Consensus 91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG 170 (327)
T PLN02921 91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG 170 (327)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67788888888887776543332222211 1344554320 12455777889999999999
Q ss_pred ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|.++|..|+++||- |++.+++.|.+..+..|
T Consensus 171 ~a~GGG~~LalacD~--riA~~~A~f~~pe~~~G 202 (327)
T PLN02921 171 YAVGGGHILHMVCDL--TIAADNAVFGQTGPKVG 202 (327)
T ss_pred EEecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence 999999999999999 99999999988777654
No 78
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=96.73 E-value=0.014 Score=52.16 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=59.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHH-------------------HHHHHHHHhhhCCCeEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA-------------------GMAIFDTIRHIRPDVST 185 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~a-------------------GlaIyD~Ir~~k~~V~T 185 (246)
++.++...+.+.|..++.++..+- |.|.+-| +++.+ ...+++.|..++.||.+
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~--vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 103 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVRF--LLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIM 103 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceE--EEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 566777777777766654332222 2234444 33321 12345567788999999
Q ss_pred EEccccchHHHHHHccCCCCcEEecCCcEEEEEc
Q 025891 186 VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQ 219 (246)
Q Consensus 186 vv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHq 219 (246)
.+.|.|.++|..|+++||- |++.++++|.+=.
T Consensus 104 av~G~a~GgG~~lala~D~--ria~~~a~f~~pe 135 (255)
T PRK07260 104 CVDGAVAGAAANMAVAADF--CIASTKTKFIQAF 135 (255)
T ss_pred EecCeeehhhHHHHHhCCE--EEEeCCCEEechH
Confidence 9999999999999999999 9999999987633
No 79
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.72 E-value=0.014 Score=56.78 Aligned_cols=99 Identities=12% Similarity=0.004 Sum_probs=71.0
Q ss_pred cEEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH------------H-------HHHH
Q 025891 123 RIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------M-------AIFD 174 (246)
Q Consensus 123 RIIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG------------l-------aIyD 174 (246)
++|.|+-+ ++.++...+.+.|..++.++..+-|.|.=+ |-||++.+- . .+..
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 132 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY 132 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 57778777 788899999999988876554433333211 345665321 1 1222
Q ss_pred HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|..++.||.+.+.|.|.++|.-|+++||. |++.++++|.+=...-|
T Consensus 133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iG 179 (407)
T PLN02851 133 LQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMG 179 (407)
T ss_pred HHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccC
Confidence 455678999999999999999999999999 99999988877555544
No 80
>PLN02888 enoyl-CoA hydratase
Probab=96.69 E-value=0.015 Score=52.58 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=62.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCCHHHH------------HHHHHHHhhhCCCeEEEEccccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAA 192 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP------GGsV~aG------------laIyD~Ir~~k~~V~Tvv~G~AA 192 (246)
++.++...+.+.|..++.++..+-|.| .+. |+++.+. ..++..|..++.||.+.+.|.|.
T Consensus 34 l~~~~~~~l~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~ 111 (265)
T PLN02888 34 LTRPMMVELAAAFKRLDEDDSVKVIIL--TGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAI 111 (265)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEE--ECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeee
Confidence 677778888888877765443333333 333 3454321 23455677888999999999999
Q ss_pred hHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 193 SMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 193 SaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
++|..|+++||- |++.+++.|.+=...
T Consensus 112 GgG~~lal~cD~--ria~~~a~f~~pe~~ 138 (265)
T PLN02888 112 TAGFEIALACDI--LVASRGAKFIDTHAK 138 (265)
T ss_pred chHHHHHHhCCE--EEecCCCEecCcccc
Confidence 999999999999 999999988764433
No 81
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=96.68 E-value=0.013 Score=52.33 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=62.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH----------------HHHHHHHHhhhCCCeEEEEccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.++.+.+.+.+..++.++..+-|.|.= =|.|+++.+ ...++..|..++.||.+.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~ 104 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGA 104 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 66677777777777666543333333321 133455421 1235667788899999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
|.+.|.-|+++||- |++.++++|.+-...
T Consensus 105 a~GgG~~lalacD~--ria~~~a~f~~pe~~ 133 (257)
T PRK07658 105 ALGGGLELAMSCHI--RFATESAKLGLPELN 133 (257)
T ss_pred eeeHHHHHHHhCCE--EEecCCCcccCcccc
Confidence 99999999999999 999999988765443
No 82
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.68 E-value=0.02 Score=52.03 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=70.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCC----------HHHHHHHHHHHhhh---CCCeEEEEccccchHHHH
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS----------VTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAF 197 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGs----------V~aGlaIyD~Ir~~---k~~V~Tvv~G~AASaAsl 197 (246)
++-+-+......+...-..+..-||...||+||=. ..++-.+.+.+... +.|+.+++.|.+.|.|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 44444444444443321123578999999999954 33333334444444 489999999999998888
Q ss_pred HHcc-CCCCcEEecCCcEEEEEcCCCC---CCCCHHHHHHHHHHHH
Q 025891 198 LLSA-GTKGKRYSLPNSRIMIHQPLGG---AQGGQSDIDLQVHIMA 239 (246)
Q Consensus 198 Il~A-GdkgkR~a~pnS~iMIHqP~~g---~~G~a~Di~i~A~eL~ 239 (246)
.+.- +|. .+|.|++.+..-.|.+. .+-+.++.+..++++.
T Consensus 125 amg~~ad~--v~Alp~A~i~vm~~e~aa~I~~~~~~~~~e~a~~~~ 168 (238)
T TIGR03134 125 AHGLQADR--IIALPGAMVHVMDLESMARVTKRSVEELEALAKSSP 168 (238)
T ss_pred HHccCcCe--EEEcCCcEEEecCHHHHHHHHccCHhHHHHHHHhhh
Confidence 8863 666 99999999988877754 2445566666666543
No 83
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=96.66 E-value=0.017 Score=52.20 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=61.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH-----------------HHHHHHHhhhCCCeEEEEcc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-----------------MAIFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG-----------------laIyD~Ir~~k~~V~Tvv~G 189 (246)
++.++...+.+.|..++.++..+-|.|.= =|.|+++.+. ..++..|..++.||.+.+.|
T Consensus 36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 67777888888887777544333333311 1333443210 12344566778999999999
Q ss_pred ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|.++|..|+++||- |++.++++|.+=....|
T Consensus 116 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 147 (268)
T PRK07327 116 PAVGAGLVAALLADI--SIAAKDARIIDGHTRLG 147 (268)
T ss_pred eeeehhhHHHHhCCE--EEecCCCEEeCcccccC
Confidence 999999999999999 99999999875333333
No 84
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=96.65 E-value=0.012 Score=52.69 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=43.4
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+++.|..++.||.+.+.|.|.+.|.-|+++||- |++.++++|.+-...-|
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 144 (266)
T PRK09245 95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLG 144 (266)
T ss_pred HHHHHHcCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccC
Confidence 456777888999999999999999999999999 99999999887555544
No 85
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=96.65 E-value=0.017 Score=51.59 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=63.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH----------------HHHHHHHhhhCCCeEEEEccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG----------------laIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.++.+.+.+.|..++.++..+-|.|.= =|-|+++.+- ..+++.|..++.||.+.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~ 104 (249)
T PRK07938 25 LPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGF 104 (249)
T ss_pred CCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCE
Confidence 66677777777776665443333222221 1334554321 124556778899999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG 226 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~G 226 (246)
|.++|.-|+++||- |++.++++|.+=...-|..|
T Consensus 105 a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g 138 (249)
T PRK07938 105 CLGGGIGLVGNADV--IVASDDATFGLPEVDRGALG 138 (249)
T ss_pred EeehHHHHHHhCCE--EEEeCCCEeeCccceecCch
Confidence 99999999999999 99999999876544444433
No 86
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=96.64 E-value=0.013 Score=52.28 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=42.5
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.+..|..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+....-|
T Consensus 87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G 136 (249)
T PRK05870 87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAADV--RIAGPKALFDARFQKLG 136 (249)
T ss_pred HHHHHHhCCCCEEEEECCEeEchhHHHHHhCCE--EEEcCCCEEeCcccccC
Confidence 345567788999999999999999999999999 99999999986655433
No 87
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=96.63 E-value=0.02 Score=51.25 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=62.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH-------------------HHHHHHHhhhCCCeEEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG-------------------laIyD~Ir~~k~~V~Tvv 187 (246)
++.++.+.+.+.+..++ ++..+-|.|.= =|.|+++.+- ..++..|..++.||.+.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 106 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV 106 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 56777778888877776 44333333321 1334444220 114556778899999999
Q ss_pred ccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
.|.|.++|..|+++||- |++.++++|.+-...
T Consensus 107 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 138 (262)
T PRK08140 107 NGVAAGAGANLALACDI--VLAARSASFIQAFVK 138 (262)
T ss_pred CCeeehhHHHHHHhCCE--EEecCCCEEeccccc
Confidence 99999999999999999 999999998754443
No 88
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=96.61 E-value=0.016 Score=52.63 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=62.2
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHH-------------------HHHHHHHHhhhCCCeEEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------------GMAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~a-------------------GlaIyD~Ir~~k~~V~Tvv 187 (246)
++.++...+.+.|..++.++..+-|.|.= =|-|+++.+ ...+++.|..++.||.+.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67777788887777776543333333321 123344322 1124556778889999999
Q ss_pred ccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
.|.|.++|.-|+++||- |++.++++|.+=...
T Consensus 112 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~ 143 (275)
T PRK09120 112 NGWCFGGGFSPLVACDL--AIAADEAQFGLSEIN 143 (275)
T ss_pred cCEEechhHHHHHhCCE--EEEeCCcEecCCccc
Confidence 99999999999999999 999999998764433
No 89
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=96.60 E-value=0.019 Score=51.41 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=64.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC-------CCHHH---------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG-------GsV~a---------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++...+.+.+..++.++..+ .|.|.+.| +++.+ ...+++.|..++.||.+.+.
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~--~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVR--VVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeE--EEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 67788888888887776543333 23334434 33321 12345667788899999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|.++|.-|+++||- |++.++++|.+-...-|
T Consensus 106 G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G 138 (260)
T PRK07657 106 GIALGGGLELALACDF--RIAAESASLGLTETTLA 138 (260)
T ss_pred CEeechHHHHHHhCCE--EEeeCCCEEcCchhccC
Confidence 9999999999999999 99999999887655544
No 90
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=96.59 E-value=0.018 Score=52.85 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=40.0
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEE
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIH 218 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIH 218 (246)
++..|..++.||.+.+.|.|.+.|.-|+++||- |++.+++.|.+=
T Consensus 119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~p 163 (302)
T PRK08272 119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYP 163 (302)
T ss_pred HHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCc
Confidence 455677888999999999999999999999999 999999988653
No 91
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=96.58 E-value=0.022 Score=51.50 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=64.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC-------CCCHHH-----------------HHHHHHHHhhhCCCeEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-------GGSVTA-----------------GMAIFDTIRHIRPDVSTV 186 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP-------GGsV~a-----------------GlaIyD~Ir~~k~~V~Tv 186 (246)
++.++.+.+.+.|..++.++..+-|. |.+. |+++.. ...+++.|..++.||.+.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~v~~vV--l~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 112 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDDAIRVVV--LTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIAC 112 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEE--EEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 67777788888777766543333222 3333 344321 012446677888999999
Q ss_pred EccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 187 CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 187 v~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+.|.|.++|.-|+++||- |++.++++|.+.....|
T Consensus 113 v~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~G 147 (269)
T PRK06127 113 IRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLG 147 (269)
T ss_pred ECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhC
Confidence 999999999999999999 99999999988766644
No 92
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=96.55 E-value=0.017 Score=52.14 Aligned_cols=89 Identities=10% Similarity=0.075 Sum_probs=60.6
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++...+.+.|..++.++..+-|.|.=+ |.|+++.. ...++..|..++.||.+.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 666777777777766665433333333111 33444331 01345566778899999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
|.|.++|.-|+++||- |++.++++|.+=...
T Consensus 110 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~ 140 (265)
T PRK05674 110 GAAFGGALGLISCCDM--AIGADDAQFCLSEVR 140 (265)
T ss_pred CEEEechhhHhhhcCE--EEEeCCCEEeCcccc
Confidence 9999999999999999 999999998874433
No 93
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=96.54 E-value=0.021 Score=51.73 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=61.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHH----------------HHHHHHHHhhhCCCeEEEEcc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~G 189 (246)
++.++.+.+.+.|..++.++..+-|.|.= =|.|+++.+ ...+++.|..++.||.+.+.|
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 116 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAG 116 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECC
Confidence 56666677777766665443333233321 123343321 112456778889999999999
Q ss_pred ccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|.++|.-|+++||- |++.++++|.+=.+.-|
T Consensus 117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 148 (273)
T PRK07396 117 YAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVG 148 (273)
T ss_pred EEehHHHHHHHhCCE--EEeeCCcEEeccccccc
Confidence 999999999999999 99999999887555544
No 94
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=96.52 E-value=0.017 Score=53.01 Aligned_cols=52 Identities=10% Similarity=-0.047 Sum_probs=43.1
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQ 225 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~ 225 (246)
++..|+.++.||.+.+.|.|.+.|.-|+++||- |++.++++|.+=....|..
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~ 161 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIP 161 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcC
Confidence 345677889999999999999999999999999 9999999987644444443
No 95
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=96.51 E-value=0.017 Score=52.04 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=59.0
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH----------------HHHHHHHHhhhCCCeEEEEcc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~G 189 (246)
++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++.+ ...+++.|..++.||.+.+.|
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 111 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG 111 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 466667777777766654332333322211 22344321 122455677888999999999
Q ss_pred ccchHHHHHHccCCCCcEEecCCcEEEEEc
Q 025891 190 LAASMGAFLLSAGTKGKRYSLPNSRIMIHQ 219 (246)
Q Consensus 190 ~AASaAslIl~AGdkgkR~a~pnS~iMIHq 219 (246)
.|.++|.-|+++||- |++.++++|.+=.
T Consensus 112 ~a~GgG~~lala~D~--~ia~~~a~f~~pe 139 (262)
T PRK06144 112 ACVGGGAAIAAACDL--RIATPSARFGFPI 139 (262)
T ss_pred eeeehHHHHHHhCCE--EEecCCCEeechh
Confidence 999999999999999 9999999987643
No 96
>PRK08321 naphthoate synthase; Validated
Probab=96.50 E-value=0.024 Score=52.35 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=63.1
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEE-----------EeCCCCCHHH-----------------------HH---HHH
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY-----------LNSPGGSVTA-----------------------GM---AIF 173 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~-----------INSPGGsV~a-----------------------Gl---aIy 173 (246)
++.++...+.+.|..++.++..+-|.|. .=|.||++.. .. .++
T Consensus 49 l~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (302)
T PRK08321 49 FRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQ 128 (302)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhhhHHHHHHHHHHH
Confidence 6777777787777777654434444442 2255666432 01 234
Q ss_pred HHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEec-CCcEEEEEcCC
Q 025891 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSL-PNSRIMIHQPL 221 (246)
Q Consensus 174 D~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~-pnS~iMIHqP~ 221 (246)
+.|..++.||.+.+.|.|.++|.-|+++||- |++. ++++|.+=...
T Consensus 129 ~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~ 175 (302)
T PRK08321 129 RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDAD 175 (302)
T ss_pred HHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccc
Confidence 5677788999999999999999999999999 9998 68998764444
No 97
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=96.50 E-value=0.027 Score=50.49 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=61.8
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHHHH----------HH--HHHHhhhCCCeEEEEccccch
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAGM----------AI--FDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~aGl----------aI--yD~Ir~~k~~V~Tvv~G~AAS 193 (246)
++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++.+.. .+ +..+..++.||.+.+.|.|.+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 667777888888777765443333333221 2245543211 11 122345678999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|.-|+++||- |++.++++|.+-...-|
T Consensus 108 gG~~lalacD~--ria~~~a~f~~pe~~~G 135 (259)
T PRK06494 108 GGFELALACDL--IVAAENATFALPEPRVG 135 (259)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence 99999999999 99999999988665544
No 98
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=96.49 E-value=0.024 Score=50.68 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=60.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH-------------HHHHHHHHhhhCCCeEEEEccccch
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a-------------GlaIyD~Ir~~k~~V~Tvv~G~AAS 193 (246)
++.++.+.+.+.|..++.++..+-|.|.=+ |-|+++.+ ...++..|..++.||.+.+.|.|.+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~G 107 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALG 107 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeH
Confidence 566777777777766665433333333211 22343321 1234567788899999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
+|.-|+++||. |++.++++|.+=...
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~ 133 (257)
T PRK05862 108 GGCELAMMCDI--IIAADTAKFGQPEIK 133 (257)
T ss_pred HHHHHHHHCCE--EEEeCCCEEeCchhc
Confidence 99999999999 999999988764443
No 99
>PRK08139 enoyl-CoA hydratase; Validated
Probab=96.49 E-value=0.028 Score=50.76 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=62.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCC------CCCHHH----------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTA----------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSP------GGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++.+.+.+.|..++.++..+-| .|.+. |+++.+ ...+++.|..++.||.+.+.
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 112 (266)
T PRK08139 35 LSEAMLAALQAALDAIAADPSVRVV--VLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVH 112 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEE--EEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5677777777777766643322222 22333 344321 01245567788999999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA 224 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~ 224 (246)
|.|.+.|.-|+++||- |++.++++|.+-....|.
T Consensus 113 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl 146 (266)
T PRK08139 113 GIATAAGCQLVASCDL--AVAADTARFAVPGVNIGL 146 (266)
T ss_pred ceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCC
Confidence 9999999999999999 999999998776555443
No 100
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=96.48 E-value=0.0035 Score=52.24 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=32.4
Q ss_pred HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEc
Q 025891 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQ 219 (246)
Q Consensus 176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHq 219 (246)
.+..+.||++++.|+|+|++.+|+++|++ +++.|.+.++..-
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiG 43 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIG 43 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeC
Confidence 35677899999999999999999999999 9999999988543
No 101
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=96.45 E-value=0.023 Score=54.63 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=68.2
Q ss_pred EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH-------------------HHHHH
Q 025891 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------------AIFDT 175 (246)
Q Consensus 124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl-------------------aIyD~ 175 (246)
+|.|+-+ ++.++...+.+.|..++.++..+-|.|.=+ |-||++.+-. .+...
T Consensus 21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~ 100 (381)
T PLN02988 21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYV 100 (381)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 4556655 677888889999888765443333333211 3356654311 12235
Q ss_pred HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|..++.||.+.+.|.|.++|.-|+++||. |++.++++|.+=...-|
T Consensus 101 i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iG 146 (381)
T PLN02988 101 MATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALG 146 (381)
T ss_pred HHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcC
Confidence 67788999999999999999999999999 99999998875444433
No 102
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=96.41 E-value=0.02 Score=53.98 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=41.5
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
++..|..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+=...
T Consensus 92 ~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~ 139 (342)
T PRK05617 92 LNALIARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETG 139 (342)
T ss_pred HHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccc
Confidence 445677888999999999999999999999999 999999998765443
No 103
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=96.40 E-value=0.027 Score=50.27 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=41.4
Q ss_pred HHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 175 ~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|+.++.||.+.+.|.|.+.|..|+++||- |++.++++|.+....-|
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G 133 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRG 133 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcC
Confidence 467788999999999999999999999999 99999999987665544
No 104
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=96.37 E-value=0.048 Score=48.67 Aligned_cols=91 Identities=10% Similarity=0.064 Sum_probs=59.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH-----------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a-----------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++.+.|.+.+..++.++....+.|.=. |.|+++.. ...+++.|..++.||.+.+.
T Consensus 23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~ 102 (239)
T PLN02267 23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT 102 (239)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 677777777777776664332222333212 23444321 11245557778899999999
Q ss_pred cccchHHHHHHccCCCCcEEecC-CcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLP-NSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~p-nS~iMIHqP~~g 223 (246)
|.|.++|..|+++||- |++.+ .++|.+-.-..|
T Consensus 103 G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~G 136 (239)
T PLN02267 103 GHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIG 136 (239)
T ss_pred CcchHHHHHHHHHCCE--EEecCCCCeEeccccccC
Confidence 9999999999999999 99985 567765444433
No 105
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=96.35 E-value=0.016 Score=53.36 Aligned_cols=48 Identities=10% Similarity=-0.065 Sum_probs=42.6
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
.+..|..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+-...
T Consensus 104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~ 151 (298)
T PRK12478 104 KFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSR 151 (298)
T ss_pred HHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccc
Confidence 345677889999999999999999999999999 999999999876655
No 106
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=96.32 E-value=0.028 Score=50.31 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=41.0
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
+++.|..++.||.+.+.|.|.++|.-|+++||- |++.+.++|.+=...
T Consensus 93 ~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 140 (260)
T PRK07827 93 LLRAIVELPKPVIAAIDGHVRAGGFGLVGACDI--VVAGPESTFALTEAR 140 (260)
T ss_pred HHHHHHhCCCCEEEEEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccc
Confidence 455667778999999999999999999999999 999999988764433
No 107
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.31 E-value=0.03 Score=53.87 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=63.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCCCHHH------------------HHHHHHHHhhhCCCeEEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA------------------GMAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-----NSPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv 187 (246)
++.++...+.+.+..++.++..+-|.|.= =|-|+++.+ ...+++.|..++.||.+.+
T Consensus 52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV 131 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV 131 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67778888888887776543232222211 122333321 1235567888899999999
Q ss_pred ccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 188 ~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|.|.++|.-|+++||. |++.++++|.+-...-|
T Consensus 132 nG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlG 165 (360)
T TIGR03200 132 NGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHG 165 (360)
T ss_pred CCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccC
Confidence 99999999999999999 99999999987655544
No 108
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.29 E-value=0.033 Score=54.02 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=68.2
Q ss_pred EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH-------------------HHHHHH
Q 025891 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDT 175 (246)
Q Consensus 124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG-------------------laIyD~ 175 (246)
+|.|+-| ++.++...+.+.|..++.++..+-|.|.= =|-||++.+- ..+...
T Consensus 49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (401)
T PLN02157 49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYL 128 (401)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence 4555555 67788888888887776544333333321 1446665421 012234
Q ss_pred HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|..++.||.+.+.|.|.++|.-|+++||. |++.++++|.+=...-|
T Consensus 129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iG 174 (401)
T PLN02157 129 LGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIG 174 (401)
T ss_pred HHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcC
Confidence 77889999999999999999999999999 99999998876555444
No 109
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=96.24 E-value=0.049 Score=47.90 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=59.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHH--------------HHHHHHHHHhhhCCCeEEEEccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVT--------------AGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~--------------aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.++.+.+.+.|..++ +.. .+ |.|...| +++. ....++..|..++.||.+.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~--~~~-~v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE--DDR-AV-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh--ccC-cE-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 66777777777776655 212 23 3333333 3322 12334556777889999999999
Q ss_pred cchHHHHHHccCCCCcEEecCC-cEEEEEcCCCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPN-SRIMIHQPLGG 223 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pn-S~iMIHqP~~g 223 (246)
|.+.|..|+++||- |++.++ ++|.+-....|
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~G 133 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIG 133 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhC
Confidence 99999999999999 999999 88876444433
No 110
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=96.21 E-value=0.039 Score=49.49 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=60.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHHH----------------HHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTAG----------------MAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~aG----------------laIyD~Ir~~k~~V~Tvv~ 188 (246)
+|.++.+.+.+.|..++ ++..+ .|.|.+.| +++.+- ..++..|..++.||.+.+.
T Consensus 30 l~~~~~~~l~~~l~~~~-d~~vr--vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~ 106 (260)
T PRK07659 30 LDEPMLKELLQALKEVA-ESSAH--IVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIH 106 (260)
T ss_pred CCHHHHHHHHHHHHHhc-CCCee--EEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 66677777777776663 22222 23333333 444321 1234456677889999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|.++|.-|+++||- |++.++++|.+....-|
T Consensus 107 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 139 (260)
T PRK07659 107 GPAAGLGLSIALTADY--VIADISAKLAMNFIGIG 139 (260)
T ss_pred CceecHHHHHHHhCCE--EEEcCCCEEcCchhhcC
Confidence 9999999999999999 99999999887665544
No 111
>PRK08788 enoyl-CoA hydratase; Validated
Probab=96.20 E-value=0.025 Score=52.23 Aligned_cols=44 Identities=9% Similarity=-0.124 Sum_probs=37.3
Q ss_pred hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 178 ~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.++.||.+.+.|.|.++|.-|+++||- |++.++++|.+=...-|
T Consensus 119 ~~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lG 162 (287)
T PRK08788 119 GAGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFN 162 (287)
T ss_pred CCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhC
Confidence 467889999999999999999999999 99999998876443333
No 112
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=96.18 E-value=0.022 Score=50.80 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=67.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHH----------------HHHHHHHhhhCCCeEEEEccc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aG----------------laIyD~Ir~~k~~V~Tvv~G~ 190 (246)
++.++...+.+.|..++.++..+-|.|.= =|-|+++..- ..+...|+.++.||.+.+.|.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 108 (257)
T COG1024 29 LNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGY 108 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcce
Confidence 67788888888888777653333222221 1334555431 125678888899999999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|..+|.-|+++||- |++.++++|.+....-|
T Consensus 109 a~GgG~eLal~~D~--ria~~~a~f~~pe~~iG 139 (257)
T COG1024 109 ALGGGLELALACDI--RIAAEDAKFGLPEVNLG 139 (257)
T ss_pred EeechhhhhhcCCe--EEecCCcEecCcccccc
Confidence 99999999999999 99999999998877754
No 113
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=96.16 E-value=0.039 Score=49.49 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=43.8
Q ss_pred HHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCC
Q 025891 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGA 224 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~ 224 (246)
++..|..++.||.+.|.|.|.+.|..|+++||- |++.++++|.+....-|.
T Consensus 88 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl 138 (255)
T PRK07112 88 LWHRLATGPYVTIAHVRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFGL 138 (255)
T ss_pred HHHHHHcCCCCEEEEEecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhcc
Confidence 455677788999999999999999999999999 999999999886655443
No 114
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=96.13 E-value=0.053 Score=48.51 Aligned_cols=91 Identities=20% Similarity=0.047 Sum_probs=60.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEE----EeCCCCCHHHHH----------HHHHHH-hhhCCCeEEEEccccchHH
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM----------AIFDTI-RHIRPDVSTVCVGLAASMG 195 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~----INSPGGsV~aGl----------aIyD~I-r~~k~~V~Tvv~G~AASaA 195 (246)
++.++.+.+.+.|..++.++..+-|.|. .=|.|+++.+-. .+...+ ..++.||.+.+.|.|.++|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG 106 (254)
T PRK08252 27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence 6777888888888777654433333331 113445543210 111111 3567899999999999999
Q ss_pred HHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 196 AFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 196 slIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.-|+++||- |++.++++|.+=...-|
T Consensus 107 ~~lalacD~--~ia~~~a~f~~pe~~~G 132 (254)
T PRK08252 107 FELALACDL--IVAARDAKFGLPEVKRG 132 (254)
T ss_pred HHHHHhCCE--EEEeCCCEEeCchhhcC
Confidence 999999999 99999999876444333
No 115
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=96.07 E-value=0.038 Score=52.88 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=67.5
Q ss_pred EEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC------CCCCHHHH----------H-------HHHHH
Q 025891 124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTAG----------M-------AIFDT 175 (246)
Q Consensus 124 IIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS------PGGsV~aG----------l-------aIyD~ 175 (246)
+|.|+-+ ++.++...+.+.|..++.++..+-| .|.+ -||++.+- . .+...
T Consensus 23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvv--Vl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (379)
T PLN02874 23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELI--IIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYH 100 (379)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEE--EEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 4566665 7778888888888877754333322 2333 34554321 0 11234
Q ss_pred HhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 176 Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|..++.||.+.+.|.|.++|.-|+++||- |++.++++|.+=....|
T Consensus 101 i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iG 146 (379)
T PLN02874 101 IHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVG 146 (379)
T ss_pred HHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccC
Confidence 66778999999999999999999999999 99999999887555544
No 116
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=95.82 E-value=0.08 Score=47.50 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=60.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHHH----------------HH--HHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM----------------AI--FDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aGl----------------aI--yD~Ir~~k~~V~Tvv~ 188 (246)
++.++.+.+.+.|..++.++..+-|.|.=+ |.|+++.+-. .+ +..+..++.||.+.+.
T Consensus 29 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~ 108 (263)
T PRK07799 29 LSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAAVE 108 (263)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEEEC
Confidence 667777888887777765443332322111 2234443210 01 1123567889999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|.++|.-|+++||- |++.++++|.+-...-|
T Consensus 109 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 141 (263)
T PRK07799 109 GPAIAGGTEILQGTDI--RVAGESAKFGISEAKWS 141 (263)
T ss_pred CeEeccHHHHHHhCCE--EEecCCCEecCcccccC
Confidence 9999999999999999 99999999877555544
No 117
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=95.80 E-value=0.081 Score=47.46 Aligned_cols=88 Identities=15% Similarity=0.074 Sum_probs=58.3
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE----eCCCCCHHHHH-------H------HHHHHhhhCCCeEEEEccccch
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAGM-------A------IFDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I----NSPGGsV~aGl-------a------IyD~Ir~~k~~V~Tvv~G~AAS 193 (246)
++.++...+.+.|..++.++..+-|.|.= =|.|+++.+-. . ....+..++.||.+.+.|.|.+
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 106 (254)
T PRK08259 27 VDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVA 106 (254)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEh
Confidence 66777788888877776544333233321 13445543210 0 0111235678999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcC
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQP 220 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP 220 (246)
+|.-|+++||- |++.++++|.+-..
T Consensus 107 gG~~lalacD~--~ia~~~a~f~~pe~ 131 (254)
T PRK08259 107 GGLELALWCDL--RVAEEDAVFGVFCR 131 (254)
T ss_pred HHHHHHHhCCE--EEecCCCEecCccc
Confidence 99999999999 99999998876443
No 118
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.62 E-value=0.084 Score=54.50 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=64.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++...+.+.|..++.++..+-|.|.=+ |-|+++.+ +..+++.|..++.||.+.+.
T Consensus 31 l~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~ 110 (714)
T TIGR02437 31 FDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAIN 110 (714)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 567777888888777765443333333211 22344321 23466778888999999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|.+.|.-|+++||. |++.++++|.+=...-|
T Consensus 111 G~alGGGleLalacD~--ria~~~a~fglPEv~lG 143 (714)
T TIGR02437 111 GIALGGGCECVLATDF--RIADDTAKIGLPETKLG 143 (714)
T ss_pred CeeecHHHHHHHhCCE--EEEeCCCEEecchhhcC
Confidence 9999999999999999 99999999987554433
No 119
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=95.47 E-value=0.12 Score=48.06 Aligned_cols=93 Identities=18% Similarity=0.149 Sum_probs=67.9
Q ss_pred EeccccChhHHHHHHHHHHhhhhc----CCCCCeEEEEeCCCCCHHHHH-------HHHHHHhhhC--CCeEEEEccc--
Q 025891 126 RCGGPVEDDMANIIVAQLLYLDAV----DPNKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL-- 190 (246)
Q Consensus 126 fL~G~Idd~~A~~iiaqLl~L~~~----d~~k~I~L~INSPGGsV~aGl-------aIyD~Ir~~k--~~V~Tvv~G~-- 190 (246)
|.+|.+.+...+.+...+. +..+ ...-++.+.+.|.|+-+.++. .|+..+...+ .|+.+++.|-
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~g 148 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALR-LAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVG 148 (274)
T ss_pred ccCcCCCHHHHHHHHHHHH-HHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 4567777766666655443 2222 112489999999999987755 2444444444 6899999999
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
|++.++++.+.||. .+|.+++++.+--|.
T Consensus 149 c~GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 149 CFGGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred cchHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 88999999999999 999999999987773
No 120
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.34 E-value=0.057 Score=50.55 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=69.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHHH-------------HHHHHHHhhhCCCeEEEEccccch
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------MAIFDTIRHIRPDVSTVCVGLAAS 193 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~aG-------------laIyD~Ir~~k~~V~Tvv~G~AAS 193 (246)
++..+..++.+++..++.++..+-|+|+=- +-|.+..+. +.-++.+.+++.||.+.+.|.|..
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Alg 140 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALG 140 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeec
Confidence 677788889999988888776655555411 223333222 224667777889999999999999
Q ss_pred HHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 194 MGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
.|.-|++.||- |+|.++|.|+.-++..|
T Consensus 141 GG~ELalmCDi--rva~~~Akfg~~~~~~G 168 (290)
T KOG1680|consen 141 GGLELALMCDI--RVAGEGAKFGFFEIRMG 168 (290)
T ss_pred cchhhhhhcce--EeccCCCeecccccccC
Confidence 99999999999 99999999999888765
No 121
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=95.30 E-value=0.097 Score=52.78 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=57.5
Q ss_pred cChhHHHHHHHHHHhhh-hcCCCCCeEEEEe-----CCCCCHHHH-------------------HHHHHHHhhhCCCeEE
Q 025891 131 VEDDMANIIVAQLLYLD-AVDPNKDIIMYLN-----SPGGSVTAG-------------------MAIFDTIRHIRPDVST 185 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~-~~d~~k~I~L~IN-----SPGGsV~aG-------------------laIyD~Ir~~k~~V~T 185 (246)
++.++.+.+.+.|..++ .++..+-|.|.-. |.|+++.+. ..+.+.|+.++.||.+
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 56667777777777666 3222233333221 445554321 1244566788999999
Q ss_pred EEccccchHHHHHHccCCCCcEEecCC--cEEEE
Q 025891 186 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMI 217 (246)
Q Consensus 186 vv~G~AASaAslIl~AGdkgkR~a~pn--S~iMI 217 (246)
.+.|.|.++|.-|+++||- |++.++ ++|.+
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~ 156 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSL 156 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence 9999999999999999999 999986 56554
No 122
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.30 E-value=0.13 Score=51.32 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=69.0
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC----------CHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 197 (246)
Q Consensus 128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG----------sV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl 197 (246)
+|.++.+.++.+..-+..-+. -.-||...+||||= -+..+..+++.+.....|..+++.|.++++|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 466777777766544432222 36799999999995 355666677777777889999999999998777
Q ss_pred HHcc----CCCCcEEecCCcEEEEEcCCC
Q 025891 198 LLSA----GTKGKRYSLPNSRIMIHQPLG 222 (246)
Q Consensus 198 Il~A----GdkgkR~a~pnS~iMIHqP~~ 222 (246)
.+++ +|. .++.|++++.+-.|.+
T Consensus 406 am~~~~~~~d~--~~a~p~a~~~v~~pe~ 432 (512)
T TIGR01117 406 AMCSKHLGADQ--VYAWPTAEIAVMGPAG 432 (512)
T ss_pred HhccccCCCCE--EEEcCCCeEeecCHHH
Confidence 7654 555 8999999999988875
No 123
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.29 E-value=0.12 Score=53.20 Aligned_cols=90 Identities=14% Similarity=0.215 Sum_probs=62.5
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe------CCCCCHHH----------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN------SPGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++...+.+.|..++.++..+-|.| +. |-|+++.+ ...++..|..++.||.+.+.
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl-~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVn 104 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVL-VSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIH 104 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 677777788887777765432222222 22 33445432 12356678888999999999
Q ss_pred cccchHHHHHHccCCCCcEEecCC--cEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPN--SRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pn--S~iMIHqP~~g 223 (246)
|.|.++|.-|+++||. |++.++ ++|.+-...-|
T Consensus 105 G~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lG 139 (699)
T TIGR02440 105 GACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLG 139 (699)
T ss_pred CEeecHHHHHHHhCCE--EEEcCCCCcEEechhhccc
Confidence 9999999999999999 999987 56665554433
No 124
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=95.24 E-value=0.085 Score=53.16 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=57.7
Q ss_pred cChhHHHHHHHHHHhhh-hcCCCCCeEEEEe-----CCCCCHHHH-------------------HHHHHHHhhhCCCeEE
Q 025891 131 VEDDMANIIVAQLLYLD-AVDPNKDIIMYLN-----SPGGSVTAG-------------------MAIFDTIRHIRPDVST 185 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~-~~d~~k~I~L~IN-----SPGGsV~aG-------------------laIyD~Ir~~k~~V~T 185 (246)
++.++...+.+.|..++ .++..+-|.|.=+ |.|+++..- ..+.+.|+.++.||.+
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 56667777777777666 3332333333221 344543321 0144567778999999
Q ss_pred EEccccchHHHHHHccCCCCcEEecCC--cEEEE
Q 025891 186 VCVGLAASMGAFLLSAGTKGKRYSLPN--SRIMI 217 (246)
Q Consensus 186 vv~G~AASaAslIl~AGdkgkR~a~pn--S~iMI 217 (246)
.+.|.|.++|..|+++||. |++.++ ++|.+
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~ 160 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSL 160 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEc
Confidence 9999999999999999999 999987 66655
No 125
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.00 E-value=0.11 Score=53.45 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=61.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe----CCCCCHHH------------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN----SPGGsV~a------------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++.+.+.+.+..++.++..+-|.|.=+ |-|+++.+ ...+++.|..++.||.+.+.
T Consensus 31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~ 110 (715)
T PRK11730 31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN 110 (715)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 566677777777766654332222222111 23344422 12245667788899999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
|.|.++|.-|+++||- |++.++++|.+=...-|
T Consensus 111 G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lG 143 (715)
T PRK11730 111 GYALGGGCECVLATDY--RVASPDARIGLPETKLG 143 (715)
T ss_pred CEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcC
Confidence 9999999999999999 99999999887554444
No 126
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=94.94 E-value=0.16 Score=47.77 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=68.8
Q ss_pred EeccccChhHHHHHHHHHHhhhhcCC----CCCeEEEEeCCCCCHHHHH-------HHHHHHhhhC--CCeEEEEccc--
Q 025891 126 RCGGPVEDDMANIIVAQLLYLDAVDP----NKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL-- 190 (246)
Q Consensus 126 fL~G~Idd~~A~~iiaqLl~L~~~d~----~k~I~L~INSPGGsV~aGl-------aIyD~Ir~~k--~~V~Tvv~G~-- 190 (246)
|++|.+.+...+.+...+. +..+.. .-++.+.+.|.|+-..++. .|+..+...+ .|+.+++.|-
T Consensus 79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g 157 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG 157 (301)
T ss_pred ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 4577788777777765443 332222 2689999999999876544 3444444444 6899999998
Q ss_pred cchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 191 AASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 191 AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
|++.++++++.||. .+|.+++++.+--|.
T Consensus 158 c~GG~a~~a~l~D~--iIm~~~a~iglaGP~ 186 (301)
T PRK07189 158 CFGGMGIAAALCSY--LIVSEEGRLGLSGPE 186 (301)
T ss_pred CcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence 99999999999999 999999999987763
No 127
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=94.92 E-value=0.062 Score=53.08 Aligned_cols=93 Identities=22% Similarity=0.316 Sum_probs=67.0
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 198 (246)
Q Consensus 129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI 198 (246)
|.++.+.+.....-+...+.. .=||...+|+|| |.+..+-.+.+++...+.|+.|++.|.+.++|.+.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 567777766665444434442 459999999999 66788899999999999999999999999998888
Q ss_pred HccCCCC--cEEecCCcEEEEEcCCCC
Q 025891 199 LSAGTKG--KRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 199 l~AGdkg--kR~a~pnS~iMIHqP~~g 223 (246)
+++...+ ..++.|++++.+-.|.+.
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e~a 412 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPEGA 412 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred hcccccchhhhhhhhcceeeecChhhh
Confidence 8876221 288999999998777653
No 128
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.82 E-value=0.24 Score=51.00 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=61.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeC-------CCCCHHH----------------HHHHHHHHhhhCCCeEEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-------PGGSVTA----------------GMAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS-------PGGsV~a----------------GlaIyD~Ir~~k~~V~Tvv 187 (246)
++.++.+.+.+.|..++.++..+-| .|-+ -|+++.+ ...+++.|..++.||.+.+
T Consensus 31 l~~~~~~~L~~~l~~~~~d~~vr~v--Vl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV 108 (708)
T PRK11154 31 LKAEFAEQVRAILKQLREDKELKGV--VFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAI 108 (708)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEE--EEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5677777787777777653322222 2323 3344321 1235678888899999999
Q ss_pred ccccchHHHHHHccCCCCcEEecCCc--EEEEEcCCCC
Q 025891 188 VGLAASMGAFLLSAGTKGKRYSLPNS--RIMIHQPLGG 223 (246)
Q Consensus 188 ~G~AASaAslIl~AGdkgkR~a~pnS--~iMIHqP~~g 223 (246)
.|.|.++|.-|+++||- |++.+++ +|.+....-|
T Consensus 109 ~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lG 144 (708)
T PRK11154 109 HGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLG 144 (708)
T ss_pred CCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCC
Confidence 99999999999999999 9999975 6666554433
No 129
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=93.95 E-value=0.12 Score=48.82 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=67.1
Q ss_pred CCCeEEEEeCCCCCH-------HHHHHHHHHHh---hhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 152 NKDIIMYLNSPGGSV-------TAGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 152 ~k~I~L~INSPGGsV-------~aGlaIyD~Ir---~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
.-||..+|++||-.. -.+.+|...|. .++.||.++|.|.-.|.|++-+.-||+ .+|++||++-+-.|.
T Consensus 150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPE 227 (317)
T COG0825 150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPE 227 (317)
T ss_pred CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChh
Confidence 679999999999653 34566755444 457899999999999999999999999 789999999999998
Q ss_pred CCC---CCC-------HHHHHHHHHHHHHH
Q 025891 222 GGA---QGG-------QSDIDLQVHIMAYF 241 (246)
Q Consensus 222 ~g~---~G~-------a~Di~i~A~eL~k~ 241 (246)
+-+ +-+ ++.|+++|..|.++
T Consensus 228 G~AsILWkD~~ka~eAAe~mkita~dLk~l 257 (317)
T COG0825 228 GCASILWKDASKAKEAAEAMKITAHDLKEL 257 (317)
T ss_pred hhhhhhhcChhhhHHHHHHcCCCHHHHHhC
Confidence 642 332 34455555555543
No 130
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.88 E-value=0.3 Score=50.72 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=60.7
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC------CCHHH----------------HHHHHHHHhhhCCCeEEEEc
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA----------------GMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG------GsV~a----------------GlaIyD~Ir~~k~~V~Tvv~ 188 (246)
++.++...+.+.|..++.++..+. .|.+...| +++.+ ...+++.|..++.||.+.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~-vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKS-AVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEE-EEEEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 556677777777776664332221 23334333 44321 23467778888999999999
Q ss_pred cccchHHHHHHccCCCCcEEecCCc--EEEEEcCC
Q 025891 189 GLAASMGAFLLSAGTKGKRYSLPNS--RIMIHQPL 221 (246)
Q Consensus 189 G~AASaAslIl~AGdkgkR~a~pnS--~iMIHqP~ 221 (246)
|.|.++|.-|+++||. |++.+++ +|.+....
T Consensus 117 G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~ 149 (737)
T TIGR02441 117 GSCLGGGLELALACHY--RIATKDRKTLLGLPEVM 149 (737)
T ss_pred CEeecHHHHHHHhCCE--EEEcCCCCCeEecchhh
Confidence 9999999999999999 9999984 66655443
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=93.36 E-value=0.66 Score=43.42 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=65.1
Q ss_pred eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHH-------HHHHh---hhCCCeEEEEccccchHHH
Q 025891 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI-------FDTIR---HIRPDVSTVCVGLAASMGA 196 (246)
Q Consensus 127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaI-------yD~Ir---~~k~~V~Tvv~G~AASaAs 196 (246)
++|.++...++.+...+..-.. . .-|+.+...|+|....+|... ...+. ....|..+++.|-+++.++
T Consensus 133 ~gGS~g~~~~eKi~r~~e~A~~-~-~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a 210 (292)
T PRK05654 133 MGGSMGSVVGEKIVRAVERAIE-E-KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 210 (292)
T ss_pred ccCCccHHHHHHHHHHHHHHHH-c-CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence 4667777778877655543322 2 568999999999988777632 22332 2347889999999988877
Q ss_pred HHHcc-CCCCcEEecCCcEEEEEcCC
Q 025891 197 FLLSA-GTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 197 lIl~A-GdkgkR~a~pnS~iMIHqP~ 221 (246)
..+.. +|- ++|.|++.+.+--|.
T Consensus 211 as~a~~~D~--iia~p~A~ig~aGpr 234 (292)
T PRK05654 211 ASFAMLGDI--IIAEPKALIGFAGPR 234 (292)
T ss_pred HHHHHcCCE--EEEecCcEEEecCHH
Confidence 76554 777 899999999987664
No 132
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=93.15 E-value=0.59 Score=43.65 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=65.3
Q ss_pred eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHH-------HHh---hhCCCeEEEEccccchHHH
Q 025891 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFD-------TIR---HIRPDVSTVCVGLAASMGA 196 (246)
Q Consensus 127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD-------~Ir---~~k~~V~Tvv~G~AASaAs 196 (246)
++|.++....+.+...+..-.. ..-|+.+.++|+|.-..+|..... .+. ....|..+++.|-+++.++
T Consensus 132 ~gGSmg~~~geKi~r~~e~A~~--~~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a 209 (285)
T TIGR00515 132 MGGSMGSVVGEKFVRAIEKALE--DNCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS 209 (285)
T ss_pred cCCCccHHHHHHHHHHHHHHHH--cCCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 3566777777777655543322 256999999999988877763332 222 2347899999999988877
Q ss_pred HHHc-cCCCCcEEecCCcEEEEEcCC
Q 025891 197 FLLS-AGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 197 lIl~-AGdkgkR~a~pnS~iMIHqP~ 221 (246)
..++ .+|- ++|.|++.+.+--|.
T Consensus 210 as~a~~~D~--iia~p~A~ig~aGpr 233 (285)
T TIGR00515 210 ASFAMLGDL--NIAEPKALIGFAGPR 233 (285)
T ss_pred HHHHhCCCE--EEEECCeEEEcCCHH
Confidence 7764 7887 899999999987663
No 133
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=91.46 E-value=1.9 Score=43.89 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=65.4
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC----------CHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 198 (246)
Q Consensus 129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG----------sV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI 198 (246)
|.++.+.++... ++..|-.. -.=||...+|+||- .+..+..+..++.....|+.|++.|.|+++|++.
T Consensus 380 g~l~~~~a~Kaa-rfi~lc~~-~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGA-HFIELCAQ-RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHH-HHHHHHHh-cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 447766655553 33333222 25699999999994 4455566777777888999999999999999999
Q ss_pred HccC--CCCcEEecCCcEEEEEcCCC
Q 025891 199 LSAG--TKGKRYSLPNSRIMIHQPLG 222 (246)
Q Consensus 199 l~AG--dkgkR~a~pnS~iMIHqP~~ 222 (246)
+++. .....++.|++.+.+-.|.+
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~ 483 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQ 483 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHH
Confidence 8843 22237889999998877654
No 134
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=91.02 E-value=3.1 Score=42.17 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=64.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC--------CHH-----------HH----HHHHHHHhhhCCCeEEEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG--------SVT-----------AG----MAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG--------sV~-----------aG----laIyD~Ir~~k~~V~Tvv 187 (246)
++.++...+.+.+..++.+| .+|.+.|=+-+| ++. +. ..+++.|..++.||.+.+
T Consensus 295 l~~~~~~~L~~a~~~~~~~d--~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav 372 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNE--LDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI 372 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCC--CCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 56677777877877776432 345544433333 321 11 125667888899999999
Q ss_pred -ccccchHH-HHHHccCCCCcEEe-------cCCcEEEEEcCCCCC
Q 025891 188 -VGLAASMG-AFLLSAGTKGKRYS-------LPNSRIMIHQPLGGA 224 (246)
Q Consensus 188 -~G~AASaA-slIl~AGdkgkR~a-------~pnS~iMIHqP~~g~ 224 (246)
.|.|..+| .-|+++||- |++ .++++|.+-...-|.
T Consensus 373 ~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl 416 (546)
T TIGR03222 373 EPGSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGL 416 (546)
T ss_pred CCCeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCcccccc
Confidence 79999999 999999999 999 899999877766553
No 135
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=90.36 E-value=2.6 Score=38.61 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=48.9
Q ss_pred hcCCCCCeEEEEeCCC---CCHHHHHHHHHHH----------hhhCCCeEEEEccccchHHHHHHc-cCCCCcEEecCCc
Q 025891 148 AVDPNKDIIMYLNSPG---GSVTAGMAIFDTI----------RHIRPDVSTVCVGLAASMGAFLLS-AGTKGKRYSLPNS 213 (246)
Q Consensus 148 ~~d~~k~I~L~INSPG---GsV~aGlaIyD~I----------r~~k~~V~Tvv~G~AASaAslIl~-AGdkgkR~a~pnS 213 (246)
...+..+|.+.|++|| |.-.+.+.|+..| |....||.+.+.|.|.|.|.+-.- .+++ .+++|
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r--l~AL~-- 135 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR--LIALP-- 135 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc--hhcCC--
Confidence 3456889999999999 5556666665444 455679999999999997755432 2555 78899
Q ss_pred EEEEEc
Q 025891 214 RIMIHQ 219 (246)
Q Consensus 214 ~iMIHq 219 (246)
-.|||-
T Consensus 136 ga~i~v 141 (234)
T PF06833_consen 136 GAMIHV 141 (234)
T ss_pred CCeeec
Confidence 445664
No 136
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=88.62 E-value=3.4 Score=42.12 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=63.7
Q ss_pred eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHH---H------H-HHHHHHHhh-h--CCCeEEEEccccch
Q 025891 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT---A------G-MAIFDTIRH-I--RPDVSTVCVGLAAS 193 (246)
Q Consensus 127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~---a------G-laIyD~Ir~-~--k~~V~Tvv~G~AAS 193 (246)
.+|.+++...+.+...+. +-.+. .-||...++|+|+.+. + + -.|+..+.. . ..|..+++.|-|++
T Consensus 141 ~GGs~g~~~~~Ki~r~~e-lA~~~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~g 218 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQE-IAAQC-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTA 218 (569)
T ss_pred cCCCCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 577788877777764443 33222 5689999999998762 1 1 135544333 3 36899999999999
Q ss_pred HHHHHHccCCCCcEEec-CCcEEEEEcC
Q 025891 194 MGAFLLSAGTKGKRYSL-PNSRIMIHQP 220 (246)
Q Consensus 194 aAslIl~AGdkgkR~a~-pnS~iMIHqP 220 (246)
.|+++...++. .+|. +++.+.+--|
T Consensus 219 GgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 219 GGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 99999988887 6665 5788888766
No 137
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=88.40 E-value=2 Score=43.54 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=42.5
Q ss_pred HHHHHhhhCCCeEEEEc-cccchHH-HHHHccCCCCcEEec-------CCcEEEEEcCCCC
Q 025891 172 IFDTIRHIRPDVSTVCV-GLAASMG-AFLLSAGTKGKRYSL-------PNSRIMIHQPLGG 223 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~-G~AASaA-slIl~AGdkgkR~a~-------pnS~iMIHqP~~g 223 (246)
++..|..++.||.+.+. |.|..+| .-|+++||- |++. ++++|.+-...-|
T Consensus 361 ~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~G 419 (550)
T PRK08184 361 TLKRLDVTSRSLFALIEPGSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFG 419 (550)
T ss_pred HHHHHHhCCCCEEEEECCCceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECcccccc
Confidence 45567777899999997 9999999 999999999 9999 9999887666654
No 138
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=85.87 E-value=5.3 Score=37.74 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=62.4
Q ss_pred eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH----HHHH---Hh----hhCCCeEEEEccccchHH
Q 025891 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA----IFDT---IR----HIRPDVSTVCVGLAASMG 195 (246)
Q Consensus 127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla----IyD~---Ir----~~k~~V~Tvv~G~AASaA 195 (246)
++|.+.....+.+...+. +..+ ..-|+.+...|.|+-+.+|.. +... +. .-..|..+++.|-+++.+
T Consensus 145 ~gGSmG~v~geKi~ra~e-~A~~-~rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~ 222 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIE-YATN-ESLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGV 222 (296)
T ss_pred cccCcCHHHHHHHHHHHH-HHHH-cCCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHH
Confidence 445555556666655443 2222 246899999999988777662 1111 22 234688999999888888
Q ss_pred HHHHcc-CCCCcEEecCCcEEEEEcCC
Q 025891 196 AFLLSA-GTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 196 slIl~A-GdkgkR~a~pnS~iMIHqP~ 221 (246)
+..++. ||- .++.|++.+.+--|.
T Consensus 223 aas~a~l~Di--iiae~~A~IgfAGPr 247 (296)
T CHL00174 223 TASFGMLGDI--IIAEPNAYIAFAGKR 247 (296)
T ss_pred HHHHHHcccE--EEEeCCeEEEeeCHH
Confidence 888665 988 889999999987774
No 139
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=85.23 E-value=5 Score=40.26 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=65.0
Q ss_pred EeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH-------HHHHHhhh--CCCeEEEEccccchHHH
Q 025891 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-------IFDTIRHI--RPDVSTVCVGLAASMGA 196 (246)
Q Consensus 126 fL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla-------IyD~Ir~~--k~~V~Tvv~G~AASaAs 196 (246)
|++|.+.....+.+...+. +..+. .-|+...++|.|+.+.++.. |+-.+... ..|+.+++.|-|...++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e-~A~~~-~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMD-LAMKM-GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHH-HHHHc-CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 3567777777777764443 33223 46899999999998755432 33222222 35889999999999999
Q ss_pred HHHccCCCCcEEecCC-cEEEEEcCC
Q 025891 197 FLLSAGTKGKRYSLPN-SRIMIHQPL 221 (246)
Q Consensus 197 lIl~AGdkgkR~a~pn-S~iMIHqP~ 221 (246)
+.++.||. ++|.++ +.+.+--|.
T Consensus 171 ~~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 171 YSPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHhcCc--eEEeccceEEEecChH
Confidence 99999998 999996 467776553
No 140
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=84.02 E-value=1.7 Score=37.32 Aligned_cols=44 Identities=20% Similarity=0.486 Sum_probs=31.6
Q ss_pred EEEeccccChhHHHHHHHHHHh-hhhcCCCCCeEEEEeCCCCCHH
Q 025891 124 IIRCGGPVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGSVT 167 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~-L~~~d~~k~I~L~INSPGGsV~ 167 (246)
++-+.|.|+..-++.+.+++-. |....+.+.+.|++-||||-|.
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVATPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCceee
Confidence 4557899987655555544443 3445677999999999999874
No 141
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=80.84 E-value=0.48 Score=43.89 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=47.7
Q ss_pred HHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCCCC
Q 025891 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQ 225 (246)
Q Consensus 170 laIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g~~ 225 (246)
..-|..|.+++.||.+-+.|-|.++|.=|..|||- ||+.+.+.|-+.+--.|..
T Consensus 116 Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvgla 169 (292)
T KOG1681|consen 116 QDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVGLA 169 (292)
T ss_pred HHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeeehh
Confidence 34477888889999999999999999999999999 9999999999998876643
No 142
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=79.64 E-value=3.4 Score=38.21 Aligned_cols=84 Identities=18% Similarity=0.140 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEeCCCC-----C---------------HHHHHHHHHHHhhhCCCeEEEEccccchHH
Q 025891 136 ANIIVAQLLYLDAVDPNKDIIMYLNSPGG-----S---------------VTAGMAIFDTIRHIRPDVSTVCVGLAASMG 195 (246)
Q Consensus 136 A~~iiaqLl~L~~~d~~k~I~L~INSPGG-----s---------------V~aGlaIyD~Ir~~k~~V~Tvv~G~AASaA 195 (246)
.+.+.+.|..|..++..+-|.|.=-+||= + |..--.+++.|..++.||.+-++|.|.+.|
T Consensus 60 ~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGG 139 (291)
T KOG1679|consen 60 VKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGG 139 (291)
T ss_pred HHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccc
Confidence 44555555566665555444444445661 1 344455788889999999999999999999
Q ss_pred HHHHccCCCCcEEecCCcEEEEEcCC
Q 025891 196 AFLLSAGTKGKRYSLPNSRIMIHQPL 221 (246)
Q Consensus 196 slIl~AGdkgkR~a~pnS~iMIHqP~ 221 (246)
-=+++|||- |++..++.+.+-+..
T Consensus 140 LElALACDi--Rva~s~akmGLvET~ 163 (291)
T KOG1679|consen 140 LELALACDI--RVAASSAKMGLVETK 163 (291)
T ss_pred hhhhhhccc--eehhhhccccccccc
Confidence 999999999 999999998876654
No 143
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=78.82 E-value=4.1 Score=40.37 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=63.0
Q ss_pred eccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC--CHHHHHH-------HHHHHhhh--CCCeEEEEccccchHH
Q 025891 127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG--SVTAGMA-------IFDTIRHI--RPDVSTVCVGLAASMG 195 (246)
Q Consensus 127 L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGG--sV~aGla-------IyD~Ir~~--k~~V~Tvv~G~AASaA 195 (246)
++|.+.+...+.+...+. +..+. .-|+...++|.|+ .+.+|+. |+..+... ..|+.+++.|-|...+
T Consensus 69 ~gGs~g~~~~~Ki~ra~~-~A~~~-~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~ 146 (493)
T PF01039_consen 69 LGGSVGEVHGEKIARAIE-LALEN-GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGG 146 (493)
T ss_dssp GGGTBSHHHHHHHHHHHH-HHHHH-TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGG
T ss_pred ecCCCCcccceeeehHHH-HHHHc-CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccch
Confidence 466677777777665443 32222 4588888999999 5444433 33322222 4688999999999999
Q ss_pred HHHHccCCCCcEEecCC-cEEEEEcCC
Q 025891 196 AFLLSAGTKGKRYSLPN-SRIMIHQPL 221 (246)
Q Consensus 196 slIl~AGdkgkR~a~pn-S~iMIHqP~ 221 (246)
+++...++. .+|.+. +.+.+.-|.
T Consensus 147 A~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 147 AYLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp GHHHHHSSE--EEEETTTCEEESSTHH
T ss_pred hhcccccCc--cccCccceEEEecccc
Confidence 999999998 888887 999886663
No 144
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=70.76 E-value=18 Score=36.87 Aligned_cols=91 Identities=21% Similarity=0.369 Sum_probs=63.2
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------CCHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 197 (246)
Q Consensus 128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG----------GsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl 197 (246)
+|.|+.+.+..- +++..+-... .=||.+..|.|| |-+--|-.|.+++-..+.|..|++.+.+.++|.+
T Consensus 337 ~G~l~~~sa~Ka-ArFI~~cd~~-~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADKA-ARFIRLCDAF-NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred ccccchHHHHHH-HHHHHhhhcc-CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceee
Confidence 667777765443 2333332222 568999999999 5567777889999999999999999999999888
Q ss_pred HHccCCCCc--EEecCCcEEEEEcC
Q 025891 198 LLSAGTKGK--RYSLPNSRIMIHQP 220 (246)
Q Consensus 198 Il~AGdkgk--R~a~pnS~iMIHqP 220 (246)
..++..-+- -++-|++++.+-.|
T Consensus 415 ~M~~~~~~~~~~~AwP~a~iaVMG~ 439 (526)
T COG4799 415 VMGGKALGPDFNYAWPTAEIAVMGP 439 (526)
T ss_pred eecCccCCCceeEecCcceeeecCH
Confidence 877654422 34455555554433
No 145
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=70.47 E-value=32 Score=29.57 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=54.7
Q ss_pred EeccccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHhh--------------------------
Q 025891 126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-------------------------- 178 (246)
Q Consensus 126 fL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir~-------------------------- 178 (246)
.|....++...+.+.+.+..++. ..+.++|-+ |-+||++..+..|.+.+-.
T Consensus 65 ~i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (224)
T cd06567 65 RIPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGSL 142 (224)
T ss_pred EECccCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCcc
Confidence 34443335556666666666654 456677666 4689999999999887764
Q ss_pred hCCCeEEEEccccchHHHHHHccCCC
Q 025891 179 IRPDVSTVCVGLAASMGAFLLSAGTK 204 (246)
Q Consensus 179 ~k~~V~Tvv~G~AASaAslIl~AGdk 204 (246)
...||+.++.+..+|+|-+++.+=..
T Consensus 143 ~~~pv~vL~~~~taSaaE~~a~~lk~ 168 (224)
T cd06567 143 YDGPLVVLVNEGSASASEIFAGALQD 168 (224)
T ss_pred cCCCEEEEECCCCccHHHHHHHHHHh
Confidence 23589999999999999998877544
No 146
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=67.60 E-value=23 Score=32.64 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=38.5
Q ss_pred HHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEE
Q 025891 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIM 216 (246)
Q Consensus 171 aIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iM 216 (246)
.+.+.||.++.||..-+.|.|+-+|.-|.+.||- .++.+++.|.
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~ 159 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFS 159 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCcccc
Confidence 3567788999999999999999999999999998 7788888764
No 147
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=65.82 E-value=38 Score=29.72 Aligned_cols=88 Identities=20% Similarity=0.213 Sum_probs=58.0
Q ss_pred cHhhhhccCcEEE--eccccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHhh------------
Q 025891 114 NVLSQLFQHRIIR--CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH------------ 178 (246)
Q Consensus 114 dv~s~L~~~RIIf--L~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir~------------ 178 (246)
|-+++++.. |-| +.. .+....+.+.+.|..+...+ .+.++|-+ +.+||++..+..|...+-.
T Consensus 41 ~~~~~~~~~-igYi~i~s-f~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g 117 (211)
T cd07560 41 DPYSRYLTP-IGYIRITS-FSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNG 117 (211)
T ss_pred CCcceeeCc-eEEEEEcc-cCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 344444444 434 332 34556677777777666543 56666665 3679999998888774432
Q ss_pred ------------hCCCeEEEEccccchHHHHHHccCCC
Q 025891 179 ------------IRPDVSTVCVGLAASMGAFLLSAGTK 204 (246)
Q Consensus 179 ------------~k~~V~Tvv~G~AASaAslIl~AGdk 204 (246)
...||+.++.+..+|+|-+++.+=..
T Consensus 118 ~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~lk~ 155 (211)
T cd07560 118 KREAYASDDGGLYDGPLVVLVNGGSASASEIVAGALQD 155 (211)
T ss_pred ceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHHhh
Confidence 34578889999999999988877544
No 148
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=65.63 E-value=23 Score=34.81 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=65.5
Q ss_pred CcEEEeccc-----cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-----CCCCCHHH-------------------HHHH
Q 025891 122 HRIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-------------------GMAI 172 (246)
Q Consensus 122 ~RIIfL~G~-----Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-----SPGGsV~a-------------------GlaI 172 (246)
.|+|-|+-| ++-++...+..+|..++..+..+-|+|-=+ |-||+|-+ =+.+
T Consensus 48 ~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl 127 (401)
T KOG1684|consen 48 ARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSL 127 (401)
T ss_pred eeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 366776655 677788888888888876554554444333 34688532 2234
Q ss_pred HHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEE
Q 025891 173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRI 215 (246)
Q Consensus 173 yD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~i 215 (246)
...|-.+..|+.++.+|+-++.|.=|...|.- |++.+.+.+
T Consensus 128 ~~~igtY~KP~ValmdGITMGgG~GLS~hg~f--RVATerT~~ 168 (401)
T KOG1684|consen 128 NHLIGTYLKPYVALMDGITMGGGVGLSVHGRF--RVATERTVF 168 (401)
T ss_pred HHHHHHhcCceEEEeeceeecCCcceeeccee--EEeecccee
Confidence 44666778899999999999999999999988 888777644
No 149
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=56.35 E-value=50 Score=30.74 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=54.4
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHh------------------------hhCCCeEE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIR------------------------HIRPDVST 185 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir------------------------~~k~~V~T 185 (246)
.+....+.+.+.|..|+..+ .+.++|-+ +-+||++..+..|.+.+- ....||..
T Consensus 161 f~~~~~~~~~~~l~~l~~~~-~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~v 239 (334)
T TIGR00225 161 FSEHTTEDVKKALDKLEKKN-AKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVV 239 (334)
T ss_pred cccchHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEE
Confidence 35556777888887776543 56777766 479999999998888652 12458999
Q ss_pred EEccccchHHHHHHccCCC
Q 025891 186 VCVGLAASMGAFLLSAGTK 204 (246)
Q Consensus 186 vv~G~AASaAslIl~AGdk 204 (246)
++.+..||+|-+++.+-..
T Consensus 240 Lvn~~TaSaaE~~a~~l~~ 258 (334)
T TIGR00225 240 LVNRGSASASEIFAGALQD 258 (334)
T ss_pred EECCCCCcHHHHHHHHHHh
Confidence 9999999999998877544
No 150
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.85 E-value=79 Score=26.73 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=41.6
Q ss_pred CcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 122 ~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
.+|.++++. +++.+.+.+.| ....|. +.+.- ..|--+-.+-.+|.+.|+..++++.-++.|.
T Consensus 49 ~~ifllG~~--~~~~~~~~~~l---~~~yP~--l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 49 KRIFLLGGS--EEVLEKAAANL---RRRYPG--LRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred CeEEEEeCC--HHHHHHHHHHH---HHHCCC--eEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 366666664 56666666665 333443 44442 2232477888999999999999999988874
No 151
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.86 E-value=1.2e+02 Score=25.56 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=40.6
Q ss_pred CcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcccc
Q 025891 122 HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLA 191 (246)
Q Consensus 122 ~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~A 191 (246)
.||.++++ ++++.+.+.+.| ....|.-.|.-+-+-|-+...+. .|.+.|+..++++.-++.|.=
T Consensus 47 ~~v~llG~--~~~~~~~~~~~l---~~~yp~l~i~g~~~g~~~~~~~~-~i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 47 LRVFLLGA--KPEVLEKAAERL---RARYPGLKIVGYHHGYFGPEEEE-EIIERINASGADILFVGLGAP 110 (171)
T ss_pred CeEEEECC--CHHHHHHHHHHH---HHHCCCcEEEEecCCCCChhhHH-HHHHHHHHcCCCEEEEECCCC
Confidence 45666655 355555555554 34445444554456565654444 399999999999999988853
No 152
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=47.43 E-value=35 Score=25.72 Aligned_cols=78 Identities=14% Similarity=0.272 Sum_probs=44.6
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEE------EEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHH
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM------YLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGA 196 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L------~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAs 196 (246)
-++.+.|+++-..++.+.+++..+-...+.+.+.| ||+|.| +..-..++..++.. .+..+..|.-...--
T Consensus 10 ~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg--i~~L~~~~~~~~~~--g~~l~l~~~~~~v~~ 85 (106)
T TIGR02886 10 LIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG--LGVILGRYKKIKNE--GGEVIVCNVSPAVKR 85 (106)
T ss_pred EEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH--HHHHHHHHHHHHHc--CCEEEEEeCCHHHHH
Confidence 46789999999999999998865432233455555 344433 11112233444433 345555666666666
Q ss_pred HHHccCCC
Q 025891 197 FLLSAGTK 204 (246)
Q Consensus 197 lIl~AGdk 204 (246)
++-.+|-.
T Consensus 86 ~l~~~gl~ 93 (106)
T TIGR02886 86 LFELSGLF 93 (106)
T ss_pred HHHHhCCc
Confidence 66555543
No 153
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=45.13 E-value=1.3e+02 Score=24.12 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHhh-----------------------------hCCCe
Q 025891 134 DMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-----------------------------IRPDV 183 (246)
Q Consensus 134 ~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir~-----------------------------~k~~V 183 (246)
...+.+.+.|..+.. ...+.++|-| +.+||+...+..+...+.. ...+|
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 344555555555544 3466777777 4788998888888775542 34578
Q ss_pred EEEEccccchHHHHHHccCCC
Q 025891 184 STVCVGLAASMGAFLLSAGTK 204 (246)
Q Consensus 184 ~Tvv~G~AASaAslIl~AGdk 204 (246)
+.++.+.++|+|-+++.+-..
T Consensus 94 ~vL~~~~t~Saae~fa~~lk~ 114 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASALKD 114 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHHHh
Confidence 889999999999998877544
No 154
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=44.83 E-value=1.3e+02 Score=22.61 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=47.6
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHhhhC-CCeEEEEccccchHHHHHHc
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLN-SPGGSVTAGMAIFDTIRHIR-PDVSTVCVGLAASMGAFLLS 200 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-SPGGsV~aGlaIyD~Ir~~k-~~V~Tvv~G~AASaAslIl~ 200 (246)
.++.+.|++|...++.+.++++..-.+...+.+.|.+. -+-=+.+....+.+..+..+ ..+..+..|+-....-++-.
T Consensus 12 ~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v~~~l~~ 91 (109)
T cd07041 12 LVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEVAQTLVE 91 (109)
T ss_pred EEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 36679999999999999888764322223444555332 11122333344455555543 34566666766666666666
Q ss_pred cCCC
Q 025891 201 AGTK 204 (246)
Q Consensus 201 AGdk 204 (246)
+|-.
T Consensus 92 ~gl~ 95 (109)
T cd07041 92 LGID 95 (109)
T ss_pred hCCC
Confidence 6643
No 155
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=44.30 E-value=82 Score=30.78 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHhhh-------------------------CCCeEE
Q 025891 132 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRHI-------------------------RPDVST 185 (246)
Q Consensus 132 dd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir~~-------------------------k~~V~T 185 (246)
++...+.+..+|..|+.+. .+.++|-+ |-|||...++..|.+..... ..|+.+
T Consensus 214 ~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~Plvv 292 (406)
T COG0793 214 GEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVV 292 (406)
T ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEE
Confidence 4556777888888888765 78888887 57999999999999877621 247888
Q ss_pred EEccccchHHHHHHccCC
Q 025891 186 VCVGLAASMGAFLLSAGT 203 (246)
Q Consensus 186 vv~G~AASaAslIl~AGd 203 (246)
++.+-.||++-+++-|=.
T Consensus 293 Lvn~~SASAsEI~agalq 310 (406)
T COG0793 293 LVNEGSASASEIFAGALQ 310 (406)
T ss_pred EECCCCccHHHHHHHHHH
Confidence 888899999888776644
No 156
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=44.27 E-value=1.2e+02 Score=29.15 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=55.3
Q ss_pred CcEEEec-cccChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHhh---------------------
Q 025891 122 HRIIRCG-GPVEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH--------------------- 178 (246)
Q Consensus 122 ~RIIfL~-G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir~--------------------- 178 (246)
++|-||. ...+...++.+.+.|..++..+ .+.++|-+ |-|||.+.++..|.+.+-.
T Consensus 194 ~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~ 272 (389)
T PLN00049 194 PKIGYIKLTTFNQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADG 272 (389)
T ss_pred CCEEEEEeccccchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCC
Confidence 3666643 1234566778888888776644 56677666 4689999999999887721
Q ss_pred -----hCCCeEEEEccccchHHHHHHccC
Q 025891 179 -----IRPDVSTVCVGLAASMGAFLLSAG 202 (246)
Q Consensus 179 -----~k~~V~Tvv~G~AASaAslIl~AG 202 (246)
...|+++++.+..||++-+++.+=
T Consensus 273 ~~~~~~~~PvvVLvn~~TaSasEi~a~al 301 (389)
T PLN00049 273 SSAIATSEPLAVLVNKGTASASEILAGAL 301 (389)
T ss_pred CccccCCCCEEEEECCCCccHHHHHHHHH
Confidence 124778888888888888877653
No 157
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.32 E-value=74 Score=25.55 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=41.0
Q ss_pred CcEEEeccccChhH--HHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH--HHHHHhhhCCCeEEEEcc
Q 025891 122 HRIIRCGGPVEDDM--ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA--IFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 122 ~RIIfL~G~Idd~~--A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla--IyD~Ir~~k~~V~Tvv~G 189 (246)
+||+++|.-|.... ...+...| ....+..++.+.=-+-+|.....+. +...+...++++.++..|
T Consensus 2 ~~v~~~GDSit~g~~~~~~~~~~l---~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G 70 (191)
T cd01834 2 DRIVFIGNSITDRGGYVGYVETYL---AARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFG 70 (191)
T ss_pred CEEEEeCCChhhccccHHHHHHHH---HHhCCCCCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEee
Confidence 58999999998855 33333333 3333445677766688888776653 333444556788888766
No 158
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=43.24 E-value=50 Score=28.40 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhhCCCeEEE
Q 025891 157 MYLNSPGGSVTAGMAIFDTIRHIRPDVSTV 186 (246)
Q Consensus 157 L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tv 186 (246)
|.|| ||+.-....+|.|+|+....|+.=|
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vEV 98 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVEV 98 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEEE
Confidence 6677 9999999999999999999886644
No 159
>smart00245 TSPc tail specific protease. tail specific protease
Probab=42.29 E-value=1.5e+02 Score=25.33 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=47.9
Q ss_pred cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHhh-------------------------hCCCeE
Q 025891 131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-SPGGSVTAGMAIFDTIRH-------------------------IRPDVS 184 (246)
Q Consensus 131 Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-SPGGsV~aGlaIyD~Ir~-------------------------~k~~V~ 184 (246)
.+..+.+.+.+.+..|... ..+.+.|-+= .+||.+.++..|.+.+-. ...||+
T Consensus 38 f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 116 (192)
T smart00245 38 FSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLV 116 (192)
T ss_pred EChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEE
Confidence 3444556666666666644 2566666664 388888888877776621 124688
Q ss_pred EEEccccchHHHHHHccCCC
Q 025891 185 TVCVGLAASMGAFLLSAGTK 204 (246)
Q Consensus 185 Tvv~G~AASaAslIl~AGdk 204 (246)
.++.+..+|+|-+++.+=..
T Consensus 117 vL~~~~TaSaaE~~a~~lk~ 136 (192)
T smart00245 117 VLVNEGTASASEIFAGALKD 136 (192)
T ss_pred EEECCCCeeHHHHHHHHHhh
Confidence 88888888888888776544
No 160
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=42.12 E-value=1.4e+02 Score=22.16 Aligned_cols=75 Identities=16% Similarity=0.319 Sum_probs=41.4
Q ss_pred EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEE------EEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHH
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM------YLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF 197 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L------~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAsl 197 (246)
+|.+.|.++-..+..+.+.|..+......+.|.| +|+|-|- ..=..++..++.. .+..++.|.-....-+
T Consensus 15 vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssgl--~~L~~~~~~~~~~--~~~~~l~~~~~~~~~~ 90 (108)
T TIGR00377 15 IVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSGL--GVLLGRYKQVRRV--GGQLVLVSVSPRVARL 90 (108)
T ss_pred EEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEccccH--HHHHHHHHHHHhc--CCEEEEEeCCHHHHHH
Confidence 5779999999888888888876544323445655 3444431 1112233344432 3445555555555444
Q ss_pred HHccC
Q 025891 198 LLSAG 202 (246)
Q Consensus 198 Il~AG 202 (246)
+-..|
T Consensus 91 l~~~~ 95 (108)
T TIGR00377 91 LDITG 95 (108)
T ss_pred HHHhC
Confidence 44433
No 161
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=40.97 E-value=1.7e+02 Score=26.55 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHhhhC------------------------------
Q 025891 132 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRHIR------------------------------ 180 (246)
Q Consensus 132 dd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir~~k------------------------------ 180 (246)
.....+.+.+.+..++.++ .+.++|-+ +-+||.+..+..|.+.+-.-.
T Consensus 75 ~~~~~~~l~~a~~~l~~~~-~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
T cd07561 75 TSGYDDELNQAFAEFKAQG-VTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATLEYNDKRSANNEDLLFSSKTLA 153 (256)
T ss_pred ccchHHHHHHHHHHHHHcC-CCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEEEecCCccCCCceeeccccccc
Confidence 3446677888888787654 56666665 469999999999888776410
Q ss_pred -------CCeEEEEccccchHHHHHHccCC
Q 025891 181 -------PDVSTVCVGLAASMGAFLLSAGT 203 (246)
Q Consensus 181 -------~~V~Tvv~G~AASaAslIl~AGd 203 (246)
.||++++.+..||+|-+++.+=.
T Consensus 154 ~~~~~~~~pv~VL~~~~TASAaE~~a~~Lk 183 (256)
T cd07561 154 GGNSLNLSKVYVLTSGSTASASELVINSLK 183 (256)
T ss_pred ccCcCCcccEEEEECCCcccHHHHHHHHhh
Confidence 25777777888888887776543
No 162
>PRK11186 carboxy-terminal protease; Provisional
Probab=40.01 E-value=1.2e+02 Score=31.85 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHhhhhcCCCCCeEEEE-eCCCCCHHHHHHHHHHHhh-------------------------hCCCeEE
Q 025891 132 EDDMANIIVAQLLYLDAVDPNKDIIMYL-NSPGGSVTAGMAIFDTIRH-------------------------IRPDVST 185 (246)
Q Consensus 132 dd~~A~~iiaqLl~L~~~d~~k~I~L~I-NSPGGsV~aGlaIyD~Ir~-------------------------~k~~V~T 185 (246)
.....+.+.++|..|+.. +.+.++|-+ |-|||++.++..|.+.+-. ...|+++
T Consensus 364 ~~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvV 442 (667)
T PRK11186 364 YVGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVV 442 (667)
T ss_pred ccchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEE
Confidence 344577788888777654 367777776 5799999999999886421 1348889
Q ss_pred EEccccchHHHHHHccCCC
Q 025891 186 VCVGLAASMGAFLLSAGTK 204 (246)
Q Consensus 186 vv~G~AASaAslIl~AGdk 204 (246)
.+.+..||++-+++.+=..
T Consensus 443 LVN~~SASASEIfA~alqd 461 (667)
T PRK11186 443 LVDRYSASASEIFAAAMQD 461 (667)
T ss_pred EeCCCCccHHHHHHHHHHh
Confidence 9999999999988887543
No 163
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=39.72 E-value=1.2e+02 Score=28.68 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=50.7
Q ss_pred cEEEeccc--cChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccc
Q 025891 123 RIIRCGGP--VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (246)
Q Consensus 123 RIIfL~G~--Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AA 192 (246)
.+|=++.. .|-+ +.+-|.||..++.++-|.||+-+-|-.+.++..+.++.+. +.||..+..|..+
T Consensus 179 ~~VS~Gn~~~adv~----~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGTN----FVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCCC----HHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 45667777 5443 4556667777777999999999988888899888888665 7899999888765
No 164
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=36.36 E-value=87 Score=28.91 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=48.8
Q ss_pred ccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEE---c-----cccchHHHHH
Q 025891 128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVC---V-----GLAASMGAFL 198 (246)
Q Consensus 128 ~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv---~-----G~AASaAslI 198 (246)
...|-..+..++..++..++ ..-..+.+|+||++++++.++-++++..+..+.|-+ - -.|++|+=+|
T Consensus 54 tPaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t~v~lnSpGGsv~kA~~mgkLi 128 (245)
T COG3904 54 TPAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIATGVTLNSPGGSVAKACSMGKLI 128 (245)
T ss_pred CCcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEEEEEecCCCCcHHHHHhhhhhh
Confidence 45566655555666655443 567999999999999999999999999998888722 1 2566666555
No 165
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=36.03 E-value=47 Score=30.97 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHHHHHhhhCCCeEEEEccccchHHHHHHccCCCCcEEecCCcEEEEEcCCCC
Q 025891 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGG 223 (246)
Q Consensus 170 laIyD~Ir~~k~~V~Tvv~G~AASaAslIl~AGdkgkR~a~pnS~iMIHqP~~g 223 (246)
+.+-..||.++.+|.+.|.|.|.+.|-++-.-||- -++..|+.|.=.-|..|
T Consensus 106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VG 157 (282)
T COG0447 106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVG 157 (282)
T ss_pred hhHHHHHHhCCcceEEEEeeEeccCccEEEEEeee--eeehhcchhcCCCCCcc
Confidence 34455788899999999999999999999999999 78999999998888855
No 166
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=35.86 E-value=1.1e+02 Score=25.29 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=30.5
Q ss_pred CcEEEeccccChhH--HHHHHHHHHhhhhcCCCCCeEEEEeCCCCC--HHHHHHHHHHHh
Q 025891 122 HRIIRCGGPVEDDM--ANIIVAQLLYLDAVDPNKDIIMYLNSPGGS--VTAGMAIFDTIR 177 (246)
Q Consensus 122 ~RIIfL~G~Idd~~--A~~iiaqLl~L~~~d~~k~I~L~INSPGGs--V~aGlaIyD~Ir 177 (246)
..+-|..=+|+|.. ...-+++++.+=..- .++--|++||-.|. .+.++.||++|+
T Consensus 91 ~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 91 NGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp TT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45666666776543 222333333222212 34678889988876 799999999986
No 167
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=34.63 E-value=56 Score=24.57 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=24.1
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEE
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIM 157 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L 157 (246)
.++.+.|+++-..++.|.+++...-.+...+.|.|
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vil 44 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVI 44 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 47889999999999999988864332222344444
No 168
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.09 E-value=2.2e+02 Score=21.77 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcc
Q 025891 152 NKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 152 ~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G 189 (246)
.+++.|.| |-.|.-.+-.......+..+.+|.++...
T Consensus 47 ~~d~vi~i-S~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 47 PGDVVIAI-SNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45777777 66677777777788888888888877553
No 169
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=33.05 E-value=1.6e+02 Score=28.08 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=45.4
Q ss_pred EEEeccccChhHHHHHHHHHHhhh---hcCCCCCeEEEEeCCCCCHHH---HHHHHHHHhhhCCCeEEEEccccchH
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYLD---AVDPNKDIIMYLNSPGGSVTA---GMAIFDTIRHIRPDVSTVCVGLAASM 194 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L~---~~d~~k~I~L~INSPGGsV~a---GlaIyD~Ir~~k~~V~Tvv~G~AASa 194 (246)
|+-+|-+.+..-++.+...|.... .++..+.=.+.|||.+-...+ +..+...++...+++.+++.|.-++.
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~ 77 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQS 77 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcccc
Confidence 345777888777777887776432 122333457779999877765 45555555555566777777865553
No 170
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=32.54 E-value=69 Score=28.86 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC
Q 025891 136 ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR 180 (246)
Q Consensus 136 A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k 180 (246)
.+.|.++++.+..-...|.|-+|++.++|.|+.+.-|-++++.=+
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK 75 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGK 75 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCC
Confidence 455666666554444578999999999999999988888887643
No 171
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=32.40 E-value=1e+02 Score=28.53 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=40.0
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEE
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv 187 (246)
||+|++.-+...-.+.+.+.|-.|..+.+.+-+..--....|...-...+++.|.....+|.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEcc
Confidence 68898777766444555555556665543332222222333333556889999999999988875
No 172
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.31 E-value=78 Score=28.78 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=31.6
Q ss_pred CeEEEEeCCC-CCHHHHHHHHHHHhhhCCCeEEEEccc
Q 025891 154 DIIMYLNSPG-GSVTAGMAIFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 154 ~I~L~INSPG-GsV~aGlaIyD~Ir~~k~~V~Tvv~G~ 190 (246)
.|.+.+..+| |.++-+++|.+.|+. ..+|.-++.|.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 3788999999 999999999999998 88887777666
No 173
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=31.30 E-value=3.1e+02 Score=24.16 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCeEEEE-eCCCCCHHHHHHHHHHHhh---------------------------------hCCCeEEEEccccchHHHHH
Q 025891 153 KDIIMYL-NSPGGSVTAGMAIFDTIRH---------------------------------IRPDVSTVCVGLAASMGAFL 198 (246)
Q Consensus 153 k~I~L~I-NSPGGsV~aGlaIyD~Ir~---------------------------------~k~~V~Tvv~G~AASaAslI 198 (246)
+.++|-+ +.+||+...+..|...+-. .+.||+.++.+..+|+|-.+
T Consensus 96 ~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~~ 175 (250)
T cd07563 96 DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEF 175 (250)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHHH
Confidence 5666665 3578898888888777641 12478889999999999888
Q ss_pred HccCCC
Q 025891 199 LSAGTK 204 (246)
Q Consensus 199 l~AGdk 204 (246)
+.+-..
T Consensus 176 a~~lk~ 181 (250)
T cd07563 176 AYALKQ 181 (250)
T ss_pred HHHHHh
Confidence 877544
No 174
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.49 E-value=1.2e+02 Score=24.72 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=8.4
Q ss_pred HHHHHhhhCCCeEEEEcc
Q 025891 172 IFDTIRHIRPDVSTVCVG 189 (246)
Q Consensus 172 IyD~Ir~~k~~V~Tvv~G 189 (246)
+.+.+...++++..+..|
T Consensus 49 ~~~~~~~~~pd~vii~~G 66 (177)
T cd01844 49 VAELLRDVPADLYIIDCG 66 (177)
T ss_pred HHHHHHhcCCCEEEEEec
Confidence 334444445555555444
No 175
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=29.59 E-value=3.3e+02 Score=24.38 Aligned_cols=84 Identities=21% Similarity=0.198 Sum_probs=51.7
Q ss_pred hhhhccCcEEEeccc-cChhHHHHHHHHHHhhhhcCCCCCeEEEEe-CCCCCHHHHHHHHHHHhh---------------
Q 025891 116 LSQLFQHRIIRCGGP-VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-SPGGSVTAGMAIFDTIRH--------------- 178 (246)
Q Consensus 116 ~s~L~~~RIIfL~G~-Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN-SPGGsV~aGlaIyD~Ir~--------------- 178 (246)
..++..++|-||.-+ .+++..+.+.++++... + .+.++|-+= -+||++.. .|.+.+..
T Consensus 81 ~~~~~~~~igYi~i~~~~~~~~~~~~~~~~~~~--~-~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~ 155 (266)
T cd07562 81 VEELSDGRIGYVHIPDMGDDGFAEFLRDLLAEV--D-KDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPV 155 (266)
T ss_pred HHHhcCCcEEEEEeCCCChHHHHHHHHHHHhcC--C-CceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCC
Confidence 345566788776333 24444455555554321 2 567777663 57777433 34444421
Q ss_pred ------hCCCeEEEEccccchHHHHHHccCCC
Q 025891 179 ------IRPDVSTVCVGLAASMGAFLLSAGTK 204 (246)
Q Consensus 179 ------~k~~V~Tvv~G~AASaAslIl~AGdk 204 (246)
.+.||..++.+.++|+|-+++.+-..
T Consensus 156 ~~p~~~~~~pv~vL~~~~t~SaaE~~a~~lk~ 187 (266)
T cd07562 156 TYPSGRWRGPVVVLVNEGSASDAEIFAYGFRA 187 (266)
T ss_pred CCcccccCCCEEEEECCCCCchHHHHHHHHHH
Confidence 35689999999999999998876544
No 176
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=28.46 E-value=2.7e+02 Score=24.70 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=46.8
Q ss_pred CCCccchhhccHhhhhccCcEEEeccccChhHHHHHHHHHHhhh-hcCCCCCeEEEE---eCCCCCHHHHHHHHHHHhhh
Q 025891 104 PPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLD-AVDPNKDIIMYL---NSPGGSVTAGMAIFDTIRHI 179 (246)
Q Consensus 104 ~~p~~~~~~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~-~~d~~k~I~L~I---NSPGGsV~aGlaIyD~Ir~~ 179 (246)
.||..-.+..++..+++.+--+-+ ..+.+++.|...+..|+ ..+..+.+.|.+ |...|.+..-.+-...-+..
T Consensus 65 ~p~t~d~~~~~~l~~~l~~~q~g~---ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~ 141 (191)
T cd01455 65 HPPKNNKERLETLKMMHAHSQFCW---SGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREP 141 (191)
T ss_pred cCcccchhHHHHHHHHHHhcccCc---cCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhC
Confidence 455444444467777777654433 33566677776776675 333333444444 12233344333223445567
Q ss_pred CCCeEEEEccc
Q 025891 180 RPDVSTVCVGL 190 (246)
Q Consensus 180 k~~V~Tvv~G~ 190 (246)
+.+|+||..|-
T Consensus 142 gV~iytIgiG~ 152 (191)
T cd01455 142 NVNAFVIFIGS 152 (191)
T ss_pred CCEEEEEEecC
Confidence 88999998886
No 177
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=28.09 E-value=3.9e+02 Score=23.01 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=39.0
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEcccc
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLA 191 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~A 191 (246)
+|.++++ ++++.+.+.+.|. ..-|.-.|.-+ +.+ -+-.+-.+|.+.|+..++++.-|..|.=
T Consensus 50 ~vfllG~--~~~v~~~~~~~l~---~~yP~l~i~g~-~g~-f~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 50 PIFLYGG--KPDVLQQLKVKLI---KEYPKLKIVGA-FGP-LEPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred eEEEECC--CHHHHHHHHHHHH---HHCCCCEEEEE-CCC-CChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5666655 3566666666653 33344444433 322 2334557799999999999999988853
No 178
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.24 E-value=2.1e+02 Score=25.64 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=53.4
Q ss_pred ccchhhccHhhh----hccCcEEEeccccChhH----HHHHHHHHHhhhhcCCCCCeEEEEeC-CCCCHHHHHHHHHHHh
Q 025891 107 MLLGRFQNVLSQ----LFQHRIIRCGGPVEDDM----ANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIR 177 (246)
Q Consensus 107 ~~~~~~~dv~s~----L~~~RIIfL~G~Idd~~----A~~iiaqLl~L~~~d~~k~I~L~INS-PGGsV~aGlaIyD~Ir 177 (246)
.|+|...||+.. .|+.+--.|+|.|++-. .+.-++.|+.-=.++..+.|.|-.|. .=|+.++ .-|.+.++
T Consensus 82 CVVE~~~Dv~aiE~~~~y~G~YhVL~G~iSPldgigp~~l~i~~L~~Ri~~~~v~EVIlAt~~tvEGe~Ta-~yi~~~lk 160 (195)
T TIGR00615 82 CVVEDPKDVFALEKTKEFRGRYHVLGGHISPLDGIGPEDLTIAALLKRLQEESVKEVILATNPTVEGEATA-LYIARLLQ 160 (195)
T ss_pred EEECCHHHHHHHHhhCccceEEEEccCccCccCCCChhhcCHHHHHHHHhcCCCcEEEEeCCCCchHHHHH-HHHHHHhh
Confidence 355666677653 77777777887775411 12223444322123458899999995 4455554 55889999
Q ss_pred hhCCCeEEEEccccc
Q 025891 178 HIRPDVSTVCVGLAA 192 (246)
Q Consensus 178 ~~k~~V~Tvv~G~AA 192 (246)
....+|+=+..|+-.
T Consensus 161 ~~~ikvtRlA~GiP~ 175 (195)
T TIGR00615 161 PFGVKVTRIASGLPV 175 (195)
T ss_pred hcCCcEEeeeecCCC
Confidence 877888877766543
No 179
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=25.05 E-value=2.1e+02 Score=27.67 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCCCccchh----hccHhhhhccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhh
Q 025891 103 GPPPMLLGR----FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH 178 (246)
Q Consensus 103 ~~~p~~~~~----~~dv~s~L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~ 178 (246)
+.+|+...+ +.|+++++.+..+|-+..+.++++.+.|..+++.. -|+=.+.||.-=|-+-+-.+++++++.
T Consensus 195 ~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~-----mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 195 QLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEK-----MKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred CCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHh-----cCCCeEEEeccccccccHHHHHHHHhc
Confidence 355555443 33899999999999999999999999999888643 344567789888888888899999886
Q ss_pred hC
Q 025891 179 IR 180 (246)
Q Consensus 179 ~k 180 (246)
=+
T Consensus 270 G~ 271 (336)
T KOG0069|consen 270 GK 271 (336)
T ss_pred CC
Confidence 43
No 180
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=24.40 E-value=1.8e+02 Score=22.66 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=44.2
Q ss_pred EEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH---HHHHHhhhCC-CeEEEEccccchHHHHHH
Q 025891 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA---IFDTIRHIRP-DVSTVCVGLAASMGAFLL 199 (246)
Q Consensus 124 IIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla---IyD~Ir~~k~-~V~Tvv~G~AASaAslIl 199 (246)
++.+.|+||...+..+.+.+...-... +.-.+.||--|=+.-+... +.+.++..+. .+..+..|.=-..+-.+-
T Consensus 16 vl~l~G~lD~~~a~~~~e~~~~~~~~~--~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~p~v~~~~~ 93 (117)
T COG1366 16 VLPLIGELDAARAPALKETLLEVIAAS--GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQPEVARTLE 93 (117)
T ss_pred EEEeeEEEchHHHHHHHHHHHHHHhcC--CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 678999999999999999887333322 2233777777644433332 2333333332 255555565555554444
Q ss_pred ccC
Q 025891 200 SAG 202 (246)
Q Consensus 200 ~AG 202 (246)
..|
T Consensus 94 ~~g 96 (117)
T COG1366 94 LTG 96 (117)
T ss_pred HhC
Confidence 444
No 181
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.22 E-value=1.7e+02 Score=25.12 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=26.2
Q ss_pred EEec--cccChhHHHHHHHHHHh-hhhcCCCC-CeEEEEeCCCCC
Q 025891 125 IRCG--GPVEDDMANIIVAQLLY-LDAVDPNK-DIIMYLNSPGGS 165 (246)
Q Consensus 125 IfL~--G~Idd~~A~~iiaqLl~-L~~~d~~k-~I~L~INSPGGs 165 (246)
|++. |.|+=+.++.+-.++.. ||.+|+.. .-+|.+.|||-+
T Consensus 41 I~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGld 85 (153)
T COG0779 41 IYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLD 85 (153)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCC
Confidence 4554 56665555555554442 56667643 667999999976
No 182
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=24.13 E-value=1.7e+02 Score=27.35 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=47.2
Q ss_pred hccCcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHH--HHHHHH
Q 025891 119 LFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG--MAIFDT 175 (246)
Q Consensus 119 L~~~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aG--laIyD~ 175 (246)
....|+.=..+-+++.....+.++|..|+.+...+-..|.|.|-||+--+. ..+||.
T Consensus 31 ~~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~ 89 (271)
T COG1512 31 TLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDK 89 (271)
T ss_pred cccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 345577888899999988999999999999988888999999999986544 445666
No 183
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.07 E-value=3.5e+02 Score=21.11 Aligned_cols=37 Identities=5% Similarity=0.081 Sum_probs=26.3
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEc
Q 025891 152 NKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV 188 (246)
Q Consensus 152 ~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~ 188 (246)
.+++.|.|...|+.-.....+...++....+|.++..
T Consensus 61 ~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~ 97 (153)
T cd05009 61 EGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITD 97 (153)
T ss_pred CCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEec
Confidence 3556677776665555577788888888888877743
No 184
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=23.70 E-value=2.1e+02 Score=27.32 Aligned_cols=89 Identities=24% Similarity=0.344 Sum_probs=56.3
Q ss_pred cHhhhhcc-----CcEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHH-HHHHHhhhCCCeEEEE
Q 025891 114 NVLSQLFQ-----HRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-IFDTIRHIRPDVSTVC 187 (246)
Q Consensus 114 dv~s~L~~-----~RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGla-IyD~Ir~~k~~V~Tvv 187 (246)
++-.+|-+ ...|=|+|. +-.-..+++.|..++. |+..+..+.|-=+||.-.+--+ .+.. +..+.||..++
T Consensus 160 E~~~qlt~~G~GqS~~IGiGGD--pi~Gt~fid~L~~fe~-Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~i 235 (293)
T COG0074 160 EAVSQLTEAGLGQSTAIGIGGD--PIPGTSFIDALEMFEA-DPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYI 235 (293)
T ss_pred HHHHHHHhcCCceEEEEEeCCC--CcCCccHHHHHHHHhc-CccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEE
Confidence 44555443 335556664 2222346666665554 6677888899999998654332 2222 33448999999
Q ss_pred ccccchHHHHHHccCCCCcEEecCCcEEE
Q 025891 188 VGLAASMGAFLLSAGTKGKRYSLPNSRIM 216 (246)
Q Consensus 188 ~G~AASaAslIl~AGdkgkR~a~pnS~iM 216 (246)
.|..| .+|||...-.|.++
T Consensus 236 aG~ta----------p~gkrmGhaGaiv~ 254 (293)
T COG0074 236 AGRTA----------PEGKRMGHAGAIVS 254 (293)
T ss_pred eccCC----------Cccchhhhhhhhhc
Confidence 99888 77888776666664
No 185
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=23.68 E-value=2.3e+02 Score=27.08 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=46.4
Q ss_pred CcEEEecccc--ChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEEEccccc
Q 025891 122 HRIIRCGGPV--EDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAA 192 (246)
Q Consensus 122 ~RIIfL~G~I--dd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AA 192 (246)
..+|=+++.- +-+ +.+-|.+++.++.++.|.||+-.-|-...++-...+. ...+.||.++..|..+
T Consensus 197 S~~VsiGnd~~~g~~----~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 197 STCVGIGGDPFNGTN----FIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEEeCCCCCCCCC----HHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 3466687773 332 5556666777777999999999877776777666555 2346899999888765
No 186
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=23.59 E-value=68 Score=27.65 Aligned_cols=29 Identities=34% Similarity=0.761 Sum_probs=20.1
Q ss_pred CC-CCHHHHHH------HHHHHhhhCCCeEEEEccc
Q 025891 162 PG-GSVTAGMA------IFDTIRHIRPDVSTVCVGL 190 (246)
Q Consensus 162 PG-GsV~aGla------IyD~Ir~~k~~V~Tvv~G~ 190 (246)
|| |...+++. +.+.++....||-.+|.|+
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 88 77766643 5677777777877776663
No 187
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=22.62 E-value=1.9e+02 Score=28.85 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=44.9
Q ss_pred CeEEEEcc---ccchHHHHHHccCCCCcEEecCCc-EEEEEcCCCCCCCCHHHHHHHHHHHHHHhhhcC
Q 025891 182 DVSTVCVG---LAASMGAFLLSAGTKGKRYSLPNS-RIMIHQPLGGAQGGQSDIDLQVHIMAYFLTLAF 246 (246)
Q Consensus 182 ~V~Tvv~G---~AASaAslIl~AGdkgkR~a~pnS-~iMIHqP~~g~~G~a~Di~i~A~eL~k~~~~~~ 246 (246)
.|.+.|.| -..+-++++-.||.-|.-.-.|.. ...+| +|....|....+|+.+||++||
T Consensus 373 ~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH------~G~skaM~~A~keIk~MN~lg~ 435 (441)
T COG4098 373 NVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFH------YGKSKAMKQARKEIKEMNKLGF 435 (441)
T ss_pred cceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEe------ccchHHHHHHHHHHHHHHHHhh
Confidence 56666654 568999999999988854344543 34445 5888999999999999999985
No 188
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=22.56 E-value=5.5e+02 Score=22.76 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=49.6
Q ss_pred cHhhhhccCc-EEEeccccChhHHHHHHHHHHhhhh----------------cCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 025891 114 NVLSQLFQHR-IIRCGGPVEDDMANIIVAQLLYLDA----------------VDPNKDIIMYLNSPGGSVTAGMAIFDTI 176 (246)
Q Consensus 114 dv~s~L~~~R-IIfL~G~Idd~~A~~iiaqLl~L~~----------------~d~~k~I~L~INSPGGsV~aGlaIyD~I 176 (246)
++...|.+.+ |.+++.......++.+...|..+.. .-+.+++.|.| |..|...+-..+....
T Consensus 120 ~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~i-S~sg~~~~~~~~~~~a 198 (278)
T PRK11557 120 ECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAI-SYSGERRELNLAADEA 198 (278)
T ss_pred HHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEE-cCCCCCHHHHHHHHHH
Confidence 4445555544 4444444444556655554443321 11246777766 7777788888888889
Q ss_pred hhhCCCeEEEEccccchHHH
Q 025891 177 RHIRPDVSTVCVGLAASMGA 196 (246)
Q Consensus 177 r~~k~~V~Tvv~G~AASaAs 196 (246)
+..+.+|.++........+-
T Consensus 199 k~~ga~iI~IT~~~~s~la~ 218 (278)
T PRK11557 199 LRVGAKVLAITGFTPNALQQ 218 (278)
T ss_pred HHcCCCEEEEcCCCCCchHH
Confidence 99999999887655444443
No 189
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=22.42 E-value=2e+02 Score=26.28 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=38.6
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEe---CCCCCHHHHHHHHHHHhhhCCCeEEEE
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLN---SPGGSVTAGMAIFDTIRHIRPDVSTVC 187 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~IN---SPGGsV~aGlaIyD~Ir~~k~~V~Tvv 187 (246)
||+||+.-+...=...+...|..+..+.+. + .+..| .-||. .-.-.+++.|.....++.|..
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D-~vi~NgEn~~gg~-gl~~~~~~~L~~~G~D~iTlG 65 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-D-FVIANGENAAGGK-GITPKIAKELLSAGVDVITMG 65 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-C-EEEECCccccCCC-CCCHHHHHHHHhcCCCEEEec
Confidence 688988877766566666666666554322 2 22333 34442 123578888888888888774
No 190
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=22.14 E-value=3.5e+02 Score=20.41 Aligned_cols=80 Identities=28% Similarity=0.332 Sum_probs=48.6
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCC--------CCCeEEEEeCCC-CCHHHHHHHHHHHhhhC-CCeEEEEccccc
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDP--------NKDIIMYLNSPG-GSVTAGMAIFDTIRHIR-PDVSTVCVGLAA 192 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~--------~k~I~L~INSPG-GsV~aGlaIyD~Ir~~k-~~V~Tvv~G~AA 192 (246)
.|+.+.|+++-..++.|.+.+..+-...+ .+.|.|.+..-- =+..+...|.+..+.++ ..+..+..|.--
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 57889999999999999999987665443 244444443221 23444445555555555 456666666555
Q ss_pred hHHHHHHccC
Q 025891 193 SMGAFLLSAG 202 (246)
Q Consensus 193 SaAslIl~AG 202 (246)
..-..+-.+|
T Consensus 91 ~v~~~l~~~~ 100 (117)
T PF01740_consen 91 DVRRILERSG 100 (117)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 5554444443
No 191
>PRK14640 hypothetical protein; Provisional
Probab=21.86 E-value=1.8e+02 Score=24.51 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=35.3
Q ss_pred EEec--cccChhHHHHHHHHHHh-hhhcCC-CCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEE
Q 025891 125 IRCG--GPVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTV 186 (246)
Q Consensus 125 IfL~--G~Idd~~A~~iiaqLl~-L~~~d~-~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tv 186 (246)
||+. +.|+-+.+..+-.+|-. ||.+|+ ..+-+|.+.|||=+- .=...-+..++...+|...
T Consensus 39 V~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R-pL~~~~~f~r~~G~~v~V~ 103 (152)
T PRK14640 39 VYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDR-PLFKVAQFEKYVGQEAAVT 103 (152)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCeEEEE
Confidence 4553 23666656666555542 465555 567899999999651 1122345556666655443
No 192
>PRK14635 hypothetical protein; Provisional
Probab=21.83 E-value=1.8e+02 Score=24.83 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=22.7
Q ss_pred ccChhHHHHHHHHHHh-hhhcCCCCCeEEEEeCCCCC
Q 025891 130 PVEDDMANIIVAQLLY-LDAVDPNKDIIMYLNSPGGS 165 (246)
Q Consensus 130 ~Idd~~A~~iiaqLl~-L~~~d~~k~I~L~INSPGGs 165 (246)
.|+-+.+..+-..+-. ||..++..+-+|.+.|||=+
T Consensus 49 gv~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGld 85 (162)
T PRK14635 49 SVSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAE 85 (162)
T ss_pred CcCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCC
Confidence 4665555445444432 45555667899999999954
No 193
>PRK14643 hypothetical protein; Provisional
Probab=21.69 E-value=1.9e+02 Score=24.97 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=30.6
Q ss_pred cccChhHHHHHHHHHHh-hhhcCC-CCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEE
Q 025891 129 GPVEDDMANIIVAQLLY-LDAVDP-NKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST 185 (246)
Q Consensus 129 G~Idd~~A~~iiaqLl~-L~~~d~-~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~T 185 (246)
|.|+-+.+..+-.++-. ||..|+ ...-+|.|.|||=+= .=...-|..++...+|..
T Consensus 52 ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGleR-pL~~~~df~r~~G~~V~V 109 (164)
T PRK14643 52 KPLDFDILIKANDLVSNKIDQFIKTSEKYLLEISSSGIEK-QIRSQEELVKALNQWVYV 109 (164)
T ss_pred CCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEecCCCCCC-CCCCHHHHHHhcCCeEEE
Confidence 45765555545444432 455554 456789999999651 011123455555555543
No 194
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.17 E-value=4e+02 Score=23.28 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=27.0
Q ss_pred CCCeEEEEeCCCCCHH-HHHHHHHHHhhhCCCeEEEEcccc
Q 025891 152 NKDIIMYLNSPGGSVT-AGMAIFDTIRHIRPDVSTVCVGLA 191 (246)
Q Consensus 152 ~k~I~L~INSPGGsV~-aGlaIyD~Ir~~k~~V~Tvv~G~A 191 (246)
.+.|.+.+-|||-.=. ....+...++.-...|.+|+.|..
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 3589999999976532 222455566666677888888754
No 195
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=21.05 E-value=3.3e+02 Score=22.52 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=33.1
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHhhhC--CCeEEEEccc
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGL 190 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaIyD~Ir~~k--~~V~Tvv~G~ 190 (246)
.+|-++.+.|-. +.+-|.|+..++.++-|.+||.+-+- +....+.++... .||..+-.|.
T Consensus 30 ~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 30 YVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp EEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred EEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 467777777544 33344456666679999999997443 677777777776 7888887776
No 196
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.88 E-value=3.8e+02 Score=20.26 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=47.5
Q ss_pred cEEEeccccChhHHHHHHHHHHhhhhcCCCCCeEEEEeC-CCCCHHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 198 (246)
Q Consensus 123 RIIfL~G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INS-PGGsV~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI 198 (246)
.+.+++..++. +.+.+++... + -++ |-|.+ .+........+.+.++...+.+.+++.|..++...-.
T Consensus 30 ~v~~~d~~~~~---~~l~~~~~~~---~--pd~-V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~ 97 (121)
T PF02310_consen 30 EVDILDANVPP---EELVEALRAE---R--PDV-VGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPEE 97 (121)
T ss_dssp EEEEEESSB-H---HHHHHHHHHT---T--CSE-EEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHHH
T ss_pred eEEEECCCCCH---HHHHHHHhcC---C--CcE-EEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChHH
Confidence 46677666655 4455555432 1 233 56666 7888999999999999999999999999887765543
No 197
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=20.77 E-value=3.4e+02 Score=27.80 Aligned_cols=85 Identities=22% Similarity=0.330 Sum_probs=52.3
Q ss_pred cccChhHHHHHHHHHHhhhhcCCCCCeEEEEeCCC---CC-------HHHHHHHHHHHhhhCCCeEEEEccccchHHHHH
Q 025891 129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG---GS-------VTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL 198 (246)
Q Consensus 129 G~Idd~~A~~iiaqLl~L~~~d~~k~I~L~INSPG---Gs-------V~aGlaIyD~Ir~~k~~V~Tvv~G~AASaAslI 198 (246)
|-++.+++... +.+..+-... .=|+.+..|+|| |. .-.|-.+.++...-+.|..|++.|-+.+ |.+-
T Consensus 363 G~L~s~sa~Kg-arfIe~c~q~-~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~ 439 (536)
T KOG0540|consen 363 GVLFSESAVKG-ARFIELCDQR-NIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYA 439 (536)
T ss_pred cccchhhhhhh-HHHHHHHHhc-CCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Cccc
Confidence 44445554444 2333333222 568999999998 22 2333345556666677888999988888 5555
Q ss_pred Hc----cCCCCcEEecCCcEEEEE
Q 025891 199 LS----AGTKGKRYSLPNSRIMIH 218 (246)
Q Consensus 199 l~----AGdkgkR~a~pnS~iMIH 218 (246)
.| .|+- .||-|+++|-+.
T Consensus 440 m~sr~~~gd~--~yawP~A~Iavm 461 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAVM 461 (536)
T ss_pred ccccccCCce--eEEcccceeeec
Confidence 33 3555 678888888763
No 198
>PRK14639 hypothetical protein; Provisional
Probab=20.55 E-value=2.1e+02 Score=23.88 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=34.3
Q ss_pred EEec--cccChhHHHHHHHHHH-hhhhcCC-CCCeEEEEeCCCCCHHHHHHHHHHHhhhCCCeEEE
Q 025891 125 IRCG--GPVEDDMANIIVAQLL-YLDAVDP-NKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTV 186 (246)
Q Consensus 125 IfL~--G~Idd~~A~~iiaqLl-~L~~~d~-~k~I~L~INSPGGsV~aGlaIyD~Ir~~k~~V~Tv 186 (246)
|||. +.|+-+.++.+-.++- .||..|+ ..+-+|.+.|||=+- .=...-+..++...+|...
T Consensus 30 V~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R-pL~~~~~f~r~~G~~v~v~ 94 (140)
T PRK14639 30 VYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLER-KLSKIEHFAKSIGELVKIT 94 (140)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCEEEEE
Confidence 4553 3476665555555554 2455554 467799999999541 1111345556666555543
No 199
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.19 E-value=3.7e+02 Score=21.53 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=31.9
Q ss_pred cEEEeccccChh--HHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCHHHHHHH------HHHHhhhCCCeEEEEcccc
Q 025891 123 RIIRCGGPVEDD--MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI------FDTIRHIRPDVSTVCVGLA 191 (246)
Q Consensus 123 RIIfL~G~Idd~--~A~~iiaqLl~L~~~d~~k~I~L~INSPGGsV~aGlaI------yD~Ir~~k~~V~Tvv~G~A 191 (246)
||+++|.-|.+. ....+.+.| .+.++=-+-+|.....+.= -..+...++++.+++.|.-
T Consensus 1 ~iv~~GDS~t~g~~~~~~l~~~l----------~~~v~N~g~~G~t~~~~~~~~~~~~~~~l~~~~pd~Vii~~G~N 67 (189)
T cd01825 1 RIAQLGDSHIAGDFFTDVLRGLL----------GVIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGTN 67 (189)
T ss_pred CeeEecCccccccchhhHHHhhh----------ceEEecCccCchhhhhhhccCHHHHHHHHhhCCCCEEEEECCCc
Confidence 678888888763 233333332 3444433556665443221 1134566778888887744
Done!